Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 49 of 295
Found at i:14740924 original size:118 final size:118
Alignment explanation
Indices: 14740696--14740933 Score: 386
Period size: 118 Copynumber: 2.0 Consensus size: 118
14740686 TTATTGCATC
* * *
14740696 AACTTAAGTTTTTATTTCAATGCCATAATTAATTGCTAAGTGATAGGAATAAAAGTACCGTAAAG
1 AACTTAAGTTTCTATTTCAATGCCATAATTAATTGCTAAGTCATAGGAATAAAAGTACCATAAAG
*
14740761 TTTTTGTATTAATAGTCAAATTGTATTTTGTCATTTTACTAAAAAATGGGCAG
66 CTTTTGTATTAATAGTCAAATTGTATTTTGTCATTTTACTAAAAAATGGGCAG
* * *
14740814 AACTTAAGTTTCTATTTCAATGCCATAATTAATTGTTAAGTCATAGGGATAAAAGTATCATAAAG
1 AACTTAAGTTTCTATTTCAATGCCATAATTAATTGCTAAGTCATAGGAATAAAAGTACCATAAAG
* *
14740879 ACTTTTGTATTAATAGTCAGATTGTATTTTGTCCTTTTACTAAAAAATGGGCAG
66 -CTTTTGTATTAATAGTCAAATTGTATTTTGTCATTTTACTAAAAAATGGGCAG
14740933 A
1 A
14740934 CTAGTCTTTA
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
118 59 0.54
119 51 0.46
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (118 bp):
AACTTAAGTTTCTATTTCAATGCCATAATTAATTGCTAAGTCATAGGAATAAAAGTACCATAAAG
CTTTTGTATTAATAGTCAAATTGTATTTTGTCATTTTACTAAAAAATGGGCAG
Found at i:14741472 original size:22 final size:21
Alignment explanation
Indices: 14741430--14741472 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14741420 ATTCAATTTA
* *
14741430 AAATTTTTTAACTTTGCCTCC
1 AAATTTTATAACTTTACCTCC
*
14741451 AAATTTTATAATCTTTATCTCC
1 AAATTTTATAA-CTTTACCTCC
14741473 CCCTTAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.28, C:0.21, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATTTTATAACTTTACCTCC
Found at i:14742645 original size:10 final size:10
Alignment explanation
Indices: 14742603--14742646 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
14742593 ATCAAAATTT
14742603 AATTTTAAAA
1 AATTTTAAAA
*
14742613 AA-TATAAAA
1 AATTTTAAAA
14742622 AATTTTATAAA
1 AATTTTA-AAA
14742633 AATTTTAAAA
1 AATTTTAAAA
14742643 AATT
1 AATT
14742647 AGTATGAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.27
10 12 0.40
11 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AATTTTAAAA
Found at i:14742945 original size:23 final size:22
Alignment explanation
Indices: 14742903--14742945 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
14742893 TAATCTTATT
*
14742903 TAAAAATAATAGAATCATAAAC
1 TAAAAATAATAAAATCATAAAC
*
14742925 TAAAATATAATAAAATTATAA
1 TAAAA-ATAATAAAATCATAA
14742946 TTTAACTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (22 bp):
TAAAAATAATAAAATCATAAAC
Found at i:14742977 original size:22 final size:23
Alignment explanation
Indices: 14742936--14742979 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
14742926 AAAATATAAT
*
14742936 AAAATTATAATTTAACTTCTAAA
1 AAAATTATAATTCAACTTCTAAA
14742959 AAAATTATAATTCAA-TTCTAA
1 AAAATTATAATTCAACTTCTAA
14742980 TTGCTCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (23 bp):
AAAATTATAATTCAACTTCTAAA
Found at i:14747313 original size:18 final size:18
Alignment explanation
Indices: 14747290--14747364 Score: 89
Period size: 18 Copynumber: 4.2 Consensus size: 18
14747280 ACTGTTTACG
14747290 GTACTATTCACGTATACA
1 GTACTATTCACGTATACA
*
14747308 GTACTATTCACGTATA-T
1 GTACTATTCACGTATACA
* * *
14747325 GACACTATTTACGTATACG
1 G-TACTATTCACGTATACA
*
14747344 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
14747362 GTA
1 GTA
14747365 ATTGAGATTG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
17 1 0.02
18 45 0.96
19 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:14751425 original size:11 final size:11
Alignment explanation
Indices: 14751409--14751451 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
14751399 TAGAATATAC
14751409 CCCATACCTTG
1 CCCATACCTTG
*
14751420 CCCATACCTTT
1 CCCATACCTTG
*
14751431 CCCATACC-TA
1 CCCATACCTTG
14751441 CCCATACCTTG
1 CCCATACCTTG
14751452 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:14751446 original size:21 final size:22
Alignment explanation
Indices: 14751409--14751450 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14751399 TAGAATATAC
*
14751409 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
14751431 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
14751451 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:14757663 original size:25 final size:24
Alignment explanation
Indices: 14757601--14757648 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14757591 ATTTGATCCT
14757601 TATTCTTTTTTTGAGCTAAATTTA
1 TATTCTTTTTTTGAGCTAAATTTA
14757625 TATTCTTTTTTTGAGCTAAATTTA
1 TATTCTTTTTTTGAGCTAAATTTA
14757649 ACCTTCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.58
Consensus pattern (24 bp):
TATTCTTTTTTTGAGCTAAATTTA
Found at i:14758036 original size:31 final size:32
Alignment explanation
Indices: 14757977--14758038 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
14757967 AATTATTTCA
** *
14757977 ACTCTTTTTCAAAAGGTTGATTGTCAAATTTG
1 ACTCTTTTTCAAAAGGTTGAAGGCCAAATTTG
*
14758009 ACTCTTTTT-AAAATGTTGAAGGCCAAATTT
1 ACTCTTTTTCAAAAGGTTGAAGGCCAAATTT
14758039 AGCTTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.42
Consensus pattern (32 bp):
ACTCTTTTTCAAAAGGTTGAAGGCCAAATTTG
Found at i:14759902 original size:17 final size:15
Alignment explanation
Indices: 14759873--14759921 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
14759863 TTGACTTCAA
14759873 ATTTTTTTATTTATT
1 ATTTTTTTATTTATT
14759888 ATTTATTTTATTTTATT
1 ATTT-TTTTA-TTTATT
* *
14759905 A-ATGTTTATTTATT
1 ATTTTTTTATTTATT
14759919 ATT
1 ATT
14759922 GTCCCATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 7 0.25
15 8 0.29
16 6 0.21
17 7 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (15 bp):
ATTTTTTTATTTATT
Found at i:14760019 original size:13 final size:14
Alignment explanation
Indices: 14760001--14760055 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 14
14759991 TTTTATTTCG
14760001 TTTATTTTATACT-
1 TTTATTTTATACTA
14760014 TTTATTTTATA-TA
1 TTTATTTTATACTA
*
14760027 TATTATTTATTTACTTA
1 T-TTATTT-TATAC-TA
14760044 TTTATTTTATAC
1 TTTATTTTATAC
14760056 ATATATACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
12 1 0.03
13 12 0.34
14 6 0.17
15 7 0.20
16 6 0.17
17 3 0.09
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATTTTATACTA
Found at i:14760161 original size:3 final size:3
Alignment explanation
Indices: 14760153--14760313 Score: 81
Period size: 3 Copynumber: 56.3 Consensus size: 3
14760143 TCCATTTTAC
* * *
14760153 TTA TTA TTA TTA TTA TTA -TA TTA TTA GTA TTA TTA TTC TT- TT- TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
14760198 CT- TTC TT- TGT- TTA TTA TT- TTGA -TA TTA TGA TT- TGA TGA TCA
1 TTA TTA TTA T-TA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
* * * * *
14760239 ATA TTA TTA TTA TTA TCA TTA TTA TCA TTA TTA TCA TTA TTA CTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
14760286 GTA TTA CTA CTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14760314 ATTGTTTTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
2 14 0.11
3 110 0.89
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:14761123 original size:128 final size:126
Alignment explanation
Indices: 14760878--14761107 Score: 329
Period size: 128 Copynumber: 1.8 Consensus size: 126
14760868 GGTTTCTTTA
* * * *
14760878 AAAATAAGGCAATATTTCGTTTTTTTTGGAAATTCGAGAAAACGTGTCCTAACTTACTGGGTTTC
1 AAAATAAGGCAATATTCCG--TTTCTTGGAAAGTCGAGAAAACGTGCCCTAACTTACTGGGTTTC
* *
14760943 AATTTTTCTCGTTTAACCTAAATAACCTAATATTCCTTCAAATTTCAAAAATATGAATTTTAAAT
64 AATTTTTCTCGTTTAACCTAAATAACCGAATATTCCTTAAAATTT--AAAATATGAATTTTAAAT
*
14761008 AAAATAAGGCAATATTCCG-TTCTTGGAAAGTCGAGAAAATCGTGCCCTAACTTACTGGGTTTCG
1 AAAATAAGGCAATATTCCGTTTCTTGGAAAGTCGAGAAAA-CGTGCCCTAACTTACTGGGTTTCA
*
14761072 ATTTTTCTCGTTTAATCTAAATAACCGAATA-TCCTT
65 ATTTTTCTCGTTTAACCTAAATAACCGAATATTCCTT
14761108 TTAAAAAATT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
127 23 0.25
128 51 0.55
130 18 0.20
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (126 bp):
AAAATAAGGCAATATTCCGTTTCTTGGAAAGTCGAGAAAACGTGCCCTAACTTACTGGGTTTCAA
TTTTTCTCGTTTAACCTAAATAACCGAATATTCCTTAAAATTTAAAATATGAATTTTAAAT
Found at i:14761597 original size:68 final size:68
Alignment explanation
Indices: 14761488--14761629 Score: 275
Period size: 68 Copynumber: 2.1 Consensus size: 68
14761478 TGTGATATTT
14761488 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
1 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
14761553 TCG
66 TCG
*
14761556 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCCAAATATTCATAAAAGGGGA
1 TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
14761621 TCG
66 TCG
14761624 TATTTC
1 TATTTC
14761630 AAAATTTATT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 73 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (68 bp):
TATTTCTCCGGAACAAGAGAATCTTAATATCCACTTCGAGTTATCAAAATATTCATAAAAGGGGA
TCG
Found at i:14763018 original size:3 final size:3
Alignment explanation
Indices: 14763012--14763172 Score: 68
Period size: 3 Copynumber: 53.7 Consensus size: 3
