Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 3 of 295
Found at i:754544 original size:19 final size:18
Alignment explanation
Indices: 754520--754567 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
754510 ACGTAAAAAG
754520 TAAAAAGTAAAAGATGAAA
1 TAAAAA-TAAAAGATGAAA
754539 TAAAAATAAAAAGATGAAA
1 TAAAAAT-AAAAGATGAAA
754558 TAAAAATAAA
1 TAAAAATAAA
754568 TAACAAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAAGATGAAA
Found at i:755489 original size:16 final size:16
Alignment explanation
Indices: 755459--755506 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
755449 GAAAATTAAT
755459 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
755474 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
755491 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
755506 A
1 A
755507 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:755505 original size:11 final size:11
Alignment explanation
Indices: 755450--755520 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
755440 ATAGCTTAAG
*
755450 AAAATTAATAT
1 AAAATTAAAAT
755461 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
755473 AATAA-T-AATT
1 AA-AATTAAAAT
*
755483 AAAAAT-AAAT
1 AAAATTAAAAT
755493 AAAATTAAAAT
1 AAAATTAAAAT
*
755504 AAACTTAAAAT
1 AAAATTAAAAT
*
755515 AGAATT
1 AAAATT
755521 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:757030 original size:30 final size:30
Alignment explanation
Indices: 756995--757064 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
756985 TTTCATCAAT
*
756995 TTTTTAGGGATTAACTTGAATTTATTTTCA
1 TTTTTAAGGATTAACTTGAATTTATTTTCA
757025 TTTTTAAGGATTAACTTGAATTTATTTTCA
1 TTTTTAAGGATTAACTTGAATTTATTTTCA
*
757055 TTTTTGAGGA
1 TTTTTAAGGA
757065 CTAAAATGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.27, C:0.06, G:0.14, T:0.53
Consensus pattern (30 bp):
TTTTTAAGGATTAACTTGAATTTATTTTCA
Found at i:758123 original size:28 final size:28
Alignment explanation
Indices: 758091--758149 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
758081 TTGATAAACA
*
758091 GAAAAATTAAATAATT-AAAATAAATATT
1 GAAAAATTAAA-AATTAAAAATAAATACT
* *
758119 GAAAAGTTAAACATTAAAAATAAATACT
1 GAAAAATTAAAAATTAAAAATAAATACT
758147 GAA
1 GAA
758150 TTTAAGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 3 0.11
28 24 0.89
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (28 bp):
GAAAAATTAAAAATTAAAAATAAATACT
Found at i:766920 original size:3 final size:3
Alignment explanation
Indices: 766912--766936 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
766902 GTGAACTCAC
766912 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
766937 CACCACTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:767961 original size:12 final size:12
Alignment explanation
Indices: 767944--767970 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
767934 AGAGAGGTGG
767944 AGAGGCAAAGGA
1 AGAGGCAAAGGA
767956 AGAGGCAAAGGA
1 AGAGGCAAAGGA
767968 AGA
1 AGA
767971 AGCACACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.41, T:0.00
Consensus pattern (12 bp):
AGAGGCAAAGGA
Found at i:771071 original size:14 final size:14
Alignment explanation
Indices: 771052--771083 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
771042 CAGCCATGCA
771052 GTGCCTCAATTTAT
1 GTGCCTCAATTTAT
771066 GTGCCTCAATTTAT
1 GTGCCTCAATTTAT
771080 GTGC
1 GTGC
771084 TGATATAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (14 bp):
GTGCCTCAATTTAT
Found at i:774163 original size:3 final size:3
Alignment explanation
Indices: 774086--774154 Score: 95
Period size: 3 Copynumber: 23.3 Consensus size: 3
774076 GTACTTTTGC
774086 TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
774133 CAT TTT TAC TAT TAT TAG TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
774155 GGTATTATTG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:774343 original size:35 final size:36
Alignment explanation
Indices: 774285--774366 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 36
774275 AATTTGTTTA
*
774285 ATATATATATACGTATACTCATATTTCT-TTTTTATAT
1 ATATATATATACATATAC-CATATTT-TATTTTTATAT
*
774322 ATATCTATATACATATA-CATATTTTATTTTTATA-
1 ATATATATATACATATACCATATTTTATTTTTATAT
774356 AGTATATATAT
1 A-TATATATAT
774367 TTATATGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
34 2 0.05
35 23 0.57
37 15 0.38
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.52
Consensus pattern (36 bp):
ATATATATATACATATACCATATTTTATTTTTATAT
Found at i:776654 original size:12 final size:12
Alignment explanation
Indices: 776639--776679 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
776629 AAGGAAAAGA
776639 AAAAAACAAAAT
1 AAAAAACAAAAT
*
776651 AAAAATCAAAAT
1 AAAAAACAAAAT
* *
776663 AAAAAATAAAAG
1 AAAAAACAAAAT
776675 AAAAA
1 AAAAA
776680 GAGAAATCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.83, C:0.05, G:0.02, T:0.10
Consensus pattern (12 bp):
AAAAAACAAAAT
Found at i:778508 original size:43 final size:43
Alignment explanation
Indices: 778461--778597 Score: 97
Period size: 42 Copynumber: 3.2 Consensus size: 43
778451 AGAAGCAGAT
778461 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGC
* * * * * * *
778504 CTTG-CATCC-ATCGATT-GCAGTGGAGCTAG-T-GAAGACAGCAGAT
1 CTTGCCTTCCTA-C-ATTAACAGCGAAGC-AGATCGAAAACA-AAG-C
* *
778547 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAAC-AAGC
1 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGC
*
778589 TTTGCCTTC
1 CTTGCCTTC
778598 ATTGGTTACA
Statistics
Matches: 67, Mismatches: 17, Indels: 21
0.64 0.16 0.20
Matches are distributed among these distances:
41 7 0.10
42 23 0.34
43 19 0.28
44 13 0.19
45 5 0.07
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (43 bp):
CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGC
Found at i:778553 original size:86 final size:85
Alignment explanation
Indices: 778369--778586 Score: 280
Period size: 86 Copynumber: 2.5 Consensus size: 85
778359 AATGAAGTTA
* * * *
778369 CAGATCTTGCCTTTCTGCATTGATAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTT
1 CAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAACCTTGCATCTCTCAGTT
* *
778434 GTAGTGGAGCTGGTTAAAGAAG
64 GCAGTGGAGCTAGTTAAAGAAG
*
778456 CAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCATC-CATC-GAT
1 CAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAA-CCTTGCATCTC-TCAG-T
*
778519 TGCAGTGGAGCTAG-TGAAGACAG
63 TGCAGTGGAGCTAGTTAAAGA-AG
*
778542 CAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAA
1 CAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAA
778587 GCTTTGCCTT
Statistics
Matches: 117, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
85 12 0.10
86 69 0.59
87 36 0.31
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (85 bp):
CAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAACCTTGCATCTCTCAGTTGC
AGTGGAGCTAGTTAAAGAAG
Found at i:778734 original size:83 final size:82
Alignment explanation
Indices: 778628--778905 Score: 278
Period size: 83 Copynumber: 3.3 Consensus size: 82
778618 TTAAAGATTC
778628 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
1 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAA-GATAGTAATCCTATCTCCTTGAGATT
*
778693 ACAATGGAGCGGATTAAA
65 ACAATGGAGCAGATTAAA
* ** * * * * *
778711 GGATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC-ACATCAG--GTCTTATCTCCCTGAGAT
1 GGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCAAGAT-AGTAATCCTATCTCCTTGAGAT
* * * **
778772 TATAGTGGAACAGACCAAA
64 TACAATGGAGCAGATTAAA
778791 GAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCT
1 G-------GATCTTATCTCCCTGAGATTACAGCGGAGCAGATC-AAGATAGTAATCCTATCTCCT
778856 TGAGATTACAATGGAGCAGATTAAA
58 TGAGATTACAATGGAGCAGATTAAA
*
778881 GGATCTTATCTCTCTGA-AGTTACAG
1 GGATCTTATCTCCCTGAGA-TTACAG
778906 TAGAGAAGAT
Statistics
Matches: 152, Mismatches: 28, Indels: 30
0.72 0.13 0.14
Matches are distributed among these distances:
80 29 0.19
81 2 0.01
82 5 0.03
83 51 0.34
87 29 0.19
88 3 0.02
89 3 0.02
90 30 0.20
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (82 bp):
GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGATAGTAATCCTATCTCCTTGAGATTA
CAATGGAGCAGATTAAA
Found at i:778837 original size:46 final size:43
Alignment explanation
Indices: 778603--779123 Score: 310
Period size: 44 Copynumber: 12.1 Consensus size: 43
778593 CCTTCATTGG
* * * *
778603 TTACAGTGGAGCTGGTTAAAGATTCGGATCTTATCTCCCTGAGA
1 TTACAGTGGAGCAGATCAAAGA-TCAGATCTTATCTCCCTGAGA
* * * *
778647 TTACAGCGGAGCAGATCAAGGAT-AGTAATCCTATCTCCTTGAGA
1 TTACAGTGGAGCAGATCAAAGATCAG--ATCTTATCTCCCTGAGA
* * * *
778691 TTACAATGGAGCGGATTAAAG----GATCTTATCTCTCTGA-A
1 TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
* * * *
778729 GTTACAGTAGAGAAGATC--ACATCAGGTCTTATCTCCCTGAGA
1 -TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
* * *
778771 TTATAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGA
1 TTACAGTGGAGCAGATCAAAG-A--TCAGATCTTATCTCCCTGAGA
* * *
778817 TTACAGCGGAGCAGATCAAAGAT-AGTAATCCTATCTCCTTGAGA
1 TTACAGTGGAGCAGATCAAAGATCAG--ATCTTATCTCCCTGAGA
* * *
778861 TTACAATGGAGCAGATTAAAG----GATCTTATCTCTCTGA-A
1 TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
* * * *
778899 GTTACAGTAGAGAAGATC--ACATCAGGTCTTATCTCCCTGAGA
1 -TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
** * * *
778941 TTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGG
1 TTACAGTGGAGCAGATCAAAG-A--TCAGATCTTATCTCCCTGAGA
** *
778987 TTACAGTGGAGCAGATTGAAGCCA-GAGATCTTATCTCCCTGAGA
1 TTACAGTGGAGCAGATCAAAG--ATCAGATCTTATCTCCCTGAGA
* * *
779031 TTACAGCGGAGCAGATCGAAA-A-CACTATCCTATCTCCCTGA-A
1 TTACAGTGGAGCAGATC-AAAGATCA-GATCTTATCTCCCTGAGA
* * * * *
779073 GTTACAGTGGAGCGGATTAAA-ATAAAGGATCTTATCTCTCTGAGG
1 -TTACAGTGGAGCAGATCAAAGAT-CA-GATCTTATCTCCCTGAGA
779118 TTACAG
1 TTACAG
779124 CAGAGTAGAT
Statistics
