Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 36 of 295
Found at i:10725594 original size:17 final size:18
Alignment explanation
Indices: 10725560--10725594 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10725550 GTTAGAGCCT
*
10725560 ATATGTTGTGTCTTTATG
1 ATATGTTCTGTCTTTATG
10725578 ATATGTTCTGT-TTTATG
1 ATATGTTCTGTCTTTATG
10725595 TCAACATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.17, C:0.06, G:0.20, T:0.57
Consensus pattern (18 bp):
ATATGTTCTGTCTTTATG
Found at i:10728661 original size:20 final size:19
Alignment explanation
Indices: 10728624--10728661 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10728614 AGGATCACAG
*
10728624 AAAAAAATAAATTTATAAA
1 AAAAAAATAAATTCATAAA
10728643 AAAAAAATAAATTGCATAA
1 AAAAAAATAAATT-CATAA
10728662 TTTATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (19 bp):
AAAAAAATAAATTCATAAA
Found at i:10740608 original size:17 final size:16
Alignment explanation
Indices: 10740570--10740602 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
10740560 TGTGATTTTA
10740570 TAAT-TTTTATATAAT
1 TAATATTTTATATAAT
10740585 TAATATTTTA-ATAAT
1 TAATATTTTATATAAT
10740600 TAA
1 TAA
10740603 ACTATTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATATTTTATATAAT
Found at i:10743775 original size:21 final size:21
Alignment explanation
Indices: 10743749--10743789 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10743739 ATCTGCTCAA
* *
10743749 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
10743770 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
10743790 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:10748753 original size:44 final size:44
Alignment explanation
Indices: 10748689--10748779 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
10748679 GTAGGTCAAA
* *
10748689 TAATATTAAAATAGCTTACACTAATCAGAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACATACACTAATCAGAGTTTAAGTGAGAAAC
* *
10748733 TAATATTAAAATAACATACACTAATCATAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACATACACTAATCAGAGTTTAAGTGAGAAAC
10748777 TAA
1 TAA
10748780 AAACAAAGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAACATACACTAATCAGAGTTTAAGTGAGAAAC
Found at i:10750486 original size:21 final size:21
Alignment explanation
Indices: 10750440--10750485 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
10750430 TTTTTTTGTG
*
10750440 AAAAACCCTCCCGAAAAGGGT
1 AAAAACCCTCCCGAAAAGGAT
*
10750461 GAAAACCC-CCCGAAAAGGAT
1 AAAAACCCTCCCGAAAAGGAT
10750481 AAAAA
1 AAAAA
10750486 ATCACGGGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.50, C:0.26, G:0.17, T:0.07
Consensus pattern (21 bp):
AAAAACCCTCCCGAAAAGGAT
Found at i:10753067 original size:2 final size:2
Alignment explanation
Indices: 10753062--10753096 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
10753052 ACTATCATAC
* *
10753062 AT AT AT AT AC AT AT AT AT AT AC AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10753097 CTTTATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:10753071 original size:10 final size:10
Alignment explanation
Indices: 10753058--10753092 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
10753048 TTACACTATC
10753058 ATACATATAT
1 ATACATATAT
10753068 ATACATATATAT
1 ATAC--ATATAT
10753080 ATACATATAT
1 ATACATATAT
10753090 ATA
1 ATA
10753093 TATACTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 13 0.57
12 10 0.43
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (10 bp):
ATACATATAT
Found at i:10753079 original size:12 final size:12
Alignment explanation
Indices: 10753062--10753094 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
10753052 ACTATCATAC
10753062 ATATATATACAT
1 ATATATATACAT
10753074 ATATATATACAT
1 ATATATATACAT
10753086 ATATATATA
1 ATATATATA
10753095 TACTTTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATACAT
Found at i:10754327 original size:131 final size:129
Alignment explanation
Indices: 10754093--10754421 Score: 441
Period size: 131 Copynumber: 2.6 Consensus size: 129
10754083 CTATTCATTC
* *
10754093 AAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTACCCTATCGTG
1 AAAAATTC-TTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTG
* * * * * *
10754158 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTGGAATTTTACTCATGTGTT
65 CTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT-TC
10754223 T
129 T
* *
10754224 AAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
1 AAAAATTCTT-AAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTG
*
10754289 CTGGGTTGCAATTTCCCATTTGTTCAAAATAGTCGAATATCCCTTTAGAATTTCACTCATGTTCT
65 CTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTCT
** * * * *
10754354 CTAAATTC-TAAAA--AAGGCAATGTTCGATGTCTAGAAATTCGAGGAATCATGCCCTA-CTGTG
1 AAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATC-GTG
10754415 CTGGGTT
65 CTGGGTT
10754422 TCGATTTTTT
Statistics
Matches: 177, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
125 1 0.01
126 47 0.27
128 4 0.02
129 1 0.01
130 10 0.06
131 114 0.64
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (129 bp):
AAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGC
TGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTCT
Found at i:10758363 original size:24 final size:23
Alignment explanation
Indices: 10758284--10758363 Score: 58
Period size: 24 Copynumber: 3.3 Consensus size: 23
10758274 TATTTTTAAA
10758284 ATACATA-C-TTATATACTTTAT
1 ATACATACCTTTATATACTTTAT
* *
10758305 AT-CTTACTTATTTATATACCCTTGTAT
1 ATACATAC--CTTTATATA--CTT-TAT
*
10758332 ATATATACCTTTATATACTTTAT
1 ATACATACCTTTATATACTTTAT
10758355 AATACATAC
1 -ATACATAC
10758364 ATGCACATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
20 3 0.07
21 2 0.05
23 3 0.07
24 17 0.39
26 11 0.25
27 5 0.11
28 3 0.07
ACGTcount: A:0.35, C:0.16, G:0.01, T:0.47
Consensus pattern (23 bp):
ATACATACCTTTATATACTTTAT
Found at i:10758586 original size:17 final size:17
Alignment explanation
Indices: 10758564--10758599 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
10758554 TATATTCGAA
10758564 TTCATTT-AGTTATTTAT
1 TTCATTTCA-TTATTTAT
10758581 TTCATTTCATTATTTAT
1 TTCATTTCATTATTTAT
10758598 TT
1 TT
10758600 TGAATGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.22, C:0.08, G:0.03, T:0.67
Consensus pattern (17 bp):
TTCATTTCATTATTTAT
Found at i:10770771 original size:44 final size:43
Alignment explanation
Indices: 10770661--10771066 Score: 203
Period size: 44 Copynumber: 9.5 Consensus size: 43
10770651 ATTATACAGG
* *** * *
10770661 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
*
10770707 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* ** *
10770751 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAG--A
* * * *
10770795 TCCTATCTCCTTGAGATTACAATGGAGCGGATT-AA--AG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAGA
* * * * *
10770834 TCTTATCTCTCTGA-AGTTACAGTAGAG-A-AATCACATCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGCAGAGA
* * * ** * * *
10770874 TC-TATTTCCCTGAGGTTACAGTGGAGTAGACCGGAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
* *
10770919 TCTTA-CTCCCTGAGGTTACAGTGGAGCAGATTGAACCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAGA
* * **
10770961 TCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAAGACA-CTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* * * * ** *
10771003 TCCTATCTCCCTGA-AGTACAGTGGAGCGGATTAAAATAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGA-GA
* *
10771046 TCTTATCTCTCTGAGGTTACA
1 TCTTATCTCCCTGAGATTACA
10771067 ACAGAGTAGA
Statistics
Matches: 273, Mismatches: 64, Indels: 48
0.71 0.17 0.12
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 41 0.15
40 5 0.02
41 7 0.03
42 58 0.21
43 26 0.10
44 69 0.25
45 28 0.10
46 34 0.12
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAGA
Found at i:10770981 original size:42 final size:42
Alignment explanation
Indices: 10770704--10771060 Score: 155
Period size: 42 Copynumber: 8.4 Consensus size: 42
10770694 AAAGAATTTC
* *
10770704 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGA-GATACAGTGGAGCAGATTGAA-ACAG
* * * *
10770748 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TCAAAGAT
1 AGATCTTATCTCCCTGAGA-TACAGTGGAGCAGATTGAAACAG
* * * *
10770790 AGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATT--AA-AG
1 AG--ATCTTATCTCCCTGAGA-TACAGTGGAGCAGATTGAAACAG
* * * * * *
10770832 -GATCTTATCTCTCTGAAGTTACAGTAGAG-A-AATCACATCAG
1 AGATCTTATCTCCCTG-AGATACAGTGGAGCAGATTGA-AACAG
* * * ** ***
10770873 -G-TC-TATTTCCCTGAGGTTACAGTGGAGTAGACCGGAGAATTTC
1 AGATCTTATCTCCCTGA-GATACAGTGGAGCAGA-TTGA-AA-CAG
* *
10770916 AGATCTTA-CTCCCTGAGGTTACAGTGGAGCAGATTGAACCAG
1 AGATCTTATCTCCCTGA-GATACAGTGGAGCAGATTGAAACAG
* *
10770958 AGATCTTATCTCCCTGAGATACAGCGGAGCAGATCGAAGACA-
1 AGATCTTATCTCCCTGAGATACAGTGGAGCAGATTGAA-ACAG
** * * * * *
10771000 CTATCCTATCTCCCTGA-AGTACAGTGGAGCGGATTAAAATAA
1 AGATCTTATCTCCCTGAGA-TACAGTGGAGCAGATTGAAACAG
*
10771042 AGGATCTTATCTCTCTGAG
1 A-GATCTTATCTCCCTGAG
10771061 GTTACAACAG
Statistics
Matches: 234, Mismatches: 56, Indels: 46
0.70 0.17 0.14
Matches are distributed among these distances:
37 2 0.01
38 1 0.00
39 38 0.16
40 6 0.03
41 8 0.03
42 61 0.26
43 30 0.13
44 60 0.26
45 26 0.11
46 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (42 bp):
AGATCTTATCTCCCTGAGATACAGTGGAGCAGATTGAAACAG
Found at i:10771045 original size:212 final size:213
Alignment explanation
Indices: 10770657--10771066 Score: 616
Period size: 212 Copynumber: 1.9 Consensus size: 213
10770647 GTTTATTATA
10770657 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
10770722 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAA
66 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAA
* * * *
10770787 GATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTT
131 GACACTAATCCTATCTCCCTGAGAGTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTT
10770852 ACAGTAGAGAAATCACAT
196 ACAGTAGAGAAATCACAT
* * ** **
10770870 CAGGTC-TATTTCCCTGAGGTTACAGTGGAGTAGACCGGAGAATTTCAGATCTTA-CTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
*
10770933 GTTACAGTGGAGCAGATTGAA-CCAGAGATCTTATCTCCCTGAGA-TACAGCGGAGCAGATCGAA
66 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAA
*
10770996 GACACT-ATCCTATCTCCCTGA-AGTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTG
131 GACACTAATCCTATCTCCCTGAGAGTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTG
*
10771059 AGGTTACA
191 AAGTTACA
10771067 ACAGAGTAGA
Statistics
Matches: 179, Mismatches: 13, Indels: 11
0.88 0.06 0.05
Matches are distributed among these distances:
207 14 0.08
208 15 0.08
209 22 0.12
210 23 0.13
211 30 0.17
212 69 0.39
213 6 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (213 bp):
CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAA
GACACTAATCCTATCTCCCTGAGAGTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTT
ACAGTAGAGAAATCACAT
Found at i:10787451 original size:70 final size:70
Alignment explanation
Indices: 10787327--10787457 Score: 181
Period size: 70 Copynumber: 1.9 Consensus size: 70
10787317 TTTCTGTTTC
* ****
10787327 AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCAAGGTATTTTTAAATT
10787392 TTAAA
66 TTAAA
* ** *
10787397 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACCAAGGTATTTTTA
1 AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCAAGGTATTTTTA
10787458 GTTTATGATT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
70 52 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (70 bp):
AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACCAAGGTATTTTTAAATT
TTAAA
Found at i:10787712 original size:72 final size:72
Alignment explanation
Indices: 10787507--10788817 Score: 2196
Period size: 72 Copynumber: 18.1 Consensus size: 72
10787497 TAAGCCTTTT
* * ** * *
10787507 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
10787571 GTAATTTT
65 GTAATTTC
* * * *
10787579 AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
10787644 AGGTAATTTC
63 AGGTAATTTC
* * * *
10787654 AATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10787719 TATTTTC