14763002 TTTTTTTACA
* *
14763012 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * * *
14763056 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
14763101 CA- TAT TAAT TAT T-T TCT AACG TAT TAT TAT TACT AAT TAT TAT T-T
1 TAT TAT T-AT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
*
14763146 CTAGT T-T TAT TAT TAT TAT TAA TAT TA
1 -TA-T TAT TAT TAT TAT TAT TAT TAT TA
14763173 GTGTATGTAT
Statistics
Matches: 116, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 12 0.10
3 92 0.79
4 11 0.09
5 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:14763041 original size:23 final size:23
Alignment explanation
Indices: 14763014--14763059 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14763004 TTTTTACATA
14763014 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
14763037 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
14763060 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:14763214 original size:12 final size:12
Alignment explanation
Indices: 14763176--14763214 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14763166 AATATTAGTG
14763176 TATGTATATTATA
1 TATGTATA-TATA
*
14763189 TATGTATGTATA
1 TATGTATATATA
*
14763201 TATGTTTATATA
1 TATGTATATATA
14763213 TA
1 TA
14763215 GTACTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (12 bp):
TATGTATATATA
Found at i:14763430 original size:21 final size:22
Alignment explanation
Indices: 14763401--14763518 Score: 104
Period size: 23 Copynumber: 5.5 Consensus size: 22
14763391 ATGTTTTCAA
14763401 TATTATAT-TTTTT-ATA-TAT
1 TATTATATATTTTTAATACTAT
*
14763420 TATTATATA-TTTTAATATTAT
1 TATTATATATTTTTAATACTAT
14763441 TAGTTATATATTTTGT-ATACTAT
1 TA-TTATATATTTT-TAATACTAT
* * *
14763464 TATATGTATATTTATAATATTA-
1 TAT-TATATATTTTTAATACTAT
* *
14763486 TATTGTATATTTCTAATACTAT
1 TATTATATATTTTTAATACTAT
14763508 TATTTATATAT
1 TA-TTATATAT
14763519 GTATATATAT
Statistics
Matches: 82, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
19 12 0.15
20 3 0.04
21 21 0.26
22 14 0.17
23 31 0.38
24 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (22 bp):
TATTATATATTTTTAATACTAT
Found at i:14763437 original size:8 final size:9
Alignment explanation
Indices: 14763403--14763459 Score: 51
Period size: 9 Copynumber: 5.8 Consensus size: 9
14763393 GTTTTCAATA
*
14763403 TTATATTTT
1 TTATATATT
14763412 TTATATATT
1 TTATATATT
14763421 ATTATATATT
1 -TTATATATT
14763431 TTAATATTATT
1 TT-ATA-TATT
14763442 AGTTATATATT
1 --TTATATATT
*
14763453 TTGTATA
1 TTATATA
14763460 CTATTATATG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 16 0.39
10 12 0.29
11 8 0.20
12 3 0.07
13 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (9 bp):
TTATATATT
Found at i:14763448 original size:41 final size:42
Alignment explanation
Indices: 14763403--14763528 Score: 130
Period size: 44 Copynumber: 2.9 Consensus size: 42
14763393 GTTTTCAATA
14763403 TTATATTTTTTATA-TATTATTATATATTT-TAATATTATTAG
1 TTATATTTTTTATACTATTATTATATATTTATAATATTA-TAG
* *
14763444 TTATATATTTTGTATACTATTATATGTATATTTATAATATTATAT
1 TTATAT-TTTT-TATACTATTAT-TATATATTTATAATATTATAG
* * *
14763489 TGTATATTTCTAATACTATTATTTATATATGTATATATAT
1 T-TATATTTTTTATACTATTA-TTATATATTTATA-ATAT
14763529 GTGTGTATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
41 6 0.08
42 4 0.06
43 4 0.06
44 25 0.35
45 19 0.27
46 13 0.18
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (42 bp):
TTATATTTTTTATACTATTATTATATATTTATAATATTATAG
Found at i:14765479 original size:18 final size:19
Alignment explanation
Indices: 14765443--14765485 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
14765433 CATCTGTTTA
*
14765443 TTTAA-ATTTGAATATATT
1 TTTAATATTTGAATAAATT
14765461 TTTAATATTTGAA-AAATT
1 TTTAATATTTGAATAAATT
*
14765479 TTAAATA
1 TTTAATA
14765486 AAAATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TTTAATATTTGAATAAATT
Found at i:14769804 original size:5 final size:5
Alignment explanation
Indices: 14769794--14769830 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
14769784 CATGCATTTA
14769794 CATTG CATTG CA-T- CATTTG CATTG CATTG CATTG CAT
1 CATTG CATTG CATTG CA-TTG CATTG CATTG CATTG CAT
14769831 CATTTGCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 24 0.83
6 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (5 bp):
CATTG
Found at i:14769821 original size:24 final size:24
Alignment explanation
Indices: 14769794--14769840 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
14769784 CATGCATTTA
14769794 CATTGCATTGCATCATTTGCATTG
1 CATTGCATTGCATCATTTGCATTG
14769818 CATTGCATTGCATCATTTGCATT
1 CATTGCATTGCATCATTTGCATT
14769841 AAATTTCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (24 bp):
CATTGCATTGCATCATTTGCATTG
Found at i:14769840 original size:19 final size:19
Alignment explanation
Indices: 14769788--14769825 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14769778 TCATACCATG
14769788 CATTTACATTGCATTGCAT
1 CATTTACATTGCATTGCAT
*
14769807 CATTTGCATTGCATTGCAT
1 CATTTACATTGCATTGCAT
14769826 TGCATCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (19 bp):
CATTTACATTGCATTGCAT
Found at i:14771773 original size:7 final size:7
Alignment explanation
Indices: 14771761--14771786 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14771751 TTAATAGTCG
14771761 TCAAATT
1 TCAAATT
14771768 TCAAATT
1 TCAAATT
14771775 TCAAATT
1 TCAAATT
14771782 TCAAA
1 TCAAA
14771787 AAAAAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (7 bp):
TCAAATT
Found at i:14771970 original size:10 final size:10
Alignment explanation
Indices: 14771957--14771990 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
14771947 CAAAAATATA
14771957 AAAAAAAAAG
1 AAAAAAAAAG
14771967 -AAAAAAAAG
1 AAAAAAAAAG
14771976 AAAAAAAAAG
1 AAAAAAAAAG
*
14771986 GAAAA
1 AAAAA
14771991 GCAAACAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:14771990 original size:9 final size:9
Alignment explanation
Indices: 14771958--14771983 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14771948 AAAAATATAA
14771958 AAAAAAAAG
1 AAAAAAAAG
14771967 AAAAAAAAG
1 AAAAAAAAG
14771976 AAAAAAAA
1 AAAAAAAA
14771984 AGGAAAAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:14773742 original size:45 final size:43
Alignment explanation
Indices: 14773675--14774143 Score: 206
Period size: 45 Copynumber: 10.7 Consensus size: 43
14773665 ATCTTGTTTC
* * *
14773675 CCTGAAATTGAAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGC-AATCT-AGCTT
* * * ** * *
14773720 CCTGAAGTTGCAGTGAAACAGATTTAAGCCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCAATCTAGCTT
* * * * * * *** * *
14773763 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCA-ATCTAGCTT
*
14773806 CCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGC-AATCT-AGCTT
* * * ** *
14773852 TCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCAATCTAGCTT
* * * * * * *** * *
14773895 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAGATCTCGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCA-ATCTAGCTT
* * *
14773938 CCCTGAAGTTGCAGTGAAACAGATCGAAGACGGTGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGG-CAATCT-AGCTT
* * ** * *
14773984 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCAATCTAGCTT
* * * * * * *** * *
14774027 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAGATCTTGTTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCA-ATCTAG-CTT
* * * * *
14774071 CTTAAAGCTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGC-AATCT-AGCTT
*
14774116 CCTGAAGTTGCAGTGAAGCAGATTTAAG
1 CCTGAAGTTGCAGTGAAGCAGATCTAAG
14774144 CCACCATCCT
Statistics
Matches: 291, Mismatches: 118, Indels: 30
0.66 0.27 0.07
Matches are distributed among these distances:
42 15 0.05
43 77 0.26
44 61 0.21
45 128 0.44
46 10 0.03
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (43 bp):
CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCAATCTAGCTT
Found at i:14773887 original size:132 final size:131
Alignment explanation
Indices: 14773650--14774707 Score: 1153
Period size: 132 Copynumber: 8.1 Consensus size: 131
14773640 TGGGCCTATG
* * * *
14773650 AGGCT-AAAATTTTAGATCTTGTTTCCCTGAAATTGAAGTGAAGCAGATCGAAGACGGCGAATCT
1 AGGCTGAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATCT
* *
14773714 GAGCTTCCTGAAGTTGCAGTGAAACAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGG
66 GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGG
14773779 AGT
129 AGT
14773782 AGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATC
1 AGGCTGAAAATTAT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATC
* * *
14773845 TGAGCTTTCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTG
65 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTG
14773910 GAGT
128 GAGT
* * **
14773914 AGGCT-AAAATT-TCAGATCTCGTTTCCCTGAAGTTGCAGTGAAACAGATCGAAGACGGTGAATC
1 AGGCTGAAAATTAT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATC
*
14773977 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTG
65 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTG
14774042 GAGT
128 GAGT
* * * * * *
14774046 AGGCT-AAAATT-TCAGATCTTGTTTTCTTAAAGCTGCAGTGAAACAGATCGAAGACGGCGAATC
1 AGGCTGAAAATTAT-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATC
* * *
14774109 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTTCCTAAGGTTATAGTG
65 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTG
14774174 GAGT
128 GAGT
* ** *
14774178 AGGCTGAAGATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGACGGCGAATC
1 AGGCTGAAAATTATAGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCAAATC
* * *
14774242 T-AGGCTTCCTGATGTTGCAGTGAAGCAGATTTAAGCA-AGTCATAGCTCTCTAAAGTTGTAGTG
65 TGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTG
14774305 GAGT
128 GAGT
*** * * * * * * * **
14774309 AGGCTGTGGATTGTAGATCTCGTCTCCCTGAAATTGCAGTGAGGCAAATCAAAGACGATAAATCT
1 AGGCTGAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATC-
* * * *
14774374 TG-GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG--CATCCTAGCTCCCTGAGGTTGTAGTGGA
65 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGA
14774436 GT
130 GT
* * ** * *
14774438 AGGCTGAAGATTATAGATCTTGTTTCCCTG-AGATTGCAGAGGGGCAGATCAAAAACGGCAAATC
1 AGGCTGAAAATTATAGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCAAATC
* * * *
14774502 T-AGGCTTCCTGATGTTACAGTAAAGCAGATTTAAGCA-AGTCCTAGCTCTCTAAAGTTGTAGTG
65 TGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTG
14774565 GAGT
128 GAGT
** * * * ** * * * **
14774569 AGGCTGAGGATTGTAGATCTCGTCTCTTTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCT
1 AGGCTGAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATC-
* * * *
14774634 TG-GTTTCCTGAAGATGCAGCGAAGCAGATTTAAGCA-AGTCCTAGCTCCCTAAAGTTGTAGTGA
65 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTGG
14774697 AGT
129 AGT
*
14774700 GGGCTGAA
1 AGGCTGAA
14774708 GATTGTAGGT
Statistics
Matches: 810, Mismatches: 97, Indels: 39
0.86 0.10 0.04
Matches are distributed among these distances:
128 2 0.00
129 101 0.12
130 3 0.00
131 239 0.30
132 387 0.48
133 77 0.10
134 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (131 bp):
AGGCTGAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCAAATCT
GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGAG
T
Found at i:14774973 original size:44 final size:44
Alignment explanation
Indices: 14774900--14775054 Score: 240
Period size: 44 Copynumber: 3.5 Consensus size: 44
14774890 CAAGACCAGA
* * ***
14774900 CAGATTTGGCGTCTCTGTAGTGATGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* *
14774944 CAGATTTGGCGTCTATGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
14774988 CAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
14775032 CAGATTTGGCCTCTCTGT-TTGGC
1 CAGATTTGGCCTCTCTGTATTGGC
14775055 CTCTCTGTAT
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
43 5 0.05
44 99 0.95
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
Found at i:14775054 original size:13 final size:13
Alignment explanation
Indices: 14775036--14775067 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
14775026 AGATAGCAGA
14775036 TTTGGCCTCTCTG
1 TTTGGCCTCTCTG
14775049 TTTGGCCTCTCTG
1 TTTGGCCTCTCTG
14775062 TATTGG
1 T-TTGG
14775068 TGGAGAGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (13 bp):
TTTGGCCTCTCTG
Found at i:14775060 original size:57 final size:57
Alignment explanation
Indices: 14774992--14775108 Score: 207
Period size: 57 Copynumber: 2.1 Consensus size: 57
14774982 AGATAGCAGA
14774992 TTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTG
1 TTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTG
** *
14775049 TTTGGCCTCTCTGTATTGGTGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTG
1 TTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTG
14775106 TTT
1 TTT
14775109 TGGCAGAGAG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (57 bp):
TTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTG
Found at i:14775104 original size:44 final size:44
Alignment explanation
Indices: 14775049--14775243 Score: 309
Period size: 44 Copynumber: 4.4 Consensus size: 44
14775039 GGCCTCTCTG
* **
14775049 TTTGGCCTCTCTGTATTGGTGGAGAGCAGATCGAAGATAGCAGA
1 TTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGA
*
14775093 TTTGGCGTCTCTGTTTTGGCAGAGAGCAGATCGAAGATAGCAGA
1 TTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGA
* *
14775137 TTTGGCGTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCAGA
1 TTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGA
* * *
14775181 TTTGGCGTCTTTGTATTGGCGGAGAGCAGATCGAAGATAGCATA
1 TTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGA
14775225 TTTGGCGTCTCTGTATTGG
1 TTTGGCGTCTCTGTATTGG
14775244 ATTTGGCGTC
Statistics
Matches: 138, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 138 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (44 bp):
TTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGA
Found at i:14775167 original size:145 final size:145
Alignment explanation
Indices: 14774904--14775200 Score: 495
Period size: 145 Copynumber: 2.0 Consensus size: 145
14774894 ACCAGACAGA
*
14774904 TTTGGCGTCTCTGTAGTGATGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATTGGCA
1 TTTGGCCTCTCTGTAGTGATGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATTGGCA
* *
14774969 GAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
66 GAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCA
14775034 GATTTGGCCTCTCTG
131 GATTTGGCCTCTCTG
* * * *
14775049 TTTGGCCTCTCTGTATTGGTGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTTTTGGCA
1 TTTGGCCTCTCTGTAGTGATGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATTGGCA
*
14775114 GAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCA
66 GAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCA
* *
14775179 GATTTGGCGTCTTTG
131 GATTTGGCCTCTCTG
14775194 TATTGGC
1 T-TTGGC
14775201 GGAGAGCAGA
Statistics
Matches: 141, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
145 136 0.96
146 5 0.04
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (145 bp):
TTTGGCCTCTCTGTAGTGATGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATTGGCA
GAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCA
GATTTGGCCTCTCTG
Found at i:14775220 original size:189 final size:194
Alignment explanation
Indices: 14774900--14775337 Score: 679
Period size: 189 Copynumber: 2.3 Consensus size: 194
14774890 CAAGACCAGA
* **
14774900 CAGATTTGGCGTCTCTGTAGTGATGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATT
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATT
* *
14774965 GGCAGAGAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGAT
66 AGCAGAAAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGAT
**
14775030 AGCAGATTTGGC-CTC-T-CT-G-TTTGGCCTCTCTGTATTGGTGGAGAGCAGATCGAAGATAG
131 AGCAGATTTGGCGCTCGTACTGGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* * *
14775089 CAGATTTGGCGTCTCTGTTTTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATT
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATT
* * *
14775154 AGCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGGCGGAGAGCAGATCGAAGAT
66 AGCAGAAAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGAT
* * *
14775219 AGCATATTTGGCGTCTCTGTATTGGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
131 AGCAGATTTGGCG-CTC-GTACTGGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
14775284 G
194 G
14775285 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGG
14775338 TGTTCCTGAG
Statistics
Matches: 224, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
189 130 0.58
191 3 0.01
193 1 0.00
194 1 0.00
195 1 0.00
196 88 0.39
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (194 bp):
CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTATGTATT
AGCAGAAAGCAGATCGAAGATAGCAGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGAT
AGCAGATTTGGCGCTCGTACTGGATTTGGCCTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
Found at i:14775249 original size:20 final size:20
Alignment explanation
Indices: 14775224--14775263 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14775214 AAGATAGCAT
14775224 ATTTGGCGTCTCTGTATTGG
1 ATTTGGCGTCTCTGTATTGG
14775244 ATTTGGCGTCTCTGTATTGG
1 ATTTGGCGTCTCTGTATTGG
14775264 CAGAGAGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.30, T:0.45
Consensus pattern (20 bp):
ATTTGGCGTCTCTGTATTGG
Found at i:14775260 original size:64 final size:64
Alignment explanation
Indices: 14775179--14775307 Score: 231
Period size: 64 Copynumber: 2.0 Consensus size: 64
14775169 GAAGATAGCA
* * *
14775179 GATTTGGCGTCTTTGTATTGGCGGAGAGCAGATCGAAGATAGCATATTTGGCGTCTCTGTATTG
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
14775243 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
14775307 G
1 G
14775308 CGGAGAGCAG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.33
Consensus pattern (64 bp):
GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