Matches: 362, Mismatches: 82, Indels: 66
0.71 0.16 0.13
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 49 0.14
41 55 0.15
42 12 0.03
43 32 0.09
44 135 0.37
45 3 0.01
46 71 0.20
47 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
Found at i:778911 original size:170 final size:170
Alignment explanation
Indices: 778629--779046 Score: 685
Period size: 170 Copynumber: 2.5 Consensus size: 170
778619 TAAAGATTCG
*
778629 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
*
778694 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
*
778759 ATCTCCCTGAGATTATAGTGGAACAGACCAAAGAATTTCA
131 ATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA
778799 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
778864 CAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
* *
778929 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCG
131 ATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA
* * ** ** * *
778969 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCTGAGATT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTA-ATCCTATCTCCTTGAGATT
**
779033 ACAGCGGAGCAGAT
65 ACAATGGAGCAGAT
779047 CGAAAACACT
Statistics
Matches: 232, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
169 1 0.00
170 231 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (170 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
CAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA
Found at i:779065 original size:87 final size:87
Alignment explanation
Indices: 778974--779135 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
778964 TTTCGGATCT
* * * *
778974 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
779038 GGAGCAGATCGAAAACACTATCC
65 AGAGCAGATCGAAAACACTATCC
* * * *
779061 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
779126 GAGTAGATCG
66 GAGCAGATCG
779136 CATCAGGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAAACACTATCC
Found at i:779239 original size:218 final size:213
Alignment explanation
Indices: 778798--779239 Score: 464
Period size: 218 Copynumber: 2.0 Consensus size: 213
778788 AAAGAATTTC
* * *
778798 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
*
778863 ACAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
* * ** * * *
778928 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGA-CGTATCTCCCTAAAGTTACAG
* ** *
778993 TGGAGCAGATTGAAGCCAG
195 CGGAGCAGACAGAAGACAG
779012 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAA-ACACT-ATCCTATCTCCCTGA-AG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATC-AAAGACACTAATCCTATCTCCCTGAGA-
* * * * *
779074 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCAT
64 TTACAATGGAGCAGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACAT
* * * * *
779139 CAGGTCTTATTTCCCTGAAGA-TGCAGTGGAACAGACTGAAA-ACAATAAGG-CGTGTCTCCTTA
124 CAGGTCTTATCTCCCTG-AGATTACAGTGGAACAGAC-CAAAGA-AATAAGGACGTATCTCCCTA
** * *
779201 AAGTTGTAGCGGAGCGGACAGAAGATAG
186 AAGTTACAGCGGAGCAGACAGAAGACAG
*
779229 TGATTCTTATC
1 AGA-TCTTATC
779240 ATGTCTAATC
Statistics
Matches: 187, Mismatches: 30, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
212 1 0.01
213 27 0.14
214 40 0.21
215 3 0.02
217 29 0.16
218 77 0.41
219 10 0.05
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (213 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGACGTATCTCCCTAAAGTTACAGC
GGAGCAGACAGAAGACAG
Found at i:779443 original size:86 final size:86
Alignment explanation
Indices: 779316--779504 Score: 306
Period size: 86 Copynumber: 2.2 Consensus size: 86
779306 TCTCGGTTGT
* * *
779316 AGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCTTACATTAACAGCGAAGCAGATCGAAAACAA
1 AGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCAAAAACAA
779381 AGCCTTGCATCCATCGATTGC
66 AGCCTTGCATCCATCGATTGC
* *
779402 AGTGGAGCTAGTTAAAGAAGCAGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATCAAAAACAA
1 AGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCAAAAACAA
* *
779467 AGCCTTGCCTCCATCGGTTGC
66 AGCCTTGCATCCATCGATTGC
*
779488 ATTGGAGCTGGTTAAAG
1 AGTGGAGCTGGTTAAAG
779505 GTTACAGATT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 94 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (86 bp):
AGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCAAAAACAA
AGCCTTGCATCCATCGATTGC
Found at i:781504 original size:3 final size:3
Alignment explanation
Indices: 781432--781495 Score: 92
Period size: 3 Copynumber: 21.3 Consensus size: 3
781422 GTACTTTTGC
* *
781432 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
781480 TAC TAT TAT TAG TAT T
1 TAT TAT TAT TAT TAT T
781496 GGTATTATTG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:781680 original size:37 final size:36
Alignment explanation
Indices: 781626--781708 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 36
781616 AATTTGTTTA
*
781626 ATATATATATACGTATACTCATATTTCT-TTTTTATAT
1 ATATATATATACATATA--CATATTTCTATTTTTATAT
* *
781663 ATATCTATATACATATACATATTTTTATTTTTATA-
1 ATATATATATACATATACATATTTCTATTTTTATAT
781698 AGTATATATAT
1 A-TATATATAT
781709 TTATATGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 9 0.22
36 16 0.40
37 15 0.38
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.53
Consensus pattern (36 bp):
ATATATATATACATATACATATTTCTATTTTTATAT
Found at i:781966 original size:18 final size:19
Alignment explanation
Indices: 781931--781969 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
781921 TTTATACACC
781931 TATATATATACGTACATATT
1 TATATATATAC-TACATATT
*
781951 TATATATATA-TGCATATT
1 TATATATATACTACATATT
781969 T
1 T
781970 TTCCTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (19 bp):
TATATATATACTACATATT
Found at i:785398 original size:30 final size:30
Alignment explanation
Indices: 785364--785420 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
785354 ATTTAATAAG
785364 TAAATGCCTCTAAAATAATAACAAAATCAA
1 TAAATGCCTCTAAAATAATAACAAAATCAA
*
785394 TAAATGCCTTTAAAATAATAACAAAAT
1 TAAATGCCTCTAAAATAATAACAAAAT
785421 TAACAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (30 bp):
TAAATGCCTCTAAAATAATAACAAAATCAA
Found at i:788412 original size:22 final size:24
Alignment explanation
Indices: 788384--788431 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
788374 AACTATTAAA
*
788384 ATAAT-AAAAT-TATATTTTAATT
1 ATAATAAAAATATATAATTTAATT
788406 ATAATAAAAATATATAATTTAATT
1 ATAATAAAAATATATAATTTAATT
788430 AT
1 AT
788432 GATATTTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.22
23 5 0.22
24 13 0.57
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAATAAAAATATATAATTTAATT
Found at i:790789 original size:20 final size:20
Alignment explanation
Indices: 790764--790804 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
790754 ATCAATCAGG
790764 TTCTTTAGTTAGTTTAGTGT
1 TTCTTTAGTTAGTTTAGTGT
790784 TTCTTTAGTTAGTTTAGTGT
1 TTCTTTAGTTAGTTTAGTGT
790804 T
1 T
790805 GTTTTGAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.05, G:0.20, T:0.61
Consensus pattern (20 bp):
TTCTTTAGTTAGTTTAGTGT
Found at i:797778 original size:18 final size:18
Alignment explanation
Indices: 797755--797789 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
797745 TGCTACTTAT
797755 ATTTGGT-TTTAATGTTTA
1 ATTTGGTATTTAA-GTTTA
797773 ATTTGGTATTTAAGTTT
1 ATTTGGTATTTAAGTTT
797790 TTTTTTGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (18 bp):
ATTTGGTATTTAAGTTTA
Found at i:806926 original size:9 final size:9
Alignment explanation
Indices: 806905--806960 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
806895 ATCGCCATTG
*
806905 TCGTCACCA
1 TCGTCATCA
*
806914 TCATCATCA
1 TCGTCATCA
*
806923 TCATCAGTC-
1 TCGTCA-TCA
806932 TCGTCATCA
1 TCGTCATCA
*
806941 TCGTCATCG
1 TCGTCATCA
806950 TCGTCATCA
1 TCGTCATCA
806959 TC
1 TC
806961 CTCTTCCTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.21, C:0.36, G:0.11, T:0.32
Consensus pattern (9 bp):
TCGTCATCA
Found at i:806940 original size:15 final size:16
Alignment explanation
Indices: 806914--806958 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
806904 GTCGTCACCA
*
806914 TCATCATCATCATCAG
1 TCATCGTCATCATCAG
806930 TC-TCGTCATCATC-G
1 TCATCGTCATCATCAG
*
806944 TCATCGTCGTCATCA
1 TCATCGTCATCATCA
806959 TCCTCTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 3 0.12
15 20 0.80
16 2 0.08
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (16 bp):
TCATCGTCATCATCAG
Found at i:809507 original size:26 final size:27
Alignment explanation
Indices: 809469--809522 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
809459 GCCCAATCCT
809469 AAATCTACTTTTTAGCTAAAAATGTTA
1 AAATCTACTTTTTAGCTAAAAATGTTA
809496 AAATCTACTTTTTAGCTAAAAATGTTA
1 AAATCTACTTTTTAGCTAAAAATGTTA
809523 TCTTAGTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (27 bp):
AAATCTACTTTTTAGCTAAAAATGTTA
Found at i:812892 original size:30 final size:30
Alignment explanation
Indices: 812828--812893 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
812818 TAATTCATGG
** *
812828 TAAAATTCATTTTTTCCCCTCAAATATGAA
1 TAAAATTCATTTAGTCCCCTCAAAAATGAA
*
812858 -AAAATTCTATTTAGTCCCTTCAAAAAT-AA
1 TAAAATTC-ATTTAGTCCCCTCAAAAATGAA
812887 TAAAATT
1 TAAAATT
812894 AGAAATTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (30 bp):
TAAAATTCATTTAGTCCCCTCAAAAATGAA
Found at i:813406 original size:102 final size:102
Alignment explanation
Indices: 813231--813511 Score: 519
Period size: 102 Copynumber: 2.8 Consensus size: 102
813221 GGTTTAAAAC
* *
813231 ATTTCACCACTCGTACAGATGTAGTTCGTG-TAATACAAGCAATTTTCCACTATAGAAACGAGGT
1 ATTTCACCACTCGTACAGAAGTAGTTCGTGTTAATACAAGCAATTTTCCACCATAGAAACGAGGT
813295 TTGTACATACATATATGCATGCATGCATACATAGAGT
66 TTGTACATACATATATGCATGCATGCATACATAGAGT
813332 ATTTCACCACTCGTACAGAAGTAGTTCGTGTTAATACAAGCAATTTTCCACCATAGAAACGAGGT
1 ATTTCACCACTCGTACAGAAGTAGTTCGTGTTAATACAAGCAATTTTCCACCATAGAAACGAGGT
