Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 38 of 295
Found at i:11208871 original size:30 final size:30
Alignment explanation
Indices: 11208836--11208894 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
11208826 CTGAGCATTC
* *
11208836 CCACACGGGCTGGCCACACGCCCGTGTGAG
1 CCACACGAGCTGGCCACACGCCCATGTGAG
* *
11208866 CCACACGAGCTTGCTACACGCCCATGTGA
1 CCACACGAGCTGGCCACACGCCCATGTGA
11208895 CAACCCATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.20, C:0.39, G:0.27, T:0.14
Consensus pattern (30 bp):
CCACACGAGCTGGCCACACGCCCATGTGAG
Found at i:11213875 original size:13 final size:13
Alignment explanation
Indices: 11213868--11213901 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11213858 TTTTTTTGTT
11213868 TTTATTTTATTTA
1 TTTATTTTATTTA
*
11213881 TTTATTTTAGTTA
1 TTTATTTTATTTA
*
11213894 CTTATTTT
1 TTTATTTT
11213902 CTTGTTATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:11215723 original size:35 final size:35
Alignment explanation
Indices: 11215677--11215749 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
11215667 ACATCTTAAG
11215677 TGTGGGGAGGTTAATTATAGAAAATCCCTAAATTA
1 TGTGGGGAGGTTAATTATAGAAAATCCCTAAATTA
11215712 TGTGGGGAGGTTAATTATAGAAAATCCCTAAATTA
1 TGTGGGGAGGTTAATTATAGAAAATCCCTAAATTA
11215747 TGT
1 TGT
11215750 TTTGTATTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (35 bp):
TGTGGGGAGGTTAATTATAGAAAATCCCTAAATTA
Found at i:11219194 original size:34 final size:35
Alignment explanation
Indices: 11219151--11219228 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
11219141 AGACCATATC
* *
11219151 AGAATGTCATATTACCATAAACATATATTAGAT-A
1 AGAATGTCATATTACCAGAAACATATATCAGATCA
* *
11219185 AGAATGTCATATTTCTAGAAACATATATCAGATCA
1 AGAATGTCATATTACCAGAAACATATATCAGATCA
11219220 A-AATGTCAT
1 AGAATGTCAT
11219229 TTCAAATCAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 37 0.95
35 2 0.05
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (35 bp):
AGAATGTCATATTACCAGAAACATATATCAGATCA
Found at i:11219830 original size:49 final size:49
Alignment explanation
Indices: 11219777--11219876 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 49
11219767 CCGTATGTCT
** *
11219777 CACACGACCTATTTGATTTACCCGTGTAATCACACATGCCCATGTGCCC
1 CACACGACCTACCTGATTTACCCATGTAATCACACATGCCCATGTGCCC
* * * * *
11219826 CACACGGCCTACCTGATTTGCCCATGTAATCTCATATGTCCATGTGCCC
1 CACACGACCTACCTGATTTACCCATGTAATCACACATGCCCATGTGCCC
11219875 CA
1 CA
11219877 TACAGCCAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.23, C:0.35, G:0.15, T:0.27
Consensus pattern (49 bp):
CACACGACCTACCTGATTTACCCATGTAATCACACATGCCCATGTGCCC
Found at i:11219892 original size:49 final size:49
Alignment explanation
Indices: 11219789--11219933 Score: 137
Period size: 49 Copynumber: 2.9 Consensus size: 49
11219779 CACGACCTAT
* * * *
11219789 TTGATTTACCCGTGTAATCACACATGCCCATGTGCCCCACACGGCCTAC
1 TTGATTTACCCATGTAATCACACATGCCCATGTGCCCCACACAGCCAAA
* * * * * *
11219838 CTGATTTGCCCATGTAATCTCATATGTCCATGTGCCCCATACAGCCAAA
1 TTGATTTACCCATGTAATCACACATGCCCATGTGCCCCACACAGCCAAA
* ** * * *
11219887 TTGATTTATCCACATAATCACACACGGCCGTGTGCCCTCACACAGCC
1 TTGATTTACCCATGTAATCACACATGCCCATGTGCCC-CACACAGCC
11219934 GTGTGAAAAA
Statistics
Matches: 74, Mismatches: 21, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
49 66 0.89
50 8 0.11
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (49 bp):
TTGATTTACCCATGTAATCACACATGCCCATGTGCCCCACACAGCCAAA
Found at i:11221207 original size:91 final size:90
Alignment explanation
Indices: 11221049--11221241 Score: 289
Period size: 91 Copynumber: 2.1 Consensus size: 90
11221039 GGATGTGACA
* * * * * *
11221049 GGTGGTTCATCCACAAATTTTCTGGTAGCTCTTATCTGCAAATACGTTGTGCATTCACAACCTTC
1 GGTGGTTCATCCAAAAATATTCTGGCAACTCTTATCTACAAAAACGTTGTGCATTCACAACCTTC
*
11221114 TGGCAGCGTAATAACCTACAACTTT
66 TGGCAGCGTAATAACCTACAACTCT
*
11221139 GGTGGTTCATCCAAAAATATTCTGGCAACTTTTATCTACAAAAAACGTTGTGCATTCACAACCTT
1 GGTGGTTCATCCAAAAATATTCTGGCAACTCTTATCTAC-AAAAACGTTGTGCATTCACAACCTT
*
11221204 CTGGCAGCGTAATAACCTGCAACTCT
65 CTGGCAGCGTAATAACCTACAACTCT
11221230 GGT-GTTCATCCA
1 GGTGGTTCATCCA
11221242 CAACACAGTG
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 42 0.45
91 51 0.55
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (90 bp):
GGTGGTTCATCCAAAAATATTCTGGCAACTCTTATCTACAAAAACGTTGTGCATTCACAACCTTC
TGGCAGCGTAATAACCTACAACTCT
Found at i:11224008 original size:55 final size:54
Alignment explanation
Indices: 11223893--11224197 Score: 252
Period size: 55 Copynumber: 5.7 Consensus size: 54
11223883 GTTGTGTGAT
11223893 GGCCATTGACAGGCCAGCACCAAAAAAATTTAATTTTTTT----T-GTACTTGGTGCC
1 GGCCATTGACAGGCCAGCACC--AAAAATTT--TTTTTTTAAACTCGTACTTGGTGCC
* * *
11223946 GGCCATTGATAAGCCAGCACCAAAAACTTTTTTTTTAAACTCGTACTCTGGTGCC
1 GGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTTAAACTCGTACT-TGGTGCC
* * * * *
11224001 GGTCATTGACAAGG-CAGCATCAAAAAAATTTGATTTTTTT---TTTGTATTTGGTGCC
1 GGCCATTGAC-AGGCCAGCA-C-CAAAAATTT--TTTTTTTAAACTCGTACTTGGTGCC
*
11224056 AGCCATTGACAGGCCAGCACC--AAA-TTTTTTTTT----T-GTACTTGGTGCC
1 GGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTTAAACTCGTACTTGGTGCC
11224102 GGCCATTGACAGGCCAGCACCAAAAAAATTTTTTTTTTAGAAACTCGTACTCTGGTGCC
1 GGCCATTGACAGGCCAGCACC--AAAAATTTTTTTTTT--AAACTCGTACT-TGGTGCC
*
11224161 GGCCATTGATAGGCCAGCACC--AAATTTTTTTTTTAAA
1 GGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTTAAA
11224198 TACTGATATT
Statistics
Matches: 210, Mismatches: 17, Indels: 50
0.76 0.06 0.18
Matches are distributed among these distances:
46 31 0.15
47 1 0.00
48 7 0.03
49 7 0.03
50 5 0.02
51 19 0.09
53 23 0.11
54 9 0.04
55 53 0.25
56 8 0.04
57 8 0.04
58 5 0.02
59 34 0.16
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (54 bp):
GGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTTAAACTCGTACTTGGTGCC
Found at i:11224186 original size:105 final size:100
Alignment explanation
Indices: 11223893--11224194 Score: 342
Period size: 105 Copynumber: 2.9 Consensus size: 100
11223883 GTTGTGTGAT
*
11223893 GGCCATTGACAGGCCAGCACCAAAAAAATTTAATTTTTTTTGTACTTGGTGCCGGCCATTGATAA
1 GGCCATTGACAGGCCAGCACCAAAAAAATTT-ATTTTTTTTGTACTTGGTGCCGGCCATTGATAG
11223958 GCCAGCACCAAAAACTTTTTTTTTAAACTCGTACTCTGGTGCC
65 GCCAGCACC--AAA-TTTTTTTTT----TCGTACTCTGGTGCC
* * * *
11224001 GGTCATTGACAAGG-CAGCATCAAAAAAATTTGATTTTTTTTTTGTATTTGGTGCCAGCCATTGA
1 GGCCATTGAC-AGGCCAGCACCAAAAAAATTT-A--TTTTTTTTGTACTTGGTGCCGGCCATTGA
*
11224065 CAGGCCAGCACCAAATTTTTTTTTT-GTACT-TGGTGCC
62 TAGGCCAGCACCAAATTTTTTTTTTCGTACTCTGGTGCC
11224102 GGCCATTGACAGGCCAGCACCAAAAAAATTT-TTTTTTTAGAAACTCGTACTCTGGTGCCGGCCA
1 GGCCATTGACAGGCCAGCACCAAAAAAATTTATTTTTTT------T-GTACT-TGGTGCCGGCCA
11224166 TTGATAGGCCAGCACCAAATTTTTTTTTT
58 TTGATAGGCCAGCACCAAATTTTTTTTTT
11224195 AAATACTGAT
Statistics
Matches: 170, Mismatches: 12, Indels: 27
0.81 0.06 0.13
Matches are distributed among these distances:
97 7 0.04
100 3 0.02
101 32 0.19
102 5 0.03
103 2 0.01
104 4 0.02
105 39 0.23
107 9 0.05
108 29 0.17
109 3 0.02
110 37 0.22
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (100 bp):
GGCCATTGACAGGCCAGCACCAAAAAAATTTATTTTTTTTGTACTTGGTGCCGGCCATTGATAGG
CCAGCACCAAATTTTTTTTTTCGTACTCTGGTGCC
Found at i:11224186 original size:156 final size:155
Alignment explanation
Indices: 11223894--11224194 Score: 389
Period size: 156 Copynumber: 1.9 Consensus size: 155
11223884 TTGTGTGATG
*
11223894 GCCATTGACAGGCCAGCACCAAAAAAATTTAATTTTTTTTGTACTTGGTGCCGGCCATTGATAAG
1 GCCATTGACAGGCCAGCACC---AAAATTT-ATTTTTTTTGTACTTGGTGCCGGCCATTGACAAG
*
11223959 CCAGCACCAAAAACTTTTTTTTTAAACTCGTACTCTGGTGCCGGTCATTGACAAGGCAGCATCAA
62 CCAGCACCAAAAACTTTTTTTTTAAACTCGTACTCTGGTGCCGGCCATTGACAAGGCAGCATC--
11224024 AAAAATTTGATTTTTTTTTTGTATTTGGTGCCA
125 AAAAATTT--TTTTTTTTTTGTATTTGGTGCCA
*
11224057 GCCATTGACAGGCCAGCACC-AAA-TT-TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAG
1 GCCATTGACAGGCCAGCACCAAAATTTATTTTTTTTGTACTTGGTGCCGGCCATTGACAAGCCAG
* *
11224119 CACCAAAAAAATTTTTTTTTTAGAAACTCGTACTCTGGTGCCGGCCATTGA-TAGGCCAGCA-C-
66 CACC--AAAAACTTTTTTTTT--AAACTCGTACTCTGGTGCCGGCCATTGACAAGG-CAGCATCA
*
11224181 CAAATTTTTTTTTT
126 AAAATTTTTTTTTT
11224195 AAATACTGAT
Statistics
Matches: 127, Mismatches: 6, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
154 7 0.06
156 45 0.35
158 16 0.13
159 7 0.06
160 32 0.25
163 20 0.16
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (155 bp):
GCCATTGACAGGCCAGCACCAAAATTTATTTTTTTTGTACTTGGTGCCGGCCATTGACAAGCCAG
CACCAAAAACTTTTTTTTTAAACTCGTACTCTGGTGCCGGCCATTGACAAGGCAGCATCAAAAAT
TTTTTTTTTTTTGTATTTGGTGCCA
Found at i:11225711 original size:77 final size:79
Alignment explanation
Indices: 11225617--11225775 Score: 250
Period size: 77 Copynumber: 2.0 Consensus size: 79
11225607 CCACCAAATG
* * * *
11225617 TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTC-ATCGGCAATCAATGT
1 TGACGGAACTACTTGAGAACGCCATTTGACTCGATTCATTACTGCTTTCGATCGGCAATCAATGT
11225681 GTTTTGGCTATT-T
66 GTTTTGGCTATTCT
* *
11225694 TGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATTGGCAATCAATGT
1 TGACGGAACTACTTGAGAACGCCATTTGACTCGATTCATTACTGCTTTCGATCGGCAATCAATGT
11225759 GTTTTGGCTATTCT
66 GTTTTGGCTATTCT
11225773 TGA
1 TGA
11225776 TATTAAGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
77 44 0.59
78 26 0.35
79 4 0.05
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (79 bp):
TGACGGAACTACTTGAGAACGCCATTTGACTCGATTCATTACTGCTTTCGATCGGCAATCAATGT
GTTTTGGCTATTCT
Found at i:11225988 original size:77 final size:79
Alignment explanation
Indices: 11225894--11226052 Score: 250
Period size: 77 Copynumber: 2.0 Consensus size: 79
11225884 CCACCAAATG
* * * *
11225894 TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTC-ATCGGCAATCAATGT
1 TGACGGAACTACTTGAGAACGCCATTTGACTCGATTCATTACTGCTTTCGATCGGCAATCAATGT
11225958 GTTTTGGCTATT-T
66 GTTTTGGCTATTCT
* *
11225971 TGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATTGGCAATCAATGT
1 TGACGGAACTACTTGAGAACGCCATTTGACTCGATTCATTACTGCTTTCGATCGGCAATCAATGT
11226036 GTTTTGGCTATTCT
66 GTTTTGGCTATTCT
11226050 TGA
1 TGA
11226053 TATTAAGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
77 44 0.59
78 26 0.35
79 4 0.05
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (79 bp):
TGACGGAACTACTTGAGAACGCCATTTGACTCGATTCATTACTGCTTTCGATCGGCAATCAATGT
GTTTTGGCTATTCT
Found at i:11226046 original size:277 final size:277
Alignment explanation
Indices: 11225552--11226106 Score: 1110
Period size: 277 Copynumber: 2.0 Consensus size: 277
11225542 CAGACATAGT
11225552 TGTGAACTTGTGATGACTTTGAAGCACTCATAGGCAACATAATCTGTGTTTTCAACCACCAAATG
1 TGTGAACTTGTGATGACTTTGAAGCACTCATAGGCAACATAATCTGTGTTTTCAACCACCAAATG
11225617 TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTCATCGGCAATCAATGTG
66 TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTCATCGGCAATCAATGTG
11225682 TTTTGGCTATTTTGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATT
131 TTTTGGCTATTTTGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATT
11225747 GGCAATCAATGTGTTTTGGCTATTCTTGATATTAAGGTTGGTGTAATTCATCAACCTAATCTGAA
196 GGCAATCAATGTGTTTTGGCTATTCTTGATATTAAGGTTGGTGTAATTCATCAACCTAATCTGAA
11225812 TTAAATTATTATAGAGA
261 TTAAATTATTATAGAGA
11225829 TGTGAACTTGTGATGACTTTGAAGCACTCATAGGCAACATAATCTGTGTTTTCAACCACCAAATG
1 TGTGAACTTGTGATGACTTTGAAGCACTCATAGGCAACATAATCTGTGTTTTCAACCACCAAATG
11225894 TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTCATCGGCAATCAATGTG
66 TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTCATCGGCAATCAATGTG
11225959 TTTTGGCTATTTTGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATT
131 TTTTGGCTATTTTGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATT
11226024 GGCAATCAATGTGTTTTGGCTATTCTTGATATTAAGGTTGGTGTAATTCATCAACCTAATCTGAA
196 GGCAATCAATGTGTTTTGGCTATTCTTGATATTAAGGTTGGTGTAATTCATCAACCTAATCTGAA
11226089 TTAAATTATTATAGAGA
261 TTAAATTATTATAGAGA
11226106 T
1 T
11226107 TTTATTTATT
Statistics
Matches: 278, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