Found at i:14775274 original size:108 final size:108
Alignment explanation
Indices: 14775135--14775337 Score: 370
Period size: 108 Copynumber: 1.9 Consensus size: 108
14775125 GAAGATAGCA
*
14775135 GATTTGGCGTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGG
1 GATTTGGCGTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGG
*
14775200 CGGAGAGCAGATCGAAGATAGCATATTTGGCGTCTCTGTATTG
66 CGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
14775243 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCGTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGG
14775308 CGGAGAGCAGATCGAAGATAGCAGATTTGG
66 CGGAGAGCAGATCGAAGATAGCAGATTTGG
14775338 TGTTCCTGAG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 91 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.29
Consensus pattern (108 bp):
GATTTGGCGTCTCTGTATTAGCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGG
CGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
Found at i:14775306 original size:44 final size:44
Alignment explanation
Indices: 14775243--14775337 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
14775233 CTCTGTATTG
14775243 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
14775287 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
14775331 GATTTGG
1 GATTTGG
14775338 TGTTCCTGAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
Found at i:14776608 original size:41 final size:41
Alignment explanation
Indices: 14776549--14776675 Score: 121
Period size: 41 Copynumber: 3.1 Consensus size: 41
14776539 CAAAAATTTT
*
14776549 AAAACACAGAGCAATAGCGCCG-TTTTACCAAAAAAGCCGCTA
1 AAAAC-CAGAGCATTAGCGCCGCTTTT-CCAAAAAAGCCGCTA
* * *** *
14776591 AAAACCATAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGCCGCTTTTCCAAAAAAGCCGCTA
* *** *
14776632 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGCCGCTTTTCCAAAAAAGCCGCTA
14776673 AAA
1 AAA
14776676 GTCATATAAC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
41 67 0.88
42 9 0.12
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.18
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGCCGCTTTTCCAAAAAAGCCGCTA
Found at i:14776855 original size:14 final size:14
Alignment explanation
Indices: 14776833--14776884 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
14776823 TTAAATATCA
*
14776833 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
14776847 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
14776861 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
14776875 TTAAGGTTTA
1 TTATGGTTTA
14776885 TGAGTTAACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:14776886 original size:21 final size:21
Alignment explanation
Indices: 14776838--14776886 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
14776828 TATCATTATA
* *
14776838 GTTTAAGGTTTATGGTTTAAG
1 GTTTATGGTTTAGGGTTTAAG
* *
14776859 ATATATGGTTTAGGGTTTAAG
1 GTTTATGGTTTAGGGTTTAAG
14776880 GTTTATG
1 GTTTATG
14776887 AGTTAACTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (21 bp):
GTTTATGGTTTAGGGTTTAAG
Found at i:14776904 original size:32 final size:32
Alignment explanation
Indices: 14776862--14776927 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
14776852 GTTTAAGATA
* *
14776862 TATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGCTTAGGGTTTAAGGTTTAGGAGTTAAC
14776894 TATGGCTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGCTTAGGGTTTAAGGTTTAGGAGTTAAC
14776926 TA
1 TA
14776928 GTATTTGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.26, C:0.05, G:0.29, T:0.41
Consensus pattern (32 bp):
TATGGCTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:14776983 original size:7 final size:7
Alignment explanation
Indices: 14776954--14777050 Score: 56
Period size: 7 Copynumber: 14.0 Consensus size: 7
14776944 GATGAATTAT
14776954 GGGTTTA
1 GGGTTTA
*
14776961 GGGATTA
1 GGGTTTA
* *
14776968 TGATTTA
1 GGGTTTA
14776975 GGGTTTA
1 GGGTTTA
*
14776982 GGGGTTA
1 GGGTTTA
14776989 GGG-TT-
1 GGGTTTA
14776994 GGAGTTTA
1 GG-GTTTA
** *
14777002 ATGTGTAA
1 GGGT-TTA
*
14777010 GGGTTTG
1 GGGTTTA
*
14777017 GGGTTAA
1 GGGTTTA
*
14777024 GGG-TAA
1 GGGTTTA
14777030 GGGTTTA
1 GGGTTTA
14777037 GGGTTTA
1 GGGTTTA
*
14777044 GTGTTTA
1 GGGTTTA
14777051 TGGGATAAAG
Statistics
Matches: 67, Mismatches: 18, Indels: 10
0.71 0.19 0.11
Matches are distributed among these distances:
5 2 0.03
6 9 0.13
7 52 0.78
8 4 0.06
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:14778048 original size:37 final size:37
Alignment explanation
Indices: 14777983--14778091 Score: 148
Period size: 37 Copynumber: 2.9 Consensus size: 37
14777973 TGATCAGGAA
* *
14777983 AACCCATCTCCTCCGTCGCCTTCTCCCCGTGCATCGC
1 AACCCATCTCCTCCATCGCCTTCACCCCGTGCATCGC
* *
14778020 AACTCAT-TCCCTCCATCGTCTTCACCCCGTGCATCGC
1 AACCCATCT-CCTCCATCGCCTTCACCCCGTGCATCGC
* *
14778057 AACCCATCTCCTCCATCGCCTTCGCCCTGTGCATC
1 AACCCATCTCCTCCATCGCCTTCACCCCGTGCATC
14778092 TGCTGCATAG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
36 1 0.02
37 60 0.97
38 1 0.02
ACGTcount: A:0.14, C:0.49, G:0.12, T:0.26
Consensus pattern (37 bp):
AACCCATCTCCTCCATCGCCTTCACCCCGTGCATCGC
Found at i:14785603 original size:12 final size:12
Alignment explanation
Indices: 14785583--14785620 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
14785573 ACTTCATGTA
14785583 TAATA-CAAAAT
1 TAATACCAAAAT
14785594 TAATACCAAAAT
1 TAATACCAAAAT
*
14785606 TAACACCAAAAT
1 TAATACCAAAAT
14785618 TAA
1 TAA
14785621 CAAAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
TAATACCAAAAT
Found at i:14785621 original size:12 final size:12
Alignment explanation
Indices: 14785588--14785622 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
14785578 ATGTATAATA
*
14785588 CAAAATTAATAC
1 CAAAATTAACAC
14785600 CAAAATTAACAC
1 CAAAATTAACAC
14785612 CAAAATTAACA
1 CAAAATTAACA
14785623 AAAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (12 bp):
CAAAATTAACAC
Found at i:14797255 original size:24 final size:24
Alignment explanation
Indices: 14797219--14797266 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
14797209 CTAATAAATG
*
14797219 TAAATATAAATTAT-ACTTATTTT
1 TAAATATAAATTATCACATATTTT
*
14797242 TAAATTTATAATTATCACATATTTT
1 TAAATATA-AATTATCACATATTTT
14797267 ATTTTACTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
TAAATATAAATTATCACATATTTT
Found at i:14801707 original size:23 final size:23
Alignment explanation
Indices: 14801648--14801709 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
14801638 TGCACATAGT
*
14801648 ATATATACA-CATATATAAAAAA
1 ATATAAACATCATATATAAAAAA
* * *
14801670 ATGTATACATAATATAT-AAAAA
1 ATATAAACATCATATATAAAAAA
14801692 ATATAAACATGCATATAT
1 ATATAAACAT-CATATAT
14801710 TATTTAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (23 bp):
ATATAAACATCATATATAAAAAA
Found at i:14803555 original size:43 final size:45
Alignment explanation
Indices: 14803500--14803622 Score: 153
Period size: 43 Copynumber: 2.8 Consensus size: 45
14803490 ACATTTGATT
14803500 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAAT-
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATC
* * * * *
14803544 TT-GGCTTGTTACCCTACTGCTTA-GGGTGATAAGATCTGTAGATC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGT-TTAAGGTCTGTAAATC
* *
14803588 TTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGG
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
14803623 CTTGGTGGTT
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 4 0.06
43 31 0.48
44 4 0.06
45 22 0.34
46 3 0.05
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (45 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATC
Found at i:14815375 original size:19 final size:22
Alignment explanation
Indices: 14815333--14815375 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
14815323 TTAAAGTACA
14815333 ATTATTTTATAAAATAAATCAT
1 ATTATTTTATAAAATAAATCAT
14815355 ATTATTTTA-AAAA-AAAT-AT
1 ATTATTTTATAAAATAAATCAT
14815374 AT
1 AT
14815376 GATAAACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 4 0.19
21 4 0.19
22 9 0.43
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTATTTTATAAAATAAATCAT
Found at i:14817918 original size:75 final size:75
Alignment explanation
Indices: 14817795--14817941 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 75
14817785 ACAATCCATG
* *
14817795 TTACATTCCCAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATGTTTAGGAT
1 TTACATTCCAAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
14817860 TTAGTTCTTA
66 TTAGTTCTTA
* *
14817870 TTACATTCTAAATTACTTAGATCCAATTATGTCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
1 TTACATTCCAAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
14817935 TTAGTTC
66 TTAGTTC
14817942 CTATAATTTG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (75 bp):
TTACATTCCAAATTACTTAGATCCAATTATGGCTTTGATCCCTCTGCAATGCTCATATTTAGGAT
TTAGTTCTTA
Found at i:14821504 original size:22 final size:22
Alignment explanation
Indices: 14821461--14821504 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14821451 TTTTTCACTT