*
813397 TTGTGCATACATATATGCATGCATGCATACATAGAGT
66 TTGTACATACATATATGCATGCATGCATACATAGAGT
*
813434 ATTTCACCACTCGTATAGAAGTAGTTCGTGTTAATACAAGCAATTTTCCACCATAGAAACGAGGT
1 ATTTCACCACTCGTACAGAAGTAGTTCGTGTTAATACAAGCAATTTTCCACCATAGAAACGAGGT
813499 TTGTACATACATA
66 TTGTACATACATA
813512 CAGACATACA
Statistics
Matches: 174, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
101 29 0.17
102 145 0.83
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (102 bp):
ATTTCACCACTCGTACAGAAGTAGTTCGTGTTAATACAAGCAATTTTCCACCATAGAAACGAGGT
TTGTACATACATATATGCATGCATGCATACATAGAGT
Found at i:814748 original size:132 final size:132
Alignment explanation
Indices: 814508--814864 Score: 425
Period size: 132 Copynumber: 2.7 Consensus size: 132
814498 AAAAGTTTTT
* * * * * **
814508 GAAGTGTCAGT-TGCCCAAAGCCGATAGACCCCTCAACATGTCCAATATTATCCCCAATCAAGCC
1 GAAGTGTCA-TCTACCCAAAGCCAACAAACCCCTCAACATGTCCAGTATTATCCCCAATCGGGCC
* * * *
814572 GAGGTTTTATCTCCCAACTTAATCGGGAGCCCGAGTACATGAGGCTAC-CTAAAGAAGCGACAAA
65 GAGGTTTTATCTCCCAACTTAGTCGAGAGCCAGAGTACACGAGGCTACGC-AAAGAAGCGACAAA
814636 TTTA
129 TTTA
* * * * * *
814640 GAAGTGTTATCTACCCAGAA-CCAACGAGCCCCTCAACATGTCCAGTATTGTCCTCGATCGGGCC
1 GAAGTGTCATCTACCCA-AAGCCAACAAACCCCTCAACATGTCCAGTATTATCCCCAATCGGGCC
* * *
814704 GAGGTTTTATCTCCCGACTTAGTCGAGAGCCAGAGTACACGAGGCTACGCGAAGAAGCGACAGAT
65 GAGGTTTTATCTCCCAACTTAGTCGAGAGCCAGAGTACACGAGGCTACGCAAAGAAGCGACAAAT
814769 TTA
130 TTA
* * * * *
814772 GAAGTGTCATCTACCCAAAGTCGACAAACCCCTCAACACT-TTCAGCATTATCCCCAATTGGGCC
1 GAAGTGTCATCTACCCAAAGCCAACAAACCCCTCAACA-TGTCCAGTATTATCCCCAATCGGGCC
814836 GAGGTTTTATCTCCCAACTTAGTCGAGAG
65 GAGGTTTTATCTCCCAACTTAGTCGAGAG
814865 TATGAGTACA
Statistics
Matches: 188, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
131 3 0.02
132 181 0.96
133 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (132 bp):
GAAGTGTCATCTACCCAAAGCCAACAAACCCCTCAACATGTCCAGTATTATCCCCAATCGGGCCG
AGGTTTTATCTCCCAACTTAGTCGAGAGCCAGAGTACACGAGGCTACGCAAAGAAGCGACAAATT
TA
Found at i:814872 original size:132 final size:131
Alignment explanation
Indices: 814535--814903 Score: 402
Period size: 132 Copynumber: 2.8 Consensus size: 131
814525 AAGCCGATAG
** ** * *
814535 ACCCCTCAACATGTCCAATATTATCCCCAATCAAGCCGAGGTTTTATCTCCCAACTTAATCGGGA
1 ACCCCTCAACATGTCCAGCATTATCCCCAATCGGGCCGAGGTTTTATCTCCCAACTTAGTCGAGA
* * *
814600 GCCCGAGTACATGAGGCTACCTAAAGAAGCGACAAATTTAGAAGTGTTATCTACCCAGAACCAAC
66 G-CAGAGTACACGAGGCTACCTAAAGAAGCGACAAATTTAGAAGTGTCATCTACCCAGAACCAAC
*
814665 GA
130 AA
* * * * * *
814667 GCCCCTCAACATGTCCAGTATTGTCCTCGATCGGGCCGAGGTTTTATCTCCCGACTTAGTCGAGA
1 ACCCCTCAACATGTCCAGCATTATCCCCAATCGGGCCGAGGTTTTATCTCCCAACTTAGTCGAGA
* * * *
814732 GCCAGAGTACACGAGGCTACGC-GAAGAAGCGACAGATTTAGAAGTGTCATCTACCCA-AAGTCG
66 G-CAGAGTACACGAGGCTAC-CTAAAGAAGCGACAAATTTAGAAGTGTCATCTACCCAGAA-CCA
814795 ACAA
128 ACAA
* *
814799 ACCCCTCAACACT-TTCAGCATTATCCCCAATTGGGCCGAGGTTTTATCTCCCAACTTAGTCGAG
1 ACCCCTCAACA-TGTCCAGCATTATCCCCAATCGGGCCGAGGTTTTATCTCCCAACTTAGTCGAG
* * ** * * *
814863 AGTATGAGTACATGAGATTGCCTGAAGAAGTGACAAATTTA
65 AGCA-GAGTACACGAGGCTACCTAAAGAAGCGACAAATTTA
814904 TTGGGTGAGA
Statistics
Matches: 199, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
131 4 0.02
132 193 0.97
133 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (131 bp):
ACCCCTCAACATGTCCAGCATTATCCCCAATCGGGCCGAGGTTTTATCTCCCAACTTAGTCGAGA
GCAGAGTACACGAGGCTACCTAAAGAAGCGACAAATTTAGAAGTGTCATCTACCCAGAACCAACA
A
Found at i:817829 original size:12 final size:12
Alignment explanation
Indices: 817790--817830 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
817780 TACAAATGTA
*
817790 ACATATACGCAT
1 ACATATACACAT
*
817802 ACACATACACAT
1 ACATATACACAT
*
817814 ACATATACATAT
1 ACATATACACAT
817826 ACATA
1 ACATA
817831 AAATGTGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (12 bp):
ACATATACACAT
Found at i:819705 original size:3 final size:3
Alignment explanation
Indices: 819697--819721 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
819687 AAGACCAAAA
819697 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
819722 TATAAGCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:819999 original size:17 final size:16
Alignment explanation
Indices: 819963--820008 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
819953 TGGGACAAAT
* *
819963 AATTTGAAATTATTAA
1 AATTTAAAATGATTAA
* *
819979 ATTTTAAAGTGATTAA
1 AATTTAAAATGATTAA
819995 AATTTAAAATGATT
1 AATTTAAAATGATT
820009 CGAACTTAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (16 bp):
AATTTAAAATGATTAA
Found at i:820832 original size:18 final size:19
Alignment explanation
Indices: 820796--820832 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
820786 ATTGAAATCC
*
820796 GTTATATAATATTCTAAAA
1 GTTATATAATATTCAAAAA
820815 GTTATA-AATATTCAAAAA
1 GTTATATAATATTCAAAAA
820833 CATTATAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
GTTATATAATATTCAAAAA
Found at i:820838 original size:19 final size:18
Alignment explanation
Indices: 820797--820840 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
820787 TTGAAATCCG
* *
820797 TTATATAATATTCTAAAAG
1 TTATA-AATATTCAAAAAA
820816 TTATAAATATTCAAAAACA
1 TTATAAATATTCAAAAA-A
820835 TTATAA
1 TTATAA
820841 GCAACAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (18 bp):
TTATAAATATTCAAAAAA
Found at i:821100 original size:20 final size:19
Alignment explanation
Indices: 821075--821132 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
821065 CTCATTCATA
821075 TTATTTATAAAACTTTTTAT
1 TTATTTATAAAA-TTTTTAT
*
821095 TTATTT-TAAAGAAGTTTTAT
1 TTATTTAT-AA-AATTTTTAT
821115 TT-TTTATAAGAATTTTTA
1 TTATTTATAA-AATTTTTA
821133 CTCATGTATC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 14 0.42
20 17 0.52
21 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (19 bp):
TTATTTATAAAATTTTTAT
Found at i:821131 original size:19 final size:19
Alignment explanation
Indices: 821073--821132 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
821063 TACTCATTCA
*
821073 TATTATTTATAA-AACTTTT
1 TATTTTTTATAAGAA-TTTT
*
821092 TATTTATTT-TAAAGAAGTTT
1 TATTT-TTTAT-AAGAATTTT
821112 TATTTTTTATAAGAATTTT
1 TATTTTTTATAAGAATTTT
821131 TA
1 TA
821133 CTCATGTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 18 0.53
20 14 0.41
21 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (19 bp):
TATTTTTTATAAGAATTTT
Found at i:824504 original size:31 final size:31
Alignment explanation
Indices: 824460--824538 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
824450 CAAATTGGAA
* * *
824460 AAACTCAAT-TACCAATTTGAATATTGAAACC
1 AAACTC-ATGTACCAAATTGAACATTAAAACC
* *
824491 AATCTCATGTACCAAATTGAACATTAAAACT
1 AAACTCATGTACCAAATTGAACATTAAAACC
*
824522 AAACTCATGTAACAAAT
1 AAACTCATGTACCAAAT
824539 ACTATATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 2 0.05
31 38 0.95
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (31 bp):
AAACTCATGTACCAAATTGAACATTAAAACC
Found at i:825038 original size:16 final size:17
Alignment explanation
Indices: 825019--825060 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
825009 TTTATTTTAT
*
825019 AATTATAACTCT-ATTA
1 AATTATAAATCTAATTA
*
825035 AATTA-AAATTTAATTA
1 AATTATAAATCTAATTA
825051 AATTATAAAT
1 AATTATAAAT
825061 ACAAGTATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 4 0.18
16 14 0.64
17 4 0.18
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTATAAATCTAATTA
Found at i:835144 original size:26 final size:25
Alignment explanation
Indices: 835115--835163 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
835105 AGTTGTACAT
*
835115 GTATTAGTTATTTTAAACTATTTTAC
1 GTATTAGTTACTTTAAA-TATTTTAC
* *
835141 GTATTATTTACTTTCAATATTTT
1 GTATTAGTTACTTTAAATATTTT
835164 TTTATATATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 6 0.30
26 14 0.70
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (25 bp):
GTATTAGTTACTTTAAATATTTTAC
Found at i:836763 original size:132 final size:132
Alignment explanation
Indices: 836522--836919 Score: 494
Period size: 131 Copynumber: 3.0 Consensus size: 132
836512 ATCATTCATT
** * * * * * **
836522 TAAAAA-TCCTTTAAAACGAAGGCGATGTTCGATATTTGGTAATACGCGGAATCGTGCCCTATCG
1 TAAAAACT-CTTTAAAACGAAGGAAATATTCGATGTTTGGAAATTCGGGGAGGCGTGCCCTATCG
* * * * * *
836586 TGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATATT
65 TGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTT
836651 TTC
130 TTC
* *
836654 TAAAAACTCTTTAAAATGAAGGAAATATTCGATGTTTGGAAATTCGTGGAGGCGTGCCCTATCGT
1 TAAAAACTCTTTAAAACGAAGGAAATATTCGATGTTTGGAAATTCGGGGAGGCGTGCCCTATCGT
* * *
836719 GCGGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCT
66 GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTT
836784 T-
131 TC
* * * * *
836785 TAAAAACTCTTTAAAGCGAAGGTAATATTCGATTTTTGGGAATTCGGGGAGTCGTGCCCTATCGT
1 TAAAAACTCTTTAAAACGAAGGAAATATTCGATGTTTGGAAATTCGGGGAGGCGTGCCCTATCGT
* * * * * *
836850 GCTGGGTTTCGATTTCCCATTTGTTCAAAATAATCAAATATTCCTTTGGAATTTCACTCGTGTTT
66 GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTT
836915 TC
131 TC
836917 TAA
1 TAA
836920 GGCAGGGTAA
Statistics
Matches: 229, Mismatches: 35, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
131 115 0.50
132 113 0.49
133 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (132 bp):
TAAAAACTCTTTAAAACGAAGGAAATATTCGATGTTTGGAAATTCGGGGAGGCGTGCCCTATCGT
GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTT
TC
Found at i:837365 original size:22 final size:23
Alignment explanation
Indices: 837316--837366 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
837306 TATTTATGTG
837316 GACCAAAATTGTTGTTTTAATAA
1 GACCAAAATTGTTGTTTTAATAA
837339 G-CCAAAA-TGTT-TTATTAA-AA
1 GACCAAAATTGTTGTT-TTAATAA
837359 TGACCAAA
1 -GACCAAA
837367 CTTCTTGGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 4 0.16
21 9 0.36
22 11 0.44
23 1 0.04