66 TAATTTC
10787726 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
10787791 GTAATTTC
65 GTAATTTC
* *
10787799 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10787864 TAATTTC
66 TAATTTC
* * * *
10787871 AATCTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10787936 TATTTTC
66 TAATTTC
10787943 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
10788008 GTAATTTC
65 GTAATTTC
10788016 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10788081 TAATTTC
66 TAATTTC
10788088 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10788153 T-ATTTC
66 TAATTTC
*
10788159 AATTTCTGCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10788224 TAATTTC
66 TAATTTC
10788231 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10788296 TATTTTC
66 TAATTTC
10788303 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10788368 TAATTTC
66 TAATTTC
10788375 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10788440 TATTTTC
66 TAATTTC
*
10788447 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
10788512 GTAATTTC
65 GTAATTTC
10788520 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10788585 TATTTTC
66 TAATTTC
*
10788592 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
10788657 GTAATTTC
65 GTAATTTC
*
10788665 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10788730 TATTTTC
66 TAATTTC
* * *
10788737 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGA
1 AATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
10788801 GGTATTTTC
64 GGTAATTTC
10788810 AATTTCTG
1 AATTTCTG
10788818 CTTTACTAAT
Statistics
Matches: 1184, Mismatches: 44, Indels: 21
0.95 0.04 0.02
Matches are distributed among these distances:
71 72 0.06
72 704 0.59
73 341 0.29
74 8 0.01
75 59 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:10787903 original size:217 final size:217
Alignment explanation
Indices: 10787503--10788821 Score: 2254
Period size: 217 Copynumber: 6.1 Consensus size: 217
10787493 GAGTTAAGCC
* * * ** *
10787503 TTTT-AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * * *
10787566 CTGAGGTAATTTTAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
66 TTGAGGTAATTTCAATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
* * * *
10787631 TCAGGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAG
128 TCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAG
*
10787696 TTGAGCCTCAGGACACGCTGAGGTA
193 TTGAGCCTCAAGACACGCTGAGGTA
10787721 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
10787786 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * * *
10787851 GGACACGCTGAGGTAATTTCAATCTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
*
10787916 AGCCTCAGGACACGCTGAGGTA
196 AGCCTCAAGACACGCTGAGGTA
10787938 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
10788003 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
10788068 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
*
10788133 AGCCTCAAGACACGTTGAGGTA
196 AGCCTCAAGACACGCTGAGGTA
10788155 -TTTCAATTTCTGC-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
10788218 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
10788283 AGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
*
10788348 AGCCTCAAGACACGTTGAGGTA
196 AGCCTCAAGACACGCTGAGGTA
*
10788370 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
10788434 TTGAGGTATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 TTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
10788499 AAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
130 AAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
*
10788564 GAGCCTCAAGACACGTTGAGGTA
195 GAGCCTCAAGACACGCTGAGGTA
*
10788587 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
10788652 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * *
10788717 AGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGT
131 AGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGT
*
10788781 TGAGCCTCAAGGCACGCTGAGGTA
194 TGAGCCTCAAGACACGCTGAGGTA
10788805 TTTTCAATTTCTGCTTT
1 TTTTCAATTTCTGCTTT
10788822 ACTAATTCTA
Statistics
Matches: 1061, Mismatches: 32, Indels: 16
0.96 0.03 0.01
Matches are distributed among these distances:
215 201 0.19
216 95 0.09
217 544 0.51
218 143 0.13
219 20 0.02
220 58 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (217 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAAGACACGCTGAGGTA
Found at i:10788829 original size:145 final size:145
Alignment explanation
Indices: 10787507--10788817 Score: 2226
Period size: 145 Copynumber: 9.1 Consensus size: 145
10787497 TAAGCCTTTT
* * ** * *
10787507 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* *
10787571 GTAATTTT-AATTTCTG-TTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
65 GT-ATTTTCAATTTCTGCTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* *
10787634 GGACACGCTGAGGTAATTTC
126 AGACACGTTGAGGTAATTTC
* * * *
10787654 AATTTCTATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10787719 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
10787784 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
* *
10787799 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * * *
10787864 TAATTTCAATCTCTG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
10787928 CGCTGAGGTATTTTC
131 CGTTGAGGTAATTTC
10787943 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
10788008 GTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
65 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
10788072 ACGTTGAGGTAATTTC
130 ACGTTGAGGTAATTTC
10788088 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10788153 TA-TTTCAATTTCTGC-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
10788216 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
10788231 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
10788296 TATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
10788360 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
10788375 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10788440 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
10788505 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
10788520 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
10788585 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
10788650 CGTTGAGGTAATTTC
131 CGTTGAGGTAATTTC
*
10788665 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
10788730 TATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGC
66 TATTTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
10788794 ACGCTGAGGTATTTTC
130 ACGTTGAGGTAATTTC
10788810 AATTTCTG
1 AATTTCTG
10788818 CTTTACTAAT
Statistics
Matches: 1123, Mismatches: 32, Indels: 20
0.96 0.03 0.02
Matches are distributed among these distances:
143 142 0.13
144 282 0.25
145 621 0.55
146 16 0.01
147 60 0.05
148 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (145 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGTTGAGGTAATTTC
Found at i:10788923 original size:14 final size:14
Alignment explanation
Indices: 10788901--10788933 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10788891 TCTTTTCAAA
10788901 TTCTG-TTTTTAAT
1 TTCTGTTTTTTAAT
10788914 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
10788928 TTCTGT
1 TTCTGT
10788934 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.70
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:10788923 original size:86 final size:87
Alignment explanation
Indices: 10788732--10788923 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
10788722 CATTGAGGTA
* * * *
10788732 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
10788797 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
10788819 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
10788880 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
10788906 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
10788924 TAATTTCTGT
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:10789184 original size:55 final size:52
Alignment explanation
Indices: 10788945--10789193 Score: 344
Period size: 50 Copynumber: 4.7 Consensus size: 52
10788935 TTTCAAAAAA
* *
10788945 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTTAATTTTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCTG-TTTTC
*
10788998 AAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA-TTCT-GTTTTC
* *
10789051 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTT--TTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCT-GTTTTC
*
10789101 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCTGCTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT---AATTCTGTTTTC
*
10789156 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
10789194 GGCTCACGTG
Statistics
Matches: 179, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
50 46 0.26
51 3 0.02
52 31 0.17
53 28 0.16
54 26 0.15
55 41 0.23
56 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (52 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCTGTTTTC
Found at i:10789454 original size:14 final size:15
Alignment explanation
Indices: 10789435--10789469 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
10789425 TTTAATTTTC
10789435 AAAATTTCAAAAA-A
1 AAAATTTCAAAAATA
*
10789449 AAAATTTTAAAAATA
1 AAAATTTCAAAAATA
10789464 AAAATT
1 AAAATT
10789470 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATTTCAAAAATA
Found at i:10789528 original size:30 final size:29
Alignment explanation
Indices: 10789465--10789581 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 29
10789455 TTAAAAATAA
* *
10789465 AAATTGCATTTTGACACCTAAACTTT-TCCT
1 AAATTTCATTTTGAC-CCTAAACTTTCT-TT
10789495 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCTTT
** *
10789525 AAATTTCATTTAAACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCTTT
* * *
10789555 AAATTTCATTTTAATCCTAAATTTTCT
1 AAATTTCATTTTGACCCTAAACTTTCT
10789582 AAAAATTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
29 12 0.16
30 59 0.79
31 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.45
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:10789587 original size:29 final size:29
Alignment explanation
Indices: 10789462--10789594 Score: 101
Period size: 30 Copynumber: 4.5 Consensus size: 29
10789452 ATTTTAAAAA
* *
10789462 TAAAAATTGCATTTTGACACCTAAACTTTTCC
1 TAAAAATTTCATTTTAAC-CCTAAAC-TTT-C
*
10789494 T--AAATTTCATTTTGACCCTTAAACTTTC
1 TAAAAATTTCATTTTAACCC-TAAACTTTC
** *
10789522 TTTAAATTTCATTTAAACCCCTAAACTTTC
1 TAAAAATTTCATTTTAA-CCCTAAACTTTC
* * *
10789552 -ATTAAATTTCATTTTAATCCTAAATTTTC
1 TA-AAAATTTCATTTTAACCCTAAACTTTC
*
10789581 TAAAAATTACATTT
1 TAAAAATTTCATTT
10789595 AGCCCCAGAA
Statistics
Matches: 86, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
28 2 0.02
29 25 0.29
30 55 0.64
31 3 0.03
32 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (29 bp):
TAAAAATTTCATTTTAACCCTAAACTTTC
Found at i:10789829 original size:20 final size:20
Alignment explanation
Indices: 10789806--10789863 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
10789796 AAAACTTGCA
10789806 AAAAAGAGAAAAAGAAGAGG
1 AAAAAGAGAAAAAGAAGAGG
* *
10789826 AAAAGGAGAGAAAG-AGAGG
1 AAAAAGAGAAAAAGAAGAGG
* *
10789845 AGAAAG-G-AGAAGAAGAGG
1 AAAAAGAGAAAAAGAAGAGG
10789863 A
1 A
10789864 GAGCCTCCGA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 3 0.10
18 7 0.23
19 9 0.29
20 12 0.39
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (20 bp):
AAAAAGAGAAAAAGAAGAGG
Found at i:10789835 original size:22 final size:20
Alignment explanation
Indices: 10789811--10789854 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
10789801 TTGCAAAAAA
*
10789811 GAGAAAAAGAAGAGGA-AAAG
1 GAGAGAAAG-AGAGGAGAAAG
10789831 GAGAGAAAGAGAGGAGAAAG
1 GAGAGAAAGAGAGGAGAAAG
10789851 GAGA
1 GAGA
10789855 AGAAGAGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (20 bp):
GAGAGAAAGAGAGGAGAAAG
Found at i:10789905 original size:18 final size:17
Alignment explanation
Indices: 10789882--10789924 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