**
14821461 TCCATAACATTTAAAATTGTCA
1 TCCATAACATTTAAAAGCGTCA
*
14821483 TCCATAACATTTCAAAGCGTCA
1 TCCATAACATTTAAAAGCGTCA
14821505 CAAAAACCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.32
Consensus pattern (22 bp):
TCCATAACATTTAAAAGCGTCA
Found at i:14823502 original size:22 final size:22
Alignment explanation
Indices: 14823460--14823503 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14823450 ATAAAATGTA
**
14823460 AAATAAATTTTAAAACGATAAT
1 AAATAAATTTTAAAAAAATAAT
14823482 AAATAAA-TTTAAAATAAATAAT
1 AAATAAATTTTAAAA-AAATAAT
14823504 GTGAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (22 bp):
AAATAAATTTTAAAAAAATAAT
Found at i:14823561 original size:29 final size:27
Alignment explanation
Indices: 14823486--14823591 Score: 78
Period size: 27 Copynumber: 3.9 Consensus size: 27
14823476 GATAATAAAT
* *
14823486 AAATTT-AAAATAAATAATGTGAAAAAG
1 AAATTTAAAAATAAGTAATGT-ACAAAG
* *
14823513 AAATTT-AATATCAA-CAATGTACAAA-
1 AAATTTAAAAAT-AAGTAATGTACAAAG
14823538 ACAATTTAAAAATAGAGTATATGTA-AAAG
1 A-AATTTAAAAATA-AGTA-ATGTACAAAG
* *
14823567 AAATTTTAAAATAAGTAATATACAA
1 AAATTTAAAAATAAGTAATGTACAA
14823592 GATATCAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
25 1 0.02
26 14 0.22
27 26 0.41
28 17 0.27
29 6 0.09
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTTAAAAATAAGTAATGTACAAAG
Found at i:14825303 original size:27 final size:26
Alignment explanation
Indices: 14825245--14825382 Score: 168
Period size: 27 Copynumber: 5.1 Consensus size: 26
14825235 TGGCTGCCAA
* *
14825245 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
14825271 ATACAGATAATCGTGGCAGAGCCACCAG
1 A-ACAGATAAT-GTGGCAGAGCCACCAG
14825299 AACAGATATATGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* *
14825326 ATCAGATATTTGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* * *
14825353 ATCAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
14825380 AAC
1 AAC
14825383 GCTTCCTCCA
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
26 1 0.01
27 85 0.83
28 17 0.17
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:14827029 original size:26 final size:26
Alignment explanation
Indices: 14826993--14827102 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
14826983 CATGAAATTC
14826993 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
14827019 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
14827045 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
14827071 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
14827097 TTATCA
1 TTATCA
14827103 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:14827662 original size:130 final size:130
Alignment explanation
Indices: 14827429--14827759 Score: 415
Period size: 130 Copynumber: 2.6 Consensus size: 130
14827419 TTACAATCAA
* * * * *
14827429 AACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATCGGACATTACCTT-ATTTT-A-
1 AACCCAGCACGA-TAGGGCACGATTCCCCGAATTACCA-ACATCGAACATTACCTTCGTTTTAAG
* * * *
14827490 GA-ATTTAAAGAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATAGGAAATC
64 GATTTTTAAAGAACATGAGCGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATC
14827554 GC
129 GC
*
14827556 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAACATCGAACATTACCTTCGTTTTGAAGG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTACCAACATCGAACATTACCTTCGTTTT-AAGG
*
14827621 ATTTTTAAAG-ACATGAGCGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACAGGAAATCG
65 ATTTTTAAAGAACATGAGCGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCG
14827685 C
130 C
* * ** *
14827686 AACCCAACACGATAGGGCACGATT-CCCAAATTACCAAACATCGAGTATTGCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTACC-AACATCGAACATTACCTTCGTTTT-AAG
*
14827750 AATTTTTAAA
64 GATTTTTAAA
14827760 TGAATAATTA
Statistics
Matches: 179, Mismatches: 18, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
126 16 0.09
127 36 0.20
128 1 0.01
129 10 0.06
130 109 0.61
131 7 0.04
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (130 bp):
AACCCAGCACGATAGGGCACGATTCCCCGAATTACCAACATCGAACATTACCTTCGTTTTAAGGA
TTTTTAAAGAACATGAGCGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGC
Found at i:14830222 original size:28 final size:27
Alignment explanation
Indices: 14830160--14830222 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
14830150 AGAGTTTAAC
14830160 ATAAGATATATAAAACAATTTTAAAATA
1 ATAA-ATATATAAAACAATTTTAAAATA
**
14830188 A-ATAATATATAAGTCAATTTTAAAAATA
1 ATA-AATATATAAAACAATTTT-AAAATA
14830216 ATAAATA
1 ATAAATA
14830223 AGAATCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 16 0.53
28 13 0.43
29 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (27 bp):
ATAAATATATAAAACAATTTTAAAATA
Found at i:14830506 original size:21 final size:22
Alignment explanation
Indices: 14830482--14830522 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14830472 GTAAACAGCC
*
14830482 TATAAAATA-TTTAAAATAACA
1 TATAAAACATTTTAAAATAACA
14830503 TATAAAACATTTTAAAATAA
1 TATAAAACATTTTAAAATAA
14830523 ATAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (22 bp):
TATAAAACATTTTAAAATAACA
Found at i:14831375 original size:14 final size:14
Alignment explanation
Indices: 14831356--14831389 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
14831346 GATTTGTGTC
14831356 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
14831370 AT-AAAATAAAAAA
1 ATAAAAATAAAAAA
*
14831383 AGAAAAA
1 ATAAAAA
14831390 AATGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (14 bp):
ATAAAAATAAAAAA
Found at i:14831662 original size:51 final size:50
Alignment explanation
Indices: 14831607--14831948 Score: 211
Period size: 51 Copynumber: 7.1 Consensus size: 50
14831597 AGTTATAGTA
* *
14831607 GAGTAGATCAAAGCTACAGATTACAAATCTTATCTCCTTGAAATTGCAGTG
1 GAGTAGAT-AAAGCTACAGATTACAAATCTTATCTCCCTGAAGTTGCAGTG
* * * *
14831658 GAGTAGGT--TG--A-AG-TTACTAGTCTTATCTCCCTGAAGTTGCAGTG
1 GAGTAGATAAAGCTACAGATTACAAATCTTATCTCCCTGAAGTTGCAGTG
* * * * * *
14831702 GAGCAGATTGAAGTTACAAATCA-AAACCTTATCTCCCTGAAGTTGCAGTG
1 GAGTAGA-TAAAGCTACAGATTACAAATCTTATCTCCCTGAAGTTGCAGTG
* * * * * *
14831752 GAGCAGACTGAAGTTACA-AATACCAAACCTTATCTCCCTGAAGTTGCACTG
1 GAGTAGA-TAAAGCTACAGATTA-CAAATCTTATCTCCCTGAAGTTGCAGTG
* * * *
14831803 GAGTAGGT--TG--A-AG-TTACTAGTCTTATCTCCCTGAAGTTGCAGTG
1 GAGTAGATAAAGCTACAGATTACAAATCTTATCTCCCTGAAGTTGCAGTG
* * * * * *
14831847 G-G--GA-AGA-CTACA-AATAGCAGATCTTATCTCTCTGAAGTTACAGTA
1 GAGTAGATAAAGCTACAGATTA-CAAATCTTATCTCCCTGAAGTTGCAGTG
* * *
14831892 GAGTAGATCAAAGCTACATATTACAAATGTTATCTCCCTAAAGTTGCAGTG
1 GAGTAGAT-AAAGCTACAGATTACAAATCTTATCTCCCTGAAGTTGCAGTG
14831943 GAGTAG
1 GAGTAG
14831949 GTTAAAGTCA
Statistics
Matches: 224, Mismatches: 43, Indels: 48
0.71 0.14 0.15
Matches are distributed among these distances:
41 1 0.00
43 2 0.01
44 60 0.27
45 29 0.13
46 3 0.01
47 1 0.00
48 4 0.02
49 3 0.01
50 45 0.20
51 73 0.33
52 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (50 bp):
GAGTAGATAAAGCTACAGATTACAAATCTTATCTCCCTGAAGTTGCAGTG
Found at i:14831698 original size:44 final size:44
Alignment explanation
Indices: 14831634--14832173 Score: 262
Period size: 44 Copynumber: 11.8 Consensus size: 44
14831624 AGATTACAAA
* * * *
14831634 TCTTATCTCCTTGAAATTGCAGTGGAGTAGGTTGAAGTTACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAG
*
14831678 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCAAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC---T---AG
* * *
14831728 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTACAAATACCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC---T----AG
* * * *
14831779 CCTTATCTCCCTGAAGTTGCACTGGAGTAGGTTGAAGTTACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAG
* * * **
14831823 TCTTATCTCCCTGAAGTTGCAGTGGGGAAGACT-ACAAATAGC-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGTTA-CTAG
* * * * ** * *
14831867 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAAGCTACATAT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-TAG
* * * * *
14831913 TACAAATGTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTAAAGTCACTAG
1 T-C-----TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAG
* ** * * * *
14831963 TCTTATCTCCCTGAAGTTACAACGGAGCAGA-TCAA-ATACGGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA---CTAG
* * * * * ***
14832008 TCTTATTTTCTTGAAGTTGCAGCGAAGCAGATTGAAACCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAG
* * * * *
14832052 TCTTATCTCCCTAAAGTTGAAATGGAGCAGGTTAAAGTTA-TAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACT-AG
* * * * * *
14832096 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTCAAGATAGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CTAG
* * *
14832141 TCTTATCTCTCGGAAGTTGCAGTAGAGCAGATT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
14832174 AAAGCTATAA
Statistics
Matches: 379, Mismatches: 90, Indels: 53
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.00
43 5 0.01
44 157 0.41
45 87 0.23
46 6 0.02
47 2 0.01