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
GACCAAAATTGTTGTTTTAATAA
Found at i:838547 original size:19 final size:19
Alignment explanation
Indices: 838525--838572 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
838515 CCATCCCATG
*
838525 CATTTGCATTGCATTGCAT
1 CATTTGCATTGCACTGCAT
*
838544 CATTTGCACTGCACTGCAT
1 CATTTGCATTGCACTGCAT
838563 CATTTGCATT
1 CATTTGCATT
838573 AAATTTTCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (19 bp):
CATTTGCATTGCACTGCAT
Found at i:841336 original size:7 final size:7
Alignment explanation
Indices: 841324--841350 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
841314 GTACTCCAAA
841324 TTTTTAT
1 TTTTTAT
841331 TTTTTAT
1 TTTTTAT
841338 TTTTTAT
1 TTTTTAT
841345 TTTTTA
1 TTTTTA
841351 AATTTTGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:842173 original size:45 final size:45
Alignment explanation
Indices: 842090--842195 Score: 142
Period size: 45 Copynumber: 2.4 Consensus size: 45
842080 TAACGGTAGT
* * *
842090 AGTAGCAGTAGCAGTATTCAACACACAAAATGATGAATCTGTAAC
1 AGTAACAGTAACAGTATTCAACACACAAAATGATGAATCGGTAAC
* * *
842135 AGTAACGGTAACAGTATTCGACACACAAAGTG-TCGAATCGGTAAC
1 AGTAACAGTAACAGTATTCAACACACAAAATGAT-GAATCGGTAAC
842180 AGTAACAGTAACAGTA
1 AGTAACAGTAACAGTA
842196 GTTGGCATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 52 0.98
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTAACAGTAACAGTATTCAACACACAAAATGATGAATCGGTAAC
Found at i:842446 original size:40 final size:40
Alignment explanation
Indices: 842402--842482 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 40
842392 CTTCATTAGA
* ** *
842402 AATTTTACAATTCAATGCAGTATACGTAACATTATTCAGT
1 AATTTCACAATTCAATGCAGTATACAAAACAATATTCAGT
** * *
842442 AATTTCACGGTTCAATTCAGTATTCAAAACAATATTCAGT
1 AATTTCACAATTCAATGCAGTATACAAAACAATATTCAGT
842482 A
1 A
842483 TCCCATAATT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (40 bp):
AATTTCACAATTCAATGCAGTATACAAAACAATATTCAGT
Found at i:843281 original size:14 final size:13
Alignment explanation
Indices: 843248--843296 Score: 64
Period size: 13 Copynumber: 3.7 Consensus size: 13
843238 TTCTTCTTTA
*
843248 CTTTGTTTTATTT
1 CTTTATTTTATTT
843261 CTTTATTTTATTT
1 CTTTATTTTATTT
843274 CATTTATTTTA-TT
1 C-TTTATTTTATTT
843287 CTTTAATTTT
1 CTTT-ATTTT
843297 TTTAACTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
12 3 0.09
13 21 0.64
14 9 0.27
ACGTcount: A:0.16, C:0.08, G:0.02, T:0.73
Consensus pattern (13 bp):
CTTTATTTTATTT
Found at i:843306 original size:27 final size:28
Alignment explanation
Indices: 843247--843306 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
843237 TTTCTTCTTT
* *
843247 ACTTTGTTTTATTTCTTTATTTTATTTC
1 ACTTTATTTTATTTCTTTATTTTATTTA
843275 A-TTTATTTTA-TTCTTTAATTTT-TTTA
1 ACTTTATTTTATTTCTTT-ATTTTATTTA
843301 ACTTTA
1 ACTTTA
843307 CAATAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
26 10 0.36
27 17 0.61
28 1 0.04
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (28 bp):
ACTTTATTTTATTTCTTTATTTTATTTA
Found at i:844550 original size:52 final size:52
Alignment explanation
Indices: 844467--844612 Score: 229
Period size: 52 Copynumber: 2.8 Consensus size: 52
844457 GCTCCTAATA
* * * *
844467 AATTTCCTTCTTATTACATTGCTATCTTTGATTAACTTATTCATGTTGAATT
1 AATTGCCTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATATGGAATT
*
844519 AATTGCCTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATATGGAGTT
1 AATTGCCTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATATGGAATT
*
844571 AATTGCCTTCTTATTGCATTTGCAATCTTTGATTAACTTATT
1 AATTGCCTTCTTATTGCA-TTGCTATCTTTGATTAACTTATT
844613 TGTTTCGAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
52 65 0.75
53 22 0.25
ACGTcount: A:0.24, C:0.16, G:0.10, T:0.50
Consensus pattern (52 bp):
AATTGCCTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATATGGAATT
Found at i:845368 original size:64 final size:64
Alignment explanation
Indices: 845290--845417 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
845280 TCATACATAA
* *
845290 CACATCTAGTTAGGAGCATTTCATTCATTTCGATCATAGCATCCTAATTACTTGACATAAGCAT
1 CACATCTAGTTAGGAACATTTCATTCATGTCGATCATAGCATCCTAATTACTTGACATAAGCAT
* * * *
845354 CACATCTAGTTAGGAACTTTTGATTCATGTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAACATTTCATTCATGTCGATCATAGCATCCTAATTACTTGACATAAGCAT
845418 AAGCCTATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTCATTCATGTCGATCATAGCATCCTAATTACTTGACATAAGCAT
Found at i:845518 original size:45 final size:45
Alignment explanation
Indices: 845442--845652 Score: 160
Period size: 45 Copynumber: 4.7 Consensus size: 45
845432 GATTCTACAG
* * * *
845442 ATCTTGTCTCCATGAAGTTGCAGTGGAGCAGATCGAAGACGGTGA
1 ATCTAGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGA
* * * ** ** *
845487 ATCTAGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCA
1 ATCTAGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGA
* * * * * ** *
845531 TTCTAG-CTCCCTAAAATTGTAGTGGAGTAG-GCTGAAGATTG-TA
1 ATCTAGTCTCCCTAAAGTTGCAGTGGAGCAGATC-GAAGACGGCGA
* *
845574 GATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCGAAGACGGCGA
1 -ATCTAGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGA
* *
845620 ATCTAGTCTTCCTAAAGTTGCAGTGAAGCAGAT
1 ATCTAGTCTCCCTAAAGTTGCAGTGGAGCAGAT
845653 TTAAGCCACC
Statistics
Matches: 122, Mismatches: 38, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
43 22 0.18
44 11 0.09
45 87 0.71
46 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (45 bp):
ATCTAGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGA
Found at i:845678 original size:133 final size:133
Alignment explanation
Indices: 845440--846012 Score: 898
Period size: 133 Copynumber: 4.3 Consensus size: 133
845430 CTGATTCTAC
* * * *
845440 AGATCTTGTCTCCATGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTAAAGT
*
845505 TGCAGTGAAGCAGATTTAAGCCACCATTCTAGCTCCCTAAAATTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAATTGTAGTGGAGTAGGCTGAAGAT
845570 TGT
131 TGT
*
845573 AGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTAAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTAAAGT
* *
845638 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTTTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAATTGTAGTGGAGTAGGCTGAAGAT
845703 TGT
131 TGT
* * *
845706 AGATCTTGTCTCCCTGAAG-TGTCAGTGGAGTAAATCGAAGACGACGAATCTAGTCTTCCTGAAG
1 AGATCTTGTCTCCCTGAAGTTG-CAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTAAAG
* *
845770 TTGCAGCGAAGCAGATTTAAGCCACCATCCTAGCTCTC-AAAAGTTGTAGTGGAGTAGGCTGAAG
65 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAA-TTGTAGTGGAGTAGGCTGAAG
845834 ATTGT
129 ATTGT
* * * * * * *
845839 AGATCTTTTCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGATGGCAAATCTTGTCTTCCTAAAGC
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTAAAGT
* *
845904 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAATTGTAGTGGAGTAGGCTGAAGAT
845969 TGT
131 TGT
* *
845972 AGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCAAAGA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCGAAGA
846013 AGCAAGCCTT
Statistics
Matches: 401, Mismatches: 35, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
132 5 0.01
133 391 0.98
134 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (133 bp):
AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTAAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAATTGTAGTGGAGTAGGCTGAAGAT
TGT
Found at i:846050 original size:88 final size:88
Alignment explanation
Indices: 845958--846179 Score: 372
Period size: 88 Copynumber: 2.5 Consensus size: 88
845948 GTAGTGGAGT
845958 AGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCAAAGAAGCAAGCCTT
1 AGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCAAAGAAGCAAGCCTT
846023 AACTCCCTAAGTCATAGGGCAAC
66 AACTCCCTAAGTCATAGGGCAAC
* *
846046 AGGCTGAAGATTGTAGATTTTGTCTCCCTGAAGTCGCAGCGGAGCAAATCAAAGAAGCAAGCCTT
1 AGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCAAAGAAGCAAGCCTT
* *
846111 AACTCCCTAAGTCGTAGGGTAAC
66 AACTCCCTAAGTCATAGGGCAAC
* * * *
846134 AGGCTAAAGATTGTAGATCTTCTCTCCTTGAAGTTGTAGCGGAGCA
1 AGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCA
846180 GTTACAGTAG
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 124 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (88 bp):
AGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGCGGAGCAAATCAAAGAAGCAAGCCTT
AACTCCCTAAGTCATAGGGCAAC
Found at i:847782 original size:26 final size:25
Alignment explanation
Indices: 847753--847801 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
847743 AGTTGTACAT
*
847753 GTATTAGTTATTTTAAACTATTTTAC
1 GTATTAGTTACTTTAAA-TATTTTAC
* *
847779 GTATTATTTACTTTCAATATTTT
1 GTATTAGTTACTTTAAATATTTT
847802 TTATATATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 6 0.30
26 14 0.70
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (25 bp):
GTATTAGTTACTTTAAATATTTTAC
Found at i:849486 original size:131 final size:132
Alignment explanation
Indices: 849158--849544 Score: 479
Period size: 131 Copynumber: 2.9 Consensus size: 132
849148 ATCATTCATT
* * * ** * * * * *
849158 TAAAAACCCTTTAAAACGAATGCGATGTTCGATATTTGGCAATACGCGGAATCGTGCCCTATCGT
1 TAAAAACTCTTTAAAATGAAGGAAATATTCGATATTTGGAAATTCGAGGAGTCGTGCCCTATCGT
* * * * * *
849223 ACTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATATTT
66 GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATATCT
849288 TC
131 TC
* * *
849290 TAAAAACTCTTTAAAATGAAGGAAATATTCGATGTTTGGAAATTCGGGGAGGCGTGCCCTATCGT
1 TAAAAACTCTTTAAAATGAAGGAAATATTCGATATTTGGAAATTCGAGGAGTCGTGCCCTATCGT
* * *
849355 GCTGGGTTGCAACTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCT
66 GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATATCT
849420 T-
131 TC
* * * * *
849421 TAAAAACTCTTTAAAGTGTAGGTAATATTCGATTTTTGGGAATTCGAGGAGTCGTGCCCTATCGT