277 278 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (277 bp):
TGTGAACTTGTGATGACTTTGAAGCACTCATAGGCAACATAATCTGTGTTTTCAACCACCAAATG
TGACGGAATTATTTGAGAACGTCATTTGACTCGATTCGTTACTGCTTTCATCGGCAATCAATGTG
TTTTGGCTATTTTGACGGAACTACTTGAGAGCGCCATTTGACTCGATTCATTACTGCTTTCGATT
GGCAATCAATGTGTTTTGGCTATTCTTGATATTAAGGTTGGTGTAATTCATCAACCTAATCTGAA
TTAAATTATTATAGAGA
Found at i:11229735 original size:22 final size:21
Alignment explanation
Indices: 11229675--11229736 Score: 52
Period size: 26 Copynumber: 2.7 Consensus size: 21
11229665 CTTTAATTCT
*
11229675 TTATTTTTATAATATTATTAA
1 TTATTTTAATAATATTATTAA
*
11229696 TTAATTTAAATAGTTAATATTATTAA
1 TT-ATTT---TA-ATAATATTATTAA
11229722 TTATTTTAACTAATA
1 TTATTTTAA-TAATA
11229737 ATTTGATGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 11
0.70 0.07 0.24
Matches are distributed among these distances:
21 2 0.06
22 11 0.34
25 5 0.16
26 14 0.44
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTATTTTAATAATATTATTAA
Found at i:11230742 original size:19 final size:20
Alignment explanation
Indices: 11230718--11230760 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
11230708 TTTCAATTTA
* *
11230718 AAAATA-AATAAAAAGTTAC
1 AAAATACAAAAAAAAATTAC
11230737 AAAATACAAAAAAAAATTAC
1 AAAATACAAAAAAAAATTAC
11230757 AAAA
1 AAAA
11230761 GAGAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAATACAAAAAAAAATTAC
Found at i:11241297 original size:71 final size:72
Alignment explanation
Indices: 11241209--11241342 Score: 225
Period size: 72 Copynumber: 1.9 Consensus size: 72
11241199 TAAGGACTTT
*
11241209 TGGACTTTTGACCTGACTTATATATTTTTG-GACTCATTTATTATGTGTTTTACAACCCAATTAC
1 TGGACTTTTGACCTGACTTATATATTTTTGAAACTCATTTATTATGTGTTTTACAACCCAATTAC
11241273 TTAAGTG
66 TTAAGTG
* * *
11241280 TGGACTTTTGACTTGACTTATTTATTTTTGAAACTCATTTATTATGTTTTTTACAACCCAATT
1 TGGACTTTTGACCTGACTTATATATTTTTGAAACTCATTTATTATGTGTTTTACAACCCAATT
11241343 GAGTAATTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
71 28 0.48
72 30 0.52
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (72 bp):
TGGACTTTTGACCTGACTTATATATTTTTGAAACTCATTTATTATGTGTTTTACAACCCAATTAC
TTAAGTG
Found at i:11241911 original size:68 final size:67
Alignment explanation
Indices: 11241816--11241943 Score: 202
Period size: 68 Copynumber: 1.9 Consensus size: 67
11241806 AGACTTAAGT
* *
11241816 GTGGACTTTTGACCTGATTTATATATTTTTGGACTCATTTATTATGTGTTTTACAACCCAAGCTG
1 GTGGACTTTTGACCTGACTTATATATTTTTGAACTCATTTATTATGT-TTTTACAACCCAAGCTG
11241881 AGA
65 AGA
* * *
11241884 GTGGAGTTTTGACCTGACTTATTTATTTTTGAACTCATTTATTATGTTTTTACGACCCAA
1 GTGGACTTTTGACCTGACTTATATATTTTTGAACTCATTTATTATGTTTTTACAACCCAA
11241944 TTGAATAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
67 12 0.22
68 43 0.78
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (67 bp):
GTGGACTTTTGACCTGACTTATATATTTTTGAACTCATTTATTATGTTTTTACAACCCAAGCTGA
GA
Found at i:11248572 original size:35 final size:35
Alignment explanation
Indices: 11248526--11248593 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
11248516 GTTGATTATA
* * *
11248526 TCATCACATATGGCCGAATATACATGTTCAATATG
1 TCATCACATATGACCGAATATACAAGTTAAATATG
*
11248561 TCATCATATATGACCGAATATACAAGTTAAATA
1 TCATCACATATGACCGAATATACAAGTTAAATA
11248594 GAACATCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.31
Consensus pattern (35 bp):
TCATCACATATGACCGAATATACAAGTTAAATATG
Found at i:11248601 original size:35 final size:35
Alignment explanation
Indices: 11248527--11248602 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
11248517 TTGATTATAT
* * * *
11248527 CATCACATATGGCCGAATATACATGTTCAATATGT
1 CATCACATATGACCGAATATACAAGTTAAATATGA
*
11248562 CATCATATATGACCGAATATACAAGTTAAATA-GAA
1 CATCACATATGACCGAATATACAAGTTAAATATG-A
11248597 CATCAC
1 CATCAC
11248603 TTATAGCCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (35 bp):
CATCACATATGACCGAATATACAAGTTAAATATGA
Found at i:11249527 original size:15 final size:15
Alignment explanation
Indices: 11249504--11249533 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11249494 TTAAAAACTC
11249504 TAATACAAAACATAT
1 TAATACAAAACATAT
*
11249519 TAATCCAAAACATAT
1 TAATACAAAACATAT
11249534 CTGTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:11263712 original size:40 final size:40
Alignment explanation
Indices: 11263630--11263726 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
11263620 TCATCTCCGT
* * ** *
11263630 CCAACCCAACACACCACG--TGGGGATAAAATTGACCTAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
* *
11263668 CCAACCTTACACACCAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
11263708 CCAACCCTACACACCAAGT
1 CCAACCCTACACACCAAGT
11263727 GGTACCATAT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 15 0.31
40 34 0.69
ACGTcount: A:0.38, C:0.35, G:0.12, T:0.14
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAC
Found at i:11266139 original size:11 final size:11
Alignment explanation
Indices: 11266123--11266164 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
11266113 TAGCTATTTA
11266123 TAATAAAATAT
1 TAATAAAATAT
11266134 TAATAAAATAT
1 TAATAAAATAT
*
11266145 CTCATTAAAATAT
1 -T-AATAAAATAT
11266158 TAATAAA
1 TAATAAA
11266165 GTAATATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.59
12 2 0.07
13 9 0.33
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:11276528 original size:20 final size:20
Alignment explanation
Indices: 11276503--11276540 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
11276493 GCCTCACGGG
11276503 CAGGCCACACGGCCATGTCC
1 CAGGCCACACGGCCATGTCC
*
11276523 CAGGCCACACGGGCATGT
1 CAGGCCACACGGCCATGT
11276541 GCCCCTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.39, G:0.29, T:0.11
Consensus pattern (20 bp):
CAGGCCACACGGCCATGTCC
Found at i:11281923 original size:3 final size:3
Alignment explanation
Indices: 11281894--11281964 Score: 97
Period size: 3 Copynumber: 23.3 Consensus size: 3
11281884 AGATATTTAC
* * *
11281894 TTA TTA TTTA TAA TTA TTG TCA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
11281940 TTA TTA TTA TTA TCA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
11281965 AATTTACAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
3 56 0.95
4 3 0.05
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:11289895 original size:10 final size:10
Alignment explanation
Indices: 11289873--11289924 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
11289863 AAATCTGTCG
*
11289873 AAAA-TAATA
1 AAAATTAATT
*
11289882 AAAATTAATC
1 AAAATTAATT
11289892 AAAATTAATTAT
1 AAAATTAA-T-T
11289904 AAAATTAATT
1 AAAATTAATT
*
11289914 AAAATTCATT
1 AAAATTAATT
11289924 A
1 A
11289925 TGTTAATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.62
11 2 0.05
12 8 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:11289909 original size:22 final size:22
Alignment explanation
Indices: 11289882--11289925 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
11289872 GAAAATAATA
11289882 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
* *
11289904 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTAATTAT
11289926 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:11294385 original size:16 final size:15
Alignment explanation
Indices: 11294341--11294409 Score: 61
Period size: 15 Copynumber: 4.5 Consensus size: 15
11294331 CTTTGTTCTT
11294341 TTTCTTTGTTTTTTC
1 TTTCTTTGTTTTTTC
*
11294356 TTTCTTTCGTTTTTTGT
1 TTTCTTT-GTTTTTT-C
11294373 TTATCTTTGTTTTTT-
1 TT-TCTTTGTTTTTTC
*
11294388 TTT-TTATGTTTATTC
1 TTTCTT-TGTTTTTTC
*
11294403 ATTCTTT
1 TTTCTTT
11294410 TTCCTTTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 2 0.04
14 8 0.18
15 12 0.27
16 9 0.20
17 9 0.20
18 5 0.11
ACGTcount: A:0.06, C:0.10, G:0.07, T:0.77
Consensus pattern (15 bp):
TTTCTTTGTTTTTTC
Found at i:11295256 original size:49 final size:49
Alignment explanation
Indices: 11295119--11295266 Score: 162
Period size: 49 Copynumber: 3.0 Consensus size: 49
11295109 TTTTCTCAGA
**
11295119 TTAAACTTACTTATTTTATTTATTTTTAAATC-TCTCATATATTATTTATT
1 TTAAACTTACTTATTTTATTTAGCTTTAAATCTTC-CATAT-TTATTTATT
** * *
11295169 TTAAACTTGTTTATTTTA--TAGCTTTAAGTCCTTTCATATGTTATTTATT
1 TTAAACTTACTTATTTTATTTAGCTTTAAAT-CTTCCATAT-TTATTTATT
*
11295218 TTAAACTTACTTATTTTATTTA-CTATAAATCTTCCATA-TTATTTATT
1 TTAAACTTACTTATTTTATTTAGCTTTAAATCTTCCATATTTATTTATT
11295265 TT
1 TT
11295267 GAACAGTTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
47 11 0.13
48 8 0.10
49 38 0.46
50 23 0.28
51 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.58
Consensus pattern (49 bp):
TTAAACTTACTTATTTTATTTAGCTTTAAATCTTCCATATTTATTTATT
Found at i:11295282 original size:99 final size:99
Alignment explanation
Indices: 11295119--11295321 Score: 238
Period size: 99 Copynumber: 2.1 Consensus size: 99
11295109 TTTTCTCAGA
* * *
11295119 TTAAACTTACTTATTTTATTTATTTTTAAATCTCTCATATATTATTTATTTTAAACTTGTTTATT
1 TTAAACTTACTTATTTTATTTATCTATAAATCTCTCACATATTATTTATTTTAAACTTGTTTATT
11295184 -TTATAGCTTTAAG-TCCTTTCATAT-GTTATTTATT
66 ATT-TA-CTTTAAGTTCCTTTCATATAG-TATTTATT
* *
11295218 TTAAACTTACTTATTTTATTTA-CTATAAATCT-TC-CATATTATTTATTTTGAACAGTTTTATT
1 TTAAACTTACTTATTTTATTTATCTATAAATCTCTCACATATTATTTATTTT-AA-ACTTGT-TT
* **
11295280 ATTATTTATTTTAAGTTTTTTTCATATAGTATTTATT
63 ATTATTTACTTTAAGTTCCTTTCATATAGTATTTATT
11295317 TTAAA
1 TTAAA
11295322 TTGTTTTATC
Statistics
Matches: 90, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
96 14 0.16
97 4 0.04
98 18 0.20
99 51 0.57
100 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (99 bp):
TTAAACTTACTTATTTTATTTATCTATAAATCTCTCACATATTATTTATTTTAAACTTGTTTATT
ATTTACTTTAAGTTCCTTTCATATAGTATTTATT
Found at i:11295373 original size:24 final size:24
Alignment explanation
Indices: 11295134--11295628 Score: 244
Period size: 26 Copynumber: 19.5 Consensus size: 24
11295124 CTTACTTATT
* *
11295134 TTATTTATTTTTAAATCTCTCATATA
1 TTATTTA-TTTTAAAT-TTTTATATA
11295160 TTATTTATTTTAAACTTGTTTAT-T-
1 TTATTTATTTTAAA-TT-TTTATATA
* * * *
11295184 TTA--TAGCTTTAAGTCCTTTCATATG
1 TTATTTA-TTTTAAAT--TTTTATATA
*
11295209 TTATTTATTTTAAACTTACTTAT-T-
1 TTATTTATTTTAAA-TT-TTTATATA
* * * **
11295233 TTATTTACTATAAA-TCTTCCATA
1 TTATTTATTTTAAATTTTTATATA
*
11295256 TTATTTATTTTGAACAGTTTTAT-TA
1 TTATTTATTTT-AA-ATTTTTATATA
*
11295281 TTATTTATTTTAAGTTTTTTTCATATA
1 TTATTTATTTTAA--ATTTTT-ATATA
*
11295308 GTATTTATTTTAAATTGTTTTATCATA
1 TTATTTATTTTAAA-T-TTTTAT-ATA
* *
11295335 TTATTTATTTT-AATTTATTTTGTA
1 TTATTTATTTTAAATTT-TTATATA
11295359 TTA-TTATTTTAAATTGTTTATATA
1 TTATTTATTTTAAATT-TTTATATA
* *
11295383 TTATTTACTTTAAATTTCTTTATAAA
1 TTATTTATTTTAAA-TT-TTTATATA
* * *
11295409 CTATTTATTTCAAATTGTTTTATATT
1 TTATTTATTTTAAA-T-TTTTATATA
*
11295435 TTATTTATGTTAAAATTTATGTATATA
1 TTATTTAT-TTTAAATTT-T-TATATA
* * *
11295462 TTGTCTATTCTGAACCA-TTTTATATA
1 TTATTTATT-TTAA--ATTTTTATATA
* *
11295488 TTACTTATTTTAATTTTTTTTCATATA
1 TTATTTATTTTAA--ATTTTT-ATATA
*
11295515 TTTTTTATTTTAAACTTTTTATATA
1 TTATTTATTTTAAA-TTTTTATATA
* *
11295540 TTTTTTACTTTAAATTGTTTCAT-TAA
1 TTATTTATTTTAAATT-TTT-ATAT-A
11295566 TTATTTATTTTAAAACTTTTT-TATA
1 TTATTTATTTT-AAA-TTTTTATATA
*
11295591 TTATTTATTTTTAAATTTATATATA
1 TTATTTA-TTTTAAATTTTTATATA
11295616 -TATATTATTTTAA
1 TTAT-TTATTTTAA
11295629 TTCATTTGTC
Statistics
Matches: 367, Mismatches: 56, Indels: 94
0.71 0.11 0.18
Matches are distributed among these distances:
21 3 0.01
22 5 0.01
23 25 0.07
24 55 0.15
25 92 0.25
26 105 0.29
27 77 0.21
28 4 0.01
29 1 0.00
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (24 bp):
TTATTTATTTTAAATTTTTATATA
Found at i:11295439 original size:26 final size:26
Alignment explanation
Indices: 11295253--11295628 Score: 269
Period size: 26 Copynumber: 14.6 Consensus size: 26
11295243 TAAATCTTCC
* **
11295253 ATATTATTTATTTTGAACAGTTTTAT
1 ATATTATTTATTTTAAATTGTTTTAT
* *
11295279 -TATTATTTATTTTAAGTTTTTTTCAT
1 ATATTATTTATTTTAAATTGTTTT-AT
*
11295305 ATAGTATTTATTTTAAATTGTTTTAT
1 ATATTATTTATTTTAAATTGTTTTAT
11295331 CATATTATTTATTTT-AATT-TATTT-T
