Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 292 of 295
Found at i:92614312 original size:17 final size:16
Alignment explanation
Indices: 92614290--92614325 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
92614280 AAGCAAATAT
92614290 AACAAAGTAAAATAAAA
1 AACAAAGTAAAA-AAAA
92614307 AACAAAGTAAAAAAAA
1 AACAAAGTAAAAAAAA
92614323 AAC
1 AAC
92614326 TATATAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.78, C:0.08, G:0.06, T:0.08
Consensus pattern (16 bp):
AACAAAGTAAAAAAAA
Found at i:92614406 original size:3 final size:3
Alignment explanation
Indices: 92614376--92614639 Score: 123
Period size: 3 Copynumber: 89.0 Consensus size: 3
92614366 ATAAGTAAAG
*
92614376 ATA AGTA ATA GTA ATGA A-A ATA AT- ATA ATA ATA ATA ATA ATA ATA
1 ATA A-TA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
92614421 AT- ATA A-A AGGTGA AT- ATA AT- ATA ATA ATA TTA A-A ATA AAA ATA
1 ATA ATA ATA A--T-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
92614464 AAA ATA A-A GTA ATA GATA ATA ATA A-A TATA ATA ATA GA-A AT- ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA
*
92614508 ATA TTA A-A GATA AT- ATA A-A TATA AT- ATA ATA ATA ATA ATA AT-
1 ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
92614550 ATA AAA ATG ATA ATA ATG ATG ATA ATA CTA AT- ATA AAA AGA ATA GATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * *
92614598 A-A ATA GTA ATA AAA ATA GATA CGATA ATA ATA GTA TATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA --ATA ATA ATA ATA -ATA ATA
92614640 TGGTGTTAAA
Statistics
Matches: 200, Mismatches: 29, Indels: 64
0.68 0.10 0.22
Matches are distributed among these distances:
2 31 0.16
3 142 0.71
4 21 0.10
5 4 0.02
6 2 0.01
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:92614470 original size:61 final size:59
Alignment explanation
Indices: 92614392--92614564 Score: 147
Period size: 61 Copynumber: 2.8 Consensus size: 59
92614382 AATAGTAATG
* * *
92614392 AAAAT-AATATAATAATAATAATAATAATAATATAAAAGGTGAAT-ATA-ATATAATAATATT
1 AAAATAAAAATAAAAATAATAATAATAATAATATAAAA--T-AATAATAGAAAT-ATAATATT
*
92614452 AAAATAAAAATAAAAATAAAGTAATAGATAATAATA-AATATAATAATAGAAATATAATATT
1 AAAATAAAAATAAAAAT-AA-TAATA-ATAATAATATAAAATAATAATAGAAATATAATATT
* *
92614513 AAAGATAATATAAATATAATATAATAATAATAATAATATAAAAATGATAATA
1 AAA-AT-A-A-AAATA-AAAATAATAATAATAATAATAT-AAAATAATAATA
92614565 ATGATGATAA
Statistics
Matches: 93, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 8 0.09
61 24 0.26
62 7 0.08
63 18 0.19
64 15 0.16
65 17 0.18
66 4 0.04
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.31
Consensus pattern (59 bp):
AAAATAAAAATAAAAATAATAATAATAATAATATAAAATAATAATAGAAATATAATATT
Found at i:92614505 original size:28 final size:26
Alignment explanation
Indices: 92614376--92614585 Score: 111
Period size: 26 Copynumber: 7.9 Consensus size: 26
92614366 ATAAGTAAAG
*
92614376 ATAAGTAATAGTAATGAAAATAATATAATA
1 ATAA-TAATA-TAAT-AATATAA-ATAATA
*
92614406 ATAATAATAATAATAATATAAA-AGGTGA
1 ATAATAAT-ATAATAATATAAATA-AT-A
*
92614434 AT-ATAATATAATAATATTAA-AATA
1 ATAATAATATAATAATATAAATAATA
*
92614458 AAAATAA-A-AATAA-AGT-AATAGATA
1 ATAATAATATAATAATA-TAAATA-ATA
*
92614482 ATAATAAATATAATAATAGAAAT-ATA
1 ATAAT-AATATAATAATATAAATAATA
* *
92614508 ATATTAA-A-GATAATATAAAT-ATAA
1 ATAATAATATAATAATATAAATAAT-A
*
92614532 TATAATAATAATAATAATATAAA-AATG
1 -ATAATAAT-ATAATAATATAAATAATA
*
92614559 ATAATAATGATGATAATACTAATATAA
1 ATAATAAT-ATAATAATA-TAA-ATAA
92614586 AAAGAATAGA
Statistics
Matches: 144, Mismatches: 15, Indels: 43
0.71 0.07 0.21
Matches are distributed among these distances:
22 3 0.02
23 19 0.13
24 12 0.08
25 15 0.10
26 38 0.26
27 16 0.11
28 26 0.18
29 10 0.07
30 5 0.03
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (26 bp):
ATAATAATATAATAATATAAATAATA
Found at i:92614574 original size:54 final size:54
Alignment explanation
Indices: 92614406--92614614 Score: 137
Period size: 54 Copynumber: 3.8 Consensus size: 54
92614396 TAATATAATA
* * * *
92614406 ATAATAATAATAATAATATAA-AAGGTGAATATAAT-ATAATAATATTAA-AATAAAA
1 ATAATACTAAT-ATAATATAATAA--TAAATATAATAATAAAAATA-TAATAATAAAG
* * * *
92614461 ATAAAAATAA-AGTAATAGATAATAATAAATATAATAATAGAAATATAATATTAAAG
1 ATAATACTAATA-TAAT--ATAATAATAAATATAATAATAAAAATATAATAATAAAG
* *
92614517 ATAATA-TAAATATAATATAATAAT-AATAATAAT-ATAAAAATGATAATAATGATG
1 ATAATACT-AATATAATATAATAATAAAT-ATAATAATAAAAAT-ATAATAATAAAG
* * *
92614571 ATAATACTAATATAAAAAGAATAGATAAA-ATAGTAATAAAAATA
1 ATAATACTAATAT-AATATAATA-ATAAATATAATAATAAAAATA
92614615 GATACGATAA
Statistics
Matches: 125, Mismatches: 14, Indels: 30
0.74 0.08 0.18
Matches are distributed among these distances:
53 11 0.09
54 37 0.30
55 35 0.28
56 37 0.30
57 5 0.04
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (54 bp):
ATAATACTAATATAATATAATAATAAATATAATAATAAAAATATAATAATAAAG
Found at i:92614609 original size:24 final size:28
Alignment explanation
Indices: 92614571--92614637 Score: 79
Period size: 26 Copynumber: 2.5 Consensus size: 28
92614561 AATAATGATG
*
92614571 ATAATACTAATATAAAAAGA-ATA-GATA
1 ATAATAGT-ATATAAAAAGAGATACGATA
*
92614598 A-AATAGTA-ATAAAAATAGATACGATA
1 ATAATAGTATATAAAAAGAGATACGATA
92614624 ATAATAGTATATAA
1 ATAATAGTATATAA
92614638 TATGGTGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
24 8 0.24
25 4 0.12
26 10 0.29
27 8 0.24
28 4 0.12
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.27
Consensus pattern (28 bp):
ATAATAGTATATAAAAAGAGATACGATA
Found at i:92614625 original size:127 final size:128
Alignment explanation
Indices: 92614397--92614626 Score: 297
Period size: 127 Copynumber: 1.8 Consensus size: 128
92614387 TAATGAAAAT
* *
92614397 AATATAATAATAATAATAATAATAATATAAAAGGTGAATATAATATAATAATATTAAAATAAAAA
1 AATATAATAATAATAATAATAATAATATAAAAGATGAATATAATATAATAATACTAAAATAAAAA
* * * *
92614462 TAAAAATAAAGTAATAGATAATAATAAATATAATAATAGAAATATAATATTAAAGATAATATA
66 GAAAAATAAAATAATAGATAAAAATAAATACAATAATAGAAATATAATATTAAAGATAATATA
* *
92614525 AATATAAT-ATAATAATAATAATAATATAAAA-ATG-ATAATAATGATGATAATACTAATATAAA
1 AATATAATAATAATAATAATAATAATATAAAAGATGAAT-ATAAT-ATAATAATACTAAAATAAA
* * * *
92614587 AAGAATAGATAAAATAGTA-ATAAAAATAGATACGATAATA
64 AAGAA-AAATAAAATAATAGATAAAAATAAATACAATAATA
92614627 ATAGTATATA
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
125 2 0.02
126 7 0.08
127 60 0.69
128 18 0.21
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.30
Consensus pattern (128 bp):
AATATAATAATAATAATAATAATAATATAAAAGATGAATATAATATAATAATACTAAAATAAAAA
GAAAAATAAAATAATAGATAAAAATAAATACAATAATAGAAATATAATATTAAAGATAATATA
Found at i:92615508 original size:16 final size:16
Alignment explanation
Indices: 92615487--92615517 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92615477 ATTTGAATAG
*
92615487 AAAAGAAAGAAGAAAT
1 AAAAGAAAAAAGAAAT
92615503 AAAAGAAAAAAGAAA
1 AAAAGAAAAAAGAAA
92615518 CAGATTCGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAT
Found at i:92615917 original size:16 final size:17
Alignment explanation
Indices: 92615892--92615933 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
92615882 TTTGATTTTT
92615892 TTGGGCTA-GGGTTTAG
1 TTGGGCTAGGGGTTTAG
*
92615908 TTGGGTTAGGGGTTTAG
1 TTGGGCTAGGGGTTTAG
92615925 TTGGGCTAG
1 TTGGGCTAG
92615934 TAGTTTTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.12, C:0.05, G:0.45, T:0.38
Consensus pattern (17 bp):
TTGGGCTAGGGGTTTAG
Found at i:92617369 original size:18 final size:19
Alignment explanation
Indices: 92617348--92617383 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
92617338 AATTTTTGAA
*
92617348 AATTTTATAAA-TATTTTG
1 AATTTTAAAAACTATTTTG
92617366 AATTTTAAAAACTATTTT
1 AATTTTAAAAACTATTTT
92617384 TATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
AATTTTAAAAACTATTTTG
Found at i:92617481 original size:9 final size:9
Alignment explanation
Indices: 92617467--92617505 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
92617457 ACACTAATCT
92617467 ATTATTCGA
1 ATTATTCGA
*
92617476 ATTATTTGA
1 ATTATTCGA
92617485 ATTATTCGA
1 ATTATTCGA
* *
92617494 GTTATTTGA
1 ATTATTCGA
92617503 ATT
1 ATT
92617506 GTGAAATTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (9 bp):
ATTATTCGA
Found at i:92617490 original size:18 final size:18
Alignment explanation
Indices: 92617467--92617505 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
92617457 ACACTAATCT
92617467 ATTATTCGAATTATTTGA
1 ATTATTCGAATTATTTGA
*
92617485 ATTATTCGAGTTATTTGA
1 ATTATTCGAATTATTTGA
92617503 ATT
1 ATT
92617506 GTGAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (18 bp):