1 TAAAAACTCTTTAAAATGAAGGAAATATTCGATATTTGGAAATTCGAGGAGTCGTGCCCTATCGT
* * * * *
849486 GCTGGGTTTCGATTTCCCATTTGTTCAAAATAATCAAATATTCCTTTGGAATTTCACTC
66 GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTC
849545 GTGTTTGCTA
Statistics
Matches: 220, Mismatches: 35, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
131 110 0.50
132 110 0.50
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (132 bp):
TAAAAACTCTTTAAAATGAAGGAAATATTCGATATTTGGAAATTCGAGGAGTCGTGCCCTATCGT
GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATATCT
TC
Found at i:852545 original size:39 final size:39
Alignment explanation
Indices: 852456--852715 Score: 378
Period size: 39 Copynumber: 6.5 Consensus size: 39
852446 ACAAAGCATG
* * *
852456 CGGGACTTTAAGCCCGGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
**
852496 CAAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
852535 CGAGACTTAGCCCGGGTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
852574 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
852613 CGGGACTTAGCCCGGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTA-----GCCCGGATATAACACCAGCACGAATGCCTT
852657 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
852696 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
852716 TATCTCACAC
Statistics
Matches: 204, Mismatches: 10, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
38 20 0.10
39 141 0.69
40 4 0.02
44 39 0.19
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:852677 original size:83 final size:83
Alignment explanation
Indices: 852467--852710 Score: 383
Period size: 83 Copynumber: 3.0 Consensus size: 83
852457 GGGACTTTAA
* * * **
852467 GCCCGGATGTAATACCAGCAC-AAAGCCTTCAAGACTTAGCCCGGATATAACACCAGCACGAATG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
*
852531 CCTTCGAGACTTAGCCC-
66 CCTTCGGGACTTAGCCCG
852548 G---GG-TATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
852609 CCTTCGGGACTTAGCCCG
66 CCTTCGGGACTTAGCCCG
852627 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
*
852692 CCTTCGGGAATTAGCCCG
66 CCTTCGGGACTTAGCCCG
852710 G
1 G
852711 ATATATATCT
Statistics
Matches: 150, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
77 12 0.08
78 58 0.39
79 1 0.01
81 1 0.01
82 2 0.01
83 76 0.51
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.17
Consensus pattern (83 bp):
GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATG
CCTTCGGGACTTAGCCCG
Found at i:858173 original size:3 final size:3
Alignment explanation
Indices: 858165--858189 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
858155 AGCTGTCCCT
858165 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
858190 AAAGCAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:860685 original size:24 final size:24
Alignment explanation
Indices: 860605--860690 Score: 61
Period size: 24 Copynumber: 3.6 Consensus size: 24
860595 ACAAGTATAT
860605 TCTCCACCACCACCACCATCC-CCA
1 TCTCCACCACCACCACC-TCCACCA
* * * *
860629 CCTCCACCATCACCCCCGCCACC-
1 TCTCCACCACCACCACCTCCACCA
* *
860652 TACT-TATCCATCACCACCTCCACCA
1 T-CTCCA-CCACCACCACCTCCACCA
*
860677 TCTCCTCCACCACC
1 TCTCCACCACCACC
860691 TTCACCAGTA
Statistics
Matches: 46, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
23 3 0.07
24 42 0.91
25 1 0.02
ACGTcount: A:0.22, C:0.60, G:0.01, T:0.16
Consensus pattern (24 bp):
TCTCCACCACCACCACCTCCACCA
Found at i:863453 original size:58 final size:56
Alignment explanation
Indices: 863301--863428 Score: 148
Period size: 56 Copynumber: 2.2 Consensus size: 56
863291 ATATTATGTC
* * * **
863301 TTTTTTTTAATCATTCAACTATAAAAAAATTGTAAAATAGACACTTAATTATTAATAA
1 TTTTTTTT-ATCACTCAATTAT-CAAAAATTACAAAATAGACACTTAATTATTAATAA
* * *
863359 TTTTTTTTGTCACTCAATTATCAAAAATTACAAAATAGTCACTTAATTATTCAATTA
1 TTTTTTTTATCACTCAATTATCAAAAATTACAAAATAGACACTTAATTATT-AATAA
863416 TATTTTTTTATCA
1 T-TTTTTTTATCA
863429 TCTAATTTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
56 26 0.44
57 15 0.25
58 18 0.31
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.45
Consensus pattern (56 bp):
TTTTTTTTATCACTCAATTATCAAAAATTACAAAATAGACACTTAATTATTAATAA
Found at i:873420 original size:42 final size:42
Alignment explanation
Indices: 873373--873456 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
873363 TCCCAAAAGT
873373 AATTTTCTAGTTTCTCCCCTGATTATAATTCAAATATATATG
1 AATTTTCTAGTTTCTCCCCTGATTATAATTCAAATATATATG
* *
873415 AATTTTCTAGTTTCTCGCCTGATTATAATTCGAATATATATG
1 AATTTTCTAGTTTCTCCCCTGATTATAATTCAAATATATATG
873457 TTACAGGGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (42 bp):
AATTTTCTAGTTTCTCCCCTGATTATAATTCAAATATATATG
Found at i:878772 original size:29 final size:29
Alignment explanation
Indices: 878735--878811 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
878725 CACGATAACG
*
878735 TAAGTGACTAAAACGTAACGTTTCAAACA
1 TAAGTGACTAAAACGTAACATTTCAAACA
* *
878764 TAAGAGACTAAAACATAACATTTCAAACA
1 TAAGTGACTAAAACGTAACATTTCAAACA
878793 TAAGTGACTAGAAA-GTAAC
1 TAAGTGACTA-AAACGTAAC
878812 CTGATGGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 39 0.93
30 3 0.07
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.22
Consensus pattern (29 bp):
TAAGTGACTAAAACGTAACATTTCAAACA
Found at i:882134 original size:20 final size:20
Alignment explanation
Indices: 882110--882150 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
882100 ACTCTTAGCT
* *
882110 TTTTTTTTTTAGAATTTTAAA
1 TTTTTTATTTA-AATGTTAAA
882131 TTTTTTATTTAAATGTTAAA
1 TTTTTTATTTAAATGTTAAA
882151 AAAAAGTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTTTATTTAAATGTTAAA
Found at i:887147 original size:20 final size:20
Alignment explanation
Indices: 887109--887147 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
887099 TTATCTTTCT
*
887109 ATTTTAATGAAAAATAATCA
1 ATTTTAATGAAAAAAAATCA
887129 ATTTTAAT-AAAAACAAATC
1 ATTTTAATGAAAAA-AAATC
887148 TCCCAATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (20 bp):
ATTTTAATGAAAAAAAATCA
Found at i:887254 original size:6 final size:6
Alignment explanation
Indices: 887243--887271 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
887233 ATTGTTTATT
887243 ATAAAA ATAAAA ATAAAA ATAAAA ATAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAA
887272 GAAAAATAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:899348 original size:31 final size:31
Alignment explanation
Indices: 899309--899394 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 31
899299 GTTTGGATCA
* *
899309 AGACTAAAATTTAAAAATTTAAAAAGTATAG
1 AGACTAAAATTGAAAAATTTAAAAAATATAG
* ** *
899340 GGACTAAAATTGACCAATTCAAAAAATATAG
1 AGACTAAAATTGAAAAATTTAAAAAATATAG
*
899371 AGATTAAAATTGATAAAA-TTAAAA
1 AGACTAAAATTGA-AAAATTTAAAA
899395 TTTAAGGGTT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
31 41 0.95
32 2 0.05
ACGTcount: A:0.57, C:0.06, G:0.10, T:0.27
Consensus pattern (31 bp):
AGACTAAAATTGAAAAATTTAAAAAATATAG
Found at i:908399 original size:46 final size:44
Alignment explanation
Indices: 908295--908402 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
908285 TGTCTTTGAC
** * * *
908295 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
908339 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
908385 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
908403 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:909348 original size:19 final size:18
Alignment explanation
Indices: 909315--909377 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
909305 TGTTTCTTTC
* *
909315 TCTGTTTCGTCTCTTCTAT
1 TCTGTTTCTTTTCTTCT-T
909334 TCTGTTTCTTTTCTTTCTT
1 TCTGTTTCTTTTC-TTCTT
* *
909353 TCTTTTTCTATTCTTTCTT
1 TCTGTTTCTTTTC-TTCTT
909372 T-TGTTT
1 TCTGTTT
909378 TATGTATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
18 4 0.11
19 30 0.79
20 4 0.11
ACGTcount: A:0.03, C:0.21, G:0.06, T:0.70
Consensus pattern (18 bp):
TCTGTTTCTTTTCTTCTT
Found at i:909366 original size:15 final size:15
Alignment explanation
Indices: 909328--909373 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
909318 GTTTCGTCTC
909328 TTCTATTCTGTT-TCTT
1 TTCTATTCT-TTCT-TT
909344 TTCT-TTCTTTCTTT
1 TTCTATTCTTTCTTT
909358 TTCTATTCTTTCTTT
1 TTCTATTCTTTCTTT
909373 T
1 T
909374 GTTTTATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 8 0.29
15 16 0.57
16 4 0.14
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (15 bp):
TTCTATTCTTTCTTT
Found at i:909378 original size:19 final size:19
Alignment explanation
Indices: 909328--909372 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
909318 GTTTCGTCTC
* *
909328 TTCTATTCTGTTTCTTTTCT
1 TTCT-TTCTTTTTCTATTCT
909348 TTCTTTCTTTTTCTATTCT
1 TTCTTTCTTTTTCTATTCT
909367 TTCTTT
1 TTCTTT
909373 TGTTTTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.73
Consensus pattern (19 bp):
TTCTTTCTTTTTCTATTCT
Found at i:909407 original size:19 final size:19
Alignment explanation
Indices: 909383--909425 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
909373 TGTTTTATGT
909383 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
909402 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
909421 ATATA
1 ATATA
909426 AAACATAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:909417 original size:24 final size:23
Alignment explanation
Indices: 909382--909453 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
909372 TTGTTTTATG
909382 TATAT-AT-ATAATATAATATAA
1 TATATAATCATAATATAATATAA
*
909403 TATATTAATGATAATATAATATAA
1 TATA-TAATCATAATATAATATAA
* * *
909427 AACATAATCATTACTATAATATAA
1 TATATAATCA-TAATATAATATAA
909451 TAT
1 TAT
909454 TTTTTTAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
21 4 0.10
22 1 0.02
23 7 0.17
24 29 0.71
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (23 bp):
TATATAATCATAATATAATATAA
Found at i:909453 original size:5 final size:5