10789872 GACAGCGGCT
10789882 CGACGGCGAAGACGACGG
1 CGACGGCGAAG-CGACGG
*
10789900 CGACGGCACAAGCGACGG
1 CGACGGC-GAAGCGACGG
10789918 CG-CGGCG
1 CGACGGCG
10789925 CGGCGGCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.18
18 15 0.68
19 3 0.14
ACGTcount: A:0.23, C:0.33, G:0.44, T:0.00
Consensus pattern (17 bp):
CGACGGCGAAGCGACGG
Found at i:10789948 original size:3 final size:3
Alignment explanation
Indices: 10789942--10790003 Score: 81
Period size: 3 Copynumber: 21.0 Consensus size: 3
10789932 TAGGGCTCGT
* * *
10789942 GAA GAA GAA GAA GAA GAA GAA GAA GAA GGA GAA GAA GAA AAA GAA AAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
10789990 GAA AAA GAA -AA GAA
1 GAA GAA GAA GAA GAA
10790004 AAATAAAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:10790006 original size:6 final size:6
Alignment explanation
Indices: 10789946--10790018 Score: 67
Period size: 6 Copynumber: 12.3 Consensus size: 6
10789936 GCTCGTGAAG
* * * * * *
10789946 AAGAAG AAGAAG AAGAAG AAGAAG GAGAAG AAGAAA AAGAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
* *
10789994 AAG-AA AAGAAA AATAAA AATAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AA
10790019 ATATATAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
5 5 0.08
6 57 0.92
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (6 bp):
AAGAAA
Found at i:10790078 original size:18 final size:18
Alignment explanation
Indices: 10790055--10790097 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
10790045 CGGGTCAAAC
10790055 CGACCCGATCCGGCGACA
1 CGACCCGATCCGGCGACA
* *
10790073 CGACCCGATCCGGTGACC
1 CGACCCGATCCGGCGACA
10790091 CGACCCG
1 CGACCCG
10790098 CAACCCAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.19, C:0.47, G:0.28, T:0.07
Consensus pattern (18 bp):
CGACCCGATCCGGCGACA
Found at i:10790386 original size:7 final size:7
Alignment explanation
Indices: 10790376--10790454 Score: 69
Period size: 7 Copynumber: 12.0 Consensus size: 7
10790366 AAAAGAAGGA
10790376 AAAAAAG
1 AAAAAAG
*
10790383 AAAACAG
1 AAAAAAG
*
10790390 AAAACAG
1 AAAAAAG
10790397 -AAAAAG
1 AAAAAAG
10790403 AAAAAAG
1 AAAAAAG
10790410 --AAAAG
1 AAAAAAG
*
10790415 AGAAAA-
1 AAAAAAG
*
10790421 AAAAAGG
1 AAAAAAG
*
10790428 GAAAAAG
1 AAAAAAG
*
10790435 -GAAAAG
1 AAAAAAG
10790441 AAAAAAG
1 AAAAAAG
10790448 AAAAAAG
1 AAAAAAG
10790455 GAAGGCTCGA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
5 5 0.08
6 14 0.24
7 40 0.68
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:10790393 original size:12 final size:11
Alignment explanation
Indices: 10790377--10790451 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 11
10790367 AAAGAAGGAA
10790377 AAAAAGAAAACAG
1 AAAAAG-AAA-AG
10790390 AAAACAGAAAAAG
1 AAAA-AG-AAAAG
10790403 AAAAAAGAAAAG
1 -AAAAAGAAAAG
*
10790415 AGAAAAAAAAAGGG
1 A-AAAAGAAAA--G
10790429 AAAAAGGAAAAG
1 AAAAA-GAAAAG
10790441 AAAAAAGAAAA
1 -AAAAAGAAAA
10790452 AAGGAAGGCT
Statistics
Matches: 53, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
11 1 0.02
12 19 0.36
13 17 0.32
14 16 0.30
ACGTcount: A:0.79, C:0.03, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:10790393 original size:13 final size:12
Alignment explanation
Indices: 10790364--10790452 Score: 74
Period size: 13 Copynumber: 7.0 Consensus size: 12
10790354 CAGGCCAAAG
*
10790364 GAAAAAGAAGGAA
1 GAAAAAGAA-AAA
10790377 -AAAAAGAAAACA
1 GAAAAAGAAAA-A
10790389 GAAAACAGAAAAA
1 GAAAA-AGAAAAA
10790402 GAAAAAAGAAAAGA
1 G-AAAAAGAAAA-A
*
10790416 GAAAAA-AAAAGG
1 GAAAAAGAAAA-A
*
10790428 GAAAAAGGAAAA
1 GAAAAAGAAAAA
10790440 GAAAAAAGAAAAA
1 G-AAAAAGAAAAA
10790453 AGGAAGGCTC
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
11 1 0.02
12 21 0.33
13 30 0.47
14 12 0.19
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (12 bp):
GAAAAAGAAAAA
Found at i:10790408 original size:39 final size:37
Alignment explanation
Indices: 10790365--10790450 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 37
10790355 AGGCCAAAGG
*
10790365 AAAAAGAAGGAAAAAAAGAAAACAGAAAACAGAAAAAGA
1 AAAAAGAAAGAAAAAAA-AAAACAGAAAA-AGAAAAAGA
* ** *
10790404 AAAAAGAAAAGAGAAAAAAAAAGGGAAAAAGGAAAAGA
1 AAAAAG-AAAGAAAAAAAAAAACAGAAAAAGAAAAAGA
10790442 AAAAAGAAA
1 AAAAAGAAA
10790451 AAAGGAAGGC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
37 3 0.07
38 14 0.34
39 15 0.37
40 9 0.22
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (37 bp):
AAAAAGAAAGAAAAAAAAAAACAGAAAAAGAAAAAGA
Found at i:10790414 original size:32 final size:30
Alignment explanation
Indices: 10790364--10790453 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 30
10790354 CAGGCCAAAG
* *
10790364 GAAAAAGAAGGAAAAAAAGAAAACAGAAAACA
1 GAAAAAGAA-AAAAAAAAGAAAA-AAAAAACA
**
10790396 GAAAAAGAAAAAAGAAAAGAGAAAAAAAAAGG
1 GAAAAAGAAAAAA-AAAAGA-AAAAAAAAACA
10790428 GAAAAAGGAAAAGAAAAAAGAAAAAA
1 GAAAAA-GAAAA-AAAAAAGAAAAAA
10790454 GGAAGGCTCG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
31 3 0.06
32 31 0.62
33 14 0.28
34 2 0.04
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (30 bp):
GAAAAAGAAAAAAAAAAGAAAAAAAAAACA
Found at i:10790453 original size:20 final size:20
Alignment explanation
Indices: 10790378--10790457 Score: 92
Period size: 20 Copynumber: 4.1 Consensus size: 20
10790368 AAGAAGGAAA
* * *
10790378 AAAAGAAAACAGAAAACAGA
1 AAAAGAAAAAAGAAAAAAGG
*
10790398 AAAAGAAAAAAGAAAAGA-G
1 AAAAGAAAAAAGAAAAAAGG
* *
10790417 AAAA-AAAAAGGGAAAAAGG
1 AAAAGAAAAAAGAAAAAAGG
10790436 AAAAGAAAAAAGAAAAAAGG
1 AAAAGAAAAAAGAAAAAAGG
10790456 AA
1 AA
10790458 GGCTCGAGTC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
18 10 0.20
19 9 0.18
20 31 0.62
ACGTcount: A:0.78, C:0.03, G:0.20, T:0.00
Consensus pattern (20 bp):
AAAAGAAAAAAGAAAAAAGG
Found at i:10790454 original size:14 final size:13
Alignment explanation
Indices: 10790376--10790452 Score: 86
Period size: 13 Copynumber: 5.9 Consensus size: 13
10790366 AAAAGAAGGA
10790376 AAAAAAGAAAACAG
1 AAAAAAGAAAA-AG
*
10790390 AAAACAGAAAAAG
1 AAAAAAGAAAAAG
10790403 AAAAAAG-AAAAG
1 AAAAAAGAAAAAG
*
10790415 AGAAAAA-AAAAGG
1 A-AAAAAGAAAAAG
* *
10790428 GAAAAAGGAAAAG
1 AAAAAAGAAAAAG
10790441 AAAAAAGAAAAA
1 AAAAAAGAAAAA
10790453 AGGAAGGCTC
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
12 11 0.21
13 31 0.60
14 10 0.19
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:10790503 original size:21 final size:21
Alignment explanation
Indices: 10790479--10790518 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
10790469 TGTAACCCTC
10790479 TCGGTCAAGCTCGTATTTTGA
1 TCGGTCAAGCTCGTATTTTGA
*
10790500 TCGGTCAATCTCGTATTTT
1 TCGGTCAAGCTCGTATTTT
10790519 TGAGCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.42
Consensus pattern (21 bp):
TCGGTCAAGCTCGTATTTTGA
Found at i:10790980 original size:39 final size:38
Alignment explanation
Indices: 10790923--10791025 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 38
10790913 ACGATACTTC
*
10790923 TTAAAAAAA--TCGTGTTTCAAAAATTTTCG-GGTTTT
1 TTAAAAAAATTTCGTGTTTCAAAAATTTCCGTGGTTTT
*
10790958 TTAAAAAAATTTCTCGTGTTTCAAAAATTTCCGTGTTTTT
1 TTAAAAAAA-TT-TCGTGTTTCAAAAATTTCCGTGGTTTT
*
10790998 TTTAAAAAATTTCGTGTTTTCAAAAATT
1 TTAAAAAAATTTCGTG-TTTCAAAAATT
10791026 CTCACGTTTC
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
35 9 0.15
38 5 0.08
39 32 0.54
40 13 0.22
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.46
Consensus pattern (38 bp):
TTAAAAAAATTTCGTGTTTCAAAAATTTCCGTGGTTTT
Found at i:10790985 original size:18 final size:18
Alignment explanation
Indices: 10790962--10791250 Score: 83
Period size: 18 Copynumber: 16.1 Consensus size: 18
10790952 GGTTTTTTAA
10790962 AAAAATTTCTCGTGTTTC
1 AAAAATTTCTCGTGTTTC
*
10790980 AAAAATTTC-CGTGTTTTTTTT
1 AAAAATTTCTCGTG----TTTC
*
10791001 AAAAAATT-TCGTGTTTTC
1 AAAAATTTCTCGTG-TTTC
**
10791019 AAAAA-TTCTCACGTTTC
1 AAAAATTTCTCGTGTTTC
*
10791036 AAAAATCT-TCGTGTTTTC
1 AAAAATTTCTCGTG-TTTC
10791054 -AAAA-TTC-CAGTGTTTC
1 AAAAATTTCTC-GTGTTTC
* *
10791070 AAAAATTT-TCATGTTTT
1 AAAAATTTCTCGTGTTTC
***
10791087 AAAAA-AAGT-GT-TTTC
1 AAAAATTTCTCGTGTTTC
* * *
10791102 AAAAA-TTCCCGTATTTT
1 AAAAATTTCTCGTGTTTC
* *
10791119 GAAAATTT-TCTTGTTTTC
1 AAAAATTTCTCGTG-TTTC
10791137 AAAAAAAAATTTCT-GTGTTTTAC
1 ----AAAAATTTCTCGTG-TTT-C
* *
10791160 AAAAAATTCTCGTCTTTC
1 AAAAATTTCTCGTGTTTC
*
10791178 AAAAATTT-TCATGTTTTC
1 AAAAATTTCTCGTG-TTTC
*
10791196 AAAAAATTGAC-CGTG-TTC
1 -AAAAATT-TCTCGTGTTTC
* *
10791214 ATAAATTT-TCGTGTTTTA
1 AAAAATTTCTCGTG-TTTC
* *
10791232 AAAAAATCCTCGTGTTTC
1 AAAAATTTCTCGTGTTTC
10791250 A
1 A
10791251 TTTTTTATCA
Statistics
Matches: 197, Mismatches: 41, Indels: 66
0.65 0.13 0.22
Matches are distributed among these distances:
15 8 0.04
16 13 0.07
17 58 0.29
18 60 0.30
19 24 0.12
20 5 0.03
21 14 0.07
22 13 0.07
23 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (18 bp):
AAAAATTTCTCGTGTTTC
Found at i:10790992 original size:17 final size:17
Alignment explanation
Indices: 10790962--10791091 Score: 74
Period size: 17 Copynumber: 7.3 Consensus size: 17
10790952 GGTTTTTTAA
10790962 AAAAATTTCTCGTGTTTC
1 AAAAATTTC-CGTGTTTC
*
10790980 AAAAATTTCCGTGTTTTTTTTA
1 AAAAATTTCCGTG-----TTTC
10791002 AAAAATTT-CGTGTTTTC
1 AAAAATTTCCGTG-TTTC
10791019 AAAAATTCTCAC--GTTTC
1 AAAAATT-TC-CGTGTTTC
10791036 AAAAATCTT-CGTGTTTTC
1 AAAAAT-TTCCGTG-TTTC
10791054 -AAAA-TTCCAGTGTTTC
1 AAAAATTTCC-GTGTTTC
* * *
10791070 AAAAATTTTCATGTTTT
1 AAAAATTTCCGTGTTTC
10791087 AAAAA
1 AAAAA
10791092 AAGTGTTTTC
Statistics
Matches: 91, Mismatches: 5, Indels: 33
0.71 0.04 0.26
Matches are distributed among these distances:
15 3 0.03
16 5 0.05
17 48 0.53
18 19 0.21
20 1 0.01
21 4 0.04
22 11 0.12
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (17 bp):
AAAAATTTCCGTGTTTC
Found at i:10791058 original size:34 final size:33
Alignment explanation
Indices: 10791002--10791091 Score: 110
Period size: 34 Copynumber: 2.6 Consensus size: 33
10790992 GTTTTTTTTA
10791002 AAAAATTTCGTGTTTTCAAAAATTCTCA-CGTTTC
1 AAAAATTTCGTGTTTTC-AAAATTC-CAGCGTTTC
*
10791036 AAAAATCTTCGTGTTTTCAAAATTCCAGTGTTTC
1 AAAAAT-TTCGTGTTTTCAAAATTCCAGCGTTTC
* *
10791070 AAAAATTTTCATGTTTTAAAAA
1 AAAAA-TTTCGTGTTTTCAAAA
10791092 AAGTGTTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
33 2 0.04
34 36 0.72
35 12 0.24
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (33 bp):
AAAAATTTCGTGTTTTCAAAATTCCAGCGTTTC
Found at i:10791126 original size:49 final size:49
Alignment explanation
Indices: 10791046--10791201 Score: 136
Period size: 59 Copynumber: 3.0 Consensus size: 49
10791036 AAAAATCTTC
*
10791046 GTGTTTTCAAAATTCCAGTGTTTCAAAAATTTTCATGTTTT-AAAAAAA
1 GTGTTTTCAAAATTCCAGTATTTCAAAAATTTTCATGTTTTCAAAAAAA
* ** *
10791094 GTGTTTTCAAAAATTCCCGTATTTTGAAAATTTTCTTGTTTTCAAAAAAAAA
1 GTGTTTTC-AAAATTCCAGTATTTCAAAAATTTTCATGTTTTC--AAAAAAA
*
10791146 TTTCTGTGTTTTACAAAAAATTCTC-GTCTTTCAAAAATTTTCATGTTTTCAAAAAA
1 -----GTGTTTT-C--AAAATTC-CAGTATTTCAAAAATTTTCATGTTTTCAAAAAA
10791202 TTGACCGTGT
Statistics
Matches: 87, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
48 8 0.09
49 28 0.32
52 7 0.08
57 13 0.15
58 1 0.01
59 29 0.33
60 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (49 bp):
GTGTTTTCAAAATTCCAGTATTTCAAAAATTTTCATGTTTTCAAAAAAA
Found at i:10791145 original size:22 final size:23
Alignment explanation
Indices: 10791120--10791165 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
10791110 CCGTATTTTG
*
10791120 AAAATTTTCT-TGTTTT-CAAAA
1 AAAAATTTCTGTGTTTTACAAAA
10791141 AAAAATTTCTGTGTTTTACAAAA
1 AAAAATTTCTGTGTTTTACAAAA
10791164 AA
1 AA
10791166 TTCTCGTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
22 6 0.27
23 7 0.32
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (23 bp):
AAAAATTTCTGTGTTTTACAAAA
Found at i:10791251 original size:36 final size:36
Alignment explanation
Indices: 10791146--10791251 Score: 108
Period size: 36 Copynumber: 2.9 Consensus size: 36
10791136 CAAAAAAAAA
* * *
10791146 TTTCTGTGTTTTACAAAAAATTCTCGTCTTTCAAAAAT
1 TTTC-GTGTTTTA-AAAAAATACTCGTGTTTCATAAAT
* *
10791184 TTTCATGTTTTCAAAAAATTGAC-CGTG-TTCATAAAT