1 -ATATTATTTATTTTAAATTGT-TTTAT
*
11295356 GTATTA-TTATTTTAAATTG-TTTAT
1 ATATTATTTATTTTAAATTGTTTTAT
*
11295380 ATATTATTTACTTTAAATT-TCTTTAT
1 ATATTATTTATTTTAAATTGT-TTTAT
* * *
11295406 AAACTATTTATTTCAAATTGTTTTAT
1 ATATTATTTATTTTAAATTGTTTTAT
* * *
11295432 ATTTTATTTATGTTAAAATT-TATGTAT
1 ATATTATTTAT-TTTAAATTGT-TTTAT
* * * * ***
11295459 ATATTGTCTATTCTGAACCATTTTAT
1 ATATTATTTATTTTAAATTGTTTTAT
* * *
11295485 ATATTACTTATTTTAATTTTTTTTCAT
1 ATATTATTTATTTTAAATTGTTTT-AT
* *
11295512 ATATTTTTTATTTTAAACT-TTTTAT
1 ATATTATTTATTTTAAATTGTTTTAT
* * *
11295537 ATATTTTTTACTTTAAATTGTTTCAT
1 ATATTATTTATTTTAAATTGTTTTAT
*
11295563 -TAATTATTTATTTTAAAACT-TTTT-T
1 AT-ATTATTTATTTT-AAATTGTTTTAT
*
11295588 ATATTATTTATTTTTAAA-T-TTATAT
1 ATATTATTTA-TTTTAAATTGTTTTAT
11295613 ATA-TATATTATTTTAA
1 ATATTAT-TTATTTTAA
11295629 TTCATTTGTC
Statistics
Matches: 277, Mismatches: 51, Indels: 46
0.74 0.14 0.12
Matches are distributed among these distances:
23 10 0.04
24 28 0.10
25 70 0.25
26 94 0.34
27 75 0.27
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (26 bp):
ATATTATTTATTTTAAATTGTTTTAT
Found at i:11295533 original size:25 final size:24
Alignment explanation
Indices: 11295505--11295628 Score: 99
Period size: 25 Copynumber: 4.9 Consensus size: 24
11295495 TTTTAATTTT
11295505 TTTTCATATATTTTTTATTTTAAAC
1 TTTT-ATATATTTTTTATTTTAAAC
* *
11295530 TTTTTATATATTTTTTACTTTAAAT
1 -TTTTATATATTTTTTATTTTAAAC
*
11295555 TGTTTCAT-TAATTATTTATTTTAAAAC
1 T-TTT-ATAT-ATTTTTTATTTT-AAAC
* *
11295582 TTTTTTATATTATTTATTTTTAAA-
1 TTTTATATATTTTTTA-TTTTAAAC
* *
11295606 TTTATATATATATATTATTTTAA
1 TTT-TATATATTTTTTATTTTAA
11295629 TTCATTTGTC
Statistics
Matches: 81, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
24 10 0.12
25 43 0.53
26 24 0.30
27 4 0.05
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (24 bp):
TTTTATATATTTTTTATTTTAAAC
Found at i:11295538 original size:157 final size:153
Alignment explanation
Indices: 11295325--11295618 Score: 364
Period size: 157 Copynumber: 1.9 Consensus size: 153
11295315 TTTTAAATTG
* *
11295325 TTTTATCATATTATTTATTTTAATTTATTTTGTATTATTATTTTAAATTGTTTATATATTATTTA
1 TTTTATCATATTACTTATTTTAATTTATTTTATATTATTATTTTAAATTGTTTATATATTATTTA
* *
11295390 CTTTAAATT-TCTTTATAAACTATTTA-TTTCAAA-TTGTTTTATATTTTATTTATGTTAAAATT
66 CTTTAAATTGT-TTCATAAACTATTTATTTTAAAACTT-TTTTATA--TTATTTATGTTAAAATT
*
11295452 TATGTATATATTGTCTATTCTGAACCA
127 TATATATATATTGTCTATTCTGAACCA
* *
11295479 TTTTAT-ATATTACTTATTTTAATTTTTTTTCATATATTTTTTATTTTAAACTT-TTTATATATT
1 TTTTATCATATTACTTATTTTAA-TTTATTT--TATA-TTATTATTTTAAA-TTGTTTATATATT
* * * * *
11295542 TTTTACTTTAAATTGTTTCATTAATTATTTATTTTAAAACTTTTTTATATTATTTATTTTTAAAT
61 ATTTACTTTAAATTGTTTCATAAACTATTTATTTTAAAACTTTTTTATATTATTTATGTTAAAAT
11295607 TTATATATATAT
126 TTATATATATAT
11295619 ATTATTTTAA
Statistics
Matches: 120, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
153 15 0.12
154 12 0.10
156 28 0.23
157 47 0.39
158 16 0.13
159 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (153 bp):
TTTTATCATATTACTTATTTTAATTTATTTTATATTATTATTTTAAATTGTTTATATATTATTTA
CTTTAAATTGTTTCATAAACTATTTATTTTAAAACTTTTTTATATTATTTATGTTAAAATTTATA
TATATATTGTCTATTCTGAACCA
Found at i:11295606 original size:52 final size:50
Alignment explanation
Indices: 11295119--11295628 Score: 255
Period size: 51 Copynumber: 10.1 Consensus size: 50
11295109 TTTTCTCAGA
** * * *
11295119 TTAAACTTACTTATTTTATTTATTTTTAAA-TCTCTCATATATTATTTATT
1 TTAAACTTTTTTATATTATTTA-TTTTAAATTGTTTCATATATTATTTATT
* * * * ** *
11295169 TTAAACTTGTTTAT-TT-TATAGCTTTAAGTCCTTTCATATGTTATTTATT
1 TTAAACTTTTTTATATTATTTA-TTTTAAATTGTTTCATATATTATTTATT
** * * * * *
11295218 TTAAACTTACTTATTTTATTTACTATAAA-T-CTTC-CATATTATTTATT
1 TTAAACTTTTTTATATTATTTATTTTAAATTGTTTCATATATTATTTATT
* ** * * *
11295265 TTGAACAGTTTTATTATTATTTATTTTAAGTTTTTTTCATATAGTATTTATT
1 TTAAACTTTTTTA-TATTATTTATTTTAA-ATTGTTTCATATATTATTTATT
* * * *
11295317 TTAAATTGTTTTATCATATTATTTATTTTAATTTATTT--TGTATTA-TTATT
1 TTAAACT-TTTT-T-ATATTATTTATTTTAAATTGTTTCATATATTATTTATT
* * * *
11295367 TTAAA-TTGTTTATATATTATTTACTTTAAATT-TCTTTATAAACTATTTATT
1 TTAAACTT-TTT-TATATTATTTATTTTAAATTGT-TTCATATATTATTTATT
* * * *
11295418 TCAAA-TTGTTTTATATTTTATTTATGTTAAAATT-TATGT-ATATATTGTCTATT
1 TTAAACTT-TTTTATA--TTATTTAT-TTTAAATTGT-T-TCATATATTATTTATT
* * * * * * *
11295471 CTGAACCATTTTATATATTACTTATTTTAATTTTTTTTCATATATTTTTTATT
1 -TTAAAC-TTTTTTATATTATTTATTTTAA-ATTGTTTCATATATTATTTATT
* *
11295524 TTAAACTTTTTATATATTTTTTACTTTAAATTGTTTCAT-TAATTATTTATT
1 TTAAACTTTTT-TATATTATTTATTTTAAATTGTTTCATAT-ATTATTTATT
*
11295575 TTAAAACTTTTTTATATTATTTATTTTTAAATT-TAT-ATATA-TATATTATT
1 TT-AAACTTTTTTATATTATTTA-TTTTAAATTGTTTCATATATTAT-TTATT
11295625 TTAA
1 TTAA
11295629 TTCATTTGTC
Statistics
Matches: 358, Mismatches: 70, Indels: 65
0.73 0.14 0.13
Matches are distributed among these distances:
47 20 0.06
48 43 0.12
49 42 0.12
50 49 0.14
51 62 0.17
52 62 0.17
53 50 0.14
54 21 0.06
55 7 0.02
56 2 0.01
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.60
Consensus pattern (50 bp):
TTAAACTTTTTTATATTATTTATTTTAAATTGTTTCATATATTATTTATT
Found at i:11299651 original size:4 final size:4
Alignment explanation
Indices: 11299642--11299672 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
11299632 CATTCACAAA
11299642 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
11299673 AACAAGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:11299699 original size:8 final size:8
Alignment explanation
Indices: 11299639--11299701 Score: 67
Period size: 8 Copynumber: 7.9 Consensus size: 8
11299629 CGGCATTCAC
11299639 AAAAAAGA
1 AAAAAAGA
*
11299647 AAGAAAGA
1 AAAAAAGA
*
11299655 AAGAAAGA
1 AAAAAAGA
*
11299663 AAGAAAGA
1 AAAAAAGA
11299671 AAAACAAGA
1 AAAA-AAGA
11299680 AAAATAAG-
1 AAAA-AAGA
11299688 -AAAAAGA
1 AAAAAAGA
11299695 AAAAAAG
1 AAAAAAG
11299702 GATTATATGT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
6 3 0.06
7 3 0.06
8 32 0.65
9 11 0.22
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (8 bp):
AAAAAAGA
Found at i:11301251 original size:46 final size:46
Alignment explanation
Indices: 11301179--11301271 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
11301169 TAATAGATCA
* *
11301179 ATGATACAAATCCTATACCCCTGAGTTGCAGTGGGCTGGATTGAAG
1 ATGATACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATGGAAG
*
11301225 ATGATACAAATCCTATAGCCCC-GAGTTTCAGTGGGATGGATGGAAG
1 ATGATACAAATCCTATA-CCCCTGAGTTGCAGTGGGATGGATGGAAG
11301271 A
1 A
11301272 AATCACAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 39 0.91
47 4 0.09
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (46 bp):
ATGATACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATGGAAG
Found at i:11301342 original size:50 final size:50
Alignment explanation
Indices: 11301278--11301409 Score: 183
Period size: 50 Copynumber: 2.6 Consensus size: 50
11301268 AAGAAATCAC
* * * * *
11301278 AAATTTTATCTCCCTAAAGTTGTAGTGGAGTATATAGAAGTTACCATGGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATAGAAGTTACCATGGA
* * * *
11301328 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATCGAAGTTATCGTGGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATAGAAGTTACCATGGA
11301378 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
11301410 GATTAAAGCG
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (50 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATAGAAGTTACCATGGA
Found at i:11301445 original size:44 final size:43
Alignment explanation
Indices: 11301379--11301990 Score: 368
Period size: 44 Copynumber: 13.7 Consensus size: 43
11301369 TATCGTGGAA
*
11301379 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * * *
11301422 GAACCTTATCTCCCTGAAGTTGCAGTAGAGTAGGTTAAAGTTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * * * *
11301466 AAGTCTTATCTCCCAGAAGTTGCAATGGGGTAGATTGAAGATAAC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-AC
* * * * *
11301511 AAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * *
11301555 AAGTCTTATCTCGCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-C
* * * *
11301600 AAATCTCATCTCCCTAAAGTTGCAGTGGAGTAGATTAAACCTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * ** *
11301644 AGACCTTATCTCCCTGAAGTAGCAGTGGAGCAGATGGAAGCCAC
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * *
11301688 AAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGATAGTG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA--C
* * *
11301734 AATCTTATTTCCCCGAAGTTGCAGTGGAACAGATTAAAGCTACAAACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT----A-C
* * * ** * *
11301782 ATAAATCTTATCTTCCTAAAGTTG-A-TGAAAATAAGATTGAAA-ATATG
1 ---AATCTTATCTCCCTGAAGTTGCAGTG--GAGCAGATT-AAAGCTA-C
* * * * *
11301829 AGTCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGTTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * * * *
11301872 AGATCTTATCTTCCT-AGAGTTGCAGCGGAGTAAATTGAAGATAAC
1 A-ATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGCT-AC
** * * * * *
11301917 GAGCCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* *
11301961 GAGTCTTATCTCCCTGAAGTTGTAGTGGAG
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAG
11301991 TGGATCAAAG
Statistics
Matches: 442, Mismatches: 98, Indels: 56
0.74 0.16 0.09
Matches are distributed among these distances:
43 10 0.02
44 260 0.59
45 130 0.29
46 10 0.02
47 1 0.00
49 3 0.01
50 1 0.00
51 24 0.05
52 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
Found at i:11301546 original size:89 final size:88
Alignment explanation
Indices: 11301381--11301781 Score: 394
Period size: 89 Copynumber: 4.5 Consensus size: 88
11301371 TCGTGGAAAA
* * * *
11301381 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGACGAACCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAACCTTATCTCCCTAAAGTTGCA
* *
11301446 GTAGAGTAGGTTAAAGTTACAAG
66 GTGGAGCAGGTTAAAGTTACAAG
* * * * *
11301469 TCTTATCTCCCAGAAGTTGCAATGGGGTAGATTGAAGATAACAAACCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CAACAAACCTTATCTCCCTAAAGTTGC
*
11301534 AGTGGAGCAGGTTGAAGTTACAAG
65 AGTGGAGCAGGTTAAAGTTACAAG
* * * *
11301558 TCTTATCTCGCTGAAGTTGCAGTGGAGCAGACTGAAG-ATAGCAAATCTCATCTCCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCA-A-CAAACCTTATCTCCCTAAAGTTG
* * **
11301622 CAGTGGAGTAGATTAAACCTAC-AG
64 CAGTGGAGCAGGTTAAAGTTACAAG
* * * * ** * *
11301646 ACCTTATCTCCCTGAAGTAGCAGTGGAGCAGATGGAAGCCACAAGTCTTATCTCCCTGAAGTTGT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAACCTTATCTCCCTAAAGTTGC
** * *
11301711 AGTGGAGCAGACTAAAGATAGTGAA-
65 AGTGGAGCAGGTTAAAGTTA--CAAG
* * * * *
11301736 TCTTATTTCCCCGAAGTTGCAGTGGAACAGATTAAAGCTACAAACC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAACC
11301782 ATAAATCTTA
Statistics
Matches: 255, Mismatches: 50, Indels: 15
0.80 0.16 0.05
Matches are distributed among these distances:
87 1 0.00
88 71 0.28
89 182 0.71
91 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (88 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAAACCTTATCTCCCTAAAGTTGCA
GTGGAGCAGGTTAAAGTTACAAG
Found at i:11301574 original size:133 final size:134
Alignment explanation
Indices: 11301382--11301991 Score: 511
Period size: 133 Copynumber: 4.5 Consensus size: 134
11301372 CGTGGAAAAT
* * *
11301382 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGACGAA-CCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC-AAGTCTTATCTCCCTGAAGTTGCA
* ** * * * *
11301446 GTAGAGTAGGTTAAAGTTA-CAAGTCTTATCTCCCAGAAGTTGCAATGGGGTAGATTGAAGATAA
65 GTGGAGTAGACTAAAGATAGCAAGTCTTATCTCCCAGAAGTTGCAGTGGAGTAGATTAAAGATAA
11301510 CAAAC
130 CAAAC
* * * *
11301515 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCGCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAG
* * * * **
11301580 TGGAGCAGACTGAAGATAGCAAATCTCATCTCCCTA-AAGTTGCAGTGGAGTAGATTAAACCT-A
66 TGGAGTAGACTAAAGATAGCAAGTCTTATCTCCC-AGAAGTTGCAGTGGAGTAGATTAAAGATAA
*
11301643 CAGAC
130 CAAAC
* * * *