Alignment explanation
Indices: 909382--909426 Score: 58
Period size: 5 Copynumber: 9.0 Consensus size: 5
909372 TTGTTTTATG
909382 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA
909427 AACATAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
3 1 0.03
4 4 0.11
5 23 0.64
6 8 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:914604 original size:46 final size:44
Alignment explanation
Indices: 914500--914607 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
914490 TGTCTTTGAC
** * * *
914500 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
914544 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
914590 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
914608 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:915563 original size:19 final size:20
Alignment explanation
Indices: 915541--915581 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
915531 TTCTATTCTG
*
915541 TTTCTTTTCTTTCTTTT-TT
1 TTTCTATTCTTTCTTTTGTT
915560 TTTCTATTCTTTCTTTTGTT
1 TTTCTATTCTTTCTTTTGTT
915580 TT
1 TT
915582 ATGTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTCTATTCTTTCTTTTGTT
Found at i:915569 original size:15 final size:15
Alignment explanation
Indices: 915531--915576 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
915521 GTTTCGTCTC
*
915531 TTCTATTCTGTTTCTT
1 TTCTATTCT-TTTTTT
915547 TTCT-TTCTTTTTTT
1 TTCTATTCTTTTTTT
915561 TTCTATTCTTTCTTTT
1 TTCTATTCTTT-TTTT
915577 GTTTTATGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 9 0.33
15 10 0.37
16 8 0.30
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.76
Consensus pattern (15 bp):
TTCTATTCTTTTTTT
Found at i:915598 original size:5 final size:5
Alignment explanation
Indices: 915585--915657 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
915575 TTGTTTTATG
915585 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
915633 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
915658 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:915610 original size:19 final size:19
Alignment explanation
Indices: 915586--915628 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
915576 TGTTTTATGT
915586 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
915605 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
915624 ATATA
1 ATATA
915629 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:915638 original size:24 final size:24
Alignment explanation
Indices: 915592--915656 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
915582 ATGTATATAT
* * *
915592 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
915616 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
915640 ATTACTATAATATAATA
1 A-TAATATAATATAATA
915657 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 19 0.56
25 12 0.35
26 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:919613 original size:22 final size:22
Alignment explanation
Indices: 919588--919634 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
919578 AAATTTTGTC
919588 TTCATTTAAGTGTATGACTTGA
1 TTCATTTAAGTGTATGACTTGA
919610 TTCATTTAAGTGTATGACTTGA
1 TTCATTTAAGTGTATGACTTGA
919632 TTC
1 TTC
919635 GACTTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.47
Consensus pattern (22 bp):
TTCATTTAAGTGTATGACTTGA
Found at i:920983 original size:98 final size:98
Alignment explanation
Indices: 920796--921002 Score: 353
Period size: 98 Copynumber: 2.1 Consensus size: 98
920786 TGTAAATTTA
*
920796 AATTATAAAA-TCGATTCAACTAGTTCACGAATCAATTAATTTTTACCTCTATTTGAGCTAATAT
1 AATTATAAAATTCGATTCAACTAGTTCACGAATCAACTAATTTTTACCTCTATTTGAGCTAATAT
920860 CCTGACTGGTTCCTAGTCCAACCGATCCAATCT
66 CCTGACTGGTTCCTAGTCCAACCGATCCAATCT
* * **
920893 AATTATAAAATTCGGTTCCACTAGTTCACGAATCAACTGGTTTTTACCTCTATTTGAGCTAATAT
1 AATTATAAAATTCGATTCAACTAGTTCACGAATCAACTAATTTTTACCTCTATTTGAGCTAATAT
920958 CCTGACTGGTTCCTAGTCCAACCGATCCAATCT
66 CCTGACTGGTTCCTAGTCCAACCGATCCAATCT
920991 AATTACTAAAAT
1 AATTA-TAAAAT
921003 ATTGATTGAA
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
97 10 0.10
98 87 0.84
99 6 0.06
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (98 bp):
AATTATAAAATTCGATTCAACTAGTTCACGAATCAACTAATTTTTACCTCTATTTGAGCTAATAT
CCTGACTGGTTCCTAGTCCAACCGATCCAATCT
Found at i:925541 original size:26 final size:26
Alignment explanation
Indices: 925505--925558 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
925495 CTATCTATCA
925505 AACTTGAAATCCCATTTAAAATTAGC
1 AACTTGAAATCCCATTTAAAATTAGC
925531 AACTTGAAATCCCATTTAAAATTAGC
1 AACTTGAAATCCCATTTAAAATTAGC
925557 AA
1 AA
925559 GAGTTTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (26 bp):
AACTTGAAATCCCATTTAAAATTAGC
Found at i:927825 original size:27 final size:27
Alignment explanation
Indices: 927794--927848 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
927784 TGTAATTGGG
927794 TAGGGTTATTGGAGTAAAAAAAAATGT
1 TAGGGTTATTGGAGTAAAAAAAAATGT
927821 TAGGGTTATTGGAGTAAAAAAAAATGT
1 TAGGGTTATTGGAGTAAAAAAAAATGT
927848 T
1 T
927849 TTCTTGATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (27 bp):
TAGGGTTATTGGAGTAAAAAAAAATGT
Found at i:928995 original size:45 final size:45
Alignment explanation
Indices: 928944--929033 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
928934 TATCATAGCC
*
928944 TTTCTCCTCAGTTTCCACAAACCTGTAAATATGTATGCAATTAAA
1 TTTCTCCTCAGTTTCCACAAACCCGTAAATATGTATGCAATTAAA
*
928989 TTTCTCCTCAGTTTCCACAAACCCGTAAATATGTATGTAATTAAA
1 TTTCTCCTCAGTTTCCACAAACCCGTAAATATGTATGCAATTAAA
929034 GGGATGAAGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (45 bp):
TTTCTCCTCAGTTTCCACAAACCCGTAAATATGTATGCAATTAAA
Found at i:944447 original size:62 final size:62
Alignment explanation
Indices: 944381--944564 Score: 307
Period size: 62 Copynumber: 3.0 Consensus size: 62
944371 CACGTATCTC
944381 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
944443 TTCATGT-ATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCAT-TCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * * *
944505 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
944565 TCGAGTTTAG
Statistics
Matches: 114, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
62 113 0.99
63 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (62 bp):
TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:945826 original size:11 final size:11
Alignment explanation
Indices: 945803--945855 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
945793 GGCCAAAAAA
945803 AAAAGAACAAAT
1 AAAA-AACAAAT
*
945815 AAAAACCAAAT
1 AAAAAACAAAT
945826 AAAAAACAAA-
1 AAAAAACAAAT
*
945836 AGCAAAAACAAAA
1 A--AAAAACAAAT
945849 AAAAAAC
1 AAAAAAC
945856 TCTACCAGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
10 1 0.03
11 21 0.58
12 13 0.36
13 1 0.03
ACGTcount: A:0.79, C:0.13, G:0.04, T:0.04
Consensus pattern (11 bp):
AAAAAACAAAT
Found at i:946779 original size:108 final size:103
Alignment explanation
Indices: 946643--946833 Score: 265
Period size: 103 Copynumber: 1.8 Consensus size: 103
946633 TTTGTATTCT
* *
946643 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAGTAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTG----TTTAGAGCTTTGCTCTCA-AAAAATTTCATCTT
*
946708 ATCCGTTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
61 ATCCATTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
** * *
946751 AGCAAAATTTGCTATCTTGATTTGTTTGTTTAGAGCTTTGCTCTCAAAAAATTTCATTTTGTCCA
1 AGCAAAATTTGCTATCTTGATTAATTTGTTTAGAGCTTTGCTCTCAAAAAATTTCATCTTATCCA
*
946816 TTTTGATAATCTTTTTCA
66 TTGTGATAATCTTTTTCA
946834 AGCATTTTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
103 31 0.41
104 18 0.24
108 26 0.35
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.48
Consensus pattern (103 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTTAGAGCTTTGCTCTCAAAAAATTTCATCTTATCCA
TTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
Found at i:947344 original size:44 final size:44
Alignment explanation
Indices: 947216--947711 Score: 470
Period size: 44 Copynumber: 11.3 Consensus size: 44
947206 ATAAGTCCTA
* *
947216 TCTTCCTATATTGGTAGGAAGTGGATCAAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
947259 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGAAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
947304 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTG
*
947348 TCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
947391 TCTTCCCATATTGGTGGCGAAGTAGATCGTAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
947436 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTG
*
947480 TCTTCCTATATTGGTAGGAAGTGGATCGAAGATA-CAGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
947523 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
947568 TCTTCATGTATTGG-CGTGAAGTAGATCGAATG-TAGCAAATCCTA
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAA-GATAGCAGATCTTG
* *
947612 TCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATATTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTG
* * *
947655 TCTTCCCATATTGGT-GGCAAAGTAGATTGAAGATTGCAGATCTTG
1 TCTTCCTATATTGGTAGG--AAGTAGATCGAAGATAGCAGATCTTG
* *
947700 CCTTCCTGTATT
1 TCTTCCTATATT
947712 TGGCAGCGAA
Statistics
Matches: 362, Mismatches: 77, Indels: 26
0.78 0.17 0.06
Matches are distributed among these distances:
42 2 0.01
43 81 0.22
44 196 0.54
45 83 0.23
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
TCTTCCTATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTG
Found at i:947448 original size:132 final size:132
Alignment explanation
Indices: 947211--947711 Score: 876
Period size: 132 Copynumber: 3.8 Consensus size: 132
947201 CGTAAATAAG
*
947211 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
947276 CGAAGTAGATCGCAGAAAGAAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
947341 GA
131 GA