ATTATTCGAATTATTTGA
Found at i:92619369 original size:15 final size:16
Alignment explanation
Indices: 92619341--92619370 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
92619331 TTAATAATAA
92619341 TAATAAATAAAATTTT
1 TAATAAATAAAATTTT
92619357 TAATAAA-AAAATTT
1 TAATAAATAAAATTT
92619371 AATTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TAATAAATAAAATTTT
Found at i:92620352 original size:45 final size:45
Alignment explanation
Indices: 92620253--92620343 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
92620243 CAACAACAGT
92620253 AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
1 AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
92620298 AATGCTTAAACTAGAATTTTTTAAGTTG-AAAAATAATTGGATTA
1 AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
92620342 AA
1 AA
92620344 CTTTTTAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 18 0.39
45 28 0.61
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.37
Consensus pattern (45 bp):
AATGCTTAAACTAGAATTTTTTAAGTTGAAAAAATAATTGGATTA
Found at i:92620953 original size:16 final size:16
Alignment explanation
Indices: 92620910--92620962 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
92620900 CATAATGTGA
92620910 AATTT-ATTTTTTATT
1 AATTTAATTTTTTATT
*
92620925 -ATTTACATATTTTATT
1 AATTTA-ATTTTTTATT
92620941 AATTTAATTTTTTAGTT
1 AATTTAATTTTTTA-TT
92620958 AATTT
1 AATTT
92620963 GATGTTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 4 0.12
16 16 0.50
17 12 0.38
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
AATTTAATTTTTTATT
Found at i:92621297 original size:16 final size:18
Alignment explanation
Indices: 92621264--92621326 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 18
92621254 TTTCATTAAA
92621264 AATAATAATTTAAATTTTTT
1 AATAA-AATTT-AATTTTTT
92621284 AA-AAAA-TTAA-TTTTT
1 AATAAAATTTAATTTTTT
92621299 AATAAAATTTAATTGTTTTT
1 AATAAAATTTAA-T-TTTTT
92621319 AATAAAAT
1 AATAAAAT
92621327 ACAGTTATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.18
16 6 0.16
17 6 0.16
18 2 0.05
19 2 0.05
20 15 0.39
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
AATAAAATTTAATTTTTT
Found at i:92625937 original size:176 final size:185
Alignment explanation
Indices: 92625638--92626144 Score: 667
Period size: 194 Copynumber: 2.7 Consensus size: 185
92625628 AATCAGTAAT
92625638 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
1 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
** *
92625703 TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGCATGCCGGTTTGTTGGATC
66 TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
* * *
92625768 ATTATAT-TT-G-TT-GG-T-T-T-C-TGTCTATTGACATCCTCGAATCCACATA
131 ATTATATGTTGGTTTCGGTTATATACATGTCGATTGACATCCGCAAATCCACATA
*
92625814 GTTTTATGTCATACTTAAGCCGAAATAGGTTAATATTGTCTATGAATATCTGTGAAATCGGAAAG
1 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
*
92625879 TTTTAGGTCATATTAAGTGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
66 TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
*
92625944 ATTATATGTGTTGGTTTCGGTTTATAATCAATACATTGTCGATTGATATCCGCAAATCCACATA
131 ATTATA--TGTTGGTTTCGG--T-T-AT--ATACA-TGTCGATTGACATCCGCAAATCCACATA
* * * * *
92626008 GTTTTACGGCATACTTAAGCTGAAATAGGTTGATATTGTGTATGAATATCTGCCG-AATC-GAGA
1 GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTG-TGAAATCGGA-A
* * * *
92626071 AGTTTTAGGTCATGTTAAGCGGCAATAGGCTTCTGTCTTAGCATATGGTGTGAAGGTTTGTTGGA
64 AGTTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGA
*
92626136 TCACTATAT
129 TCATTATAT
92626145 ATGATGTCTC
Statistics
Matches: 290, Mismatches: 21, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
176 131 0.45
178 1 0.00
179 2 0.01
180 1 0.00
181 2 0.01
182 2 0.01
186 1 0.00
188 1 0.00
191 1 0.00
192 2 0.01
193 2 0.01
194 143 0.49
195 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (185 bp):
GTTTTATGTCATACTTAAGCCGAAATAGGTTGATATTGTCTATGAATATCTGTGAAATCGGAAAG
TTTTAGGTCATATTAAGCGGCAATAGGCGTCTGTCTTAGCATTTGGTGTGCAGGTTTGTTGGATC
ATTATATGTTGGTTTCGGTTATATACATGTCGATTGACATCCGCAAATCCACATA
Found at i:92628653 original size:27 final size:27
Alignment explanation
Indices: 92628623--92628682 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
92628613 ATAGTTTTTC
92628623 CTAATTTAATACCTAAATTTTTTTTGT
1 CTAATTTAATACCTAAATTTTTTTTGT
**
92628650 CTAATTTGGTACCTAAATTTTTTTTGT
1 CTAATTTAATACCTAAATTTTTTTTGT
92628677 CTAATT
1 CTAATT
92628683 AGGCACCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.55
Consensus pattern (27 bp):
CTAATTTAATACCTAAATTTTTTTTGT
Found at i:92628694 original size:27 final size:27
Alignment explanation
Indices: 92628637--92628696 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
92628627 TTTAATACCT
* * *
92628637 AAATTTTTTTTGTCTAATTTGGTACCT
1 AAATTTTTTTTGTCTAATTAGGCACCC
92628664 AAATTTTTTTTGTCTAATTAGGCACCC
1 AAATTTTTTTTGTCTAATTAGGCACCC
92628691 AAATTT
1 AAATTT
92628697 GACATTTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (27 bp):
AAATTTTTTTTGTCTAATTAGGCACCC
Found at i:92631602 original size:25 final size:25
Alignment explanation
Indices: 92631568--92631621 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
92631558 TACAAAGGGT
92631568 AAGTCCTAATAGAATTCCTAATTTA
1 AAGTCCTAATAGAATTCCTAATTTA
*
92631593 AAGTGCTAATAGAATTCCTAATTTA
1 AAGTCCTAATAGAATTCCTAATTTA
92631618 AAGT
1 AAGT
92631622 TTATAAGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (25 bp):
AAGTCCTAATAGAATTCCTAATTTA
Found at i:92634300 original size:52 final size:52
Alignment explanation
Indices: 92634175--92634337 Score: 218
Period size: 52 Copynumber: 3.1 Consensus size: 52
92634165 ACACGGATCA
* * * * * *
92634175 CACATCATATCGATGCCATATCTCAGATATGGTCTTATACAGAAGCACATTAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACA-TAT
*
92634228 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAACACATAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATAT
** * *
92634280 CACATTGCACCGATGCCATAGCCTAGCTATGGTCTTATACGGAAGCATATAT
1 CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATAT
92634332 CACATC
1 CACATC
92634338 TTTTCCGTCA
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
52 55 0.57
53 42 0.43
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (52 bp):
CACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATAT
Found at i:92645337 original size:20 final size:20
Alignment explanation
Indices: 92645312--92645351 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
92645302 TTAAAGACTT
*
92645312 GAAATTGATATTCAAACATC
1 GAAATTGACATTCAAACATC
92645332 GAAATTGACATTCAAACATC
1 GAAATTGACATTCAAACATC
92645352 ATCTCTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (20 bp):
GAAATTGACATTCAAACATC
Found at i:92662258 original size:51 final size:51
Alignment explanation
Indices: 92662187--92662287 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
92662177 ATTTATCCTT
*
92662187 TGCACATTTGTATTTTAGATGGGATTCATCGCAGGCTTTGTCAATTTTCTC
1 TGCACATTTGTATTTCAGATGGGATTCATCGCAGGCTTTGTCAATTTTCTC
*
92662238 TGCACATTTGTATTTCAGATGGGATTCATCGTAGGCTTTGTCAATTTTCT
1 TGCACATTTGTATTTCAGATGGGATTCATCGCAGGCTTTGTCAATTTTCT
92662288 TATCACCATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.44
Consensus pattern (51 bp):
TGCACATTTGTATTTCAGATGGGATTCATCGCAGGCTTTGTCAATTTTCTC
Found at i:92665629 original size:34 final size:34
Alignment explanation
Indices: 92665591--92665686 Score: 84
Period size: 45 Copynumber: 2.5 Consensus size: 34
92665581 GTACAAATGT
92665591 ATTTTGTTCAATTAATCTATAATTATACTTTCTC
1 ATTTTGTTCAATTAATCTATAATTATACTTTCTC
*
92665625 ATTTTGTACCATCAACTTTTCTTTAATCTATAATTATATTTTCTC
1 ATTTTGT----TCAA-------TTAATCTATAATTATACTTTCTC
92665670 ATTTTGTTCAATTAATC
1 ATTTTGTTCAATTAATC
92665687 CTTATGCCTA
Statistics
Matches: 50, Mismatches: 1, Indels: 22
0.68 0.01 0.30
Matches are distributed among these distances:
34 13 0.26
38 4 0.08
41 4 0.08
45 29 0.58
ACGTcount: A:0.28, C:0.16, G:0.03, T:0.53
Consensus pattern (34 bp):
ATTTTGTTCAATTAATCTATAATTATACTTTCTC
Found at i:92671354 original size:29 final size:29
Alignment explanation
Indices: 92671312--92671369 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
92671302 GCGTGTATGT
92671312 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
1 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
92671341 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
1 GTGTGTGAGAGAGGGAGAGAGAGAACTGG
92671370 CCTTTTTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.52, T:0.14
Consensus pattern (29 bp):
GTGTGTGAGAGAGGGAGAGAGAGAACTGG