11301648 CTTATCTCCCTGAAGTAGCAGTGGAGCAGATGGAAGCCACAAGTCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAG
* * * * **
11301713 TGGAGCAGACTAAAGATAGTGAA-TCTTATTTCCCCGAAGTTGCAGTGGAACAGATTAAAGCTAC
66 TGGAGTAGACTAAAGATAG-CAAGTCTTATCTCCCAGAAGTTGCAGTGGAGTAGATTAAAG--A-
* *
11301777 AAACCATAAAT
127 TAA-C--AAAC
* * * ** ** ** *
11301788 CTTATCTTCCTAAAGTTG-A-TGAAAATAAGATTGAAAATATGAGTCTTATCTTCCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTG--GAGCAGATTGAAGCTACAAGTCTTATCTCCCTGAAGTTGC
* * * * * * *
11301851 AGTGGAGTAGATTGAAGTTA-C-AGATCTTATCTTCCTAG-AGTTGCAGCGGAGTAAATTGAAGA
64 AGTGGAGTAGACTAAAGATAGCAAG-TCTTATC-TCCCAGAAGTTGCAGTGGAGTAGATTAAAGA
* *
11301913 TAACGAGC
127 TAACAAAC
* * * * * *
11301921 CTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACGAGTCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAG
11301986 TGGAGT
66 TGGAGT
11301992 GGATCAAAGC
Statistics
Matches: 373, Mismatches: 85, Indels: 38
0.75 0.17 0.08
Matches are distributed among these distances:
132 2 0.01
133 231 0.62
134 37 0.10
135 4 0.01
136 2 0.01
137 3 0.01
138 3 0.01
139 25 0.07
140 66 0.18
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (134 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGTAGACTAAAGATAGCAAGTCTTATCTCCCAGAAGTTGCAGTGGAGTAGATTAAAGATAAC
AAAC
Found at i:11303389 original size:50 final size:49
Alignment explanation
Indices: 11303335--11303487 Score: 182
Period size: 49 Copynumber: 3.1 Consensus size: 49
11303325 TCAGATACTG
*
11303335 TTTATATTAAACTTACTTATTTTATTTATTTTTAAATCTCTCATATATTA
1 TTTATATTAAACTTACTTATTTTATTTA-TTTTAAATCTTTCATATATTA
** ** * *
11303385 TTTATATTAAACTTGTTTATTTTA-TTGCTTTAAGTCCTTTCATATGTTA
1 TTTATATTAAACTTACTTATTTTATTTATTTTAAAT-CTTTCATATATTA
* *
11303434 TTTATTTTAAACTTACTTATTTTATTTATTATAAATCTTTCATATTATTTA
1 TTTATATTAAACTTACTTATTTTATTTATTTTAAATCTTTCATA-TA-TTA
11303485 TTT
1 TTT
11303488 TGAACAGTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
48 6 0.07
49 42 0.50
50 30 0.36
51 6 0.07
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (49 bp):
TTTATATTAAACTTACTTATTTTATTTATTTTAAATCTTTCATATATTA
Found at i:11303632 original size:43 final size:47
Alignment explanation
Indices: 11303539--11303632 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 47
11303529 TATAGTATTT
*
11303539 ATTTTAAATTGTTTTATCATATTATTTATTTTAATTTATTTTGCATTATA
1 ATTTTAAATTGTTTTATCATATTATTTACTTTAA--TA-TTTGCATTATA
*
11303589 ATTTTAAATTG-TTTAT-ATATTATTTACTTTAA-A-TTGCTTTATA
1 ATTTTAAATTGTTTTATCATATTATTTACTTTAATATTTGCATTATA
11303632 A
1 A
11303633 ACTATTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
43 10 0.24
45 1 0.02
48 15 0.36
49 5 0.12
50 11 0.26
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (47 bp):
ATTTTAAATTGTTTTATCATATTATTTACTTTAATATTTGCATTATA
Found at i:11303664 original size:26 final size:24
Alignment explanation
Indices: 11303591--11303822 Score: 91
Period size: 26 Copynumber: 9.1 Consensus size: 24
11303581 GCATTATAAT
*
11303591 TTTAAA-TTGTTTATATATTATTTA
1 TTTAAACTT-TTTATATTTTATTTA
***
11303615 CTTTAAA-TTGCTTTATAAACTATTTA
1 -TTTAAACTT--TTTATATTTTATTTA
11303641 TTTCAAACTGTTTTATATTTTATTTA
1 TTT-AAACT-TTTTATATTTTATTTA
* * * *
11303667 TGTTAAAATTTATGTA-TATATTGTA
1 T-TTAAACTTTTTATATTTTATT-TA
* * * *
11303692 TTCTGAACCATTTTATATATTACTTA
1 TT-T-AAACTTTTTATATTTTATTTA
** *
11303718 TTTTAATTTTTTTTCATATATTATTTA
1 -TTTAA-ACTTTTT-ATATTTTATTTA
11303745 TTTTAAACTTTTTATATTTT-TTTA
1 -TTTAAACTTTTTATATTTTATTTA
*
11303769 CTTTAAA-TAGTTTCAT-TTATTATTTA
1 -TTTAAACT--TTTTATATT-TTATTTA
11303795 TTTTAAAACTTTTT-TATTTTATTTA
1 -TTT-AAACTTTTTATATTTTATTTA
11303820 TTT
1 TTT
11303823 TTAATTTTTT
Statistics
Matches: 159, Mismatches: 29, Indels: 39
0.70 0.13 0.17
Matches are distributed among these distances:
23 1 0.01
24 21 0.13
25 43 0.27
26 64 0.40
27 28 0.18
28 2 0.01
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (24 bp):
TTTAAACTTTTTATATTTTATTTA
Found at i:11303784 original size:50 final size:50
Alignment explanation
Indices: 11303375--11303839 Score: 178
Period size: 51 Copynumber: 9.2 Consensus size: 50
11303365 TTTAAATCTC
* * * * * **
11303375 TCATATATTATTTATATTAAACTTGTT-TATTTTATTGCTTTAAGTCCTT
1 TCATATATTATTTATTTTAAACTTTTTATATTTTTTTACTTTAAATATTT
* * * *
11303424 TCATATGTTATTTATTTTAAACTTACTTAT-TTTATTTA-TTATAAAT-CTT
1 TCATATATTATTTATTTTAAACTT-TTTATATTTTTTTACTT-TAAATATTT
* * * ** *
11303473 TC--ATATTATTTATTTTGAACAGTTTTATTATTATTTATT-TTTTCAGTTTCTTT
1 TCATATATTATTTATTTTAAAC-TTTTTA-TATT-TTT-TTACTTT-A-AATATTT
* * * * *
11303526 TCATATAGTATTTATTTTAAATTGTTTTATCATATTATTTATTTTAATTTATTT
1 TCATATATTATTTATTTTAAACT-TTTTAT-AT-TTTTTTACTTTAA-ATATTT
*
11303580 TGCAT-TA-TA---ATTTTAAA-TTGTTTATATATTATTTACTTTAAAT-TGCTT
1 T-CATATATTATTTATTTTAAACTT-TTTATAT-TTTTTTACTTTAAATAT--TT
* * *
11303628 T-ATAAACTATTTATTTCAAACTGTTTTATATTTTATTTA-TGTTAAA-A-TT
1 TCATATATTATTTATTTTAAACT-TTTTATATTTT-TTTACT-TTAAATATTT
* * * * ** * * *
11303677 T-ATGTATATATTGTATTCTGAACCATTTTATATATTACTTATTTTAATTTTTTT
1 TCATATAT-TATT-TATT-TTAAACTTTTTATAT-TTTTTTACTTTAA-ATATTT
*
11303731 TCATATATTATTTATTTTAAACTTTTTATATTTTTTTACTTTAAATAGTT
1 TCATATATTATTTATTTTAAACTTTTTATATTTTTTTACTTTAAATATTT
* * * *
11303781 TCATTTATTATTTATTTTAAAACTTTTT-TATTTTATTTATTTTTAATTTTT
1 TCATATATTATTTATTTT-AAACTTTTTATATTTT-TTTACTTTAAATATTT
*
11303832 TTATATAT
1 TCATATAT
11303840 AGTATTTTAA
Statistics
Matches: 318, Mismatches: 54, Indels: 86
0.69 0.12 0.19
Matches are distributed among these distances:
46 3 0.01
47 21 0.07
48 23 0.07
49 43 0.14
50 52 0.16
51 72 0.23
52 37 0.12
53 11 0.03
54 19 0.06
55 36 0.11
56 1 0.00
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (50 bp):
TCATATATTATTTATTTTAAACTTTTTATATTTTTTTACTTTAAATATTT
Found at i:11303832 original size:25 final size:25
Alignment explanation
Indices: 11303715--11303833 Score: 93
Period size: 25 Copynumber: 4.7 Consensus size: 25
11303705 TATATATTAC
11303715 TTATTTT-AATTTTTTTTCATATATTAT
1 TTATTTTAAATTTTTTTT-AT-T-TTAT
* *
11303742 TTATTTTAAACTTTTTATATTTT-T
1 TTATTTTAAATTTTTTTTATTTTAT
* *
11303766 TTACTTTAAATAGTTTCATTTA--TTAT
1 TTATTTTAAAT--TTT-TTTTATTTTAT
**
11303792 TTATTTTAAAACTTTTTTATTTTAT
1 TTATTTTAAATTTTTTTTATTTTAT
*
11303817 TTATTTTTAATTTTTTT
1 TTATTTTAAATTTTTTT
11303834 ATATATAGTA
Statistics
Matches: 72, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
23 4 0.06
24 12 0.17
25 22 0.31
26 14 0.19
27 12 0.17
28 8 0.11
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.69
Consensus pattern (25 bp):
TTATTTTAAATTTTTTTTATTTTAT
Found at i:11311937 original size:10 final size:10
Alignment explanation
Indices: 11311924--11311954 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
11311914 TTACGAGTAA
11311924 TTATACTTCC
1 TTATACTTCC
*
11311934 TTATGCTTCC
1 TTATACTTCC
11311944 TTATACTTCC
1 TTATACTTCC
11311954 T
1 T
11311955 AAAAAGTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.16, C:0.29, G:0.03, T:0.52
Consensus pattern (10 bp):
TTATACTTCC
Found at i:11318463 original size:55 final size:55
Alignment explanation
Indices: 11318400--11318506 Score: 189
Period size: 55 Copynumber: 1.9 Consensus size: 55
11318390 TTTCAAACGA
*
11318400 TATCATACCCCACAATATAGTGCAAGAAAACCTTTTCTATTTG-ATTAATTGGTGG
1 TATCATACCCCACAATATAGTGCAAGAAAAACTTTTCTATTTGCA-TAATTGGTGG
11318455 TATCATACCCCACAATATAGTGCAAGAAAAACTTTTCTATTTGCATAATTGG
1 TATCATACCCCACAATATAGTGCAAGAAAAACTTTTCTATTTGCATAATTGG
11318507 CATTGACCTT
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
55 49 0.98
56 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (55 bp):
TATCATACCCCACAATATAGTGCAAGAAAAACTTTTCTATTTGCATAATTGGTGG
Found at i:11319384 original size:15 final size:15
Alignment explanation
Indices: 11319356--11319389 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11319346 CATAAGGAGG
*
11319356 AAAAGATAAGGGGAA
1 AAAAGATAAAGGGAA
*
11319371 AAAAGTTAAAGGGAA
1 AAAAGATAAAGGGAA
11319386 AAAA
1 AAAA
11319390 TATGAGAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (15 bp):
AAAAGATAAAGGGAA
Found at i:11320180 original size:78 final size:78
Alignment explanation
Indices: 11320047--11320190 Score: 245
Period size: 78 Copynumber: 1.8 Consensus size: 78
11320037 ATGATGTGAA
* *
11320047 AGGAAGGAAACTTCTTGTTTCTAGATTTTGTGCTATAGATTCTTGTGTACGTGTTAAGATTTGAT
1 AGGAAGGAAACTTCTTGTTTCTAGATTTTGTGCTATAGATTCTTGCGTACATGTTAAGATTTGAT
11320112 AAAATGGTGTAAG
66 AAAATGGTGTAAG
*
11320125 AGGAAGGAAACTTCTTGTTTCTAGATTTTGTGCTATCA-ATTCTTGCGTTCATGTTAAGATTTGA
1 AGGAAGGAAACTTCTTGTTTCTAGATTTTGTGCTAT-AGATTCTTGCGTACATGTTAAGATTTGA
11320189 TA
65 TA
11320191 GATTAATGAT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 61 0.98
79 1 0.02
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (78 bp):
AGGAAGGAAACTTCTTGTTTCTAGATTTTGTGCTATAGATTCTTGCGTACATGTTAAGATTTGAT
AAAATGGTGTAAG
Found at i:11320943 original size:27 final size:27
Alignment explanation
Indices: 11320905--11320958 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
11320895 ACACACTAAG
11320905 TTCGTATGAACTTACTCTATTATCTTT
1 TTCGTATGAACTTACTCTATTATCTTT
11320932 TTCGTATGAACTTACTCTATTATCTTT
1 TTCGTATGAACTTACTCTATTATCTTT
11320959 ACCTTCTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (27 bp):
TTCGTATGAACTTACTCTATTATCTTT
Found at i:11323112 original size:36 final size:36
Alignment explanation
Indices: 11323065--11323133 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
11323055 AAGTAAAAAC
* *
11323065 TAAACTTACATGAATAAAAACGTCATTTTCTCCTAT
1 TAAACTTACATGAATAAAAACCTAATTTTCTCCTAT
11323101 TAAACTTACATGAATAAAAACCTAATTTTCTCC
1 TAAACTTACATGAATAAAAACCTAATTTTCTCC
11323134 ATTTAAGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (36 bp):
TAAACTTACATGAATAAAAACCTAATTTTCTCCTAT
Found at i:11324651 original size:23 final size:23
Alignment explanation
Indices: 11324613--11324658 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
11324603 GTCAATCTTT
*
11324613 AAGACTACGAGGATATTTAAGTA
1 AAGACTACGAGAATATTTAAGTA
*
11324636 AAGACTATGAGAATATTTAAGTA
1 AAGACTACGAGAATATTTAAGTA
11324659 CTATATAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.28
Consensus pattern (23 bp):
AAGACTACGAGAATATTTAAGTA
Found at i:11326134 original size:11 final size:11
Alignment explanation
Indices: 11326118--11326142 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11326108 CCTAAGGTGA
11326118 CTTCTTTTTTT
1 CTTCTTTTTTT
11326129 CTTCTTTTTTT
1 CTTCTTTTTTT
11326140 CTT
1 CTT
11326143 TACTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
CTTCTTTTTTT
Found at i:11326193 original size:18 final size:18
Alignment explanation
Indices: 11326170--11326204 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
11326160 TTTTTACATA
11326170 AAAATACTAAAAA-ATATC
1 AAAATA-TAAAAACATATC
11326188 AAAATATAAAAACATAT
1 AAAATATAAAAACATAT
11326205 GTATTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATATAAAAACATATC
Found at i:11327054 original size:21 final size:21
Alignment explanation
Indices: 11327030--11327069 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
11327020 TATATTTATT
11327030 ATTA-TATTATTTATTTTCACC
1 ATTATTATTA-TTATTTTCACC
11327051 ATTATTATTATTATTTTCA
1 ATTATTATTATTATTTTCA
11327070 TCATATCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTATTATTATTTTCACC
Found at i:11327055 original size:33 final size:33
Alignment explanation
Indices: 11327001--11327065 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
11326991 TTTCATATAG
* *
11327001 TATTATCTTTTTTTACTATTA-TATTTATTATTA
1 TATTATCTTTTTTCACCATTATTA-TTATTATTA
11327034 TATTAT-TTATTTTCACCATTATTATTATTATT
1 TATTATCTT-TTTTCACCATTATTATTATTATT
11327066 TTCATCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 2 0.07
33 24 0.86
34 2 0.07
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.65
Consensus pattern (33 bp):
TATTATCTTTTTTCACCATTATTATTATTATTA
Found at i:11339005 original size:28 final size:28
Alignment explanation
Indices: 11338973--11339035 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
11338963 CTATAACATC