1 TTTCGTGTTTT-AAAAAAAT-ACTCGTGTTTCATAAAT
*
10791220 TTTCGTGTTTTAAAAAAATCCTCGTGTTTCAT
1 TTTCGTGTTTTAAAAAAATACTCGTGTTTCAT
10791252 TTTTTATCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
34 1 0.02
35 11 0.20
36 23 0.41
37 15 0.27
38 6 0.11
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.44
Consensus pattern (36 bp):
TTTCGTGTTTTAAAAAAATACTCGTGTTTCATAAAT
Found at i:10791311 original size:17 final size:17
Alignment explanation
Indices: 10791289--10791365 Score: 50
Period size: 17 Copynumber: 4.4 Consensus size: 17
10791279 AACAAATTTT
10791289 GTGTTTTAAAAATCTTC
1 GTGTTTTAAAAATCTTC
* **
10791306 GTGTTTAAAAAAGAAAATTC
1 GTGTTT--TAAA-AATCTTC
*
10791326 GTGTTTCAAAAAATC-TC
1 GTGTTT-TAAAAATCTTC
* *
10791343 GTG-TTTCAAAATTTTC
1 GTGTTTTAAAAATCTTC
10791359 GTGTTTT
1 GTGTTTT
10791366 TTTTAAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
15 5 0.11
16 7 0.15
17 14 0.30
18 2 0.04
19 7 0.15
20 11 0.24
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.43
Consensus pattern (17 bp):
GTGTTTTAAAAATCTTC
Found at i:10791311 original size:37 final size:37
Alignment explanation
Indices: 10791270--10791353 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
10791260 AAAATTTTTA
* * *
10791270 TGTTTTCAAAACAAATTTTGTGTTT-TAAAAATCTTCG
1 TGTTTTCAAAACAAAATTCGTGTTTCAAAAAATC-TCG
** *
10791307 TGTTTAAAAAAGAAAATTCGTGTTTCAAAAAATCTCG
1 TGTTTTCAAAACAAAATTCGTGTTTCAAAAAATCTCG
10791344 TG-TTTCAAAA
1 TGTTTTCAAAA
10791354 TTTTCGTGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
36 6 0.16
37 25 0.66
38 7 0.18
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (37 bp):
TGTTTTCAAAACAAAATTCGTGTTTCAAAAAATCTCG
Found at i:10791353 original size:16 final size:16
Alignment explanation
Indices: 10791319--10791364 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
10791309 TTTAAAAAAG
10791319 AAAATTCGTGTTTCAA
1 AAAATTCGTGTTTCAA
10791335 AAAATCTCGTGTTTCAA
1 AAAAT-TCGTGTTTCAA
**
10791352 AATTTTCGTGTTT
1 AAAATTCGTGTTT
10791365 TTTTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (16 bp):
AAAATTCGTGTTTCAA
Found at i:10792669 original size:31 final size:31
Alignment explanation
Indices: 10792631--10792692 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
10792621 AATCCATCTC
10792631 ATCATTTATTGCTTCTTTCCAAAAAAAAGAG
1 ATCATTTATTGCTTCTTTCCAAAAAAAAGAG
*
10792662 ATCATTTATTGCTTCTTTCCAAAAAACAGAG
1 ATCATTTATTGCTTCTTTCCAAAAAAAAGAG
10792693 TCTTGAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (31 bp):
ATCATTTATTGCTTCTTTCCAAAAAAAAGAG
Found at i:10796851 original size:18 final size:20
Alignment explanation
Indices: 10796810--10796856 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
10796800 TATTCCAAGC
* *
10796810 TCAATATCAGTCAATATTTT
1 TCAATATCAATCAATATTTA
10796830 TCAATATCAATC-A-ATTTA
1 TCAATATCAATCAATATTTA
10796848 TCAATATCA
1 TCAATATCA
10796857 TTTAGCAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 13 0.52
19 1 0.04
20 11 0.44
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (20 bp):
TCAATATCAATCAATATTTA
Found at i:10798217 original size:3 final size:3
Alignment explanation
Indices: 10798209--10798258 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
10798199 CTTTATATTT
* * * *
10798209 TAA TAA TAA TAA TAA TAA TAA T-A TTA TAA TTA TAA TTA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10798256 TAA
1 TAA
10798259 ATATCTATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:10802034 original size:42 final size:43
Alignment explanation
Indices: 10801931--10802090 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
10801921 ATATGTGTTA
* * * *
10801931 TCATGTAAAACCAC-GTCTGGGACGTTGGCATCGATTTGTGATT
1 TCATGTAAGACC-CTGTCTGGGACATTGGCATCGATATATGATT
* * *
10801974 TACATGTTAGACCATGTCTGAGACATTGGCATCG-TATATGATT
1 T-CATGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATT
* * * *
10802017 TCATGTAAGACCCTGTCTGGGATAGTAGCATCGATATTTGATT
1 TCATGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATT
* * *
10802060 ACATGTAAGACGAC-GTCTGGGACGTTGGCAT
1 TCATGTAAGAC-CCTGTCTGGGACATTGGCAT
10802091 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
42 26 0.28
43 40 0.43
44 27 0.29
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TCATGTAAGACCCTGTCTGGGACATTGGCATCGATATATGATT
Found at i:10802035 original size:86 final size:85
Alignment explanation
Indices: 10801931--10802090 Score: 191
Period size: 86 Copynumber: 1.9 Consensus size: 85
10801921 ATATGTGTTA
* * * *
10801931 TCATGTAAAACCACGTCTGGGA-CGTTGGCATCGAT-TTGTGATTTACATGTTAGACCATGTCTG
1 TCATGTAAAACCACGTCTGGGATAG-TAGCATCGATATT-TGA-TTACATGTAAGACCACGTCTG
10801994 AGACATTGGCATCGTATATGATT
63 AGACATTGGCATCGTATATGATT
* * *
10802017 TCATGTAAGACC-CTGTCTGGGATAGTAGCATCGATATTTGATTACATGTAAGACGACGTCTGGG
1 TCATGTAAAACCAC-GTCTGGGATAGTAGCATCGATATTTGATTACATGTAAGACCACGTCTGAG
*
10802081 ACGTTGGCAT
65 ACATTGGCAT
10802091 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
85 29 0.46
86 31 0.49
87 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (85 bp):
TCATGTAAAACCACGTCTGGGATAGTAGCATCGATATTTGATTACATGTAAGACCACGTCTGAGA
CATTGGCATCGTATATGATT
Found at i:10802059 original size:43 final size:43
Alignment explanation
Indices: 10801931--10802070 Score: 124
Period size: 44 Copynumber: 3.3 Consensus size: 43
10801921 ATATGTGTTA
* * * *
10801931 TCATGTAAAACCACGTCTGGGAC-GTTGGCATCGAT-TTGTGATT
1 TCATGTAAGACCATGTCTGAGACAG-TAGCATCGATATT-TGATT
* * * *
10801974 TACATGTTAGACCATGTCTGAGACATTGGCATCG-TATATGATT
1 T-CATGTAAGACCATGTCTGAGACAGTAGCATCGATATTTGATT
* * *
10802017 TCATGTAAGACCCTGTCTGGGATAGTAGCATCGATATTTGATT
1 TCATGTAAGACCATGTCTGAGACAGTAGCATCGATATTTGATT
*
10802060 ACATGTAAGAC
1 TCATGTAAGAC
10802071 GACGTCTGGG
Statistics
Matches: 79, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.33
43 26 0.33
44 27 0.34
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TCATGTAAGACCATGTCTGAGACAGTAGCATCGATATTTGATT
Found at i:10817720 original size:22 final size:22
Alignment explanation
Indices: 10817695--10817737 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10817685 TATCTAAATA
10817695 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
10817717 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
10817738 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:10817741 original size:11 final size:11
Alignment explanation
Indices: 10817702--10817742 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
10817692 ATAATAACAA
10817702 CAAAATAGTAG
1 CAAAATAGTAG
* *
10817713 CAACATAATAG
1 CAAAATAGTAG
*
10817724 TAAAATAGTAG
1 CAAAATAGTAG
10817735 CAAAATAG
1 CAAAATAG
10817743 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:10817914 original size:13 final size:13
Alignment explanation
Indices: 10817896--10817922 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10817886 TTAAACCTGT
10817896 CTATATTTTGGGC
1 CTATATTTTGGGC
10817909 CTATATTTTGGGC
1 CTATATTTTGGGC
10817922 C
1 C
10817923 AAACCCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (13 bp):
CTATATTTTGGGC
Found at i:10822716 original size:32 final size:31
Alignment explanation
Indices: 10822667--10822726 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
10822657 TTTGAGATTG
*
10822667 TTTTATATAAAAAATTCA-ATTAAATTATTTT
1 TTTTAAATAAAAAATTCACA-TAAATTATTTT
10822698 TTTTAAATGAAAAAATTCACATAAATTAT
1 TTTTAAAT-AAAAAATTCACATAAATTAT
10822727 CACATGAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 7 0.27
32 18 0.69
33 1 0.04
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (31 bp):
TTTTAAATAAAAAATTCACATAAATTATTTT
Found at i:10830057 original size:21 final size:21
Alignment explanation
Indices: 10830016--10830057 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10830006 TCTAATATAA
* *
10830016 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
10830037 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
10830058 CATTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:10830253 original size:11 final size:11
Alignment explanation
Indices: 10830239--10830303 Score: 51
Period size: 11 Copynumber: 5.7 Consensus size: 11
10830229 TGTTTTTCAA
10830239 TATGTATATAT
1 TATGTATATAT
*
10830250 TATGTAAATATTT
1 TATGT--ATATAT
10830263 TGATGT-TATAT
1 T-ATGTATATAT
* *
10830274 TATATATGTAT
1 TATGTATATAT
* *
10830285 TTTTTATATAT
1 TATGTATATAT
10830296 TATGTATA
1 TATGTATA
10830304 CATATATTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
10 3 0.07
11 28 0.68
13 6 0.15
14 4 0.10
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (11 bp):
TATGTATATAT
Found at i:10843449 original size:28 final size:28
Alignment explanation
Indices: 10843399--10843509 Score: 84
Period size: 28 Copynumber: 3.9 Consensus size: 28
10843389 CCATTCAGAA
* *
10843399 ATCAGTGTTAA-CTAGGCCTTAGCCCAT
1 ATCAGTATTAATCTAGGCCATAGCCCAT
*
10843426 ATCAGTATTAATCTAGGCCATAGCCCCT
1 ATCAGTATTAATCTAGGCCATAGCCCAT
* *
10843454 -TACAGTAATAGAGTATACTGGGCC-TAGCCCAT
1 AT-CAGT-AT-TA--AT-CTAGGCCATAGCCCAT
* *
10843486 ATCAGTATCAATCTGGGCCATAGC
1 ATCAGTATTAATCTAGGCCATAGC
10843510 TCTATACAAG
Statistics
Matches: 68, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
27 18 0.26
28 24 0.35
29 2 0.03
30 2 0.03
31 2 0.03
32 13 0.19
33 7 0.10
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (28 bp):
ATCAGTATTAATCTAGGCCATAGCCCAT
Found at i:10851129 original size:14 final size:14
Alignment explanation
Indices: 10851110--10851143 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10851100 GCTGAGGTAA
*
10851110 TTTCAATTTCTGTT
1 TTTCAATTTCTGCT
10851124 TTTCAATTTCTGCT
1 TTTCAATTTCTGCT
10851138 TTTCAA
1 TTTCAA
10851144 AAAATCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTGCT
Found at i:10851162 original size:88 final size:84
Alignment explanation
Indices: 10851050--10851263 Score: 283
Period size: 88 Copynumber: 2.5 Consensus size: 84
10851040 GTATTTTGAT
10851050 TTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGG-GCATGCTGAGGTAATTT-
1 TTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-AGGTGCATGCTGAGGT-ATTTC
10851113 CAATTTCTGTTTTTCAATTTC-TG
64 CAATTTCTG-TTTT-AA-TTCATG
* * **
10851136 CTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTTTATGCTGAGGTATTTC
1 -TTTTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTAGGTGCATGCTGAGGTATTTC
10851201 CAATTTCTGTTTTAATTCATG
64 CAATTTCTGTTTTAATTCATG
*
10851222 TTTTCAAAAATCAACTCATATTACGAGAA-GTGAGTTGAGCCT
1 TTTTCAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCT
10851264 TTTAATTTCG
Statistics
Matches: 116, Mismatches: 6, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
84 33 0.28
85 9 0.08
86 4 0.03
87 15 0.13
88 55 0.47
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (84 bp):
TTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTAGGTGCATGCTGAGGTATTTCCA
ATTTCTGTTTTAATTCATG
Found at i:10851291 original size:54 final size:54
Alignment explanation
Indices: 10851210--10851338 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
10851200 CCAATTTCTG
10851210 TTTTAAT-TC-ATGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCC
1 TTTTAATGTCGAT-TTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCC
* * * *
10851263 TTTTAATTTCGGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATGTCGATTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCC
*
10851317 TTTTAATGTCTATTTTTCAAAA
1 TTTTAATGTCGATTTTTCAAAA
10851339 TCTACTTTTC
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 7 0.10
54 60 0.88
55 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (54 bp):
TTTTAATGTCGATTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCC
Found at i:10851511 original size:89 final size:90
Alignment explanation
Indices: 10851330--10851515 Score: 227
Period size: 89 Copynumber: 2.1 Consensus size: 90
10851320 TAATGTCTAT
* * *
10851330 TTTTCAAAATCTACTTTTCAATTTATACTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTT
1 TTTTCAAAATCTACTTTTCAAATTATACGTTTCAAAAAATCAACTCATATAGCGAGAAGTGAGTT
* * *
10851395 GAGCCTCGGGTCACATAACGAGGTA
66 GAGCCTCGGCTCACAGAACGAGCTA
*
10851420 TTTTCAAAA-CTTACTTTTCAAATTA-A-GTTTCAAAAAAATCAACTCATATAGCGAGAGGTGAG