Found at i:92673857 original size:10 final size:10
Alignment explanation
Indices: 92673842--92673866 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92673832 TAATGGAGAA
92673842 TATTTTAATT
1 TATTTTAATT
92673852 TATTTTAATT
1 TATTTTAATT
92673862 TATTT
1 TATTT
92673867 ATTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTTTAATT
Found at i:92673868 original size:14 final size:15
Alignment explanation
Indices: 92673849--92673884 Score: 56
Period size: 14 Copynumber: 2.4 Consensus size: 15
92673839 GAATATTTTA
92673849 ATTTATTTTAAT-TT
1 ATTTATTTTAATGTT
92673863 ATTTATTTTAATGTT
1 ATTTATTTTAATGTT
92673878 ATATTAT
1 AT-TTAT
92673885 CCTATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 12 0.60
15 4 0.20
16 4 0.20
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
ATTTATTTTAATGTT
Found at i:92675548 original size:6 final size:6
Alignment explanation
Indices: 92675539--92675568 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
92675529 ATTGGAATAA
*
92675539 GTTAAT GTTAAT TTTAAT GTTAAT GTTAAT
1 GTTAAT GTTAAT GTTAAT GTTAAT GTTAAT
92675569 TGAGGATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (6 bp):
GTTAAT
Found at i:92677041 original size:21 final size:21
Alignment explanation
Indices: 92677008--92677047 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
92676998 ATAGAGTTAA
*
92677008 CATTTATTATTTAAAAAATAT
1 CATTTACTATTTAAAAAATAT
* *
92677029 CATTTACTGTTTAACAAAT
1 CATTTACTATTTAAAAAAT
92677048 TTACTATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (21 bp):
CATTTACTATTTAAAAAATAT
Found at i:92685076 original size:32 final size:32
Alignment explanation
Indices: 92685040--92685104 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
92685030 CAACGGAATG
92685040 AGATTTATGAAGGGTAAAATGGGGATTTCATT
1 AGATTTATGAAGGGTAAAATGGGGATTTCATT
92685072 AGATTTATGAAGGGTAAAATGGGGATTTCATT
1 AGATTTATGAAGGGTAAAATGGGGATTTCATT
92685104 A
1 A
92685105 CTCTAGATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (32 bp):
AGATTTATGAAGGGTAAAATGGGGATTTCATT
Found at i:92687030 original size:15 final size:15
Alignment explanation
Indices: 92687018--92687047 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92687008 TTTTAAAATT
92687018 TTAAAATTAAAAAAA
1 TTAAAATTAAAAAAA
*
92687033 TTAAATTTAAAAAAA
1 TTAAAATTAAAAAAA
92687048 AACATAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TTAAAATTAAAAAAA
Found at i:92690260 original size:31 final size:31
Alignment explanation
Indices: 92690225--92690297 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
92690215 TAATACATGG
* *
92690225 TAAAATTATAATTTATTCCCTCTTAAAA-TAA
1 TAAAATTATAATTTACTCCCTCTAAAAACT-A
* * *
92690256 TAAAATTTTGATTTACTCCTTCTAAAAACTA
1 TAAAATTATAATTTACTCCCTCTAAAAACTA
*
92690287 TAAAAATATAA
1 TAAAATTATAA
92690298 GTCAATAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
31 32 0.97
32 1 0.03
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (31 bp):
TAAAATTATAATTTACTCCCTCTAAAAACTA
Found at i:92691505 original size:11 final size:11
Alignment explanation
Indices: 92691489--92691513 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92691479 CACCTGACTA
92691489 TAAATAATTAT
1 TAAATAATTAT
92691500 TAAATAATTAT
1 TAAATAATTAT
92691511 TAA
1 TAA
92691514 CGAATTGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TAAATAATTAT
Found at i:92692025 original size:18 final size:18
Alignment explanation
Indices: 92692002--92692044 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
92691992 AATAAATTTT
92692002 GAATTTTCATATTTTTAA
1 GAATTTTCATATTTTTAA
*
92692020 GAATTTGTGATATTTTTAA
1 GAATTT-TCATATTTTTAA
92692039 -AATTTT
1 GAATTTT
92692045 TTAGATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 11 0.48
19 11 0.48
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (18 bp):
GAATTTTCATATTTTTAA
Found at i:92693387 original size:9 final size:9
Alignment explanation
Indices: 92693328--92693411 Score: 57
Period size: 9 Copynumber: 9.2 Consensus size: 9
92693318 GTCATAATAA
*
92693328 AAAAGTATT
1 AAAATTATT
92693337 AAAATT-TT
1 AAAATTATT
**
92693345 AAAAGCATT
1 AAAATTATT
*
92693354 AAATATTACAAT
1 AAA-ATT--ATT
92693366 AAAATTA-T
1 AAAATTATT
*
92693374 AAAATTCTT
1 AAAATTATT
92693383 AAAATTATT
1 AAAATTATT
*
92693392 AAAAAT-TT
1 AAAATTATT
92693400 AAAAGTTATT
1 AAAA-TTATT
92693410 AA
1 AA
92693412 GAAATTATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
8 19 0.33
9 26 0.45
10 5 0.09
11 3 0.05
12 5 0.09
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:92693387 original size:17 final size:16
Alignment explanation
Indices: 92693365--92693423 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 16
92693355 AATATTACAA
*
92693365 TAAAATTATAAAATTCT
1 TAAAATTATAAAAAT-T
92693382 TAAAATTATTAAAAATT
1 TAAAATTA-TAAAAATT
92693399 TAAAAGTTATTAAGAAATT
1 TAAAA-TTA-TAA-AAATT
92693418 ATAAAA
1 -TAAAA
92693424 AAATAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 14 0.38
18 13 0.35
19 5 0.14
20 5 0.14
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (16 bp):
TAAAATTATAAAAATT
Found at i:92693408 original size:18 final size:18
Alignment explanation
Indices: 92693381--92693423 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
92693371 TATAAAATTC
92693381 TTAAAATTATTAA-AAAT
1 TTAAAATTATTAAGAAAT
92693398 TTAAAAGTTATTAAGAAAT
1 TTAAAA-TTATTAAGAAAT
92693417 TATAAAA
1 T-TAAAA
92693424 AAATAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.26
18 7 0.30
19 5 0.22
20 5 0.22
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
TTAAAATTATTAAGAAAT
Found at i:92693674 original size:15 final size:15
Alignment explanation
Indices: 92693650--92693679 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92693640 ATATTTTACC
*
92693650 ATTTTTAATATTTTT
1 ATTTTAAATATTTTT
92693665 ATTTTAAATATTTTT
1 ATTTTAAATATTTTT
92693680 TTACAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTAAATATTTTT
Found at i:92709333 original size:42 final size:43
Alignment explanation
Indices: 92709259--92709344 Score: 149
Period size: 42 Copynumber: 2.0 Consensus size: 43
92709249 AATTATTGTA
92709259 ATTAAATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
1 ATTAAATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
92709302 ATTAATATTGAATTT-A-AAAAAAATAGTAGTGTTAACAATTGG
1 ATTAA-ATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
92709344 A
1 A
92709345 GCTGAATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
42 27 0.64
43 6 0.14
44 9 0.21
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.34
Consensus pattern (43 bp):
ATTAAATTGAATTTAACAAAAAAATAGTAGTGTTAACAATTGG
Found at i:92709353 original size:37 final size:39
Alignment explanation
Indices: 92709266--92709357 Score: 107
Period size: 42 Copynumber: 2.3 Consensus size: 39
92709256 GTAATTAAAT
*
92709266 TGAATTTAACAAAAAAATAGTAGTGTTAACAATTGGATTAATAT
1 TGAATTT-A-AAAAAAATAGTAGTGTTAACAATTGG---AATAC
*
92709310 TGAATTTAAAAAAAATAGTAGTGTTAACAATTGG-A-GC
1 TGAATTTAAAAAAAATAGTAGTGTTAACAATTGGAATAC
92709347 TGAATTTAAAA
1 TGAATTTAAAA
92709358 TTCTAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
37 11 0.24
38 1 0.02
42 26 0.57
43 1 0.02
44 7 0.15
ACGTcount: A:0.48, C:0.04, G:0.15, T:0.33
Consensus pattern (39 bp):
TGAATTTAAAAAAAATAGTAGTGTTAACAATTGGAATAC
Found at i:92709366 original size:43 final size:42
Alignment explanation
Indices: 92709276--92709370 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
92709266 TGAATTTAAC
* * *
92709276 AAAAAAATAGTAGTGTTAACAATTGGATTAATATTGAATTTA
1 AAAAAAATAGTAGTGTTAACAATTGGATGAATATTAAAATTA
*
92709318 AAAAAAATAGTAGTGTTAACAATTGGAGCTGAAT-TTAAAATTC
1 AAAAAAATAGTAGTGTTAACAATTGGA--TGAATATTAAAATTA
*
92709361 TAAAAAATAG
1 AAAAAAATAG
92709371 AGGGCTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 27 0.59
43 15 0.33
44 4 0.09
ACGTcount: A:0.49, C:0.04, G:0.15, T:0.32
Consensus pattern (42 bp):
AAAAAAATAGTAGTGTTAACAATTGGATGAATATTAAAATTA
Found at i:92725106 original size:48 final size:48
Alignment explanation
Indices: 92725045--92725164 Score: 240
Period size: 48 Copynumber: 2.5 Consensus size: 48
92725035 ATTACAAACA
92725045 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
92725093 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
92725141 TCAATTATTTACCCTATTAACAAA
1 TCAATTATTTACCCTATTAACAAA
92725165 GCTCGGACTA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (48 bp):
TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
Found at i:92726776 original size:5 final size:5
Alignment explanation
Indices: 92726752--92726818 Score: 107