947343 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
947408 CGAAGTAGATCGTAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
947473 GA
131 GA
*
947475 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
947540 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAATGTAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
*
947605 AA
131 GA
*
947607 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * * ** * *
947672 CAAAGTAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
947712 TGGCAGCGAA
Statistics
Matches: 353, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 353 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
GA
Found at i:947834 original size:135 final size:134
Alignment explanation
Indices: 947677--947957 Score: 517
Period size: 134 Copynumber: 2.1 Consensus size: 134
947667 GGTGGCAAAG
947677 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAAGATGGCAGA
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC-AAAGATGGCAGA
* * *
947742 TTTTACCTCCCTGACCACAGTGGAGTACACTGAAGTCGATAATTCTATCTCCCTGTATTTGGCAG
65 TTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAG
947807 TGGAA
130 TGGAA
947812 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
*
947877 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGT
947942 GGAA
131 GGAA
947946 TAGATTGAAGAT
1 TAGATTGAAGAT
947958 CAAAGATGGC
Statistics
Matches: 142, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
134 90 0.63
135 52 0.37
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGT
GGAA
Found at i:947967 original size:95 final size:95
Alignment explanation
Indices: 947859--948529 Score: 1270
Period size: 95 Copynumber: 7.0 Consensus size: 95
947849 GCAGCGAAGC
*
947859 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
947924 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
947954 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
948019 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
948049 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
948114 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
948144 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
948209 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
948239 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
948304 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
948334 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
948399 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
948429 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
948494 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGCATTTGGCAGTGGAATAGATTGA
948526 AGAT
1 AGAT
948530 TGCAGATCTT
Statistics
Matches: 567, Mismatches: 7, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
95 496 0.87
97 71 0.13
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:948651 original size:45 final size:45
Alignment explanation
Indices: 948600--948759 Score: 117
Period size: 45 Copynumber: 3.4 Consensus size: 45
948590 TCCCTGACCA
*
948600 CAGTGGAGTACACTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * * * *
948645 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGA-CT-A
1 CAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGT-ATTTGG
948697 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* *
948742 CAGTGGAATAGATTGAAG
1 CAGTGGAGTACATTGAAG
948760 ATTGCAGATA
Statistics
Matches: 83, Mismatches: 21, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.14
45 32 0.39
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 12 0.14
54 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:948679 original size:95 final size:97
Alignment explanation
Indices: 948565--948761 Score: 344
Period size: 97 Copynumber: 2.0 Consensus size: 97
948555 GCAGCGAAGC
948565 AGATCAAAAGATGGCAGATTTTACCTCC-CTGACCACAGTGGAGTACACTGAAGCCGATAACTCT
1 AGATCAAAAGATGGCAGATTTTACCTCCACTGACCACAGTGGAGTACACTGAAGCCGATAACTCT
948629 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
948661 AGATC-AAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTC
1 AGATCAAAAGATGGCAGATTTTACCTCCA-CTGACCACAGTGGAGTACACTGAAGCCGATAACTC
948725 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
65 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
948758 AGAT
1 AGAT
948762 TGCAGATATT
Statistics
Matches: 96, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
95 22 0.23
96 5 0.05
97 69 0.72
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (97 bp):
AGATCAAAAGATGGCAGATTTTACCTCCACTGACCACAGTGGAGTACACTGAAGCCGATAACTCT
ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:948790 original size:46 final size:46
Alignment explanation
Indices: 948731--949058 Score: 152
Period size: 46 Copynumber: 7.3 Consensus size: 46
948721 ACTCTATCTC
948731 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATATTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATATTGCCTT
* * ** * * * *
948777 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCTC
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATATTGCCTT
* * * * * *
948823 CCTG-A-CT-ACAGTGGAGTACATTG-A-A--GCCGATAATT-CTATCTC
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT-ATTGC---CTT
*
948865 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATATTGCCTT
* * * ** * * *
948911 CCTGTATTTGGCAGCGAAACAGATCAAAGA-TGACAGATTTTACCTC
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATATTGCCTT
* * * * * *
948957 CCTG-A-CT-ACAGTGGAGTACATTG-A-A--GCCGATAATT-CTATCT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT-ATTGC-CT-T
* * *
948998 CCTTGTATTTGGCAGTGGAATAGATTAAATATTGCAGATCTTGCCTT
1 CC-TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATATTGCCTT
949045 CCTGTATTTGGCAG
1 CCTGTATTTGGCAG
949059 CGAAGCAGAT
Statistics
Matches: 201, Mismatches: 54, Indels: 54
0.65 0.17 0.17
Matches are distributed among these distances:
39 11 0.05
40 6 0.03
41 4 0.02
42 11 0.05
43 16 0.08
44 6 0.03
45 32 0.16
46 93 0.46
47 5 0.02
48 5 0.02
49 12 0.06
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (46 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATATTGCCTT
Found at i:948851 original size:134 final size:134
Alignment explanation
Indices: 948661--949173 Score: 900
Period size: 134 Copynumber: 3.8 Consensus size: 134
948651 AATAGATTGA
*
948661 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
948726 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATATTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
948791 CGAAGC
129 CGAAGC
*
948797 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
948862 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
*
948927 AAAC
131 AAGC
* *
948931 AGATCAAAGATGACAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * *
948996 CTCCTTGTATTTGGCAGTGGAATAGATTAAATATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
949061 AAGC
131 AAGC
* *
949065 AGATCAAAGATAGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
949130 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
949174 ATCTCCCTAA
Statistics
Matches: 360, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
134 333 0.93
136 27 0.08
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:949206 original size:44 final size:44
Alignment explanation
Indices: 949144--949336 Score: 120
Period size: 44 Copynumber: 4.4 Consensus size: 44
949134 CTGTATTTGG
** * *
949144 CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAA
1 CAGTGGAGCAGATCGAAGATGACAGATCTTATCTCCCTAAGCAA
* * * * * * * **
949188 TAGTGGAGCAGGTCGAAGACGACGGATTTTACCTCCCTGA-TTA
1 CAGTGGAGCAGATCGAAGATGACAGATCTTATCTCCCTAAGCAA
* * * * ** * **
949231 CAGTGGAGTACATTGAAGCTGGTAGTTC-TATCTCCCTGGGCAA
1 CAGTGGAGCAGATCGAAGATGACAGATCTTATCTCCCTAAGCAA
** * *
949274 CAGTGGAATAGATCGAAGATTACAGATCTTATCTCTCTAAGCAA
1 CAGTGGAGCAGATCGAAGATGACAGATCTTATCTCCCTAAGCAA
* *
949318 TAGTGGAGCAGGTCGAAGA
1 CAGTGGAGCAGATCGAAGA
949337 CGGCGGATTT
Statistics
Matches: 103, Mismatches: 44, Indels: 4
0.68 0.29 0.03
Matches are distributed among these distances:
42 9 0.09
43 38 0.37
44 56 0.54
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
CAGTGGAGCAGATCGAAGATGACAGATCTTATCTCCCTAAGCAA
Found at i:949277 original size:43 final size:43
Alignment explanation
Indices: 949230--949421 Score: 111
Period size: 43 Copynumber: 4.4 Consensus size: 43
949220 CTCCCTGATT
* * *
949230 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCA
1 ACAGTGGAGTACATCGAAGCTGGCAGTTCTATCTCCCTGGACA
* * * ** * * *
949273 ACAGTGGAATAGATCGAAGATTACAGATCTTATCTCTCT-AAGCA
1 ACAGTGGAGTACATCGAAGCTGGCAGTTC-TATCTCCCTGGA-CA
* * ** * * * **
949317 ATAGTGGAGCAGGTCGAAGAC-GGCGGATTTTACCTCCCT-GATT
1 ACAGTGGAGTACATCGAAG-CTGGCAG-TTCTATCTCCCTGGACA
* *
949360 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACA
1 ACAGTGGAGTACATCGAAGCTGGCAGTTCTATCTCCCTGGACA
* *
949403 ACAGTGGAATAGATCGAAG
1 ACAGTGGAGTACATCGAAG
949422 AAAACAACAT
Statistics
Matches: 103, Mismatches: 40, Indels: 12
0.66 0.26 0.08
Matches are distributed among these distances:
42 11 0.11
43 56 0.54
44 35 0.34
45 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (43 bp):
ACAGTGGAGTACATCGAAGCTGGCAGTTCTATCTCCCTGGACA
Found at i:949325 original size:130 final size:130
Alignment explanation
Indices: 949080--949422 Score: 542
Period size: 130 Copynumber: 2.6 Consensus size: 130
949070 AAAGATAGCA
* * * * ** * ***
949080 GATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGC
1 GATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGA--CAAC
*
949145 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGA
64 AGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGA
949210 CG
129 CG
*
949212 GATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAG
1 GATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACAACAG
* *