1 TTTTCAAAATC-TACTTTTCAAATTATACGTTTC-AAAAAATCAACTCATATAGCGAGAAGTGAG
* **
10851482 TTGAGCCTTGGCTCAC-GCGCTGAGCTA
64 TTGAGCCTCGGCTCACAGAAC-GAGCTA
10851509 TTTTCAA
1 TTTTCAA
10851516 TTTCTATTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
88 5 0.06
89 56 0.67
90 22 0.27
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (90 bp):
TTTTCAAAATCTACTTTTCAAATTATACGTTTCAAAAAATCAACTCATATAGCGAGAAGTGAGTT
GAGCCTCGGCTCACAGAACGAGCTA
Found at i:10851830 original size:37 final size:37
Alignment explanation
Indices: 10851779--10852037 Score: 408
Period size: 37 Copynumber: 7.2 Consensus size: 37
10851769 ACATTAGAGA
*
10851779 AGATTGAAGCTACAAGGCGTATATCAGAAGATGCAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
10851816 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
*
10851853 AGATTGAAGTTACAAGGCGTATATCAGAAGATACAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
10851890 AGATTGAAGTTACAAGGCG----T-AG-AGA--CAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
*
10851919 AGATTGAAGTTACAAGGCGTATATCAGAAAATGCAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
10851956 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
* *
10851993 AGATTGAAGCTACAAGGCGTATATCAGAATATGCAGT
1 AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
*
10852030 GGATTGAA
1 AGATTGAA
10852038 CCAAAGCTAC
Statistics
Matches: 207, Mismatches: 7, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
29 23 0.11
31 3 0.01
32 2 0.01
33 2 0.01
34 2 0.01
35 2 0.01
37 173 0.84
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.24
Consensus pattern (37 bp):
AGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGT
Found at i:10851887 original size:21 final size:21
Alignment explanation
Indices: 10851784--10851887 Score: 57
Period size: 21 Copynumber: 5.4 Consensus size: 21
10851774 AGAGAAGATT
*
10851784 GAAGCTACAAGGCGTATATCA
1 GAAGATACAAGGCGTATATCA
* * *
10851805 GAAGATGC-A---GTAGAT-T
1 GAAGATACAAGGCGTATATCA
*
10851821 GAAGTTACAAGGCGTATATCA
1 GAAGATACAAGGCGTATATCA
* * *
10851842 GAAGATGC-A---GTAGAT-T
1 GAAGATACAAGGCGTATATCA
*
10851858 GAAGTTACAAGGCGTATATCA
1 GAAGATACAAGGCGTATATCA
10851879 GAAGATACA
1 GAAGATACA
10851888 GTAGATTGAA
Statistics
Matches: 56, Mismatches: 17, Indels: 20
0.60 0.18 0.22
Matches are distributed among these distances:
16 12 0.21
17 12 0.21
20 12 0.21
21 20 0.36
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.22
Consensus pattern (21 bp):
GAAGATACAAGGCGTATATCA
Found at i:10851955 original size:140 final size:140
Alignment explanation
Indices: 10851779--10852037 Score: 464
Period size: 140 Copynumber: 1.9 Consensus size: 140
10851769 ACATTAGAGA
*
10851779 AGATTGAAGCTACAAGGCGTATATCAGAAGATGCAGTAGATTGAAGTTACAAGGCGTATATCAGA
1 AGATTGAAGCTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATATCAGA
*
10851844 AGATGCAGTAGATTGAAGTTACAAGGCGTATATCAGAAGATACAGTAGATTGAAGTTACAAGGCG
66 AGATGCAGTAGATTGAAGCTACAAGGCGTATATCAGAAGATACAGTAGATTGAAGTTACAAGGCG
10851909 TAGAGACAGT
131 TAGAGACAGT
*
10851919 AGATTGAAGTTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATATCAGA
1 AGATTGAAGCTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATATCAGA
* * *
10851984 AGATGCAGTAGATTGAAGCTACAAGGCGTATATCAGAATATGCAGTGGATTGAA
66 AGATGCAGTAGATTGAAGCTACAAGGCGTATATCAGAAGATACAGTAGATTGAA
10852038 CCAAAGCTAC
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 113 1.00
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.24
Consensus pattern (140 bp):
AGATTGAAGCTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATATCAGA
AGATGCAGTAGATTGAAGCTACAAGGCGTATATCAGAAGATACAGTAGATTGAAGTTACAAGGCG
TAGAGACAGT
Found at i:10851993 original size:103 final size:103
Alignment explanation
Indices: 10851812--10852013 Score: 377
Period size: 103 Copynumber: 2.0 Consensus size: 103
10851802 TCAGAAGATG
*
10851812 CAGTAGATTGAAGTTACAAGGCGTATATCAGAAGATGCAGTAGATTGAAGTTACAAGGCGTATAT
1 CAGTAGATTGAAGTTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATAT
*
10851877 CAGAAGATACAGTAGATTGAAGTTACAAGGCGTAGAGA
66 CAGAAGATACAGTAGATTGAAGCTACAAGGCGTAGAGA
10851915 CAGTAGATTGAAGTTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATAT
1 CAGTAGATTGAAGTTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATAT
*
10851980 CAGAAGATGCAGTAGATTGAAGCTACAAGGCGTA
66 CAGAAGATACAGTAGATTGAAGCTACAAGGCGTA
10852014 TATCAGAATA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 96 1.00
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.23
Consensus pattern (103 bp):
CAGTAGATTGAAGTTACAAGGCGTATATCAGAAAATGCAGTAGATTGAAGTTACAAGGCGTATAT
CAGAAGATACAGTAGATTGAAGCTACAAGGCGTAGAGA
Found at i:10852569 original size:17 final size:17
Alignment explanation
Indices: 10852547--10852584 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10852537 CACTGGCCAC
* *
10852547 CAGCCACCTGCCCACTG
1 CAGCCACCTACCCACTA
10852564 CAGCCACCTACCCACTA
1 CAGCCACCTACCCACTA
10852581 CAGC
1 CAGC
10852585 ACCGCCCCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.53, G:0.13, T:0.11
Consensus pattern (17 bp):
CAGCCACCTACCCACTA
Found at i:10853999 original size:21 final size:21
Alignment explanation
Indices: 10853958--10853999 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10853948 TCTAATATAA
* *
10853958 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
10853979 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
10854000 CATTATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:10854195 original size:11 final size:11
Alignment explanation
Indices: 10854179--10854246 Score: 57
Period size: 11 Copynumber: 6.0 Consensus size: 11
10854169 TGTTTTTCAA
10854179 TATGTATATAT
1 TATGTATATAT
*
10854190 TATGTAAATATTT
1 TATGT--ATATAT
10854203 TGATGT-TATAT
1 T-ATGTATATAT
* *
10854214 TATATATGTAT
1 TATGTATATAT
* *
10854225 TTTTTATATAT
1 TATGTATATAT
10854236 TATGTATATAT
1 TATGTATATAT
10854247 ATATATTTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
10 3 0.07
11 31 0.70
13 6 0.14
14 4 0.09
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (11 bp):
TATGTATATAT
Found at i:10854229 original size:26 final size:28
Alignment explanation
Indices: 10854178--10854266 Score: 69
Period size: 28 Copynumber: 3.2 Consensus size: 28
10854168 TTGTTTTTCA
* * *
10854178 ATATGTATATAT-TATGTAAATATTTT-G
1 ATAT-TATATATATATATATATTTTTTAG
* * *
10854205 ATGTTATAT-TATATATGTATTTTTTAT
1 ATATTATATATATATATATATTTTTTAG
*
10854232 ATATTATGTATATATATATATTTTTTCA-
1 ATATTATATATATATATATATTTTTT-AG
10854260 ATATTAT
1 ATATTAT
10854267 TAGTTTTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 10 0.20
28 22 0.45
29 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.07, T:0.57
Consensus pattern (28 bp):
ATATTATATATATATATATATTTTTTAG
Found at i:10854281 original size:18 final size:18
Alignment explanation
Indices: 10854228--10854281 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 18
10854218 TATGTATTTT
* *
10854228 TTATATATTATGTATATA
1 TTATATATTTTTTATATA
10854246 -TATATATTTTTTCA-ATA
1 TTATATATTTTTT-ATATA
10854263 TTAT-TAGTTTTTTATATA
1 TTATATA-TTTTTTATATA
10854281 T
1 T
10854282 ATACTATTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (18 bp):
TTATATATTTTTTATATA
Found at i:10861526 original size:3 final size:3
Alignment explanation
Indices: 10861518--10861543 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10861508 AATCCTTCAA
10861518 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
10861544 AGAAACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10864993 original size:27 final size:27
Alignment explanation
Indices: 10864963--10865017 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
10864953 TACGATGAAT
10864963 TCATATCCATTGATTAGTAGAAAAACA
1 TCATATCCATTGATTAGTAGAAAAACA
10864990 TCATATCCATTGATTAGTAGAAAAACA
1 TCATATCCATTGATTAGTAGAAAAACA
10865017 T
1 T
10865018 ACCTTAGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.31
Consensus pattern (27 bp):
TCATATCCATTGATTAGTAGAAAAACA
Found at i:10869137 original size:21 final size:21
Alignment explanation
Indices: 10869112--10869154 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
10869102 ATAGGTTAAT
*
10869112 TTTATCTTATTAAAGAGCATA
1 TTTATCATATTAAAGAGCATA
*
10869133 TTTATCATATTAAAGATCATA
1 TTTATCATATTAAAGAGCATA
10869154 T
1 T
10869155 ATAGCATGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (21 bp):
TTTATCATATTAAAGAGCATA
Found at i:10870314 original size:18 final size:18
Alignment explanation
Indices: 10870291--10870343 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
10870281 CTATTGCTTT
*
10870291 ATTTAACTTAAGTTTTCA
1 ATTTAAATTAAGTTTTCA
*
10870309 ATTTAAATTTAGTTTT-A
1 ATTTAAATTAAGTTTTCA
*
10870326 ATTTAATTTAAAGTTTTC
1 ATTTAAATT-AAGTTTTC
10870344 GATTGAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 9 0.31
18 20 0.69
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.55
Consensus pattern (18 bp):
ATTTAAATTAAGTTTTCA
Found at i:10872739 original size:3 final size:3
Alignment explanation
Indices: 10872695--10872719 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10872685 CTTGGATGTA
10872695 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
10872720 TTTTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:10880099 original size:88 final size:88
Alignment explanation
Indices: 10879914--10880526 Score: 335
Period size: 89 Copynumber: 6.9 Consensus size: 88
10879904 TATAATGGCG
*
10879914 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATT-AAA-CATTATCTCCCTGAA-
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG-C-TTAAAATC-TTATCTCCCTGAAG
* *
10879976 TTCGCAGTGGAGCAGATTGAAGCCACTA--
63 TT-GCAGTGGAGCAAACTGAAG--A-TAGC
* * * * *
10880004 AACCTTATCTCCCTGAAGTCT-CAGTAGAGTAGGTTGAAG-TTAAAGTCTTATCTCCTTGAAGTT
1 AATCTTATCTCCCTGAAGT-TGCAGTAGAGCAGATTGAAGCTTAAAATCTTATCTCCCTGAAGTT
10880067 GCAGTGGAGCAAACTGAAGATAGC
65 GCAGTGGAGCAAACTGAAGATAGC
* * * *
10880091 GAATCTTATTTCCCTG-AGTTGCAGCAGAACAGATTGAAGCTATAAATAAACAAATCTTATCTCT
1 -AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGC--T---T--A-AAATCTTATCTCC
* ** *
10880155 CTGAAGTTGCAGTAGAGC--A--GATCATATC
57 CTGAAGTTGCAGTGGAGCAAACTGAAGATAGC
* * * * *
10880183 AAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAA-ATTAAAATCTTATCTCCCTGAAGTT
1 AA-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTTAAAATCTTATCTCCCTGAAGTT
* *
10880247 GTAGTGGAGCAAACTGGAGATAGC
65 GCAGTGGAGCAAACTGAAGATAGC
* * * ** ** ** * *
10880271 AGATCTTATCTCCTTGAAGTTACAGCAGAATAGATCAAAG-AAAGCAAACCTTATCTCTCTGAAG
1 A-ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTTA--AAATCTTATCTCCCTGAAG
* * * ***
10880335 TTGCTGTAGAGTAGGTTGAAG-TAGC
63 TTGCAGTGGAGCAAACTGAAGATAGC
* * * * * * *
10880360 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGGAG-ATAGCAGATCTTATTTCCATGAAG
1 AA-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTTA--AAATCTTATCTCCCTGAAG
* * * **
10880424 TTGCAGTGGAACAGATTGAAGCCA-C
63 TTGCAGTGGAGCAAACTGAAGATAGC
* * ** *
10880449 AATCCTTATCTCTCTGAAGTTGCAGTAGAGCATGA-TAAAAATATACAAACCTTATCTCCCTGAA
1 AAT-CTTATCTCCCTGAAGTTGCAGTAGAGCA-GATTGAAGCT-TA-AAATCTTATCTCCCTGAA
10880513 GTTGCAGTGGAGCA
62 GTTGCAGTGGAGCA
10880527 GGTTGAAGTT
Statistics
Matches: 398, Mismatches: 92, Indels: 66
0.72 0.17 0.12
Matches are distributed among these distances:
84 28 0.07
85 3 0.01
86 3 0.01
87 20 0.05
88 78 0.20
89 101 0.25
90 96 0.24
91 5 0.01
92 17 0.04
93 18 0.05
94 1 0.00
95 1 0.00
96 27 0.07
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTTAAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAAACTGAAGATAGC
Found at i:10880220 original size:180 final size:177
Alignment explanation
Indices: 10880006--10880535 Score: 486
Period size: 180 Copynumber: 3.0 Consensus size: 177
10879996 AGCCACTAAA
** * * *
10880006 CCTTATCTCCCTGAAGTCTCAGTAGAGTAGGTTGAAGTTAAAGTCTTATCTCCTTGAAGTTGCAG
1 CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCATGAAGTTGCAG
* *
10880071 TGGAGCAAACTGAAGATAGC-GAATCTTATTTCCCTG-AGTTGCAGCAGAACAGATTGAAGCTAT
66 TGGAGCAAACTGAAGATAGCAG-ATCTTATCTCCCTGAAGTTACAGCAGAACAGA-T----C-A-
* * *