Period size: 5 Copynumber: 12.8 Consensus size: 5
92726742 ATTTGTTTCT
92726752 TATATA TATATA TAATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATA-A T-ATAA TATAA TATAA TATAA TATAA TATAA TATAA
92726800 TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATA
92726819 CTTAATTATT
Statistics
Matches: 60, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
5 48 0.80
6 9 0.15
7 3 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:92728171 original size:96 final size:96
Alignment explanation
Indices: 92728018--92728196 Score: 286
Period size: 96 Copynumber: 1.9 Consensus size: 96
92728008 TGTCATTGAT
* * *
92728018 GGGAACGATGGAACAGATACGGAGCCCAATAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
1 GGGAACGATGGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
92728083 GAGGGCAAACAGGAGCAAGCCTGTCATCAAA
66 GAGGGCAAACAGGAGCAAGCCTGTCATCAAA
* * *
92728114 GGGAACGATGGAGCAGACAAGGAGCCTAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAA
1 GGGAACGATGGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
* *
92728179 GAGGGCTAAGAGGAGCAA
66 GAGGGCAAACAGGAGCAA
92728197 AAAGAAGCGA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.37, C:0.19, G:0.34, T:0.10
Consensus pattern (96 bp):
GGGAACGATGGAACAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAA
GAGGGCAAACAGGAGCAAGCCTGTCATCAAA
Found at i:92732111 original size:24 final size:24
Alignment explanation
Indices: 92732028--92732135 Score: 117
Period size: 24 Copynumber: 4.5 Consensus size: 24
92732018 CGGATTTAAG
* *
92732028 TGGCACTATGTCAGCGTATTTGTA
1 TGGCACTATGTGAGCATATTTGTA
*
92732052 TGGCACTATGTGAGCGTATTTGTA
1 TGGCACTATGTGAGCATATTTGTA
* *
92732076 TGGCACTATGTGTGCATATATGTA
1 TGGCACTATGTGAGCATATTTGTA
* * * * * *
92732100 AGGCACTATGTGTGCAGAATTATT
1 TGGCACTATGTGAGCATATTTGTA
92732124 TGGCACTATGTG
1 TGGCACTATGTG
92732136 TGCGGAGTTG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGAGCATATTTGTA
Found at i:92734683 original size:51 final size:51
Alignment explanation
Indices: 92734606--92734763 Score: 253
Period size: 51 Copynumber: 3.1 Consensus size: 51
92734596 ACTTCTTATC
* * * *
92734606 AGTGACAAGTGATAAGTGGTAACCTCAGCTACACTCATTTGATTAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
*
92734657 AGTGACAAGTGATAAATGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
* *
92734708 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
92734759 AGTGA
1 AGTGA
92734764 TAAATGTGAT
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 99 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
Found at i:92741696 original size:31 final size:29
Alignment explanation
Indices: 92741661--92741718 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
92741651 TAATAGTATT
*
92741661 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
92741692 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
92741719 GTAGATAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:92741789 original size:18 final size:17
Alignment explanation
Indices: 92741762--92741795 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
92741752 TGTAGATAAG
92741762 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTTA
*
92741779 ATTTAAATATTATATTT
1 ATTT-AATATTAAATTT
92741796 TACACATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:92767231 original size:13 final size:12
Alignment explanation
Indices: 92767205--92767239 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
92767195 AAGACTGTGA
92767205 AAAAT-AAAAAT
1 AAAATAAAAAAT
92767216 AAAATAAAATAAT
1 AAAATAAAA-AAT
92767229 AAAATAAAAAA
1 AAAATAAAAAA
92767240 CACACAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.23
12 5 0.23
13 12 0.55
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:92774364 original size:9 final size:10
Alignment explanation
Indices: 92774337--92774361 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92774327 ATTTAATTAA
92774337 AATTTTAATT
1 AATTTTAATT
92774347 AATTTTAATT
1 AATTTTAATT
92774357 AATTT
1 AATTT
92774362 AATAAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:92777874 original size:12 final size:12
Alignment explanation
Indices: 92777857--92777894 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
92777847 TGGGTTAATA
*
92777857 TTTGATTTTTTC
1 TTTGATTTATTC
92777869 TTTGATTTATTC
1 TTTGATTTATTC
92777881 TTTG-TTGTATTC
1 TTTGATT-TATTC
92777893 TT
1 TT
92777895 AGTTAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.11, C:0.08, G:0.11, T:0.71
Consensus pattern (12 bp):
TTTGATTTATTC
Found at i:92784761 original size:12 final size:12
Alignment explanation
Indices: 92784744--92784770 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
92784734 TAAAAATTAT
92784744 AAAAATTTAAAA
1 AAAAATTTAAAA
92784756 AAAAATTTAAAA
1 AAAAATTTAAAA
92784768 AAA
1 AAA
92784771 TTAGAGTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAAATTTAAAA
Found at i:92787519 original size:46 final size:38
Alignment explanation
Indices: 92787498--92787684 Score: 236
Period size: 37 Copynumber: 4.8 Consensus size: 38
92787488 AGCTAAAGCT
*
92787498 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
*
92787536 -CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA-
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
** *
92787572 ACCACTTATCACTTTGTTTCTTGATCAGATAAATGTA-
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
92787609 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
92787647 CTAAAACTACCACTTATCACTTTGTCACTTGATCAGAT
1 --------ACCACTTATCACTTTGTCACTTGATCAGAT
92787685 GTACTCAAAT
Statistics
Matches: 132, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
37 102 0.77
46 30 0.23
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (38 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:92787540 original size:37 final size:37
Alignment explanation
Indices: 92787498--92787645 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
92787488 AGCTAAAGCT
*
92787498 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
* *
92787535 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
** *
92787572 ACCACTTATCACTTTGTTTCTTGATCAGATAAATGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
92787609 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
92787646 GCTAAAACTA
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (37 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
Found at i:92789422 original size:16 final size:17
Alignment explanation
Indices: 92789399--92789437 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
92789389 ATATATAATA
*
92789399 ATAAAATTGAAAATTAT
1 ATAAAATTAAAAATTAT
92789416 A-AAAATTAAAAATTAT
1 ATAAAATTAAAAATTAT
92789432 ATAAAA
1 ATAAAA
92789438 GTAGATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (17 bp):
ATAAAATTAAAAATTAT
Found at i:92793431 original size:14 final size:14
Alignment explanation
Indices: 92793373--92793431 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
92793363 CTTATCTATT
*
92793373 TTATTATTATGATA
1 TTATTATTATAATA
*
92793387 TGATTATTAATAATA
1 TTATTATT-ATAATA
* *
92793402 TTATTATTACATTA
1 TTATTATTATAATA
* *
92793416 TTGTTATTATAGTA
1 TTATTATTATAATA
92793430 TT
1 TT
92793432 CTTTTATTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
14 24 0.67
15 12 0.33
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (14 bp):
TTATTATTATAATA
Found at i:92798753 original size:13 final size:13
Alignment explanation
Indices: 92798737--92798776 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
92798727 TTCATAAAAA
92798737 TTTTATAATTTATT
1 TTTTATAATTT-TT
*
92798751 TTTTATAAATTTT
1 TTTTATAATTTTT
*
92798764 GTTTATAATTTTT
1 TTTTATAATTTTT
92798777 ATGTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (13 bp):
TTTTATAATTTTT
Found at i:92798783 original size:20 final size:20
Alignment explanation
Indices: 92798760--92798797 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92798750 TTTTTATAAA
92798760 TTTTGTTTA-TAATTTTTATG
1 TTTT-TTTACTAATTTTTATG
92798780 TTTTTTTACTAATTTTTA
1 TTTTTTTACTAATTTTTA
92798798 AAATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (20 bp):
TTTTTTTACTAATTTTTATG
Found at i:92801579 original size:31 final size:31
Alignment explanation
Indices: 92801516--92801585 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
92801506 AACTTGTGGA
*
92801516 TTTAGTCTCTATACTTTTTAAATTGATCAAT
1 TTTAGTCTCTATACTTTTTAAATTGATAAAT
*
92801547 TTTAGTCTCTATACTTTTTAAATT-TTAAAAT
1 TTTAGTCTCTATACTTTTTAAATTGAT-AAAT
92801578 TTTAGTCT
1 TTTAGTCT