*
11338973 ACCATTTCAAAGTCAGTATTTATAGTTT
1 ACCATTTCAAAGTCAGTATTTACAGTTT
*
11339001 ACCATTTCAAAGTCAGTATTTGCAGTTT
1 ACCATTTCAAAGTCAGTATTTACAGTTT
11339029 ACCATTT
1 ACCATTT
11339036 ACTTCCCTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.41
Consensus pattern (28 bp):
ACCATTTCAAAGTCAGTATTTACAGTTT
Found at i:11339414 original size:11 final size:11
Alignment explanation
Indices: 11339398--11339449 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
11339388 CATAATTTTA
11339398 CAAAATCTTGC
1 CAAAATCTTGC
11339409 CAAAATCTTGC
1 CAAAATCTTGC
11339420 CAAATAT-TTG-
1 CAAA-ATCTTGC
* *
11339430 -ATAATATTGC
1 CAAAATCTTGC
11339440 CAAAATCTTG
1 CAAAATCTTG
11339450 ATATCAATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
8 2 0.06
9 5 0.15
11 25 0.74
12 2 0.06
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (11 bp):
CAAAATCTTGC
Found at i:11341230 original size:21 final size:22
Alignment explanation
Indices: 11341206--11341281 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
11341196 TATCACATAT
11341206 TTTTAT-TTTTTAAAATTTTTG
1 TTTTATCTTTTTAAAATTTTTG
* *
11341227 TTTTATCTTTTTAAATTTTTTA
1 TTTTATCTTTTTAAAATTTTTG
* * *
11341249 TTTATATATATTTTTAAATTTATG
1 TTT-TATCT-TTTTAAAATTTTTG
*
11341273 CTTTATCTT
1 TTTTATCTT
11341282 ATTTTATATT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
21 6 0.14
22 17 0.40
23 8 0.19
24 12 0.28
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.68
Consensus pattern (22 bp):
TTTTATCTTTTTAAAATTTTTG
Found at i:11341284 original size:24 final size:25
Alignment explanation
Indices: 11341234--11341286 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
11341224 TTGTTTTATC
* *
11341234 TTTTTAAATTTTTTATTTATATATA
1 TTTTTAAATTTATGATTTATATATA
* *
11341259 TTTTTAAATTTATGCTTTATCT-TA
1 TTTTTAAATTTATGATTTATATATA
11341283 TTTT
1 TTTT
11341287 ATATTAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (25 bp):
TTTTTAAATTTATGATTTATATATA
Found at i:11341834 original size:18 final size:18
Alignment explanation
Indices: 11341808--11341842 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11341798 TCGGATAAGC
11341808 TTTACTTTAATAAAACGT
1 TTTACTTTAATAAAACGT
* *
11341826 TTTAGTTTATTAAAACG
1 TTTACTTTAATAAAACG
11341843 GTGTGTTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (18 bp):
TTTACTTTAATAAAACGT
Found at i:11342815 original size:25 final size:26
Alignment explanation
Indices: 11342776--11342834 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
11342766 TAATATGCAT
*
11342776 ATATAAAATGGTTTAAAATAAATAAC
1 ATATAAAATGATTTAAAATAAATAAC
* *
11342802 ATATAAAAT-ATTTAGAATAAATAAT
1 ATATAAAATGATTTAAAATAAATAAC
*
11342827 ATGTAAAA
1 ATATAAAA
11342835 GAAACTTGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 20 0.69
26 9 0.31
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (26 bp):
ATATAAAATGATTTAAAATAAATAAC
Found at i:11342872 original size:25 final size:25
Alignment explanation
Indices: 11342777--11342872 Score: 61
Period size: 25 Copynumber: 3.7 Consensus size: 25
11342767 AATATGCATA
** **
11342777 TATAAAATGGTTTAAAATAAATAACA
1 TATAAAATCATTT-AAATAAATAATG
11342803 TATAAAAT-ATTTAGAATAAATAATATG
1 TATAAAATCATTTA-AATAAAT-A-ATG
* * **
11342830 TAAAAGAAAC-TTGGAATAAATAATG
1 TATAA-AATCATTTAAATAAATAATG
11342855 TATAAAATCATTTAAATA
1 TATAAAATCATTTAAATA
11342873 GGAAGATATA
Statistics
Matches: 53, Mismatches: 11, Indels: 13
0.69 0.14 0.17
Matches are distributed among these distances:
24 4 0.08
25 23 0.43
26 10 0.19
27 12 0.23
28 4 0.08
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.32
Consensus pattern (25 bp):
TATAAAATCATTTAAATAAATAATG
Found at i:11345028 original size:74 final size:74
Alignment explanation
Indices: 11344871--11345018 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
11344861 TTTTTCTACC
11344871 ATCATTATATATATTTTTAGTTATAAACAATGAAACATATTTTTTAGTACTTACATTATAATATA
1 ATCATTATATATATTTTTAGTTATAAACAATGAAACATATTTTTTAGTACTTACATTATAATATA
11344936 GTATATTTA
66 GTATATTTA
11344945 ATCATTATATATATTTTTAGTTATAAACAATGAAACATATTTTTTAGTACTTACATTATAATATA
1 ATCATTATATATATTTTTAGTTATAAACAATGAAACATATTTTTTAGTACTTACATTATAATATA
11345010 GTATATTTA
66 GTATATTTA
11345019 CTTTCTATAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (74 bp):
ATCATTATATATATTTTTAGTTATAAACAATGAAACATATTTTTTAGTACTTACATTATAATATA
GTATATTTA
Found at i:11345703 original size:13 final size:14
Alignment explanation
Indices: 11345685--11345716 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
11345675 ACACCCCTTC
11345685 ACCCACTAACCT-A
1 ACCCACTAACCTAA
11345698 ACCCACTAACCTAA
1 ACCCACTAACCTAA
11345712 ACCCA
1 ACCCA
11345717 AGACCCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.41, C:0.47, G:0.00, T:0.12
Consensus pattern (14 bp):
ACCCACTAACCTAA
Found at i:11346184 original size:14 final size:15
Alignment explanation
Indices: 11346160--11346188 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11346150 TTACCGAATC
11346160 TGTTTTCTTTTCTTT
1 TGTTTTCTTTTCTTT
11346175 TGTTTT-TTTTCTTT
1 TGTTTTCTTTTCTTT
11346189 CTTTTACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (15 bp):
TGTTTTCTTTTCTTT
Found at i:11346252 original size:11 final size:11
Alignment explanation
Indices: 11346236--11346262 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
11346226 GTACTATTAA
11346236 AAAAATAAAAT
1 AAAAATAAAAT
11346247 AAAAATAAAAT
1 AAAAATAAAAT
11346258 AAAAA
1 AAAAA
11346263 AAGAAACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:11347031 original size:3 final size:3
Alignment explanation
Indices: 11347023--11347063 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
11347013 TACTATTTCC
11347023 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
11347064 ATATACGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:11347172 original size:53 final size:53
Alignment explanation
Indices: 11347109--11347214 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
11347099 TGTATTATAA
* *
11347109 ATATTACATAGTATTATTAATAGCTTTTAATTTTATTGCTTTTGTTAATGTAT
1 ATATTACATAGTATTATTAATAGCTTTTAATATTATTGCTTTTATTAATGTAT
11347162 ATATTACATAGTATTATTAATAGCTTTTAATATTATTGCTTTTATTAATGTAT
1 ATATTACATAGTATTATTAATAGCTTTTAATATTATTGCTTTTATTAATGTAT
11347215 TTGTATGTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.32, C:0.06, G:0.08, T:0.54
Consensus pattern (53 bp):
ATATTACATAGTATTATTAATAGCTTTTAATATTATTGCTTTTATTAATGTAT
Found at i:11347379 original size:15 final size:15
Alignment explanation
Indices: 11347359--11347392 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11347349 TTTAATACCA
11347359 TATTATATATATTAT
1 TATTATATATATTAT
* *
11347374 TATTATATCTATTTT
1 TATTATATATATTAT
11347389 TATT
1 TATT
11347393 CCTATTACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTATATATATTAT
Found at i:11347407 original size:21 final size:21
Alignment explanation
Indices: 11347374--11347430 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
11347364 TATATATTAT
* * * *
11347374 TATTATATCTATTTTTATTCC
1 TATTACATATATTTTTAATAC
* *
11347395 TATTACATTTATTATTAATAC
1 TATTACATATATTTTTAATAC
*
11347416 TAGTACATATATTTT
1 TATTACATATATTTT
11347431 ATTATACGTG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.56
Consensus pattern (21 bp):
TATTACATATATTTTTAATAC
Found at i:11358849 original size:40 final size:40
Alignment explanation
Indices: 11358816--11358924 Score: 184
Period size: 40 Copynumber: 2.8 Consensus size: 40
11358806 AAAAAAGAAA
* * *
11358816 ATCAAGATGAAAACCCG-AAAGAGCGTCTTAAAAAAAAGG
1 ATCAAGGTGAAAACTCGAAAAGGGCGTCTTAAAAAAAAGG
11358855 ATCAAGGTGAAAACTCGAAAAGGGCGTCTTAAAAAAAAGG
1 ATCAAGGTGAAAACTCGAAAAGGGCGTCTTAAAAAAAAGG
11358895 ATCAAGGTGAAAACTCGAAAAGGGCGTCTT
1 ATCAAGGTGAAAACTCGAAAAGGGCGTCTT
11358925 GATTAACACA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
39 15 0.23
40 51 0.77
ACGTcount: A:0.46, C:0.15, G:0.24, T:0.16
Consensus pattern (40 bp):
ATCAAGGTGAAAACTCGAAAAGGGCGTCTTAAAAAAAAGG
Found at i:11359949 original size:79 final size:79
Alignment explanation
Indices: 11359814--11359967 Score: 263
Period size: 79 Copynumber: 1.9 Consensus size: 79
11359804 TTAATTTGTA
* *
11359814 CTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACTCTGAGGTAATTTC
1 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTC
11359879 AATTTATGTTTCTG
66 AATTTATGTTTCTG
* *
11359893 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTC
*
11359958 AATTTCTGTT
66 AATTTATGTT
11359968 CTTCCAATTT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (79 bp):
CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTC
AATTTATGTTTCTG
Found at i:11360021 original size:99 final size:92
Alignment explanation
Indices: 11359876--11360205 Score: 364
Period size: 85 Copynumber: 3.7 Consensus size: 92
11359866 CTGAGGTAAT
* * **
11359876 TTCAATTTATGTTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTCAATTTCTGTTTTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
11359941 CACGCTGAGGTATTTTCAATTTCTGTTC
65 CACGCTGAGGTATTTTCAATTTCTGTTC
*
11359969 TTCCAATTTCTGTTTTAATTCATGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC
1 TT-CAATTTCTG-TTT--TT-AT-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
11360034 TCATGGCACGCTGAGGTATTTTCAATTTCT-ATC
60 TCA-GGCACGCTGAGGTATTTTCAATTTCTGTTC
* * *
11360067 TTTAATTTC------TATTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGC
1 TTCAATTTCTGTTTTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGC
* *
11360126 ACGCTGAGATAATTTCAATTTCTGTT-
66 ACGCTGAGGTATTTTCAATTTCTGTTC
* * *
11360152 TTCAATTTATG------TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
1 TTCAATTTCTGTTTTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
11360206 TTTAATTTTT
Statistics
Matches: 209, Mismatches: 18, Indels: 28
0.82 0.07 0.11
Matches are distributed among these distances:
85 71 0.34
86 42 0.20
87 2 0.01
88 1 0.00
93 2 0.01
94 8 0.04
95 3 0.01
97 7 0.03
98 4 0.02
99 67 0.32
100 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (92 bp):
TTCAATTTCTGTTTTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGC
ACGCTGAGGTATTTTCAATTTCTGTTC
Found at i:11360308 original size:54 final size:54
Alignment explanation
Indices: 11360163--11360311 Score: 210
Period size: 54 Copynumber: 2.8 Consensus size: 54
11360153 TCAATTTATG
* * * *
11360163 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTG
1 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTAATATCTA
*
11360217 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATATCTA
1 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTAATATCTA
* * *
11360271 TTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTTTCAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
11360312 TCAAGATCAC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 3 0.04
54 82 0.96
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (54 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTAATATCTA
Found at i:11360947 original size:13 final size:13
Alignment explanation
Indices: 11360929--11360962 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
11360919 AAACACCCCT
11360929 TAACCCACTAACC
1 TAACCCACTAACC
11360942 TAACCCACTAACC
1 TAACCCACTAACC
11360955 TAAACCCA
1 T-AACCCA
11360963 AGACCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (13 bp):
TAACCCACTAACC
Found at i:11361424 original size:15 final size:15
Alignment explanation
Indices: 11361404--11361433 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11361394 TTACCGAATC
11361404 TGTTTTCTTTTCTTT
1 TGTTTTCTTTTCTTT
*
11361419 TGTTTTTTTTTCTTT
1 TGTTTTCTTTTCTTT
11361434 CTTCTACATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (15 bp):
TGTTTTCTTTTCTTT
Found at i:11362233 original size:3 final size:3
Alignment explanation
Indices: 11362225--11362286 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
11362215 TACTATTTCC
11362225 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11362273 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