10880134 AA-ATAAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT-CA-TATCAAG
123 AAGA-AAACAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAGTAGCAAG
* * * *
10880186 CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAATTAAAATCTTATCTCCCTGAAGTTGTAG
1 CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCATGAAGTTGCAG
* * * *
10880251 TGGAGCAAACTGGAGATAGCAGATCTTATCTCCTTGAAGTTACAGCAGAATAGATCAAAGAAAGC
66 TGGAGCAAACTGAAGATAGCAGATCTTATCTCCCTGAAGTTACAGCAGAACAGATCAAAGAAAAC
* * *
10880316 AAACCTTATCTCTCTGAAGTTGCTGTAGAGTAGGTTGAAGTAGCAAG
131 AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAGTAGCAAG
* * ** * * * *
10880363 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGGAGATAGCAGATCTTATTTCCATGAAGTTGC
1 CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAGTTA-AAG-TCTTATCTCCATGAAGTTGC
* * * ** * * * *
10880428 AGTGGAACAGATTGAAGCCA-CA-ATCCTTATCTCTCTGAAGTTGCAGTAGAGCATGAT-AAA-A
64 AGTGGAGCAAACTGAAGATAGCAGAT-CTTATCTCCCTGAAGTTACAGCAGAACA-GATCAAAGA
* * *
10880489 ATATACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT
127 A-A-ACAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAGT
10880536 TACCAATTCT
Statistics
Matches: 289, Mismatches: 49, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
174 34 0.12
175 4 0.01
176 2 0.01
177 43 0.15
178 29 0.10
179 72 0.25
180 89 0.31
181 16 0.06
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (177 bp):
CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCATGAAGTTGCAG
TGGAGCAAACTGAAGATAGCAGATCTTATCTCCCTGAAGTTACAGCAGAACAGATCAAAGAAAAC
AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAGTAGCAAG
Found at i:10880387 original size:134 final size:132
Alignment explanation
Indices: 10880186--10880526 Score: 405
Period size: 134 Copynumber: 2.5 Consensus size: 132
10880176 TCATATCAAG
* * * *
10880186 CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAATTA-AAATCTTATCTCCCTGAAGTTGTA
1 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAA-TACAAATCTTATCTCCCTGAAGTTGCA
* *
10880250 GTGGAGCAAACTGGAGATAGCAGATCTTATCTCCTTGAAGTTACAGCAGAATAGATCAAAGAAAG
65 GTGGAGCAAACTGGAGATAGCAGATCTTATCTCCATGAAGTTACAGCAGAACAGATCAAAGAAA-
10880315 CAAA
129 CAAA
* * * *
10880319 CCTTATCTCTCTGAAGTTGCTGTAGAGTAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCA
1 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATA-CAAATCTTATCTCCCTGAAGTTGCA
* * * ** ** **
10880384 GTGGAGCAGACTGGAGATAGCAGATCTTATTTCCATGAAGTTGCAGTGGAACAGATTGAAGCCAC
65 GTGGAGCAAACTGGAGATAGCAGATCTTATCTCCATGAAGTTACAGCAGAACAGATCAAAGAAAC
*
10880449 AAT
130 AAA
* ** *
10880452 CCTTATCTCTCTGAAGTTGCAGTAGAGCATGATAAAAATATACAAACCTTATCTCCCTGAAGTTG
1 CCTTATCTCTCTGAAGTTGCAGTAGAGCA-GGT-TGAA-ATACAAATCTTATCTCCCTGAAGTTG
10880517 CAGTGGAGCA
63 CAGTGGAGCA
10880527 GGTTGAAGTT
Statistics
Matches: 175, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
132 2 0.01
133 61 0.35
134 77 0.44
135 33 0.19
136 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATACAAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAAACTGGAGATAGCAGATCTTATCTCCATGAAGTTACAGCAGAACAGATCAAAGAAACA
AA
Found at i:10880472 original size:44 final size:45
Alignment explanation
Indices: 10879874--10881016 Score: 366
Period size: 45 Copynumber: 25.4 Consensus size: 45
10879864 AATCTTATAC
*
10879874 CCCTGAAGTTGCAGTGG-GACGGATTGAAGTTATAATGGCGAAT-CTTATCT
1 CCCTGAAGTTGCAGTGGAG-CAGATTGAAG--AT-A--GC-AATCCTTATCT
** ** * *
10879924 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATTAAACATTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
** *
10879969 CCCTGAA-TTCGCAGTGGAGCAGATTGAAGCCA-CTAAACCTTATCT
1 CCCTGAAGTT-GCAGTGGAGCAGATTGAAGATAGC-AATCCTTATCT
* * * *
10880014 CCCTGAAGTCT-CAGTAGAGTAGGTTGAAGTTA--AAGT-CTTATCT
1 CCCTGAAGT-TGCAGTGGAGCAGATTGAAGATAGCAA-TCCTTATCT
* * * *
10880057 CCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAAT-CTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCCTTATCT
** * *
10880102 CCCTG-AGTTGCAGCAGAACAGATTGAAGCTATAAATAAACAAAT-CTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG------AT-AGC-AATCCTTATCT
* * * * *
10880153 CTCTGAAGTTGCAGTAGAGCAGA-T---CATATCAAGCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * *
10880194 CCCTGAAGTAGCAGTGGAGCAGGTTGAA-ATTA-AAAT-CTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAGCAATCCTTATCT
* * * *
10880237 CCCTGAAGTTGTAGTGGAGCAAACTGGAGATAGCAGAT-CTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-ATCCTTATCT
* * ** ** ** * *
10880282 CCTTGAAGTTACAGCAGAATAGATCAAAGAAAGCAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * * * *
10880327 CTCTGAAGTTGCTGTAGAGTAGGTTGAAG-TAGCAAGT-CTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA-TCCTTATCT
* * *
10880371 CCCTGAAGTTGCAGTGGAGCAGACTGGAGATAGCAGAT-CTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-ATCCTTATCT
* * **
10880416 CCATGAAGTTGCAGTGGAACAGATTGAAGCCA-CAATCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * * * * *
10880460 CTCTGAAGTTGCAGTAGAGCATGA-TAAAAATATACAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-GATTGAAGATA-GCAATCCTTATCT
* * * *
10880506 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACCAATTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * ** * * * * * *
10880551 CCTTTG-AGTTTCAACGGAGTATAATAAAGCTATG-AA-ACTCT-TCT
1 CC-CTGAAGTTGCAGTGGAGCAGATTGAAGATA-GCAATCCT-TATCT
* ** * * * * * *
10880595 CCTTGAAACTACATTGGAGTAAATCGAA-ATCGCAATCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * * * * * * *
10880639 CTCTGAAGTTGCAATAGAGTAGGA-TAAAAATACACAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-GATTGAAGATA-GCAATCCTTATCT
* * ** ** **
10880685 CCCTGAAGTTGTAATGGAGCAGATCAAAGCCA-CAATATTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
** * * * * * * *
10880729 CTTTGAAGTTGCAGTAGAGCAGGA-TAAAAATACACAAACTTTATTT
1 CCCTGAAGTTGCAGTGGAGCA-GATTGAAGATA-GCAATCCTTATCT
* * * *
10880775 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACCAAT-TTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * * * * *
10880819 CCTTTG-AGTTTCAGCGGAGTAGAATGAAGCTATG-AAT-CTCT-TCT
1 CC-CTGAAGTTGCAGTGGAGCAGATTGAAGATA-GCAATCCT-TATCT
* ** * * * * *
10880863 CCTTGAAACTACATTGGAGTAAATTGAA-ATTGCAATCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * * * * * * *
10880907 CTCTGAAGTTGTAGTAGAGTAGGA-TAAAAATACACAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-GATTGAAGATA-GCAATCCTTATCT
* * * * * *
10880953 CCTTGAAGTTGCAGTGGAGCAGGTTAAAGTTACCAATTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
* * *
10880998 CCTTGAAGTTCCAGCGGAG
1 CCCTGAAGTTGCAGTGGAG
10881017 TAAATCGAAA
Statistics
Matches: 807, Mismatches: 223, Indels: 131
0.70 0.19 0.11
Matches are distributed among these distances:
40 2 0.00
41 28 0.03
42 6 0.01
43 80 0.10
44 234 0.29
45 257 0.32
46 138 0.17
47 2 0.00
50 28 0.03
51 17 0.02
52 15 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCCTTATCT
Found at i:10880549 original size:269 final size:267
Alignment explanation
Indices: 10880186--10880970 Score: 721
Period size: 268 Copynumber: 2.9 Consensus size: 267
10880176 TCATATCAAG
* * * * ** * *
10880186 CCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAAT-TA-AAATCTTATCTCCCTGAAGTTGT
1 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAAAAATATACAAACCTTATCTCCCTGAAGTTGC
*** * * *
10880249 AGTGGAGCAAACTGGAGATAGCAGA-TCTTATCTCCTTGAAGTTAC-A-GCAGAATAGATCAAAG
66 AGTGGAGCAGGTTGAAGTTACCA-ATTCTTATCTCCTTG-AGTTACAACGCAGAATA-AT-AAAG
** * ** * *
10880311 -AAAGCAAAC-CTTATCTCTCTGAAGTTGC-TGTAGAGTAGGTTGAAGTAGCAAGT-CTTATCTC
127 CAAAG-AAACTCTTATC-CT-TGAAACTACAT-TAGAGTAAATCGAAATAGCAA-TCCTTATCTC
* * ** * * * * * *
10880372 CCTGAAGTTGCAGTGGAGCA-GACTGGAGATA-GCAGATCTTATTTCCATGAAGTTGCAGTGGAA
187 CCTGAAGTTGCAATAGAGCAGGA-TAAAAATACACAAACCTTATCTCCATGAAGTTGCAATGGAA
**
10880435 CAGATTGAAGCCACAAT
251 CAGATCAAAGCCACAAT
10880452 CCTTATCTCTCTGAAGTTGCAGTAGAGCATGATAAAAATATACAAACCTTATCTCCCTGAAGTTG
1 CCTTATCTCTCTGAAGTTGCAGTAGAGCA-GATAAAAATATACAAACCTTATCTCCCTGAAGTTG
* * * *
10880517 CAGTGGAGCAGGTTGAAGTTACCAATTCTTATCTCCTTTGAGTTTCAACGGAGTATAATAAAGCT
65 CAGTGGAGCAGGTTGAAGTTACCAATTCTTATCTCC-TTGAGTTACAACGCAGAATAATAAAGCA
* * * * *
10880582 ATGAAACTCTTCTCCTTGAAACTACATTGGAGTAAATCGAAATCGCAATCCTTATCTCTCTGAAG
129 AAGAAACTCTTATCCTTGAAACTACATTAGAGTAAATCGAAATAGCAATCCTTATCTCCCTGAAG
* * * *
10880647 TTGCAATAGAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGTAATGGAGCAGATCAA
194 TTGCAATAGAGCAGGATAAAAATACACAAACCTTATCTCCATGAAGTTGCAATGGAACAGATCAA
10880712 AGCCACAAT
259 AGCCACAAT
** * * * *
10880721 ATTTATCTCTTTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAACTTTATTTCCCTGAAGTTG
1 CCTTATCTCTCTGAAGTTGCAGTAGAGCA-GATAAAAATATACAAACCTTATCTCCCTGAAGTTG
* * * * * * *
10880786 CAGTGGAGCAGGTTGAAGTTACCAATT-TTATCTCCTTTGAGTTTCAGCGGAGTAGAATGAAGCT
65 CAGTGGAGCAGGTTGAAGTTACCAATTCTTATCTCC-TTGAGTTACAACGCAGAATAATAAAGCA
* * * * * * *
10880850 ATGAATCTCTTCTCCTTGAAACTACATTGGAGTAAATTGAAATTGCAATCCTTATCTCTCTGAAG
129 AAGAAACTCTTATCCTTGAAACTACATTAGAGTAAATCGAAATAGCAATCCTTATCTCCCTGAAG
* * * * *
10880915 TTGTAGTAGAGTAGGATAAAAATACACAAACCTTATCTCCTTGAAGTTGCAGTGGA
194 TTGCAATAGAGCAGGATAAAAATACACAAACCTTATCTCCATGAAGTTGCAATGGA
10880971 GCAGGTTAAA
Statistics
Matches: 442, Mismatches: 64, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
266 26 0.06
267 7 0.02
268 200 0.45
269 190 0.43
270 13 0.03
271 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (267 bp):
CCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAAAAATATACAAACCTTATCTCCCTGAAGTTGC
AGTGGAGCAGGTTGAAGTTACCAATTCTTATCTCCTTGAGTTACAACGCAGAATAATAAAGCAAA
GAAACTCTTATCCTTGAAACTACATTAGAGTAAATCGAAATAGCAATCCTTATCTCCCTGAAGTT
GCAATAGAGCAGGATAAAAATACACAAACCTTATCTCCATGAAGTTGCAATGGAACAGATCAAAG
CCACAAT
Found at i:10880684 original size:314 final size:309
Alignment explanation
Indices: 10880050--10880707 Score: 672
Period size: 314 Copynumber: 2.1 Consensus size: 309
10880040 AAGTTAAAGT
* * *
10880050 CTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTGAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCATGAGTTGCAG
* *
10880115 CAGAACAGATTGAAGCTATAAATAAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAT
66 CAGAACAGATTGAAGCCATAAAT--AC--A-CTTATCTCTCTGAAGTTGCAGTAGAGCAGATAAT
*
10880180 ATCAAGCCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAATTAAAATCTTATCTCCCTGAAG
126 ATCAAACCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAATTAAAATCTTATCTCCCTGAAG
** ** * ** *
10880245 TTGTAGTGGAGCAAACTGGAGATAGCAGATCTTATCTCCTTGAAGTTACAGCAGAATAGATCAAA
191 TTGTAACGGAGCAAACTAAAGATAGCAAATCTTATCTCCTTGAAACTACAGCAGAATAAATCAAA
** ** * * **
10880310 GAAAGCAAACCTTATCTCTCTGAAGTTGCTGTAGAGTAGGTTGAAGTAGCAAGT
256 GAAAGCAAACCTTATCTCTCTGAAGTTGCAATAGAGTAGGTAAAAATAACAAAC
*
10880364 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGGAGATAGC-AGATCTTATTTCCATGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGA-ATCTTATTTCCATG-AGTTGC
** *
10880428 AGTGGAACAGATTGAAGCCA-CAAT-C-CTTATCTCTCTGAAGTTGCAGTAGAGCATGATAAAAA
64 AGCAGAACAGATTGAAGCCATAAATACACTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT---AA
* * * *
10880490 TATACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACCAATTCTTATCTCCTT
125 TAT-CAAACCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAATTA--AAATCTTATCTCC-C
* * *** *
10880555 TG-AGTT-TCAACGGAGTATAA-TAAAGCTATG-AAA-CTCT-TCTCCTTGAAACTACATTGGAG
186 TGAAGTTGT-AACGGAGCA-AACTAAAGATA-GCAAATCT-TATCTCCTTGAAACTACAGCAGAA
* ** *
10880614 TAAATCGAA-ATCGCAATCCTTATCTCTCTGAAGTTGCAATAGAGTAGGATAAAAATACACAAAC
247 TAAATCAAAGAAAGCAAACCTTATCTCTCTGAAGTTGCAATAGAGTAGG-TAAAAATA-ACAAAC
* *
10880678 CTTATCTCCCTGAAGTTGTAATGGAGCAGA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA
10880708 TCAAAGCCAC
Statistics
Matches: 286, Mismatches: 42, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
307 28 0.10
308 3 0.01
311 5 0.02
312 75 0.26
313 32 0.11
314 115 0.40
315 28 0.10
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (309 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCATGAGTTGCAG
CAGAACAGATTGAAGCCATAAATACACTTATCTCTCTGAAGTTGCAGTAGAGCAGATAATATCAA