92801586 TGACCCAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.29, C:0.11, G:0.06, T:0.54
Consensus pattern (31 bp):
TTTAGTCTCTATACTTTTTAAATTGATAAAT
Found at i:92808222 original size:60 final size:60
Alignment explanation
Indices: 92808149--92808262 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 60
92808139 ATCTTACATG
*
92808149 ATAAAATACTCATTTAGTAAGGCCTACACCAAG-TTTGATCAAGTGGCATCTTATTATACA
1 ATAAAATACTCATTTAGTAAGGCCTACACCAAGCTTT-ATCAAGTGACATCTTATTATACA
* *
92808209 ATAAAATACTCATTTAGTAAGGTCTACACCACGCTTTATCAAGTGACATCTTAT
1 ATAAAATACTCATTTAGTAAGGCCTACACCAAGCTTTATCAAGTGACATCTTAT
92808263 CACATCTCAA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
60 47 0.94
61 3 0.06
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.32
Consensus pattern (60 bp):
ATAAAATACTCATTTAGTAAGGCCTACACCAAGCTTTATCAAGTGACATCTTATTATACA
Found at i:92814317 original size:17 final size:17
Alignment explanation
Indices: 92814279--92814317 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
92814269 TTTCATTTTT
92814279 TTTTTGAATTTTTCTAA
1 TTTTTGAATTTTTCTAA
*
92814296 CTTTTGAATTTTTCTAA
1 TTTTTGAATTTTTCTAA
92814313 TTTTT
1 TTTTT
92814318 TTTTTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTTGAATTTTTCTAA
Found at i:92816022 original size:27 final size:27
Alignment explanation
Indices: 92815992--92816046 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
92815982 ACATAAAGAA
92815992 AGAACAACCATGTTTAAAACTAGGTCT
1 AGAACAACCATGTTTAAAACTAGGTCT
92816019 AGAACAACCATGTTTAAAACTAGGTCT
1 AGAACAACCATGTTTAAAACTAGGTCT
92816046 A
1 A
92816047 AATATCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (27 bp):
AGAACAACCATGTTTAAAACTAGGTCT
Found at i:92821167 original size:16 final size:15
Alignment explanation
Indices: 92821117--92821168 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
92821107 AAAATTTTCA
92821117 ATAAATA-AA-AAAT
1 ATAAATATAATAAAT
* *
92821130 ATAAATTTATTAAAT
1 ATAAATATAATAAAT
*
92821145 ATTAATATAATATAAT
1 ATAAATATAATA-AAT
92821161 ATAAATAT
1 ATAAATAT
92821169 TTAAAAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 6 0.20
14 1 0.03
15 13 0.43
16 10 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAATATAATAAAT
Found at i:92823112 original size:26 final size:25
Alignment explanation
Indices: 92823082--92823150 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 25
92823072 GAATTTTGTC
92823082 AAATTTAAATACTAAATTGAACAAAA
1 AAATTTAAATACTAAATT-AACAAAA
*
92823108 AAATTTAAATACTAAATTAAGAAAA
1 AAATTTAAATACTAAATTAACAAAA
**
92823133 AAATATCGAATACTAAAT
1 AAAT-TTAAATACTAAAT
92823151 ATTATATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
25 10 0.26
26 29 0.74
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (25 bp):
AAATTTAAATACTAAATTAACAAAA
Found at i:92823460 original size:16 final size:16
Alignment explanation
Indices: 92823441--92823473 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92823431 TTAATTAAAT
92823441 AAAT-TATTAAAAATTA
1 AAATATATT-AAAATTA
92823457 AAATATATTAAAATTA
1 AAATATATTAAAATTA
92823473 A
1 A
92823474 TTTTTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATATATTAAAATTA
Found at i:92825421 original size:2 final size:2
Alignment explanation
Indices: 92825414--92825440 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
92825404 AATGGTCCTC
92825414 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
92825441 CATGTGTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92829302 original size:10 final size:10
Alignment explanation
Indices: 92829278--92829327 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
92829268 TTCATGCTAT
92829278 TTTTTA-AAA
1 TTTTTATAAA
92829287 TTTTTATAAA
1 TTTTTATAAA
*
92829297 TTTTTAT-AC
1 TTTTTATAAA
92829306 TTTTT-T-AA
1 TTTTTATAAA
*
92829314 TATTTATAAA
1 TTTTTATAAA
92829324 TTTT
1 TTTT
92829328 AATTTACTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 6 0.18
9 13 0.38
10 15 0.44
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:92835935 original size:146 final size:146
Alignment explanation
Indices: 92835671--92835969 Score: 508
Period size: 146 Copynumber: 2.0 Consensus size: 146
92835661 TACAAGTAGC
* *
92835671 ATTTCCCTAATTGAAATGCACTTCCTAACTCCGAACCATCTCAACTAAATAAAATGCCTATAAAA
1 ATTTCCCTAATTGAAATGCACTTCCCAACTCCGAACCATCTCAACTAAATAAAATGCATATAAAA
* * *
92835736 TCTACCAATCATCGAATCAAGCATAAAAATTACCCACATTGCATCTACTAAAACCGAACGAATTT
66 TCTAACAATCATCAAATCAAGCATAAAAATTACCCACATTGCATCTACTAAAACCGAACAAATTT
*
92835801 AAGCTTAAAAATTCAA
131 AAGCTTAAAAACTCAA
92835817 ATTTCCCTAATTGAAATGCACTTCCCAACTCCGAACCATCTCAACTAAATAAAATGCATATAAAA
1 ATTTCCCTAATTGAAATGCACTTCCCAACTCCGAACCATCTCAACTAAATAAAATGCATATAAAA
* * **
92835882 TCTAACGATCATCAAATCAAGCATAAAAGTTACTTACATTGCATCTACTAAAACCGAACAAATTT
66 TCTAACAATCATCAAATCAAGCATAAAAATTACCCACATTGCATCTACTAAAACCGAACAAATTT
92835947 AAGCTTAAAAACTCAA
131 AAGCTTAAAAACTCAA
92835963 ATTTCCC
1 ATTTCCC
92835970 AGATCAAATT
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
146 143 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.26
Consensus pattern (146 bp):
ATTTCCCTAATTGAAATGCACTTCCCAACTCCGAACCATCTCAACTAAATAAAATGCATATAAAA
TCTAACAATCATCAAATCAAGCATAAAAATTACCCACATTGCATCTACTAAAACCGAACAAATTT
AAGCTTAAAAACTCAA
Found at i:92842900 original size:172 final size:174
Alignment explanation
Indices: 92842455--92842949 Score: 712
Period size: 172 Copynumber: 2.9 Consensus size: 174
92842445 AGTATAGCAA
* * * ** *
92842455 ATATAGATATGTGTGTGTGTTGAAAATATCTGACATACACAAAACCAACCCAGTCTAGAGTACAT
1 ATATA-ATCTGTGTGTGTGTTGAAAATATCTAACACACACAAAACCAGGCCAATCTAGAGTACAT
* *
92842520 CGAACTATAAAAAAAGCCCCAATTAGTATAACTACTAATCTCATTTAAGTTCACCTTCTTTTCTC
65 CCAACTATAAAAAAAGCCCCAATTAGTATAACTACTAATCTCATTTAAGTTCATCTTCTTTTCTC
* *
92842585 CGCTTTAGGGGCAAAGCATGCAGCAGATTATATATATATGTATATGT
130 CACTTTAGGGGCAAAGCATGCAGCA-ATAATATATATATG-ATATGT
*
92842632 ATATAATC--TGTGTGTGTTGAAAATATCTAACACACGCAAAACCAGGCCAATCTAGA-TAACAT
1 ATATAATCTGTGTGTGTGTTGAAAATATCTAACACACACAAAACCAGGCCAATCTAGAGT-ACAT
* * *
92842694 CCAACTATAACAAAAGCCTCAATTAATATAACTACTAATCTCATTTAAGTTCATCTTCTTTTCTC
65 CCAACTATAAAAAAAGCCCCAATTAGTATAACTACTAATCTCATTTAAGTTCATCTTCTTTTCTC
*
92842759 TACTTTAGGGGCAAAGCATGCAGC-ATAATATATATATG-TATGT
130 CACTTTAGGGGCAAAGCATGCAGCAATAATATATATATGATATGT
* * *
92842802 ATATTATCTGTGTGTGTGTTGAAAATATGTAACACACACAAAATCAGGCCAATCTAGAGTACATC
1 ATATAATCTGTGTGTGTGTTGAAAATATCTAACACACACAAAACCAGGCCAATCTAGAGTACATC
* * * *
92842867 CCACCATAAAAAAAGCCCCAATTAGTGTAACTACTAATCTCATTTGAGTTCATCTTCTTTTCTCC
66 CAACTATAAAAAAAGCCCCAATTAGTATAACTACTAATCTCATTTAAGTTCATCTTCTTTTCTCC
*
92842932 ACTTTAGGGGCCAAGCAT
131 ACTTTAGGGGCAAAGCAT
92842950 ACCTAATAGT
Statistics
Matches: 286, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
170 12 0.04
172 137 0.48
173 2 0.01
174 128 0.45
176 2 0.01
177 5 0.02
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (174 bp):
ATATAATCTGTGTGTGTGTTGAAAATATCTAACACACACAAAACCAGGCCAATCTAGAGTACATC
CAACTATAAAAAAAGCCCCAATTAGTATAACTACTAATCTCATTTAAGTTCATCTTCTTTTCTCC
ACTTTAGGGGCAAAGCATGCAGCAATAATATATATATGATATGT
Found at i:92843382 original size:6 final size:6
Alignment explanation
Indices: 92843373--92843399 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
92843363 AGGAAAAAAA
92843373 AATTAG AATTAG AATTAG AATTAG AAT
1 AATTAG AATTAG AATTAG AATTAG AAT
92843400 GAATCCTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (6 bp):
AATTAG
Found at i:92843591 original size:15 final size:15
Alignment explanation
Indices: 92843571--92843599 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92843561 AAGGTAAATA
92843571 ATTGTCTAATTAATT
1 ATTGTCTAATTAATT
92843586 ATTGTCTAATTAAT
1 ATTGTCTAATTAAT
92843600 CATTTAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (15 bp):
ATTGTCTAATTAATT
Found at i:92845089 original size:15 final size:16
Alignment explanation
Indices: 92845051--92845090 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
92845041 CCATCAATTC
*
92845051 TTAATTTATAGTTAAT
1 TTAATTAATAGTTAAT
92845067 TTAA-TAATAGTTAA-
1 TTAATTAATAGTTAAT
92845081 TTAATTAATA
1 TTAATTAATA
92845091 AATTAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 4 0.18
15 14 0.64
16 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
TTAATTAATAGTTAAT
Found at i:92845101 original size:19 final size:19
Alignment explanation
Indices: 92845079--92845131 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
92845069 AATAATAGTT
* *
92845079 AATTAATTAATAAATTAAA
1 AATTAATAAAAAAATTAAA
*
92845098 AATTCATAAAAAAATTAAAA
1 AATTAATAAAAAAATT-AAA
*