48 1 0.00
49 1 0.00
50 47 0.12
51 72 0.19
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACTAG
Found at i:14831754 original size:50 final size:51
Alignment explanation
Indices: 14831679--14831819 Score: 230
Period size: 50 Copynumber: 2.8 Consensus size: 51
14831669 AGTTACTAGT
14831679 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT-CAAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATACAAAAC
* *
14831729 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTACAAATACCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATACAAAAC
* * *
14831780 CTTATCTCCCTGAAGTTGCACTGGAGTAGGTTGAAGTTAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
14831820 TAGTCTTATC
Statistics
Matches: 84, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 43 0.51
51 41 0.49
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (51 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATACAAAAC
Found at i:14831962 original size:140 final size:140
Alignment explanation
Indices: 14831495--14832180 Score: 640
Period size: 140 Copynumber: 4.9 Consensus size: 140
14831485 ATCCATAAAC
* * *
14831495 CTTATCTCCCTGAAGTTACATTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAG
* * * ** *
14831560 TGGGGCAGACTACAAATAGCAGATCTTATCTCTTTAAAGTTATAGTAGAGTAGATCAAAGCTACA
66 TGGGGAAGACTACAAATAGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCTACA
*
14831625 GATTACAAAT
131 TATTACAAAT
*
14831635 CTTATCTCCTTGAAA-TTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCT-AAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCA
* * * * * *
14831699 GTGGAGCAGATTGAAGTTACAAAT--CAAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CT
65 GTGG-G--GA-AG-A-CTACAAATAGC-AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-
* * * *
14831761 GAAGTTACA-AATACCAAAC
122 AAAGCTACATATTA-CAAAT
* *
14831780 CTTATCTCCCTGAAGTTGCACTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAG
* *
14831845 TGGGGAAGACTACAAATAGCAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAAGCTACA
66 TGGGGAAGACTACAAATAGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCTACA
14831910 TATTACAAAT
131 TATTACAAAT
* * * * *
14831920 GTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTAAAGTCACTAGTCTTATCTCCCTGAAGTTACAA
1 CTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAG
* * * * * *
14831985 CGGAGCAGA-T-CAAATACGGC-GAATCTTAT-TTTCTTGAAGTTGCAG-CGAAGCAGATTGAAA
66 TGGGGAAGACTACAAATA--GCAG-ATCTTATCTCTC-TGAAGTTGCAGTAG-AGCAGA-TCAAA
* *
14832045 -C--C-----ACTAGT
125 GCTACATATTACAAAT
* * * *
14832053 CTTATCTCCCTAAAGTTGAAATGGAGCAGGTTAAAGTTA-TAAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTACT-AGTCTTATCTCCCTGAAGTTGCA
* * * *
14832117 GTGGAGTAGACT-CAAGATAGC-GAATCTTATCTCTCGGAAGTTGCAGTAGAGCAGATTAAAGCT
65 GTGGGGAAGACTACAA-ATAGCAG-ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCT
14832180 A
128 A
14832181 TAAATCCTAT
Statistics
Matches: 452, Mismatches: 65, Indels: 63
0.78 0.11 0.11
Matches are distributed among these distances:
132 5 0.01
133 95 0.21
134 8 0.02
135 3 0.01
138 7 0.02
139 13 0.03
140 190 0.42
141 13 0.03
142 2 0.00
143 1 0.00
144 9 0.02
145 99 0.22
146 7 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (140 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAG
TGGGGAAGACTACAAATAGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAGCTACA
TATTACAAAT
Found at i:14832558 original size:233 final size:234
Alignment explanation
Indices: 14832053--14832619 Score: 582
Period size: 233 Copynumber: 2.5 Consensus size: 234
14832043 AACCACTAGT
* * * * * * * * * *
14832053 CTTATCTCCCTAAAGTTGA-AATGGAGCAGGTTAAAGTTATAAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTT-ACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACA
* * * * * * ** *
14832117 GTGGAGTAGACTCAAGATAGCGAATCTTATCTCTCGGAAGTTGCAGTAGAGCAGATTAAAGCT--
65 GTGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTGGAATAGGTTAAAGCTAC
* *
14832180 -A--TA-AA-TCCTATACCTCTGAAGTTGCAGCAGATCGGATCAAATCTACCATGATGAATCTTG
130 GAGTTACAAGTCCTATACCTCTGAAGTCGCAGCAGATCGGATCAAATCTACCATGATGAATCTTA
* * *
14832240 TCTCTCTGAAGTTGCAGTGGAATAGATCGAAGCCACTAAC
195 TCTCCCTAAAATTGCAGTGGAATAGATCGAAGCCACTAAC
* * *
14832280 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTTACAAGTCTTAGCCCCCCGAAATTACAG
1 CTTATCTCCCTGAAGTTACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACAG
* * *
14832345 TAGG-GTAGACTGAATATAGTAAATCTTAT-TTTCCTGAAGTTGCAGTGGAATAGGTTAAAGCTA
66 T-GGAATAGACTGAATATAGCAAATCTTATCTCT-CTGAAGTTGCAGTGGAATAGGTTAAAGCTA
** * * * *
14832408 CGAGTTACAAGTCCTATACCTCTGAAGTCGCAGTGGGTCGGATCAAATCTATCATGGTGAATTTT
129 CGAGTTACAAGTCCTATACCTCTGAAGTCGCAGCAGATCGGATCAAATCTACCATGATGAATCTT
* * * * *
14832473 ATCTCCCTAAAATTTCA-TGGAGTAGAT-GTAGGTCATTAAC
194 ATCTCCCTAAAATTGCAGTGGAATAGATCG-AAGCCACTAAC
* * * * * * *
14832513 CTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGATGCAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACAG
14832578 TGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTG
66 TGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTG
14832620 TAGTAGAGTA
Statistics
Matches: 277, Mismatches: 50, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
226 2 0.01
227 99 0.36
228 2 0.01
230 1 0.00
232 5 0.02
233 107 0.39
234 61 0.22
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (234 bp):
CTTATCTCCCTGAAGTTACAATAGAGCAGGTTGAAGATACAAGTCTTAGCCCCCCGAAATTACAG
TGGAATAGACTGAATATAGCAAATCTTATCTCTCTGAAGTTGCAGTGGAATAGGTTAAAGCTACG
AGTTACAAGTCCTATACCTCTGAAGTCGCAGCAGATCGGATCAAATCTACCATGATGAATCTTAT
CTCCCTAAAATTGCAGTGGAATAGATCGAAGCCACTAAC
Found at i:14832561 original size:44 final size:45
Alignment explanation
Indices: 14832513--14832618 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 45
14832503 GGTCATTAAC
* ** *
14832513 CTTATCTCCCTGAAGTTACAATGGAGCAGGTTGAAGAT-GCAAGT
1 CTTATCTCCCTGAAGTTACAATGGAACAGACTGAAGATAGCAAAT
* * * *
14832557 CTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAATATAGCAAAT
1 CTTATCTCCCTGAAGTTACAATGGAACAGACTGAAGATAGCAAAT
*
14832602 CTTATCTCTCTGAAGTT
1 CTTATCTCCCTGAAGTT
14832619 GTAGTAGAGT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
44 31 0.60
45 21 0.40
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTACAATGGAACAGACTGAAGATAGCAAAT
Found at i:14833085 original size:38 final size:38
Alignment explanation
Indices: 14833037--14833115 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
14833027 GGATACCCTT
14833037 CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
1 CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
*
14833075 CTTTCTATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
1 CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
14833113 CTT
1 CTT
14833116 CATTGCCGCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (38 bp):
CTTTCCATTTTCTTTTCTCTGCTAGGGTTAGGAGAACC
Found at i:14833875 original size:19 final size:20
Alignment explanation
Indices: 14833837--14833877 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
14833827 GGACTTTTTA
*
14833837 TTATTTGGGCTTTTAATTGT
1 TTATTTGGGCATTTAATTGT
*
14833857 TTATTTGGG-ATTTAGTTGT
1 TTATTTGGGCATTTAATTGT
14833876 TT
1 TT
14833878 GGGCCAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.15, C:0.02, G:0.22, T:0.61
Consensus pattern (20 bp):
TTATTTGGGCATTTAATTGT
Found at i:14834208 original size:45 final size:44
Alignment explanation
Indices: 14834149--14834314 Score: 158
Period size: 44 Copynumber: 3.8 Consensus size: 44
14834139 GGTTTGTGGC
* * *
14834149 TTCAATCTGTTCTACTGCAACTTCAGAGAGATAAGATTTGCTATA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTG-TATA
* *
14834194 TTCAATCTGCTCTACTGCAACTTAAGGGAGATAAGACTTGTATC
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTATA
* * * * *
14834238 TTCAACCTGCTCCATTGTAACTTCAGGGAGATAAGGCTAATGGT-T-
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACT--T-GTATA
* * *
14834283 TTC-ATCTACTCCACTGCAATTTCAGGGAGATA
1 TTCAATCTGCTCTACTGCAACTTCAGGGAGATA
14834315 TAATTTGCCA
Statistics
Matches: 102, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
44 59 0.58
45 39 0.38
46 2 0.02
47 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
TTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTATA
Found at i:14837335 original size:46 final size:46
Alignment explanation
Indices: 14837268--14837752 Score: 691
Period size: 46 Copynumber: 10.7 Consensus size: 46
14837258 TGGCAACCTG
14837268 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
14837314 TGTGTAAGACCATGGTCGAAAGATGCCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14837352 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
**
14837398 TGTGTAAGATAATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14837444 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14837490 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14837536 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14837582 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * *
14837628 TATGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
14837674 AGAATAAGACCATGGTTGAAAAATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
14837720 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
14837753 TCACGTCAAA
Statistics
Matches: 402, Mismatches: 28, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
38 34 0.08
41 2 0.00
43 2 0.00
45 1 0.00
46 363 0.90
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:14840700 original size:11 final size:11
Alignment explanation
Indices: 14840686--14840730 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
14840676 AGGTAAATAT
14840686 TATTTTATTAA
1 TATTTTATTAA
*
14840697 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
14840710 TATTTTATTAT
1 TATTTTATTAA
14840721 TATTTTATTA
1 TATTTTATTA
14840731 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14842975 original size:46 final size:46
Alignment explanation
Indices: 14842908--14843392 Score: 691
Period size: 46 Copynumber: 10.7 Consensus size: 46
14842898 TGGCAACCTG
14842908 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
14842954 TGTGTAAGACCATGGTCGAAAGATGCCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14842992 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
**
14843038 TGTGTAAGATAATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14843084 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14843130 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14843176 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14843222 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * *
14843268 TATGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
14843314 AGAATAAGACCATGGTTGAAAAATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
14843360 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
14843393 TCACGTCAAA
Statistics
Matches: 402, Mismatches: 28, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
38 34 0.08
41 2 0.00
43 2 0.00
45 1 0.00
46 363 0.90
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:14846340 original size:11 final size:11
Alignment explanation
Indices: 14846326--14846370 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
14846316 AGGTAAATAT
14846326 TATTTTATTAA
1 TATTTTATTAA
*
14846337 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
14846350 TATTTTATTAT
1 TATTTTATTAA
14846361 TATTTTATTA
1 TATTTTATTA
14846371 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14848614 original size:46 final size:46
Alignment explanation
Indices: 14848547--14849031 Score: 691
Period size: 46 Copynumber: 10.7 Consensus size: 46
14848537 TGGCAACCTG
14848547 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
14848593 TGTGTAAGACCATGGTCGAAAGATGCCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14848631 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
**
14848677 TGTGTAAGATAATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14848723 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14848769 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14848815 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14848861 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * *
14848907 TATGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
14848953 AGAATAAGACCATGGTTGAAAAATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
14848999 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
14849032 TCACGTCAAA
Statistics
Matches: 402, Mismatches: 28, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
38 34 0.08
41 2 0.00
43 2 0.00
45 1 0.00
46 363 0.90
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:14851975 original size:11 final size:11
Alignment explanation
Indices: 14851961--14852005 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
14851951 AGGTAAATAT
14851961 TATTTTATTAA
1 TATTTTATTAA
*
14851972 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
14851985 TATTTTATTAT
1 TATTTTATTAA
14851996 TATTTTATTA
1 TATTTTATTA
14852006 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14854187 original size:38 final size:38
Alignment explanation
Indices: 14854145--14854303 Score: 228
Period size: 38 Copynumber: 4.0 Consensus size: 38
14854135 TGATATGAAA
14854145 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
14854183 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
14854226 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ---TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
14854267 TGTGGAAGGCCATGGTTGAAAGATACCATGGCAACCT
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCT
14854304 AATTGAAAGA
Statistics
Matches: 111, Mismatches: 2, Indels: 16
0.86 0.02 0.12
Matches are distributed among these distances:
38 71 0.64
41 2 0.02
43 2 0.02
46 36 0.32
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (38 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:14854250 original size:46 final size:45
Alignment explanation
Indices: 14854183--14854311 Score: 182
Period size: 46 Copynumber: 3.0 Consensus size: 45
14854173 TGGCAACCTG
14854183 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT-TGAAA
14854229 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATTGAAA
* *
14854269 TG-G-AAGGCCATGGTTGAAAGATACCATGGCAACCTAATTGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATTGAAA
14854312 GATACCATGG
Statistics
Matches: 76, Mismatches: 2, Indels: 13
0.84 0.02 0.14
Matches are distributed among these distances:
38 31 0.41
39 1 0.01
40 4 0.05
43 2 0.03
46 38 0.50
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (45 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATTGAAA
Found at i:14854269 original size:84 final size:84
Alignment explanation
Indices: 14854134--14854311 Score: 322
Period size: 84 Copynumber: 2.1 Consensus size: 84
14854124 AGTGTGCTCT
*
14854134 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGGAAGACCATGGT
14854199 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
14854218 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGGAAGGCCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGGAAGACCATGGT
14854283 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
14854302 CTAAT-TGAAA
1 CTGATATGAAA
14854312 GATACCATGG
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
83 5 0.05
84 86 0.95
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGGAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:14854313 original size:62 final size:62
Alignment explanation
Indices: 14854244--14854374 Score: 226
Period size: 62 Copynumber: 2.1 Consensus size: 62
14854234 AAGACCATGG
*
14854244 TTGAAAGATACCATGGCAACCTGTGTGGAAGGCCATGGTTGAAAGATACCATGGCAACCTAA
1 TTGAAAGATACCATGGCAACCTGTGTGGAAGACCATGGTTGAAAGATACCATGGCAACCTAA
* *
14854306 TTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TTGAAAGATACCATGGCAACCTGTGTGGAAGACCATGGTTGAAAGATACCATGGCAACCTAA
14854368 TATGAAA
1 T-TGAAA
14854375 TGTGTAAGAC
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
62 60 0.92
63 5 0.08
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (62 bp):
TTGAAAGATACCATGGCAACCTGTGTGGAAGACCATGGTTGAAAGATACCATGGCAACCTAA
Found at i:14854337 original size:24 final size:24
Alignment explanation
Indices: 14854282--14854327 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
14854272 AAGGCCATGG
14854282 TTGAAAGATACCATGGCAACCTAA
1 TTGAAAGATACCATGGCAACCTAA
14854306 TTGAAAGATACCATGGCAACCT
1 TTGAAAGATACCATGGCAACCT
14854328 GTGTGTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (24 bp):
TTGAAAGATACCATGGCAACCTAA
Found at i:14854591 original size:46 final size:46
Alignment explanation
Indices: 14854329--14854579 Score: 369
Period size: 46 Copynumber: 5.5 Consensus size: 46
14854319 TGGCAACCTG
14854329 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
14854375 TGTGTAAGACCGTGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
14854421 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
14854467 TGTGTAAGACCATGGTTGAAAGATAACATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
14854513 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* *
14854559 TGAGTAAGACCATAGTTGAAA
1 TGTGTAAGACCATGGTTGAAA
14854580 AACACTATGG
Statistics
Matches: 189, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 188 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:14855620 original size:95 final size:95
Alignment explanation
Indices: 14855506--14855907 Score: 336
Period size: 95 Copynumber: 4.2 Consensus size: 95
14855496 TCTGCTCCGT
* *
14855506 TGCAACTTCAGGGAGATAAGACTAGTGACTTCAACCTACTCCACTGCAACTTCAGGGAGATAACA
1 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGA
* * *
14855571 TTTGTAATCTGTAGCTTTGATTTACTCTAC
66 TTTGTAATCTGTAGCTTTAATCTACTCCAC
* * * * ** * * *
14855601 TGTAACTTCAGAGAGATAAGATCT-GCT-ATTTGTAGTCTGCCCCACTGCAACTTCAGGGGGATA
1 TGCAACTTCAGGGAGATAAGA-CTAG-TAACTT-CAACCTACTCCACTGCAACTTCAGGGAGATA
* * * * *
14855664 AGACTAGTAA-----A--TTCAACCTACTCCAG
63 AGATTTGTAATCTGTAGCTTTAATCTACTCCAC