ACCTTATCTCCCTGAAGTAGCAGTGGAGCAGGTTGAAATTAAAATCTTATCTCCCTGAAGTTGTA
ACGGAGCAAACTAAAGATAGCAAATCTTATCTCCTTGAAACTACAGCAGAATAAATCAAAGAAAG
CAAACCTTATCTCTCTGAAGTTGCAATAGAGTAGGTAAAAATAACAAAC
Found at i:10880782 original size:46 final size:46
Alignment explanation
Indices: 10880633--10880797 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 46
10880623 ATCGCAATCC
* * *
10880633 TTATCTCTCTGAAGTTGCAATAGAGTAGGATAAAAATACACAAACC
1 TTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAATACACAAACT
* * * **
10880679 TTATCTCCCTGAAGTTGTAATGGAGCA-GAT-CAAAGCCACAATA-T
1 TTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAATACACAA-ACT
** *
10880723 TTATCTCTTTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAACT
1 TTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAATACACAAACT
* * *
10880769 TTATTTCCCTGAAGTTGCAGTGGAGCAGG
1 TTATCTCCCTGAAGTTGCAATAGAGCAGG
10880798 TTGAAGTTAC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 30 0.32
45 8 0.08
46 57 0.60
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (46 bp):
TTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAATACACAAACT
Found at i:10880884 original size:268 final size:269
Alignment explanation
Indices: 10880409--10880974 Score: 918
Period size: 268 Copynumber: 2.1 Consensus size: 269
10880399 GATAGCAGAT
* * ** *
10880409 CTTATTTCCATGAAGTTGCAGTGGAACAGATTGAAGCCACAATCCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCATGAAGTTGCAGTGGAGCAGATCAAAGCCACAATACTTATCTCTCTGAAGTTGCAG
* *
10880474 TAGAGCATGATAAAAATATACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
66 TAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
*
10880539 CAATTCTTATCTCCTTTGAGTTTCAACGGAGTATAATAAAGCTATGAAACTCTTCTCCTTGAAAC
131 CAATTCTTATCTCCTTTGAGTTTCAACGGAGTAGAATAAAGCTATGAAACTCTTCTCCTTGAAAC
10880604 TACATTGGAGTAAATCGAAATCGCAATCCTTATCTCTCTGAAGTTGCAATAGAGTAGGATAAAAA
196 TACATTGGAGTAAATCGAAATCGCAATCCTTATCTCTCTGAAGTTGCAATAGAGTAGGATAAAAA
10880669 TACACAAAC
261 TACACAAAC
* * * * *
10880678 CTTATCTCCCTGAAGTTGTAATGGAGCAGATCAAAGCCACAATATTTATCTCTTTGAAGTTGCAG
1 CTTATCTCCATGAAGTTGCAGTGGAGCAGATCAAAGCCACAATACTTATCTCTCTGAAGTTGCAG
* *
10880743 TAGAGCAGGATAAAAATACACAAACTTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
66 TAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
* * *
10880808 CAATT-TTATCTCCTTTGAGTTTCAGCGGAGTAGAATGAAGCTATGAATCTCTTCTCCTTGAAAC
131 CAATTCTTATCTCCTTTGAGTTTCAACGGAGTAGAATAAAGCTATGAAACTCTTCTCCTTGAAAC
* * * *
10880872 TACATTGGAGTAAATTGAAATTGCAATCCTTATCTCTCTGAAGTTGTAGTAGAGTAGGATAAAAA
196 TACATTGGAGTAAATCGAAATCGCAATCCTTATCTCTCTGAAGTTGCAATAGAGTAGGATAAAAA
10880937 TACACAAAC
261 TACACAAAC
*
10880946 CTTATCTCCTTGAAGTTGCAGTGGAGCAG
1 CTTATCTCCATGAAGTTGCAGTGGAGCAG
10880975 GTTAAAGTTA
Statistics
Matches: 272, Mismatches: 25, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
268 151 0.56
269 121 0.44
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (269 bp):
CTTATCTCCATGAAGTTGCAGTGGAGCAGATCAAAGCCACAATACTTATCTCTCTGAAGTTGCAG
TAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
CAATTCTTATCTCCTTTGAGTTTCAACGGAGTAGAATAAAGCTATGAAACTCTTCTCCTTGAAAC
TACATTGGAGTAAATCGAAATCGCAATCCTTATCTCTCTGAAGTTGCAATAGAGTAGGATAAAAA
TACACAAAC
Found at i:10881112 original size:179 final size:178
Alignment explanation
Indices: 10880699--10881239 Score: 681
Period size: 179 Copynumber: 3.0 Consensus size: 178
10880689 GAAGTTGTAA
* ** *
10880699 TGGAGCAGATCAAAGCCACAATATTTATCTCTTTGAAGTTGCAGTAGAGCAGGATAAAAATACAC
1 TGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACAC
* * *
10880764 AAACTTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACCAATT-TTATCTCCTTTG-AG
66 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTTACCAATTCTTATCTCC-TTGAAG
* **
10880827 TTTCAGCGGAGTAGAATGAAGCTATGAATCTCTTCTCCTTGAAACTACAT
130 TTCCAGCGGAGTA-AATGAAGCTACAAATCTCTTCTCCTTGAAACTACAT
* * * **** * *
10880877 TGGAGTAAATTGAAATTGCAATCCTTATCTCTCTGAAGTTGTAGTAGAGTAGGATAAAAATACAC
1 TGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACAC
*
10880942 AAACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGTTACCAATTCTTATCTCCTTGAAGT
66 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTTACCAATTCTTATCTCCTTGAAGT
* * *
10881007 TCCAGCGGAGTAAATCGAAACTACAAATCTCTTCTCCTTGAGATTACAT
131 TCCAGCGGAGTAAAT-GAAGCTACAAATCTCTTCTCCTTGAAACTACAT
* * * * * *
10881056 TGGAGCAGACCGAAGCCACAATCCTTATCTCTCTAAAGTTACATTAGAGCAGGATAAATATACAT
1 TGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACAC
* * * * *
10881121 AAACGTTCTCTCCCTGAAGTTGTAGTGGAGTAGGTTAAAGTTACCAATTCTTATCTCCTTTAAGT
66 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTTACCAATTCTTATCTCCTTGAAGT
* * ** *
10881186 TCCAACGGAGTAGATTGAAGCTACAAATCTCTTCTAATTGAAACTATAT
131 TCCAGCGGAGTA-AATGAAGCTACAAATCTCTTCTCCTTGAAACTACAT
10881235 TGGAG
1 TGGAG
10881240 TAAATCAAAG
Statistics
Matches: 307, Mismatches: 52, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
178 103 0.34
179 202 0.66
180 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (178 bp):
TGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACAC
AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTTACCAATTCTTATCTCCTTGAAGT
TCCAGCGGAGTAAATGAAGCTACAAATCTCTTCTCCTTGAAACTACAT
Found at i:10881588 original size:27 final size:27
Alignment explanation
Indices: 10881553--10881607 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
10881543 AAAACCAAAG
10881553 AGCCCAAATTAGCCCTAAACCCAAACA
1 AGCCCAAATTAGCCCTAAACCCAAACA
10881580 AGCCCAAATTAGCCCTAAACCCAAACA
1 AGCCCAAATTAGCCCTAAACCCAAACA
10881607 A
1 A
10881608 ACCCTAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.36, G:0.07, T:0.11
Consensus pattern (27 bp):
AGCCCAAATTAGCCCTAAACCCAAACA
Found at i:10881618 original size:16 final size:17
Alignment explanation
Indices: 10881592--10881626 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
10881582 CCCAAATTAG
10881592 CCCTAAACCCAAACAAA
1 CCCTAAACCCAAACAAA
*
10881609 CCCT-AACCCAAATAAA
1 CCCTAAACCCAAACAAA
10881625 CC
1 CC
10881627 TGGCCCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.49, C:0.43, G:0.00, T:0.09
Consensus pattern (17 bp):
CCCTAAACCCAAACAAA
Found at i:10882925 original size:18 final size:17
Alignment explanation
Indices: 10882902--10882949 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
10882892 GATTTCATCA
10882902 TTATTATTATTTATTACC
1 TTATTATTA-TTATTACC
10882920 TTATTATTATTATTACCC
1 TTATTATTATTATTA-CC
10882938 TT-TTATT-TTATT
1 TTATTATTATTATT
10882950 TTATTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.17
17 11 0.38
18 13 0.45
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTATTATTACC
Found at i:10885029 original size:48 final size:48
Alignment explanation
Indices: 10884940--10885033 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
10884930 TTTCTTGGCT
* * *
10884940 TAAAAACGCCTAAGTCAACCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAACCTAACTTCCAACAATAAAGGATTCAACCG
*
10884988 TAAAAACGCCTAAGTC-AGCTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAACCT-AACTTC-CAACAATAAAGGATTCAAC
10885034 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 5 0.12
48 35 0.88
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAACCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:10887544 original size:48 final size:48
Alignment explanation
Indices: 10887455--10887548 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
10887445 TTTTTTGGCT
* * *
10887455 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
10887503 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
10887549 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:10890399 original size:27 final size:28
Alignment explanation
Indices: 10890369--10890423 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
10890359 CATTTTTTAA
* *
10890369 GGAATGAACTATATACATA-ATAGATTT
1 GGAAAGAAATATATACATAGATAGATTT
*
10890396 GGAAAGAAATATATACTTAGATAGATTT
1 GGAAAGAAATATATACATAGATAGATTT
10890424 TTAAATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.33
Consensus pattern (28 bp):
GGAAAGAAATATATACATAGATAGATTT
Found at i:10890447 original size:10 final size:10
Alignment explanation
Indices: 10890432--10890458 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
10890422 TTTTAAATAT
10890432 ATATATATAC
1 ATATATATAC
10890442 ATATATATAC
1 ATATATATAC
10890452 ATATATA
1 ATATATA
10890459 CATACATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:10896003 original size:13 final size:13
Alignment explanation
Indices: 10895985--10896016 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
10895975 ATAAATAAAT
10895985 AAAAATAAAATAA
1 AAAAATAAAATAA
10895998 AAAAATAAAATAA
1 AAAAATAAAATAA
10896011 ATAAAA
1 A-AAAA
10896017 AGGATTGACG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:10901432 original size:45 final size:45
Alignment explanation
Indices: 10901382--10901477 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 45
10901372 CCAGAACAGG
* * *
10901382 ACAGAGCAGAACATG-ACAAAATAGAACAGAGCAGAGTAGAATGGA
1 ACAGAGCAAAAC-TGAACAAAACAGAACAGAGCAGAGCAGAATGGA
* * *
10901427 ACAGAGCAAAACTGAACAGAACATAACAGAGCAGAGCAGAATTGA
1 ACAGAGCAAAACTGAACAAAACAGAACAGAGCAGAGCAGAATGGA
10901472 ACAGAG
1 ACAGAG
10901478 TTACGCAGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.51, C:0.16, G:0.25, T:0.08
Consensus pattern (45 bp):
ACAGAGCAAAACTGAACAAAACAGAACAGAGCAGAGCAGAATGGA
Found at i:10901443 original size:15 final size:15
Alignment explanation
Indices: 10901425--10901477 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
10901415 GAGTAGAATG
10901425 GAACAGAGCAAAACT
1 GAACAGAGCAAAACT
* * *
10901440 GAACAGAACATAACA
1 GAACAGAGCAAAACT
* * *
10901455 GAGCAGAGCAGAATT
1 GAACAGAGCAAAACT
10901470 GAACAGAG
1 GAACAGAG
10901478 TTACGCAGAG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.51, C:0.17, G:0.25, T:0.08
Consensus pattern (15 bp):
GAACAGAGCAAAACT
Found at i:10901913 original size:26 final size:24
Alignment explanation
Indices: 10901869--10901918 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
10901859 ATTTGTTTTA
*
10901869 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
10901893 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
10901919 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:10903242 original size:41 final size:41
Alignment explanation
Indices: 10903164--10903244 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
10903154 GCCGTGTAGC
* **
10903164 TCACACAACCTACCACACGGCCTGGTACACGGTCATGTGGT
1 TCACACAACCTACCACACGGCCTGGCACACGACCATGTGGT
* *
10903205 TCACACAACCTACCATACGGCCTGGCACATGACCATGTGG
1 TCACACAACCTACCACACGGCCTGGCACACGACCATGTGG
10903245 CATCGACAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.19
Consensus pattern (41 bp):
TCACACAACCTACCACACGGCCTGGCACACGACCATGTGGT
Found at i:10911801 original size:17 final size:19
Alignment explanation
Indices: 10911775--10911812 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10911765 AAAATTATTG
10911775 TTTTAGT-AAAT-ATTAAT
1 TTTTAGTAAAATGATTAAT
*
10911792 TTTTATTAAAATGATTAAT
1 TTTTAGTAAAATGATTAAT
10911811 TT
1 TT
10911813 AAGGTGATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTAGTAAAATGATTAAT
Found at i:10916347 original size:36 final size:36
Alignment explanation
Indices: 10916306--10916384 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
10916296 AAATAACCTC
*
10916306 TAGCCCACACCTATTACAAATCCAATACAACTAAAT
1 TAGCCCACACCTATTACAAACCCAATACAACTAAAT
10916342 TAGCCCACACCTATTACAAACCCAATACAACTAAAT
1 TAGCCCACACCTATTACAAACCCAATACAACTAAAT
10916378 TAGCCCA
1 TAGCCCA
10916385 AACAATACCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.43, C:0.33, G:0.04, T:0.20
Consensus pattern (36 bp):
TAGCCCACACCTATTACAAACCCAATACAACTAAAT
Found at i:10916850 original size:7 final size:7
Alignment explanation
Indices: 10916838--10916863 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10916828 AATATATATC
10916838 ATAAATA
1 ATAAATA
10916845 ATAAATA
1 ATAAATA
10916852 ATAAATA
1 ATAAATA
10916859 ATAAA
1 ATAAA