92845118 AATTCATAAAAAAA
1 AATTAATAAAAAAA
92845132 AACCAATTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (19 bp):
AATTAATAAAAAAATTAAA
Found at i:92845120 original size:20 final size:19
Alignment explanation
Indices: 92845090--92845131 Score: 75
Period size: 20 Copynumber: 2.2 Consensus size: 19
92845080 ATTAATTAAT
92845090 AAATTAAAAATTCATAAAA
1 AAATTAAAAATTCATAAAA
92845109 AAATTAAAAAATTCATAAAA
1 AAATT-AAAAATTCATAAAA
92845129 AAA
1 AAA
92845132 AACCAATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (19 bp):
AAATTAAAAATTCATAAAA
Found at i:92846346 original size:25 final size:23
Alignment explanation
Indices: 92846305--92846350 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
92846295 TAGATTATTT
*
92846305 ATATATTTATATAAATTTATAAA
1 ATATATTTATAAAAATTTATAAA
92846328 ATATATTATATAAATAATTTATA
1 ATATATT-TATAAA-AATTTATA
92846351 TTATTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATATTTATAAAAATTTATAAA
Found at i:92854996 original size:31 final size:31
Alignment explanation
Indices: 92854961--92855024 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
92854951 AGAAACCTAC
*
92854961 TAATTCATTGACTTAAATAAAAACTTTTGAA
1 TAATTCAGTGACTTAAATAAAAACTTTTGAA
**
92854992 TAATTCAGTGACTTAAATAAAATTTTTTGAA
1 TAATTCAGTGACTTAAATAAAAACTTTTGAA
92855023 TA
1 TA
92855025 GCTTAATGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (31 bp):
TAATTCAGTGACTTAAATAAAAACTTTTGAA
Found at i:92858519 original size:55 final size:54
Alignment explanation
Indices: 92858430--92858560 Score: 199
Period size: 55 Copynumber: 2.4 Consensus size: 54
92858420 TTTTTTTTCA
* * * *
92858430 AAGCAAGGTTTTGGGTTCAAGTATTTGTGCGATGGTGAGGAGTTTGGTACCTTT
1 AAGCAAGGTTTCGGGTTCAAGTAATTGTGAGATGGTGAGGAGTTTGATACCTTT
* *
92858484 AAGGCAAGGTTCCGGGTTTAAGTAATTGTGAGATGGTGAGGAGTTTGATACCTTT
1 AA-GCAAGGTTTCGGGTTCAAGTAATTGTGAGATGGTGAGGAGTTTGATACCTTT
92858539 AAGCAAGGTTTCGGGTTCAAGT
1 AAGCAAGGTTTCGGGTTCAAGT
92858561 GTTCTATTGA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 20 0.29
55 48 0.71
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.34
Consensus pattern (54 bp):
AAGCAAGGTTTCGGGTTCAAGTAATTGTGAGATGGTGAGGAGTTTGATACCTTT
Found at i:92860872 original size:8 final size:8
Alignment explanation
Indices: 92860859--92860887 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
92860849 GTACAAATTG
92860859 TAATTGCA
1 TAATTGCA
92860867 TAATTGCA
1 TAATTGCA
92860875 TAATTGCA
1 TAATTGCA
92860883 TAATT
1 TAATT
92860888 ACATCATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (8 bp):
TAATTGCA
Found at i:92861631 original size:21 final size:21
Alignment explanation
Indices: 92861607--92861647 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
92861597 GAATAATATA
*
92861607 TATA-TTTTTTTGTTATAAATT
1 TATAGTTTTTTT-TTACAAATT
92861628 TATAGTTTTTTTTTACAAAT
1 TATAGTTTTTTTTTACAAAT
92861648 AAGAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (21 bp):
TATAGTTTTTTTTTACAAATT
Found at i:92862015 original size:14 final size:13
Alignment explanation
Indices: 92861986--92862020 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
92861976 AAAGTGAAAA
*
92861986 TTTTTCTTAGTGT
1 TTTTTCTTAATGT
92861999 TTTTTCTTAATGT
1 TTTTTCTTAATGT
92862012 TTTTT-TTAA
1 TTTTTCTTAA
92862021 AAAAAACGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.14, C:0.06, G:0.09, T:0.71
Consensus pattern (13 bp):
TTTTTCTTAATGT
Found at i:92865579 original size:16 final size:14
Alignment explanation
Indices: 92865538--92865591 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
92865528 ATTAATGATT
92865538 AAAATT-AATTAAA
1 AAAATTAAATTAAA
*
92865551 AAAGTTAAATTAAA
1 AAAATTAAATTAAA
92865565 AAAATATAAACTTAAA
1 AAAAT-TAAA-TTAAA
* *
92865581 AGAACTAAATT
1 AAAATTAAATT
92865592 TATCATTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
13 5 0.15
14 13 0.38
15 8 0.24
16 8 0.24
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (14 bp):
AAAATTAAATTAAA
Found at i:92870284 original size:13 final size:13
Alignment explanation
Indices: 92870268--92870295 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92870258 TTTATTTGAA
92870268 AATTTTAAAAAAT
1 AATTTTAAAAAAT
92870281 AATTTTAAAAAAT
1 AATTTTAAAAAAT
92870294 AA
1 AA
92870296 AAATAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATTTTAAAAAAT
Found at i:92880952 original size:37 final size:37
Alignment explanation
Indices: 92880891--92881037 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
92880881 TACGTATGAT
* *
92880891 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
92880926 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
92880963 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
92881000 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
92881037 C
1 C
92881038 GAAGCTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:92881079 original size:52 final size:52
Alignment explanation
Indices: 92881000--92881314 Score: 411
Period size: 52 Copynumber: 6.2 Consensus size: 52
92880990 TAAGTGTAGC
* *
92881000 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
92881053 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
92881105 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
92881157 CAC---T---TTGTCATTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
92881203 CAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * ** *
92881249 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
92881301 CACTTTATCACTTG
1 CACTTT-TCACTTG
92881315 ATCAGAAGTA
Statistics
Matches: 234, Mismatches: 18, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
46 82 0.35
47 2 0.01
48 2 0.01
52 133 0.57
53 15 0.06
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:92881198 original size:39 final size:41
Alignment explanation
Indices: 92881118--92881253 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 41
92881108 TTTCCACTTG
* * *
92881118 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTG
1 TCACTTGATCAGATAAGTATAGCCGAAG-----ACTTATCACTTTA
*
92881164 TCATTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTA
1 TCACTTGATCAGATAAGTATAGCCGAAG-----ACTTATCACTTTA
*
92881210 TCACTTGATCAGATAAGTATAGCCGAAG-C-TATTAC-TTA
1 TCACTTGATCAGATAAGTATAGCCGAAGACTTATCACTTTA
92881248 TCACTT
1 TCACTT
92881254 TCCACTTGTC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
38 9 0.11
39 5 0.06
40 1 0.01
46 69 0.82
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (41 bp):
TCACTTGATCAGATAAGTATAGCCGAAGACTTATCACTTTA
Found at i:92881310 original size:98 final size:97
Alignment explanation
Indices: 92880999--92881320 Score: 438
Period size: 98 Copynumber: 3.3 Consensus size: 97
92880989 ATAAGTGTAG
* *
92880999 CCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCAC-TTTCACT
92881064 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
65 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
* * *
92881097 TCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCAC--
1 CCACTTATCACTTT--A----TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTT
* *
92881160 T---TTGTCATTTGATCAGATAAGTATAGCCGAAGCTA
60 TCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
* *
92881195 TCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTT-CACT
**
92881260 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
65 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
92881293 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTATCACTTGATCAGA
92881321 AGTACTCAAA
Statistics
Matches: 197, Mismatches: 15, Indels: 24
0.83 0.06 0.10
Matches are distributed among these distances:
92 39 0.20
94 1 0.01
96 1 0.01
98 116 0.59
101 1 0.01
104 39 0.20
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (97 bp):
CCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTA
Found at i:92885860 original size:44 final size:44
Alignment explanation
Indices: 92885810--92885901 Score: 184
Period size: 44 Copynumber: 2.1 Consensus size: 44
92885800 AAAAGGTGTA
92885810 TAAATCGAATTAAAAATATAGTGTTGAAAATTTTAATTAATTTT
1 TAAATCGAATTAAAAATATAGTGTTGAAAATTTTAATTAATTTT
92885854 TAAATCGAATTAAAAATATAGTGTTGAAAATTTTAATTAATTTT
1 TAAATCGAATTAAAAATATAGTGTTGAAAATTTTAATTAATTTT
92885898 TAAA
1 TAAA
92885902 AAGCTGAGTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (44 bp):
TAAATCGAATTAAAAATATAGTGTTGAAAATTTTAATTAATTTT
Found at i:92888329 original size:6 final size:6
Alignment explanation
Indices: 92888320--92888364 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
92888310 AATTGAATCT
* *
92888320 GAACCC GAACCC GAACCC GAACCC AAACCC GAACCT GAACCC GAA