11362287 ATACGTATCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:11362755 original size:24 final size:21
Alignment explanation
Indices: 11362698--11362759 Score: 52
Period size: 24 Copynumber: 2.6 Consensus size: 21
11362688 TACTATTTTA
*
11362698 TTTTAATATTATTATGTATATAT
1 TTTTAATA-T-TTATGTATACAT
11362721 TTTTCATATATGTTATGTACATACAT
1 TTTT-A-ATAT-TTATGT--ATACAT
11362747 TTTTAATATTTAT
1 TTTTAATATTTAT
11362760 TTTATATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
23 8 0.24
24 12 0.36
25 4 0.12
26 9 0.27
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (21 bp):
TTTTAATATTTATGTATACAT
Found at i:11365650 original size:6 final size:6
Alignment explanation
Indices: 11365639--11365675 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
11365629 TAGTTATTAG
11365639 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT-TT TT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TT
11365676 AAATCAAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTCTT
Found at i:11369194 original size:31 final size:31
Alignment explanation
Indices: 11369153--11369225 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
11369143 AAAAAACCTT
*
11369153 AACAACTTAGTGACTTAAACAAAAACTTTCA
1 AACAATTTAGTGACTTAAACAAAAACTTTCA
** **
11369184 AATGATTTAGTGACTTAAATGAAAACTTTCA
1 AACAATTTAGTGACTTAAACAAAAACTTTCA
11369215 AACAATTTAGT
1 AACAATTTAGT
11369226 AACCATTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.32
Consensus pattern (31 bp):
AACAATTTAGTGACTTAAACAAAAACTTTCA
Found at i:11369603 original size:29 final size:31
Alignment explanation
Indices: 11369571--11369640 Score: 72
Period size: 36 Copynumber: 2.2 Consensus size: 31
11369561 GGAATCTATG
11369571 ATTT-TGATC-TTTGGTTGATGGAATATAAA
1 ATTTATGATCATTTGGTTGATGGAATATAAA
*
11369600 ATTTATTAAATTATCATTTGGTTGATGGAATATAAA
1 A--T-TT--ATGATCATTTGGTTGATGGAATATAAA
11369636 ATTTA
1 ATTTA
11369641 CTAAATTATC
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
29 1 0.03
31 2 0.06
32 2 0.06
33 2 0.06
34 1 0.03
35 4 0.12
36 21 0.64
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.46
Consensus pattern (31 bp):
ATTTATGATCATTTGGTTGATGGAATATAAA
Found at i:11369627 original size:36 final size:36
Alignment explanation
Indices: 11369580--11369653 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
11369570 GATTTTGATC
*
11369580 TTTGGTTGATGGAATATAAAATTTATTAAATTATCA
1 TTTGGTTGATGGAATATAAAATTTACTAAATTATCA
11369616 TTTGGTTGATGGAATATAAAATTTACTAAATTATCA
1 TTTGGTTGATGGAATATAAAATTTACTAAATTATCA
11369652 TT
1 TT
11369654 GTTATAGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.45
Consensus pattern (36 bp):
TTTGGTTGATGGAATATAAAATTTACTAAATTATCA
Found at i:11371468 original size:16 final size:15
Alignment explanation
Indices: 11371446--11371487 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
11371436 TATATATGCA
*
11371446 TATAATAAAAGTATG
1 TATAATAAAAGTATC
11371461 TAATAATAATAA-TATC
1 T-ATAATAA-AAGTATC
11371477 TATAATAAAAG
1 TATAATAAAAG
11371488 AAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 11 0.48
17 2 0.09
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (15 bp):
TATAATAAAAGTATC
Found at i:11371805 original size:23 final size:23
Alignment explanation
Indices: 11371711--11371822 Score: 67
Period size: 23 Copynumber: 4.9 Consensus size: 23
11371701 AGTATTTGAG
*
11371711 AATATATACATAAGATGATAT-AA
1 AATATATACATAATAT-ATATAAA
* *
11371734 AATACATACATGGAATAGTATA-AGA
1 AATATATACAT--AATA-TATATAAA
**
11371759 AATATATA-ACTAATGGCATA-AAA
1 AATATATACA-TAAT-ATATATAAA
11371782 AATATATACATAATATATAT-AA
1 AATATATACATAATATATATAAA
*
11371804 AATACAT--ATAATATATATA
1 AATATATACATAATATATATA
11371823 CGTATTAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
20 11 0.16
22 11 0.16
23 30 0.43
24 2 0.03
25 15 0.21
26 1 0.01
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.30
Consensus pattern (23 bp):
AATATATACATAATATATATAAA
Found at i:11371807 original size:11 final size:11
Alignment explanation
Indices: 11371780--11371822 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
11371770 AATGGCATAA
*
11371780 AAAATATATAC
1 AAAATATATAT
*
11371791 ATAATATATAT
1 AAAATATATAT
*
11371802 AAAATACATAT
1 AAAATATATAT
*
11371813 AATATATATA
1 AAAATATATA
11371823 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:11372471 original size:13 final size:13
Alignment explanation
Indices: 11372450--11372502 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
11372440 CACCGCGTAA
*
11372450 ATTTTTTTTTTAT
1 ATTTTTTTATTAT
*
11372463 ATTTGTTTT-GTAT
1 ATTT-TTTTATTAT
*
11372476 ATATATTTTATTAT
1 AT-TTTTTTATTAT
11372490 ATTTTTTTATTAT
1 ATTTTTTTATTAT
11372503 GATGTATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 23 0.70
14 10 0.30
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.74
Consensus pattern (13 bp):
ATTTTTTTATTAT
Found at i:11372559 original size:17 final size:16
Alignment explanation
Indices: 11372539--11372588 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
11372529 CGAAAAAAGG
11372539 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
*
11372555 AAAAATAAGAGTAAAAT
1 AAAAATAA-AATAAAAT
* *
11372572 AATAAAGAAGATAAAAT
1 AA-AAATAAAATAAAAT
11372589 CACCTTTAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 8 0.29
17 15 0.54
18 5 0.18
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:11373669 original size:87 final size:87
Alignment explanation
Indices: 11373577--11373791 Score: 394
Period size: 87 Copynumber: 2.5 Consensus size: 87
11373567 GCGTGAGCCA
* * *
11373577 AGGCTCAACTCACCTCTTGCAATATAAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
11373642 AAATACCTCGATATGTGACTCG
66 AAATACCTCGATATGTGACTCG
11373664 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
11373729 AAATACCTCGATATGTGACTCG
66 AAATACCTCGATATGTGACTCG
*
11373751 AGGCTCAACTCAACTCTCGTAATATGAGTTGATTTTTGAAA
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAA
11373792 AATAGAAATT
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 124 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGA
AAATACCTCGATATGTGACTCG
Found at i:11373831 original size:30 final size:30
Alignment explanation
Indices: 11373795--11373851 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
11373785 TTTGAAAAAT
11373795 AGAAATT-AAAAGACTCAACTCAACTCTAGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTAGC
*
11373825 AGAAATTAAAAAGCTCAACTCACCTCT
1 AGAAATTAAAAAGCTCAACTCAACTCT
11373852 CGCAATATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.21
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTAGC
Found at i:11373949 original size:24 final size:24
Alignment explanation
Indices: 11373922--11373970 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
11373912 CCAAGGCTCA
11373922 ACTCACTTCTCGCAATATGAGTTG
1 ACTCACTTCTCGCAATATGAGTTG
11373946 ACTCACTTCTCGCAATATGAGTTG
1 ACTCACTTCTCGCAATATGAGTTG
11373970 A
1 A
11373971 TTTTTGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (24 bp):
ACTCACTTCTCGCAATATGAGTTG
Found at i:11374197 original size:77 final size:77
Alignment explanation
Indices: 11374001--11374241 Score: 270
Period size: 79 Copynumber: 3.1 Consensus size: 77
11373991 AAAATAGATT
** * * *
11374001 TTGAAAATACCTC-GACATGTGACCCAAGGCTCAACTCACATCTCGCAATGTGCGTTGATTTTTT
1 TTGAAAATACCTCAG-CGCGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
11374065 TGAAAAATATAAA
65 TGAAAGACAGAAA
* * **
11374078 TTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 TTG--AAAATACCTCAGCGCGTGA-CCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
11374142 TTTGAAAGACAGAAA
63 TTTGAAAGACAGAAA
* * * *
11374157 TTGAAAATAGCTCAGCGCGTGAGCCAAGGTTCAACTCACCTCTCGCAATATGAGTCGATTATTTT
1 TTGAAAATACCTCAGCGCGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTT
*
11374222 TGAAAGGCAGAAA
65 TGAAAGACAGAAA
11374235 TTGAAAA
1 TTGAAAA
11374242 ACGGAAATTG
Statistics
Matches: 139, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
76 2 0.01
77 49 0.35
78 23 0.17
79 61 0.44
80 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (77 bp):
TTGAAAATACCTCAGCGCGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAGACAGAAA
Found at i:11374314 original size:92 final size:91
Alignment explanation
Indices: 11374143--11374331 Score: 229
Period size: 92 Copynumber: 2.1 Consensus size: 91
11374133 GTTGATTTTT
* * * * *
11374143 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGTTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAC
11374208 GAGTCGATTATTTTTGA-AAGGCAGAAA
66 GAGTCGATTATTTTTGACAA--CAGAAA
* * * * *
11374235 TTGAAAAACGGAAATTGAAAATACCTCGGCATGTGA-CCTGAGGCTCAACTCGCCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
* *
11374299 CGAGTTGATTTTTTTTGACAACAGAAA
65 CGAGTCGATTATTTTTGACAACAGAAA
11374326 TTGAAA
1 TTGAAA
11374332 TTACCTCAGC
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
91 14 0.17
92 67 0.81
93 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (91 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAC
GAGTCGATTATTTTTGACAACAGAAA
Found at i:11374370 original size:75 final size:77
Alignment explanation
Indices: 11374245--11374409 Score: 237
Period size: 75 Copynumber: 2.1 Consensus size: 77
11374235 TTGAAAAACG
* *
11374245 GAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCA-GTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
11374309 TTTTTTGACAA-CA
65 TTTTTTGA-AAGCA
* * *
11374322 GAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
11374386 TTTTTGAAAGGCA
66 TTTTTGAAA-GCA
11374399 GAAATTGAAAA
1 GAAATTGAAAA
11374410 ATGGAAATTG
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
75 39 0.49
76 10 0.13
77 30 0.38
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (77 bp):
GAAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTTTGAAAGCA
Found at i:11374442 original size:168 final size:167
Alignment explanation
Indices: 11374064--11374561 Score: 723
Period size: 168 Copynumber: 3.0 Consensus size: 167
11374054 GTTGATTTTT
** * * * * *
11374064 TTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAAT
1 TTGAAAAATGGAAATTG--AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAAT
* * * * * *
11374129 ATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGTTCAACT
64 ATGAGTTGATTTTTTTGACA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACT
* *
11374193 CACCTCTCGCAATATGAGTCGA-TTATTTTTGAAAGGCAGAAA
125 CACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
* * *
11374235 TTGAAAAACGGAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAT
11374300 GAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
66 GAGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
11374365 CTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
130 CTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
*
11374403 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATAT
1 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAT
11374468 GAGTTGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
11374532 TCGCACTATGAGTTGATTTTTTTTTTGAAA
131 TCGCAATATGAGTTGA-TTTTTTTTTGAAA
11374562 ATACCTCAGC
Statistics
Matches: 300, Mismatches: 23, Indels: 12
0.90 0.07 0.04
Matches are distributed among these distances:
166 74 0.25
167 48 0.16
168 87 0.29
169 67 0.22
170 10 0.03
171 14 0.05
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (167 bp):
TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAT
GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA
Found at i:11374593 original size:64 final size:64
Alignment explanation
Indices: 11374492--11374616 Score: 205
Period size: 64 Copynumber: 2.0 Consensus size: 64
11374482 ACAACAGAAA
* * * *
11374492 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCACTATGAGTTGATTTTTTTT
1 TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
*
11374556 TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
11374617 GAAACATACG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (64 bp):
TTGAAAATACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
Found at i:11374669 original size:141 final size:138
Alignment explanation
Indices: 11374417--11374693 Score: 371
Period size: 141 Copynumber: 2.0 Consensus size: 138
11374407 AAAATGGAAA
* * * * *
11374417 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATATGAGTTGATTTTTTG
1 TTGAAAATACCTCAGCGCGT-ACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* * * *
11374482 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCACTATGAGTTG
65 ACAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTG
*
11374547 ATTTTTTTT
130 AATTTTTTT
*
11374556 TTGAAAATACCTCAGCGCGT-CCTAAGGCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTTGA
1 TTGAAAATACCTCAGCGCGTACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-
11374619 AACATACGAAAAAATTGACAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
65 -ACA-AC--AAAAATTGA-AATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
11374683 AATTGAATTTT
125 AATTGAATTTT
11374694 GAAATAAAAC
Statistics
Matches: 121, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
136 6 0.05
137 32 0.26
138 3 0.02
139 20 0.17
141 58 0.48
142 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (138 bp):
TTGAAAATACCTCAGCGCGTACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
CAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGA
ATTTTTTT
Found at i:11377076 original size:27 final size:28
Alignment explanation
Indices: 11377028--11377081 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
11377018 TAAAATAGGA
* *
11377028 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
11377056 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATATATGGTA-ATAAAAATA
11377082 CATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:11377876 original size:30 final size:30
Alignment explanation
Indices: 11377840--11377984 Score: 245
Period size: 30 Copynumber: 4.8 Consensus size: 30
11377830 TAGGTATAAG
* *
11377840 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
11377870 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
11377900 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
11377930 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
11377960 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
11377985 TGAGAAAAGT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 107 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:11377933 original size:60 final size:60
Alignment explanation
Indices: 11377840--11377984 Score: 272
Period size: 60 Copynumber: 2.4 Consensus size: 60
11377830 TAGGTATAAG
*
11377840 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
11377900 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
11377960 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
11377985 TGAGAAAAGT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 83 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:11378750 original size:14 final size:14
Alignment explanation
Indices: 11378731--11378793 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
11378721 GAGTTGATTT
*
11378731 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
11378745 TTGAAAAAATAGAAA
1 TTG-AAAAATAGAAA
**
11378760 TTGAAAAGCAGAAA
1 TTGAAAAATAGAAA
* *
11378774 TT-AAAAACAGAAT
1 TTGAAAAATAGAAA
11378787 TTGAAAA
1 TTGAAAA
11378794 GACCTCAGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 18 0.43
15 13 0.31
ACGTcount: A:0.62, C:0.03, G:0.13, T:0.22
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:11378754 original size:15 final size:15
Alignment explanation
Indices: 11378734--11378766 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
11378724 TTGATTTTTG
*
11378734 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
11378749 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
11378764 AAA
1 AAA
11378767 GCAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:11378766 original size:13 final size:13
Alignment explanation
Indices: 11378750--11378793 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
11378740 ATAAATTGAA
*
11378750 AAAATAGAAATTG
1 AAAACAGAAATTG
*
11378763 AAAAGCAGAAATTA
1 AAAA-CAGAAATTG
*
11378777 AAAACAGAATTTG
1 AAAACAGAAATTG
11378790 AAAA
1 AAAA
11378794 GACCTCAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.64, C:0.05, G:0.14, T:0.18
Consensus pattern (13 bp):
AAAACAGAAATTG
Found at i:11378895 original size:74 final size:74
Alignment explanation
Indices: 11378776--11379024 Score: 270
Period size: 74 Copynumber: 3.3 Consensus size: 74
11378766 AGCAGAAATT
* * * * *
11378776 AAAAACAGAATTTGAAAAGACCTCAGTGTGTGGCCTGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAAG-CCTCAGCGTGTGACCAGAGGCTCAACTCACCTCTCGCAATATGAG
11378841 TTGATTTTT-
65 TTGATTTTTA
* * * *
11378850 AAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTTTCACAATATGAG
1 AAAAACAGAAATTGAAAA-GCCTCAGCGTGTGACCAGAGGCTCAACTCACCTCTCGCAATATGAG
*
11378915 TTGATTCTTTTG
65 TTGA-T-TTTTA
* ** * * *
11378927 AAAAGCAGAAATTGAAAATAG-CTCAGCACGTGAGCAAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTG-AAA-AGCCTCAGCGTGTGACCAGAGGCTCAACTCACCTCTCGCAATATGA
11378991 GTTGATTTTTA
64 GTTGATTTTTA
*
11379002 AAAAACAGAAATT-AAAAGACTCA
1 AAAAACAGAAATTGAAAAGCCTCA
11379025 ACTCACCTCT
Statistics
Matches: 150, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
72 2 0.01
73 7 0.05
74 59 0.39
75 18 0.12
76 5 0.03
77 54 0.36
78 4 0.03
79 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (74 bp):
AAAAACAGAAATTGAAAAGCCTCAGCGTGTGACCAGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTA
Found at i:11378968 original size:77 final size:74
Alignment explanation
Indices: 11378816--11379018 Score: 250
Period size: 77 Copynumber: 2.7 Consensus size: 74
11378806 TGGCCTGAGA
* * **
11378816 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAGCAGAAATTGAAAACGCCTCAGCGTGT
1 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTAAAAGCAGAAATTGAAAAAGCCTCAGCACGT
**
11378881 GACCCGAGG
66 GACCAAAGG
*
11378890 CTCAACTCACCTTTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAG-CTCAGC
1 CTCAACTCACCTTTCGCAATATGAGTTGA-T-TTTT-AAAAGCAGAAATTGAAAA-AGCCTCAGC
*
11378954 ACGTGAGCAAAGG
62 ACGTGACCAAAGG
*
11378967 CTCAACTCA-CTTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATT-AAAA
1 CTCAACTCACCTT-TCGCAATATGAGTTGATTTTT-AAAAGCAGAAATTGAAAA
11379019 GACTCAACTC
Statistics
Matches: 113, Mismatches: 11, Indels: 10
0.84 0.08 0.07
Matches are distributed among these distances:
74 31 0.27
75 17 0.15
76 8 0.07
77 56 0.50
78 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (74 bp):
CTCAACTCACCTTTCGCAATATGAGTTGATTTTTAAAAGCAGAAATTGAAAAAGCCTCAGCACGT
GACCAAAGG
Found at i:11379068 original size:54 final size:54
Alignment explanation
Indices: 11378962--11379072 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 54
11378952 GCACGTGAGC
* * *
11378962 AAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTA
1 AAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTA
* * **
11379016 AAAGACTCAACTCACCTCTCTCAATATGAGTTGATTTTTGAAAAGTAAAAATTA
1 AAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTA
11379070 AAA
1 AAA
11379073 ACAGAGTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (54 bp):
AAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTA
Found at i:11379192 original size:16 final size:17
Alignment explanation
Indices: 11379159--11379193 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11379149 TGATATTTTG
*
11379159 AAAAGCAGAAATTGGAA
1 AAAAACAGAAATTGGAA
11379176 AAAAACAGAAATT-GAA
1 AAAAACAGAAATTGGAA
11379192 AA
1 AA
11379194 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.06, G:0.17, T:0.11
Consensus pattern (17 bp):
AAAAACAGAAATTGGAA
Found at i:11379372 original size:73 final size:73
Alignment explanation
Indices: 11379281--11379720 Score: 314
Period size: 74 Copynumber: 5.7 Consensus size: 73
11379271 ATCGACAATT
* * *
11379281 CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAGAAAT
1 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAT
*
11379346 TGAAATTA
66 TGAAAATA
* *
11379354 CCTCAGCATGTCCTGAGGCTCAACGCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAAC
1 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A-AAAC
*
11379418 AAAAATTGAAAATA
60 AGAAATTGAAAATA
* * * * * * *
11379432 CCTCAGCACGTGAGCC-GAGGCTCAACTCACTTCTTGCAATATAAATTGATTTTTTTG-ACAATA
1 CCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACA
* *
11379495 GAAATTGCAATTA
61 GAAATTGAAAATA
* * * *
11379508 CCTCAGCATGTCCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACATAAAT
1 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAT
*
11379573 TGAAACACAAA
66 TG-AA-A-ATA
** * * * * * *
11379584 AAT-TGACAAT-ACCTCAGCGTGCCCCAAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
1 CCTCAG-C-GTGTCCT--GAG-G-CTCAA----C---TCACCTCTCGCAATATGAGTTGATTTTT
*
11379647 GAAAAACAGAAATTTAAAAATA
53 GAAAAACAGAAA-TTGAAAATA
*
11379669 CCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
11379721 TTTTTACGAA
Statistics
Matches: 283, Mismatches: 51, Indels: 65
0.71 0.13 0.16
Matches are distributed among these distances:
72 11 0.04
73 54 0.19
74 60 0.21
75 2 0.01
76 25 0.09
77 5 0.02
78 24 0.08
79 1 0.00
80 35 0.12
81 6 0.02
82 1 0.00
83 7 0.02
84 2 0.01
85 7 0.02
86 2 0.01
87 39 0.14
88 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (73 bp):
CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAT
TGAAAATA
Found at i:11379483 original size:80 final size:71
Alignment explanation
Indices: 11379260--11379577 Score: 269
Period size: 73 Copynumber: 4.2 Consensus size: 71
11379250 TTTTGAAATT
* * * * *
11379260 AAAACACAAAAATCGACAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGT
1 AAAA-ACAAAAATTGAAAATACCTCAGCATG-GCCGAGGCTCAACTCACCTCTTGCAATATGAGT
11379325 TGATTTTTG
64 TGA-TTTTG
* * * * *
11379334 AAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACGCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCATGGCC-GAGGCTCAACTCACCTCTTGCAATATGAGTT
11379399 GATTTTG
65 GATTTTG
*
11379406 ACAAACAGAAACAAAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAA
1 ----A-A-AAACAAAAATTGAAAATACCTCAGCA--TG-GCCGAGGCTCAACTCACCTCTTGCAA
* *
11379471 TATAAATTGATTTTTTTG
57 TATGAGTTGA---TTTTG
* * * * * * * *
11379489 -ACAATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACATCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCATG-GCCGAGGCTCAACTCACCTCTTGCAATATGAGTT
11379553 GATTTTTG
65 GA-TTTTG
*
11379561 AAAAACATAAATTGAAA
1 AAAAACAAAAATTGAAA
11379578 CACAAAAATT
Statistics
Matches: 198, Mismatches: 32, Indels: 29
0.76 0.12 0.11
Matches are distributed among these distances:
72 13 0.07
73 63 0.32
74 37 0.19
76 22 0.11
77 2 0.01
78 24 0.12
80 30 0.15
81 2 0.01
83 5 0.03
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (71 bp):
AAAAACAAAAATTGAAAATACCTCAGCATGGCCGAGGCTCAACTCACCTCTTGCAATATGAGTTG
ATTTTG
Found at i:11379642 original size:87 final size:87
Alignment explanation
Indices: 11379496--11379660 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
11379486 TTGACAATAG
* * *
11379496 AAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTG
1 AAATTGCAATTACCTCAGCATGCCCCAAGGCTCAACTCACATATCGCAATATGAGTTGATTTTTG
*
11379561 AAAAACATAAATTGAAACACAA
66 AAAAACAGAAATTGAAACACAA
* *
11379583 AAATTGACAA-TACCTCAGCGTGCCCCAAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
1 AAATTG-CAATTACCTCAGCATGCCCCAAGGCTCAACTCACATATCGCAATATGAGTTGATTTTT
11379647 GAAAAACAGAAATT
65 GAAAAACAGAAATT
11379661 TAAAAATACC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
87 68 0.96
88 3 0.04
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (87 bp):
AAATTGCAATTACCTCAGCATGCCCCAAGGCTCAACTCACATATCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTGAAACACAA
Found at i:11379748 original size:14 final size:14
Alignment explanation