10916864 AAAATTCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
ATAAATA
Found at i:10917857 original size:18 final size:18
Alignment explanation
Indices: 10917836--10917870 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10917826 TATATTTCCC
*
10917836 TTATTTATTTTTTATTAG
1 TTATATATTTTTTATTAG
*
10917854 TTATATGTTTTTTATTA
1 TTATATATTTTTTATTA
10917871 TTTCATGTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
TTATATATTTTTTATTAG
Found at i:10917968 original size:24 final size:26
Alignment explanation
Indices: 10917923--10917970 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
10917913 TTAATACATG
10917923 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
10917949 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
10917971 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:10918048 original size:21 final size:20
Alignment explanation
Indices: 10918014--10918052 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
10918004 TTTTGTACTA
*
10918014 TATTATTTTATTAGTTTTGC
1 TATTATTGTATTAGTTTTGC
10918034 TATTATTAGTATTAGTTTT
1 TATTATT-GTATTAGTTTT
10918053 AGTTTCAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (20 bp):
TATTATTGTATTAGTTTTGC
Found at i:10930378 original size:47 final size:47
Alignment explanation
Indices: 10930327--10930703 Score: 504
Period size: 47 Copynumber: 7.7 Consensus size: 47
10930317 TTAGGATTCT
* * *
10930327 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
10930374 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
10930423 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
10930470 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
10930517 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-A------A--TG--GCCG
10930575 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
10930622 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
10930669 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
10930704 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 17, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 1 0.00
47 203 0.68
48 1 0.00
49 46 0.15
51 1 0.00
54 1 0.00
56 2 0.01
57 1 0.00
58 43 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:10930582 original size:58 final size:58
Alignment explanation
Indices: 10930513--10930629 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
10930503 AGGCCTAATG
10930513 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
10930571 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
10930629 G
1 G
10930630 AATGTGAAAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (58 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:10930607 original size:152 final size:152
Alignment explanation
Indices: 10930419--10930703 Score: 480
Period size: 152 Copynumber: 1.9 Consensus size: 152
10930409 AGGCCTAATG
10930419 GCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * * * *
10930484 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGAT
10930549 AAGGCCTAATGGCCGATGTGAT
131 AAGGCCTAATGGCCGATGTGAT
* *
10930571 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * *
10930636 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGAT
66 AAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGAT
10930701 AAG
131 AAG
10930704 TCCCGAAGGG
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
152 123 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (152 bp):
GCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGAT
AAGGCCTAATGGCCGATGTGAT
Found at i:10930667 original size:105 final size:105
Alignment explanation
Indices: 10930466--10930683 Score: 368
Period size: 105 Copynumber: 2.1 Consensus size: 105
10930456 AGGCCTAATA
10930466 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * *
10930531 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 AAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGAT
10930571 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
10930636 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
66 AAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGAT
10930676 G--GATGTGA
1 GCCGATGTGA
10930684 AAGTGTATAA
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 7 0.07
105 100 0.93
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.28
Consensus pattern (105 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGAT
Found at i:10930878 original size:37 final size:37
Alignment explanation
Indices: 10930822--10930900 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
10930812 CCGAGCTCTA
* * *
10930822 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
10930859 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
10930896 AAGAC
1 AAGAC
10930901 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:10934351 original size:86 final size:86
Alignment explanation
Indices: 10934235--10934626 Score: 416
Period size: 86 Copynumber: 4.5 Consensus size: 86
10934225 CACTTCTGTC
10934235 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTC-A
* * * *
10934300 AATTCTATCTTT-AGTTTTTACC
65 ATTTCT-TCTTTCAATTTATACT
* * * * * **
10934322 TTTC-CAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTTAGAGCACATTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAA
* * **
10934386 TTTCTGCTTTTCAATTTCTGTT
66 TTTCTTC-TTTCAATTTATACT
* * *
10934408 TTTCAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTCAGGACACGCTGAGGTATCTTC
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTC
* *
10934473 AATTTCCGTT-TTTCAAGTTATGCT
64 AATTT-C-TTCTTTCAATTTATACT
* * **
10934497 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAGGGCAC-CTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAA
*
10934561 TTTCTGTTTCTTTCAATTTATATT
66 TTTC---TTCTTTCAATTTATACT
*
10934585 TTTTAAAAATCAACTCATATTGC-ATGAGGTGAGTTGAGCCTC
1 TTTCAAAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTC
10934627 GGGTCACATG
Statistics
Matches: 254, Mismatches: 40, Indels: 21
0.81 0.13 0.07
Matches are distributed among these distances:
84 1 0.00
85 10 0.04
86 77 0.30
87 48 0.19
88 48 0.19
89 68 0.27
90 1 0.00
91 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAA
TTTCTTCTTTCAATTTATACT
Found at i:10934398 original size:14 final size:14
Alignment explanation
Indices: 10934379--10934413 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
10934369 CATTGAGGTA
10934379 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
*
10934393 TTTTCAATTTCTGT
1 TTTTCAATTTCTGC
10934407 TTTTCAA
1 TTTTCAA
10934414 AAAAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:10934441 original size:89 final size:89
Alignment explanation
Indices: 10934235--10934676 Score: 385
Period size: 89 Copynumber: 5.0 Consensus size: 89
10934225 CACTTCTGTC
* * *
10934235 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GAACACGCTGAGGTATTTTCA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGACACACTGAGGTATTTTC-
* * * ***
10934299 AAATTCT-A-TCTTT-AGTTTTTACC
65 AATTTCTGACT-TTTCAATTTATGTT
* * * * *
10934322 TTTC-CAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTTAGAG-CACATTGAGGTATTTTCA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGACACACTGAGGTATTTTCA
*
10934385 ATTTCTG-CTTTTCAATTTCTGTT
66 ATTTCTGACTTTTCAATTTATGTT
* * * *
10934408 TTTCAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTCA-GGACACGCTGAGGTATCTT
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGACACACTGAGGTATTTT
* * * *
10934472 CAATTTCCG-TTTTTCAAGTTATGCT
64 CAATTTCTGACTTTTCAATTTATGTT
*
10934497 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAA-CCTCAGGG-CAC-CTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAGGGACACACTGAGGTATTTTC
** *
10934559 AATTTCTGTTTCTTTCAATTTATATT
65 AATTTCTGACT-TTTCAATTTATGTT
* * *
10934585 TTTTAAAAATCAACTCATATTGC-ATGAGGTGAGTTGAGCCTC-GGGTCACA-TGCCAAGGTATT
1 TTTCAAAAATCAACTCATATTGCGA-GAGGTGAGTTAAGCCTCAGGGACACACTG---AGGTATT
* * *
10934647 TTCAAATTCTGAC-TTTCAAATTCTGTT
62 TTCAATTTCTGACTTTTCAATTTATGTT
10934674 TTT
1 TTT
10934677 AATTTCTACT
Statistics
Matches: 291, Mismatches: 45, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
85 9 0.03
86 78 0.27
87 48 0.16
88 55 0.19
89 84 0.29
91 17 0.06
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (89 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGACACACTGAGGTATTTTCA
ATTTCTGACTTTTCAATTTATGTT
Found at i:10934553 original size:175 final size:175
Alignment explanation
Indices: 10934239--10934626 Score: 484
Period size: 175 Copynumber: 2.2 Consensus size: 175
10934229 TCTGTCTTTC
*
10934239 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATCTTCAAAATT
* * * * *
10934304 CTATCTTTAGTTTTTACCTTTCCAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTTAGAGCA
66 CCATCTTTAGTTTATACCTTTCAAAATCAACTCATATTGCAAGAGATGAGTTAAGCCTCAGAGCA
* * *
10934369 CATTGAGGTATTTTCAATTTCTG-CT-TTTCAATTTCTGTTTTTCAA
131 CACTGAGGTATTTTCAATTTCTGTCTCTTTCAATTTATATTTTT--A
* * *
10934414 AAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTCAGGACACGCTGAGGTATCTTC-AATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATCTTCAAAATT
* * * * *
10934478 CCGTTTTTCAAG-TTATGCTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAA-CCTCAG
66 CCATCTTT--AGTTTATACCTTTC-AAAATCAACTCATATTGCAAGAGATGAGTT-AAGCCTCAG
* * *
10934541 GGCAC-CTGAGGTATTTTCAATTTCTGTTTCTTTCAATTTATATTTTTT
127 AGCACACTGAGGTATTTTCAATTTCTGTCTCTTTCAATTTATATTTTTA
10934589 AAAAATCAACTCATATTGC-ATGAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTC
10934627 GGGTCACATG
Statistics
Matches: 185, Mismatches: 21, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
174 10 0.05
175 119 0.64
176 39 0.21
177 17 0.09
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (175 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATCTTCAAAATT
CCATCTTTAGTTTATACCTTTCAAAATCAACTCATATTGCAAGAGATGAGTTAAGCCTCAGAGCA
CACTGAGGTATTTTCAATTTCTGTCTCTTTCAATTTATATTTTTA
Found at i:10936773 original size:15 final size:15
Alignment explanation
Indices: 10936753--10936781 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10936743 CTTTAATTTG
10936753 TTATTATTATTACTA
1 TTATTATTATTACTA
10936768 TTATTATTATTACT
1 TTATTATTATTACT
10936782 TCTAATGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATTATTATTACTA
Found at i:10937157 original size:18 final size:18
Alignment explanation
Indices: 10937136--10937170 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10937126 TATATTTCCC
*
10937136 TTATTTATTTTTTATTAG
1 TTATATATTTTTTATTAG
*
10937154 TTATATGTTTTTTATTA
1 TTATATATTTTTTATTA
10937171 TTTCATGTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
TTATATATTTTTTATTAG
Found at i:10937348 original size:21 final size:20
Alignment explanation
Indices: 10937314--10937352 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
10937304 TTTTGTACTA
*
10937314 TATTATTTTATTAGTTTTGC
1 TATTATTGTATTAGTTTTGC
10937334 TATTATTAGTATTAGTTTT
1 TATTATT-GTATTAGTTTT
10937353 AGTTTCAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (20 bp):
TATTATTGTATTAGTTTTGC
Found at i:10944891 original size:43 final size:43
Alignment explanation
Indices: 10944802--10944995 Score: 153
Period size: 43 Copynumber: 4.5 Consensus size: 43
10944792 ATGATGAGCT
* * * *
10944802 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACC
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATGTACAGATC
* * ** *
10944845 TTAAATCCCTAAGCAGTAGGGTAACAGGTTGAATGTATAGATC
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATGTACAGATC
* * * * *
10944888 TTAACCCCCTAAGTAGTAGGGAAAC-AGATCGAA-G-A-TGATGGGC
1 TTAAACCCCTAAGCAGTAGGGTAACAAG-CCGAATGTACAGAT---C
* * *
10944931 TTTAACCTCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATC
1 TTAAACC-CCTAAGCAGTAGGGTAACAAGCCGAATGTACAGATC
*
10944975 TTAAACCCCTAAGTAGTAGGG
1 TTAAACCCCTAAGCAGTAGGG
10944996 AAATAGATCG
Statistics
Matches: 116, Mismatches: 26, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 2 0.02
43 78 0.67
44 26 0.22
45 2 0.02
46 1 0.01
47 3 0.03
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (43 bp):
TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATGTACAGATC
Done.