1 GAACCC GAACCC GAACCC GAACCC GAACCC GAACCC GAACCC GAA
92888365 TCGAGTCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.38, C:0.44, G:0.16, T:0.02
Consensus pattern (6 bp):
GAACCC
Found at i:92891676 original size:4 final size:4
Alignment explanation
Indices: 92891667--92891719 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
92891657 ATGGTATGTC
92891667 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
92891715 ACAT A
1 ACAT A
92891720 TAAATATACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:92897263 original size:18 final size:18
Alignment explanation
Indices: 92897240--92897276 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92897230 ACTATTGAAG
92897240 TAAAGTTTGATAGTAGTT
1 TAAAGTTTGATAGTAGTT
92897258 TAAAGTTTGATAGTAGTT
1 TAAAGTTTGATAGTAGTT
92897276 T
1 T
92897277 CGAGCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (18 bp):
TAAAGTTTGATAGTAGTT
Found at i:92898348 original size:15 final size:15
Alignment explanation
Indices: 92898303--92898355 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
92898293 CCTTAAAATT
92898303 ATTTA-AAAATATAAA
1 ATTTAGAAAA-ATAAA
92898318 ATTCTAG--AAA-AAA
1 ATT-TAGAAAAATAAA
92898331 ATTTAGAAAAATAAA
1 ATTTAGAAAAATAAA
*
92898346 ATTTCGAAAA
1 ATTTAGAAAA
92898356 CGTTGTTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
12 3 0.09
13 6 0.19
14 4 0.12
15 17 0.53
16 2 0.06
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (15 bp):
ATTTAGAAAAATAAA
Found at i:92902776 original size:21 final size:22
Alignment explanation
Indices: 92902733--92902776 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
92902723 AGATATATGT
* * *
92902733 ATATATATAATATAATATTAAA
1 ATATATATAATACAACATAAAA
92902755 ATATA-ATAATACAACATAAAA
1 ATATATATAATACAACATAAAA
92902776 A
1 A
92902777 AATACATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATATATAATACAACATAAAA
Found at i:92903130 original size:3 final size:3
Alignment explanation
Indices: 92903099--92903196 Score: 117
Period size: 3 Copynumber: 32.3 Consensus size: 3
92903089 ATACACGTAC
* *
92903099 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
92903146 ATA ATA ATA ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92903193 ATA A
1 ATA A
92903197 CAAGGATATT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
2 2 0.03
3 72 0.90
4 6 0.08
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:92905101 original size:55 final size:56
Alignment explanation
Indices: 92905018--92905147 Score: 194
Period size: 55 Copynumber: 2.4 Consensus size: 56
92905008 TAAAAGCAGA
* * *
92905018 TTTTGAAAAACA-GAAATTAAAGGGCTCAACTCACCTTTCGCGATATGAGTTGA-T
1 TTTTGAAAAACATGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
92905072 TTTTGAAAAACATGAATTTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 TTTTGAAAAACATGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
92905129 TTTTGAAAAAC-TGAAATTA
1 TTTTGAAAAACATGAAATTA
92905148 CCTCAGCGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
54 12 0.18
55 37 0.54
56 7 0.10
57 12 0.18
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (56 bp):
TTTTGAAAAACATGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
Found at i:92905432 original size:89 final size:87
Alignment explanation
Indices: 92905140--92905538 Score: 433
Period size: 89 Copynumber: 4.6 Consensus size: 87
92905130 TTTGAAAAAC
*
92905140 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT-AAA
1 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
* * * **
92905204 ACTTGATTTGAAAATTAGATTT
66 ACATGAATTGAAAAATAGAAAT
* ** ***
92905226 TGAAA--A--ACAGAAAT-T-AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
1 TGAAATTACCTCAG-CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-A
*
92905284 AAACA-GAAACTG-AAAATAGAAAT
64 AAACATG-AATTGAAAAATAGAAAT
* * *
92905307 TGAAAATACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
92905372 AACATGAATTGAGAAAATAGAAAT
65 AACATGAATTGA-AAAATAGAAAT
* * * *
92905396 TGCAATTACCTCAACGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTG-AA
1 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
** * *
92905460 AGGTAGAATTTTGAAAAACAAAAAT
66 ACAT-GAA--TTGAAAAATAGAAAT
92905485 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
92905539 GTTTCTGAGA
Statistics
Matches: 260, Mismatches: 35, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
80 5 0.02
81 45 0.17
82 12 0.05
83 2 0.01
84 2 0.01
85 3 0.01
86 37 0.14
87 14 0.05
88 16 0.06
89 120 0.46
90 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (87 bp):
TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
ACATGAATTGAAAAATAGAAAT
Found at i:92907307 original size:19 final size:19
Alignment explanation
Indices: 92907278--92907332 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
92907268 ACCTCTCCAT
92907278 TTTCTTTTCTTTCGTTTTAC
1 TTTCTTTTCTTTC-TTTTAC
92907298 TTTC-TTTCTTTCTTTTA-
1 TTTCTTTTCTTTCTTTTAC
* *
92907315 TTTTTTTTGTTTGCTTTT
1 TTTCTTTTCTTT-CTTTT
92907333 GAATGAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 3 0.10
18 11 0.35
19 13 0.42
20 4 0.13
ACGTcount: A:0.04, C:0.15, G:0.05, T:0.76
Consensus pattern (19 bp):
TTTCTTTTCTTTCTTTTAC
Found at i:92913795 original size:21 final size:22
Alignment explanation
Indices: 92913752--92913795 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
92913742 ATATATGTAT
* * *
92913752 ATATATATAATATAATATTAAA
1 ATATATATAATACAACATAAAA
92913774 ATATA-ATAATACAACATAAAA
1 ATATATATAATACAACATAAAA
92913795 A
1 A
92913796 AAATACATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATATATAATACAACATAAAA
Found at i:92914121 original size:23 final size:23
Alignment explanation
Indices: 92914103--92914159 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
92914093 TGTATACACG
92914103 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* *
92914126 TACATAATAATAATAATAATAGTAA
1 TACATAATAAAAAT-AT-ATACTAA
92914151 TAC-TAATAA
1 TACATAATAA
92914160 TACTAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 13 0.43
24 8 0.27
25 9 0.30
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.32
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:92914128 original size:29 final size:25
Alignment explanation
Indices: 92914083--92914161 Score: 72
Period size: 29 Copynumber: 3.0 Consensus size: 25
92914073 ATTAAATATG
*
92914083 AAAATATATATGTATACACGTACATAATA
1 AAAATATATAT-AATACA--TA-ATAATA
92914112 AAAATATATACTAATACATAATAATA
1 AAAATATATA-TAATACATAATAATA
*
92914138 ATAATA-ATAGTAATAC-TAATAATA
1 AAAATATATA-TAATACATAATAATA
92914162 CTAATAATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
24 8 0.17
25 9 0.20
26 11 0.24
27 2 0.04
29 15 0.33
30 1 0.02
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.32
Consensus pattern (25 bp):
AAAATATATATAATACATAATAATA
Found at i:92914137 original size:3 final size:3
Alignment explanation
Indices: 92914106--92914179 Score: 69
Period size: 3 Copynumber: 24.3 Consensus size: 3
92914096 ATACACGTAC
* * *
92914106 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * *
92914153 CTA ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
92914180 CAAGGATATT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.04
3 48 0.86
4 6 0.11
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:92914773 original size:21 final size:21
Alignment explanation
Indices: 92914747--92914789 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
92914737 CACCGTAAGT
* * *
92914747 TTTTTTCTTTTTTTTTTTATA
1 TTTTTTATTATTTTTTATATA
92914768 TTTTTTATTATTTTTTATATA
1 TTTTTTATTATTTTTTATATA
92914789 T
1 T
92914790 ATGTATATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTTATTATTTTTTATATA
Found at i:92928117 original size:21 final size:20
Alignment explanation
Indices: 92928093--92928138 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
92928083 TTGAATTTGG
92928093 TTAATT-GATCGGTAAATCGAA
1 TTAATTCGATCGG-AAATCG-A
*
92928114 TTAATTCGATCGGAAGTCGA
1 TTAATTCGATCGGAAATCGA
92928134 TTAAT
1 TTAAT
92928139 AATTTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 11 0.48
22 6 0.26
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
TTAATTCGATCGGAAATCGA
Found at i:92929013 original size:18 final size:17
Alignment explanation
Indices: 92928985--92929025 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
92928975 CGTTCTTTAA
*
92928985 AATTGTTATTTAATTTTTT
1 AATT-TTATTTAA-TATTT
92929004 AATTTTATTTAATATTT
1 AATTTTATTTAATATTT
92929021 AATTT
1 AATTT