949277 TGGAATAGATCGAAGATTACAGATCTTATCTCTCTAAGCAATAGTGGAGCAGGTCGAAGACGGCG
66 TGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGACG
949342 GATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACAACAG
1 GATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACAACAG
949407 TGGAATAGATCGAAGA
66 TGGAATAGATCGAAGA
949423 AAACAACATT
Statistics
Matches: 196, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
130 145 0.74
132 51 0.26
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (130 bp):
GATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACAACAG
TGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGACG
Found at i:953775 original size:26 final size:27
Alignment explanation
Indices: 953732--953782 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
953722 ATTGTAGTTA
*
953732 AATTTTAAAATATGAAAA-AGAAATTG
1 AATTTTAAAATATAAAAATAGAAATTG
953758 AATTTTCAAAA-ATAAAAATAGAAAT
1 AATTTT-AAAATATAAAAATAGAAAT
953783 AGAGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTTTAAAATATAAAAATAGAAATTG
Found at i:963960 original size:134 final size:134
Alignment explanation
Indices: 963720--963988 Score: 520
Period size: 134 Copynumber: 2.0 Consensus size: 134
963710 AAATGGTAGG
963720 CAAGTTGTTTAAAGTTGAATGGAATAATTGCAATTTTGGTCCCTAATTTTTTAGGCCATTTGCAA
1 CAAGTTGTTTAAAGTTGAATGGAATAATTGCAATTTTGGTCCCTAATTTTTTAGGCCATTTGCAA
963785 GTTAGTCCCTGAACCTCAACTATAAATAGGCCTAACCATTTCTCATTTACACTACCCCAACCAAT
66 GTTAGTCCCTGAACCTCAACTATAAATAGGCCTAACCATTTCTCATTTACACTACCCCAACCAAT
963850 CTTT
131 CTTT
*
963854 CAAGTTGTTTAAAGTTGAATGGGATAATTGCAATTTTGGTCCCTAATTTTTTAGGCCATTTGCAA
1 CAAGTTGTTTAAAGTTGAATGGAATAATTGCAATTTTGGTCCCTAATTTTTTAGGCCATTTGCAA
*
963919 GTTAGTCCCTGAACCTCAACTATAAATAGGCCTAACCATTTCTCATTTACACTATCCCAACCAAT
66 GTTAGTCCCTGAACCTCAACTATAAATAGGCCTAACCATTTCTCATTTACACTACCCCAACCAAT
963984 CTTT
131 CTTT
963988 C
1 C
963989 TCTCTTAGTT
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 133 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (134 bp):
CAAGTTGTTTAAAGTTGAATGGAATAATTGCAATTTTGGTCCCTAATTTTTTAGGCCATTTGCAA
GTTAGTCCCTGAACCTCAACTATAAATAGGCCTAACCATTTCTCATTTACACTACCCCAACCAAT
CTTT
Found at i:965498 original size:13 final size:13
Alignment explanation
Indices: 965466--965490 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
965456 TGTATAGAAT
965466 AATAAATAAATAA
1 AATAAATAAATAA
965479 AATAAATAAATA
1 AATAAATAAATA
965491 TACAAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAAATAAATAA
Found at i:965558 original size:3 final size:3
Alignment explanation
Indices: 965550--965577 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
965540 GCAAAGACGA
965550 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
965578 TAACATGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:965809 original size:3 final size:3
Alignment explanation
Indices: 965803--965897 Score: 104
Period size: 3 Copynumber: 32.0 Consensus size: 3
965793 CAGTAGCAGT
965803 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * * *
965851 ACC GTA GTA GTA ATA A-A AGT- ATA ATA GTA ATG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
965895 ATA
1 ATA
965898 TAAAAATATA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
2 3 0.04
3 76 0.96
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:965933 original size:36 final size:37
Alignment explanation
Indices: 965803--965943 Score: 94
Period size: 36 Copynumber: 3.8 Consensus size: 37
965793 CAGTAGCAGT
* * *
965803 ATAATAATAATAATAATAATAATAATA-A-TAATAATA
1 ATAATAATAATAATAAT-ATAAAAATATAGCAATAGTA
* *
965839 ATAATAATAATAACCGTAGTAGTAATAAA-AGTA-TAATAGTA
1 ATAATAATAATAA---TAATA-TAA-AAATA-TAGCAATAGTA
*
965880 ATGATAATAATAATAATATAAAAATATAGCAATAGTA
1 ATAATAATAATAATAATATAAAAATATAGCAATAGTA
* * **
965917 A-AATAATGATATTAATATGTAAATATA
1 ATAATAATAATAATAATATAAAAATATA
965944 AATAAAGATA
Statistics
Matches: 85, Mismatches: 11, Indels: 18
0.75 0.10 0.16
Matches are distributed among these distances:
36 39 0.46
37 12 0.14
38 5 0.06
39 7 0.08
40 2 0.02
41 20 0.24
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (37 bp):
ATAATAATAATAATAATATAAAAATATAGCAATAGTA
Found at i:966064 original size:3 final size:3
Alignment explanation
Indices: 966056--966095 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
966046 AGATGAAAAT
* *
966056 ATA ATA ATA GTA ATA AT- ACA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
966096 GGTGTTAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 1 0.03
3 31 0.97
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:966079 original size:20 final size:20
Alignment explanation
Indices: 966056--966093 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
966046 AGATGAAAAT
*
966056 ATAATAATAGTAATAATACA
1 ATAATAATAATAATAATACA
966076 ATAATAATAATAATAATA
1 ATAATAATAATAATAATA
966094 ATGGTGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
ATAATAATAATAATAATACA
Found at i:970339 original size:15 final size:14
Alignment explanation
Indices: 970321--970359 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
970311 AAAAATGAAT
970321 AAATTAAATTATATA
1 AAATTAAATTATA-A
*
970336 AAATTAAAATATAA
1 AAATTAAATTATAA
970350 AAATTAAATT
1 AAATTAAATT
970360 TAGTAAAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATTAAATTATAA
Found at i:970367 original size:15 final size:14
Alignment explanation
Indices: 970321--970367 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
970311 AAAAATGAAT
970321 AAATTAAATTATATA
1 AAATTAAATT-TATA
*
970336 AAATTAAA-ATATAA
1 AAATTAAATTTAT-A
970350 AAATTAAATTTAGTA
1 AAATTAAATTTA-TA
970365 AAA
1 AAA
970368 GGACAAAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 3 0.11
14 9 0.33
15 14 0.52
16 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
AAATTAAATTTATA
Found at i:978903 original size:14 final size:17
Alignment explanation
Indices: 978872--978908 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
978862 ATTATAAAGG
978872 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
978889 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
978903 ATATTA
1 ATATTA
978909 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:979084 original size:14 final size:14
Alignment explanation
Indices: 979058--979108 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
979048 GAAAACAAAA
979058 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
979072 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
979086 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
979101 G-AATAAAA
1 GAAATAAAA
979109 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:979119 original size:17 final size:16
Alignment explanation
Indices: 979097--979130 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
979087 AAGTTAAAAT
979097 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
979114 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
979130 A
1 A
979131 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:987326 original size:18 final size:19
Alignment explanation
Indices: 987297--987343 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
987287 GAACAATTTT
*
987297 TAAAAGTAAAAATTAAAAA
1 TAAAAGTAAAAATGAAAAA
987316 TAAAA-TAAAAATGAAAAA
1 TAAAAGTAAAAATGAAAAA
*
987334 -AAATGTAAAA
1 TAAAAGTAAAA
987344 GCTTTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 17 0.68
19 5 0.20
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (19 bp):
TAAAAGTAAAAATGAAAAA
Found at i:989905 original size:20 final size:21
Alignment explanation
Indices: 989859--989911 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
989849 TACTAATTAA
989859 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
989880 AAATATTTAA-AA-TATAGTTT
1 AAATATTTAATAATTATA-TTT
*
989900 ATATATTCTAAT
1 AAATATT-TAAT
989912 TAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:993668 original size:11 final size:12
Alignment explanation
Indices: 993652--993680 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
993642 ATTCTACAGT
993652 TTTTTTG-TTTG
1 TTTTTTGTTTTG
993663 TTTTTTGTTTTG
1 TTTTTTGTTTTG
993675 TTTTTT
1 TTTTTT
993681 AAGTGGCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (12 bp):
TTTTTTGTTTTG
Found at i:999999 original size:63 final size:63
Alignment explanation
Indices: 999895--1000028 Score: 252
Period size: 63 Copynumber: 2.1 Consensus size: 63
999885 TTCAGGTCAT
*
999895 GATTA-GTAGCTTTAGTCGATTCTTAGCTTCACAAATCTAATTGAATACATATATTGTTGCGG
1 GATTAGGTAGCTCTAGTCGATTCTTAGCTTCACAAATCTAATTGAATACATATATTGTTGCGG
999957 GATTAGGTAGCTCTAGTCGATTCTTAGCTTCACAAATCTAATTGAATACATATATTGTTGCGG
1 GATTAGGTAGCTCTAGTCGATTCTTAGCTTCACAAATCTAATTGAATACATATATTGTTGCGG
1000020 GATTAGGTA
1 GATTAGGTA
1000029 TTGTATGGAG
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 5 0.07
63 65 0.93
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.37
Consensus pattern (63 bp):
GATTAGGTAGCTCTAGTCGATTCTTAGCTTCACAAATCTAATTGAATACATATATTGTTGCGG
Found at i:1002237 original size:16 final size:15
Alignment explanation
Indices: 1002211--1002240 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1002201 AATTTGAAAA
1002211 TCAAAACCTCAAGAC
1 TCAAAACCTCAAGAC
1002226 TCAAAGACCTCAAGA
1 TCAAA-ACCTCAAGA
1002241 TATCAATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.30, G:0.10, T:0.13
Consensus pattern (15 bp):
TCAAAACCTCAAGAC
Found at i:1008868 original size:19 final size:20
Alignment explanation
Indices: 1008844--1008894 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
1008834 ATATATTTAA
1008844 AATTTAAATTTAAAAT-ATT
1 AATTTAAATTTAAAATAATT
*
1008863 AATTT-AATTTAATATAATT
1 AATTTAAATTTAAAATAATT
* *
1008882 AATATAATTTTAA
1 AATTTAAATTTAA
1008895 TTTTTTACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 9 0.33
19 12 0.44
20 6 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTTAAATTTAAAATAATT
Done.