Indices: 11379729--11379757 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11379719 TTTTTTTACG
11379729 AACAGAAATTGAAA
1 AACAGAAATTGAAA
11379743 AACAGAAATTGAAA
1 AACAGAAATTGAAA
11379757 A
1 A
11379758 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:11379803 original size:93 final size:92
Alignment explanation
Indices: 11379645--11379813 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 92
11379635 GAGTTGATTT
* **
11379645 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTAGCCTGAGGCTCAACTCACCTCTCGCAATATG
11379710 AGTTGATTTTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTTTACGAACAGAAA
*
11379737 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GT-AGCCTGAGGCTCAACTCACCTCTCGCAAT
11379800 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
11379814 GACAAACAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
91 14 0.20
92 14 0.20
93 40 0.57
94 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (92 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTAGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTTTACGAACAGAAA
Found at i:11379871 original size:73 final size:73
Alignment explanation
Indices: 11379737--11380718 Score: 1080
Period size: 73 Copynumber: 13.0 Consensus size: 73
11379727 CGAACAGAAA
* * *
11379737 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
11379801 TGAGTTGATTT
63 TGAGTTGATTT
*
11379812 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
11379877 GTTGATTTT
66 GTTGA-TTT
* *
11379886 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
11379951 AGTTGATTTTT
65 AGTTGA--TTT
* * * * * *
11379962 TTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTTTCGCAAGA
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
11380026 TGAGTTGATTT
63 TGAGTTGATTT
* *
11380037 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
11380102 GTTTATTT
66 GTTGATTT
* * *
11380110 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGATGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
11380175 AGTTGATTTTTT
65 AGTTGA---TTT
* * * *
11380187 TTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
*
11380251 TGAGTTAATTT
63 TGAGTTGATTT
* * * *
11380262 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
11380327 GTTGATTT
66 GTTGATTT
* *
11380335 TT-AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
11380399 AGTTGATTTTTT
65 AGTTGA---TTT
* * * ** * * * * *
11380411 TTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAAC
1 TTGACAAACAGAAATTG-A-AA-A-TACCT---CAG-CGT--GTCCTGAG-GCTC-A-ACTC---
*
11380474 TCACCTCTCGCAATATGAGTTAATTT
50 --ACCTCTCGCAATATGAGTTGATTT
* * * *
11380500 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCGCCTTTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
11380565 GTTGATTT
66 GTTGATTT
* *
11380573 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
11380638 GTTGA-TT
66 GTTGATTT
* * * * * *
11380645 TTGAAAAACAAAAATT-AAAAGTACCTCAACGTGTCTTGAGGCTGAACTCATCTCTCGCAATATG
1 TTGACAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
11380709 AGTTGATTT
65 AGTTGATTT
11380718 T
1 T
11380719 CCTTGAAAAG
Statistics
Matches: 776, Mismatches: 88, Indels: 88
0.82 0.09 0.09
Matches are distributed among these distances:
71 3 0.00
72 77 0.10
73 266 0.34
74 67 0.09
75 152 0.20
76 36 0.05
77 58 0.07
78 41 0.05
79 7 0.01
80 6 0.01
81 2 0.00
82 2 0.00
83 2 0.00
84 2 0.00
85 7 0.01
86 4 0.01
87 5 0.01
88 1 0.00
89 18 0.02
92 20 0.03
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:11380188 original size:225 final size:225
Alignment explanation
Indices: 11379743--11380646 Score: 1517
Period size: 225 Copynumber: 4.0 Consensus size: 225
11379733 GAAATTGAAA
*
11379743 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
*
11379808 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
11379873 ATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
131 ATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
11379938 CTCTCGCAATATGAGTTGA-TTTTTTTTACG
195 CTCTCGCAATATGAGTTGATTTTTTTTTACG
* * *
11379968 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTTTCGCAAGATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
11380033 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
* *
11380098 ATGAGTTTATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGATGCTCAACTCACC
131 ATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
11380163 TCTCGCAATATGAGTTGATTTTTTTTTACG
196 TCTCGCAATATGAGTTGATTTTTTTTTACG
11380193 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* *
11380258 ATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
11380323 ATGAGTTGATTTTT-AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
131 ATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
11380387 TCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
196 TCTCGCAATATGAGTTGATTTTTTTTT----AC----------G
11380431 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* *
11380496 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCGCCTTTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
* * *
11380561 ATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
131 ATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
11380625 TCTAGCAATATGAGTTGATTTT
196 TCTCGCAATATGAGTTGATTTT
11380647 GAAAAACAAA
Statistics
Matches: 645, Mismatches: 18, Indels: 19
0.95 0.03 0.03
Matches are distributed among these distances:
224 149 0.23
225 284 0.44
228 2 0.00
238 200 0.31
239 10 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (225 bp):
AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTTTACG
Found at i:11380435 original size:14 final size:14
Alignment explanation
Indices: 11380416--11380443 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11380406 TTTTTTTTAC
11380416 GAACAGAAATTGAA
1 GAACAGAAATTGAA
11380430 GAACAGAAATTGAA
1 GAACAGAAATTGAA
11380444 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:11380543 original size:165 final size:153
Alignment explanation
Indices: 11379812--11380718 Score: 944
Period size: 150 Copynumber: 5.9 Consensus size: 153
11379802 GAGTTGATTT
*
11379812 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGA
11379877 GTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GTTGA-TTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
11379942 CGCAATATGAGTTGA-TTTTTTTT-AC
127 CGCAATATGAGTTGATTTTTTTTTGAC
** * * *
11379967 --G--AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTTTCGCAAGATG
1 TTGAAAACAGAAATTGAAATTACCTCAGC--GTG-CCCGAGGCTCAACTCACCTCTCGCAATATG
* * * *
11380028 AGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
63 AGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
11380093 GCAATATGA---G-TTTATTTTTGA-
128 GCAATATGAGTTGATTTTTTTTTGAC
* * * *
11380114 ---AAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGATGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAA-TTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * *
11380176 GTTGATTTTTTTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCAC
64 GTTGA---TTTTTGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCAC
*
11380240 CTCTCGCAATATGAGTT-A---ATTTTTGA-
123 CTCTCGCAATATGAGTTGATTTTTTTTTGAC
*
11380266 ---AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAG
11380328 TTGATTTTT-AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
65 TTGATTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
11380392 CAATATGAGTTGATTTTTTTTTACGAAC
129 CAATATGAGTTGATTTTTTTTT--G-AC
** *
11380420 AGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGC
1 -----TTGAA-AACAGAAATTGAAATTACCTCAGC--GTG-CCCGAGGCTCAACTCACCTCTCGC
* * * * * *
11380485 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCG
57 AATATGAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
*
11380550 CCTTTCGCAATATGAGTTGA----TTTTTGAC
122 CCTCTCGCAATATGAGTTGATTTTTTTTTGAC
* *
11380578 ----AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * *
11380639 TTGA-TTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTGAACTCATCTCTCGC
65 TTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
11380703 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
11380719 CCTTGAAAAG
Statistics
Matches: 643, Mismatches: 66, Indels: 92
0.80 0.08 0.11
Matches are distributed among these distances:
145 63 0.10
146 69 0.11
147 52 0.08
148 50 0.08
149 15 0.02
150 104 0.16
151 67 0.10
152 85 0.13
153 4 0.01
158 2 0.00
159 1 0.00
161 5 0.01
162 2 0.00
163 22 0.03
165 92 0.14
166 10 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (153 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTGAC
Found at i:11380610 original size:238 final size:238
Alignment explanation
Indices: 11380192--11380646 Score: 840
Period size: 238 Copynumber: 1.9 Consensus size: 238
11380182 TTTTTTTTAC
11380192 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
11380257 AATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAA
66 AATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAA
11380322 TATGAGTTGATTTTTAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
131 TATGAGTTGATTTTTAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
11380387 TCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAA
196 TCTAGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAA
11380430 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
11380495 AATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCGCCTTTCGCAA
66 AATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAA
* * *
11380560 TATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
131 TATGAGTTGATTTTT-AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
11380624 CTCTAGCAATATGAGTTGATTTT
195 CTCTAGCAATATGAGTTGATTTT
11380647 GAAAAACAAA
Statistics
Matches: 210, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
238 200 0.95
239 10 0.05
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (238 bp):
GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
AATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAA
TATGAGTTGATTTTTAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
TCTAGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAA
Found at i:11380703 original size:145 final size:147
Alignment explanation
Indices: 11380431--11380718 Score: 393
Period size: 145 Copynumber: 2.0 Consensus size: 147
11380421 GAAATTGAAG
*
11380431 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTAGCAATATGAGTTA
* * * * * * *
11380496 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCGCCTTTCGCAAT
65 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
11380561 ATGAGTTGATTTTTGACA
130 ATGAGTTGATTTTTGACA
** * *
11380579 AACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTAGCAATATGAGTTA
** * *
11380642 A-TTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTGAACTCATCTCTCGCAAT
65 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
11380706 ATGAGTTGATTTT
130 ATGAGTTGATTTT
11380719 CCTTGAAAAG
Statistics
Matches: 123, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
145 67 0.54
146 34 0.28
148 22 0.18
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (147 bp):
AACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTAGCAATATGAGTTAA
TTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGACA
Found at i:11394916 original size:47 final size:48
Alignment explanation
Indices: 11394855--11394985 Score: 178
Period size: 47 Copynumber: 2.7 Consensus size: 48
11394845 ATTATTTCTT
*
11394855 TTTTTTCTCTTTCTTTTTCCAGGTGATGTTTCTTTTTCCCTATTTCC-C
1 TTTTTT-TCTTTCTTTTTCCAGGTGATGTTTCTTCTTCCCTATTTCCAC
* *
11394903 TTTTTTTCTTTCTTTTTCCGGGTGATGTTTCTTCTTCCCTATTTCCAT
1 TTTTTTTCTTTCTTTTTCCAGGTGATGTTTCTTCTTCCCTATTTCCAC
*
11394951 TTTTCTTTCTTT-TTTGTCCTA-GTGATGTTTCTTCT
1 TTTT-TTTCTTTCTTTTTCC-AGGTGATGTTTCTTCT
11394986 CCACAATTTC
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
47 38 0.51
48 30 0.40
49 7 0.09
ACGTcount: A:0.06, C:0.22, G:0.10, T:0.62
Consensus pattern (48 bp):
TTTTTTTCTTTCTTTTTCCAGGTGATGTTTCTTCTTCCCTATTTCCAC
Done.