92929026 AATGTCACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 8 0.38
19 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
AATTTTATTTAATATTT
Found at i:92929274 original size:21 final size:21
Alignment explanation
Indices: 92929224--92929274 Score: 50
Period size: 21 Copynumber: 2.3 Consensus size: 21
92929214 CTCAATTTTT
92929224 ATAATTTTTTTAATATCTCTTTA
1 ATAATTTTTTTAATA--TCTTTA
* *
92929247 TTTATTTTTTATAATA-CTTTA
1 ATAATTTTTT-TAATATCTTTA
92929268 ATAATTT
1 ATAATTT
92929275 GTATTCTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
21 10 0.43
23 8 0.35
24 5 0.22
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (21 bp):
ATAATTTTTTTAATATCTTTA
Found at i:92929330 original size:19 final size:19
Alignment explanation
Indices: 92929306--92929347 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
92929296 TTGCAATTTC
*
92929306 TTTTTTACAA-TATTTATAA
1 TTTTTTACAACT-TTTAAAA
92929325 TTTTTTACAACTTTTAAAA
1 TTTTTTACAACTTTTAAAA
92929344 TTTT
1 TTTT
92929348 AAAATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTTACAACTTTTAAAA
Found at i:92929864 original size:17 final size:17
Alignment explanation
Indices: 92929827--92929865 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
92929817 AAATTGTTAA
* *
92929827 ATTTTAGAATTTTTTAT
1 ATTTTAGAATTTTTGAG
*
92929844 ATTTTATAATTTTTGAG
1 ATTTTAGAATTTTTGAG
92929861 ATTTT
1 ATTTT
92929866 CTAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (17 bp):
ATTTTAGAATTTTTGAG
Found at i:92934247 original size:2 final size:2
Alignment explanation
Indices: 92934242--92934273 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
92934232 GAGAGTAGCA
*
92934242 AG AG AG AG AG AG AG AG AG AG AG AC AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
92934274 TGATAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:92939880 original size:14 final size:14
Alignment explanation
Indices: 92939861--92939887 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92939851 ATATTTTAAA
92939861 TTATTTAAATATTC
1 TTATTTAAATATTC
92939875 TTATTTAAATATT
1 TTATTTAAATATT
92939888 TGATTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTAAATATTC
Found at i:92939895 original size:13 final size:14
Alignment explanation
Indices: 92939863--92939895 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92939853 ATTTTAAATT
*
92939863 ATTTAAATATTCTT
1 ATTTAAATATTCTG
92939877 ATTTAAATATT-TG
1 ATTTAAATATTCTG
92939890 ATTTAA
1 ATTTAA
92939896 TTGAGTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (14 bp):
ATTTAAATATTCTG
Found at i:92947007 original size:4 final size:4
Alignment explanation
Indices: 92947000--92947025 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
92946990 ATTGATTTGC
92947000 ATCT ATCT ATCT ATCT ATCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT AT
92947026 ATATATATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (4 bp):
ATCT
Found at i:92949667 original size:8 final size:8
Alignment explanation
Indices: 92949654--92949678 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
92949644 AAAAATTAAT
92949654 ATTTGAAA
1 ATTTGAAA
92949662 ATTTGAAA
1 ATTTGAAA
92949670 ATTTGAAA
1 ATTTGAAA
92949678 A
1 A
92949679 AGAAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (8 bp):
ATTTGAAA
Found at i:92950545 original size:22 final size:25
Alignment explanation
Indices: 92950500--92950549 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
92950490 GCCACGTCAG
*
92950500 TTTTTTAATAGTAGAAATAGATAAA
1 TTTTTTAATAGTAGAAATAAATAAA
92950525 TTTTTTAATAG-A-AAA-AAATAAA
1 TTTTTTAATAGTAGAAATAAATAAA
92950547 TTT
1 TTT
92950550 ACTCTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 3 0.12
24 1 0.04
25 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (25 bp):
TTTTTTAATAGTAGAAATAAATAAA
Found at i:92952587 original size:2 final size:2
Alignment explanation
Indices: 92952580--92952614 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
92952570 GATTTCCCTC
92952580 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
92952615 TTTTGGTACG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:92957340 original size:39 final size:39
Alignment explanation
Indices: 92957281--92957387 Score: 169
Period size: 39 Copynumber: 2.7 Consensus size: 39
92957271 ATCGTGATTT
** *
92957281 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
92957320 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
92957359 GAAGCCTGGAGGCTAACTGAAGCACATAA
1 GAAGCCCGAAGGCTAACTGAAGCACATAA
92957388 TAGCTGAACT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:92957363 original size:21 final size:21
Alignment explanation
Indices: 92957299--92957363 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
92957289 AAATCTAGCT
92957299 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
** *
92957320 GAAGC-CCGAAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
92957338 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
92957359 GAAGC
1 GAAGC
92957364 CTGGAGGCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 7 0.20
21 13 0.37
ACGTcount: A:0.40, C:0.22, G:0.26, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:92965376 original size:36 final size:36
Alignment explanation
Indices: 92965328--92965406 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
92965318 TATAATACCA
* * *
92965328 GACATAATCATATACGTCAATCATAATCTCAAGCTT
1 GACATAAGCATATACATAAATCATAATCTCAAGCTT
92965364 GACATAAGCATATACATAAATCATAATCTCAAGCTT
1 GACATAAGCATATACATAAATCATAATCTCAAGCTT
*
92965400 AACATAA
1 GACATAA
92965407 CTCATTTGGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (36 bp):
GACATAAGCATATACATAAATCATAATCTCAAGCTT
Found at i:92965754 original size:34 final size:34
Alignment explanation
Indices: 92965716--92965859 Score: 148
Period size: 34 Copynumber: 4.3 Consensus size: 34
92965706 AGTCCAACCA
** * *
92965716 AACACACCAGGCGCTCACACGAGTCAA-CCTTTCC
1 AACACACCAGATGCTCACATGAGTCAATCC-CTCC
*
92965750 AACACACCAGATGCTCACATGAGTTAATCCCTCC
1 AACACACCAGATGCTCACATGAGTCAATCCCTCC
*
92965784 AACACACCAGATGCTCACATGAGTTAATCCCTCC
1 AACACACCAGATGCTCACATGAGTCAATCCCTCC
* * * * * **
92965818 AACATATCA-ATGCTCATAAGAGTTAATCCAACC
1 AACACACCAGATGCTCACATGAGTCAATCCCTCC
92965851 AACACACCA
1 AACACACCA
92965860 ATGTTCATAA
Statistics
Matches: 96, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
33 27 0.28
34 67 0.70
35 2 0.02
ACGTcount: A:0.35, C:0.35, G:0.11, T:0.19
Consensus pattern (34 bp):
AACACACCAGATGCTCACATGAGTCAATCCCTCC
Found at i:92965841 original size:33 final size:33
Alignment explanation
Indices: 92965747--92965890 Score: 162
Period size: 33 Copynumber: 4.3 Consensus size: 33
92965737 AGTCAACCTT
*
92965747 TCCAACACACCAGATGCTCACATGAGTTAATCCC
1 TCCAACACACCA-ATGCTCACAAGAGTTAATCCC
*
92965781 TCCAACACACCAGATGCTCACATGAGTTAATCCC
1 TCCAACACACCA-ATGCTCACAAGAGTTAATCCC
* * * *
92965815 TCCAACATATCAATGCTCATAAGAGTTAATCCA
1 TCCAACACACCAATGCTCACAAGAGTTAATCCC
* * * * *
92965848 ACCAACACACCAATGTTCATAAGAGCTAATCCA
1 TCCAACACACCAATGCTCACAAGAGTTAATCCC
*
92965881 ACCAACACAC
1 TCCAACACAC
92965891 TAAACAGAGT
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
33 56 0.56
34 44 0.44
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.20
Consensus pattern (33 bp):
TCCAACACACCAATGCTCACAAGAGTTAATCCC
Found at i:92965855 original size:67 final size:68
Alignment explanation
Indices: 92965708--92965859 Score: 173
Period size: 68 Copynumber: 2.2 Consensus size: 68
92965698 ACATTGTCAG
* * *
92965708 TCCAACCAAACACACCAGGCGCTCACACGAGTCAACCTTTCCAACACACCAGATGCTCACATGAG
1 TCCAACC-AACACACCAGACGCTCACACGAGTCAACCTCTCCAACACACCAGATGCTCACAAGAG
92965773 TTAA
65 TTAA
** * * * * * *
92965777 TCCCTCCAACACACCAGATGCTCACATGAGTTAATCC-CTCCAACATATCA-ATGCTCATAAGAG
1 TCCAACCAACACACCAGACGCTCACACGAGTCAA-CCTCTCCAACACACCAGATGCTCACAAGAG
92965840 TTAA
65 TTAA
92965844 TCCAACCAACACACCA
1 TCCAACCAACACACCA
92965860 ATGTTCATAA
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
67 29 0.42
68 33 0.48
69 7 0.10
ACGTcount: A:0.36, C:0.36, G:0.11, T:0.18
Consensus pattern (68 bp):
TCCAACCAACACACCAGACGCTCACACGAGTCAACCTCTCCAACACACCAGATGCTCACAAGAGT
TAA
Found at i:92967862 original size:13 final size:13
Alignment explanation
Indices: 92967844--92967874 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92967834 CACTACTTTA
92967844 GTTTCCAATTCAT
1 GTTTCCAATTCAT
92967857 GTTTCCAATTCAT
1 GTTTCCAATTCAT
*
92967870 ATTTC
1 GTTTC
92967875 ACTCCATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.06, T:0.48
Consensus pattern (13 bp):
GTTTCCAATTCAT
Done.