* * ** *
14855690 TGCAACTTCAGGGAGATAAGGTTTGGTATTTGTAACTTCAGTCTGCTCCACTGCAACTTCAGGGA
1 TGCAACTTCAGGGAGATAA------G-ACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGA
* * * * *
14855755 GATAAGGTTTGTGATTTGTAACTTTAATCTGCTCCAC
59 GATAAGATTTGTAATCTGTAGCTTTAATCTACTCCAC
*
14855792 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCTACTGCAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGA
* *
14855857 TTTGTAATCTGTAGCTTTGATCTACTCTAC
66 TTTGTAATCTGTAGCTTTAATCTACTCCAC
* * *
14855887 TGTAACTTTAGAGAGATAAGA
1 TGCAACTTCAGGGAGATAAGA
14855908 TCTTCTATTT
Statistics
Matches: 239, Mismatches: 49, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
89 26 0.11
91 1 0.00
95 140 0.59
96 41 0.17
100 1 0.00
102 30 0.13
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (95 bp):
TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGA
TTTGTAATCTGTAGCTTTAATCTACTCCAC
Found at i:14855664 original size:140 final size:140
Alignment explanation
Indices: 14855309--14856047 Score: 722
Period size: 140 Copynumber: 5.3 Consensus size: 140
14855299 ATAGGATTTA
* * * * * * * *
14855309 TAGCTTTAATCTGCTTTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTG-AGTCTACTCCAC
1 TAGCTTTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTAT-TTGTAGTCTGCCCCAC
* * *
14855373 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAG-
65 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGA
14855437 ---G----CTGG
130 TTTGTAATCT-G
* * * * * * *
14855442 T-GGTTTCAATCTGCT-TCGCTGCAACTTTAG-GAAAATAAGATAC-GCCGTATTTG-A-TCTGC
1 TAGCTTT-GATCTACTCT-ACTGTAACTTCAGAG-AGATAAGAT-CTG-C-TATTTGTAGTCTGC
* ** *
14855501 TCCGTTGCAACTTCAGGGAGATAAGACTAGTGACTTCAACCTACTCCACTGCAACTTCAGGGAGA
60 CCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGA
*
14855566 TAACATTTGTAATCTG
125 TAAGATTTGTAATCTG
*
14855582 TAGCTTTGATTTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACT
1 TAGCTTTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACT
* * * *
14855647 GCAACTTCAGGGGGATAAGACTAGTAAATTCAACCTACTCCAGTGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGAT
*
14855712 TTGGT-ATTTG
131 TT-GTAATCTG
* * * * * * * * *
14855722 TAAC-TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TGATTTGTAACTTTAATCT
1 TAGCTTTGA-TCTACTCTACTGTAACTTCAGAGAGATAAGATCTGCT-ATTTG------TAGTCT
* *
14855785 GCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCTACTGCAACTTCAGGGA
58 GCCCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGA
14855850 GATAAGATTTGTAATCTG
123 GATAAGATTTGTAATCTG
* * *
14855868 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTTTGCCCCACT
1 TAGCTTTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACT
*
14855933 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGAT
* *
14855998 TTGTGATTTG
131 TTGTAATCTG
* ** * * * *
14856008 TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TAGCTTTGATCTACTCTACTGTAACTTCAGAGAGATAAGA
14856048 CTAGTAACTT
Statistics
Matches: 502, Mismatches: 72, Indels: 57
0.80 0.11 0.09
Matches are distributed among these distances:
132 6 0.01
133 96 0.19
134 5 0.01
135 3 0.01
137 1 0.00
138 6 0.01
139 7 0.01
140 249 0.50
141 10 0.02
145 2 0.00
146 113 0.23
147 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (140 bp):
TAGCTTTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACT
GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGAT
TTGTAATCTG
Found at i:14855760 original size:51 final size:50
Alignment explanation
Indices: 14855670--14856096 Score: 326
Period size: 51 Copynumber: 8.9 Consensus size: 50
14855660 GATAAGACTA
* * * *
14855670 GTAAATTCAACCTACTCCAGTGCAACTTCAGGGAGATAAGGTTTGGTATTT
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTT-GTATTT
*
14855721 GTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTT
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGT-ATTT
* * *
14855772 GTAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-----G-ACTA
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTATTT
* * * * *
14855816 GTAACTTCAACCTACTCTACTGCAACTTCAGGGAGATAAGATTTGTAATCT
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGT-ATTT
* ** * * * * * * *
14855867 GTAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTT
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGT-TTGTATTT
* * * *
14855918 GT-A-GT---T-TGCCCCACTGCAACTTCAGGGAGATAA-----G-ACTA
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTATTT
* *
14855956 GTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTT
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGT-ATTT
* *
14856007 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-----G-ACTA
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTATTT
* * * *
14856051 GTAACTTCAACCTACTCCATTGCAATTTCAGGGAGATAAGGTTTGT
1 GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGT
14856097 GGATTCACCG
Statistics
Matches: 298, Mismatches: 50, Indels: 57
0.74 0.12 0.14
Matches are distributed among these distances:
38 4 0.01
39 1 0.00
40 1 0.00
44 99 0.33
45 21 0.07
46 3 0.01
49 4 0.01
50 2 0.01
51 160 0.54
52 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (50 bp):
GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTATTT
Found at i:14855834 original size:235 final size:233
Alignment explanation
Indices: 14855593--14856090 Score: 587
Period size: 235 Copynumber: 2.1 Consensus size: 233
14855583 AGCTTTGATT
* * *
14855593 TACTCTACTGTAACTTCAGAGAGATAAGATCTGCT-ATTTGTAG-TCTG-C-C-CCACTGCAACT
1 TACTCTACTGCAACTTCAGGGAGATAAGATCTG-TAATCTGTAGCTCTGACACTCCACTGCAACT
* * * * *
14855653 TCAGGGGGATAAGA-CTAGTAAATT-CAACCTACTCCAGTGCAACTTCAGGGAGATAAGGTTTGG
65 TCAGAGAGATAAGATCTACT-AATTGCAACCTACCCCACTGCAACTTCAGGGAGATAA------G
* * ** * *
14855716 TATTTGTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTTA
123 -ACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCA
14855781 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACC
187 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACC
* * * *
14855828 TACTCTACTGCAACTTCAGGGAGATAAGATTTGTAATCTGTAGCTTTGATCTACTCTACTGTAAC
1 TACTCTACTGCAACTTCAGGGAGATAAGATCTGTAATCTGTAGCTCTGA-C-ACTCCACTGCAAC
* * * * *** *
14855893 TTTAGAGAGATAAGATCTTCTATTTGTAGTTTGCCCCACTGCAACTTCAGGGAGATAAGACTAGT
64 TTCAGAGAGATAAGATCTACTAATTGCAACCTACCCCACTGCAACTTCAGGGAGATAAGACTAGT
14855958 AACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATCTGCT
129 AACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATCTGCT
14856023 CCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACC
194 CCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACC
* * *
14856063 TACTCCATTGCAATTTCAGGGAGATAAG
1 TACTCTACTGCAACTTCAGGGAGATAAG
14856091 GTTTGTGGAT
Statistics
Matches: 225, Mismatches: 29, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
234 1 0.00
235 167 0.74
236 4 0.02
238 1 0.00
240 1 0.00
241 23 0.10
242 28 0.12
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (233 bp):
TACTCTACTGCAACTTCAGGGAGATAAGATCTGTAATCTGTAGCTCTGACACTCCACTGCAACTT
CAGAGAGATAAGATCTACTAATTGCAACCTACCCCACTGCAACTTCAGGGAGATAAGACTAGTAA
CTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAATCTGCTCC
ACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACC
Found at i:14856009 original size:286 final size:280
Alignment explanation
Indices: 14855309--14856046 Score: 1017
Period size: 286 Copynumber: 2.6 Consensus size: 280
14855299 ATAGGATTTA
* * * * * *
14855309 TAGCTTTAATCTGCTTTACTGCAACTTTAGAGAGATAAGAT-TTGCTATCTTG-AGTCTACTCCA
1 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTT-CTAT-TTGTAGTCTGCCCCA
* * *
14855372 CTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAG
64 CTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAG
* * * * * * * *
14855437 G-CTGG--TGGT---TTCAATCTGCTTCGCTGCAACTTTAGGAAAATAA-GATACGCCGTATTTG
129 GTTTGGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGATACGCCGTATTTA
** *
14855495 ATCTGCTCCGTTGCAACTTCAGGGAGATAAGACTAGTGACTTCAACCTACTCCACTGCAACTTCA
194 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCA
14855560 GGGAGATAACATTTGTAATCTG
259 GGGAGATAACATTTGTAATCTG
* * *
14855582 TAGCTTTGATTTACTCTACTGTAACTTCAGAGAGATAAGATCTGCTATTTGTAGTCTGCCCCACT
1 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
* * *
14855647 GCAACTTCAGGGGGATAAGACTAGTAAATTCAACCTACTCCAGTGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGT
* * ** **
14855712 TTGGTATTTGTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAAC
131 TTGG-ATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGG-ATACG--CCGT-A-
*
14855777 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCTACTGCAAC
190 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
*
14855842 TTCAGGGAGATAAGATTTGTAATCTG
255 TTCAGGGAGATAACATTTGTAATCTG
*
14855868 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTTTGCCCCACT
1 TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
14855933 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGT
66 GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGT
14855998 TTGTGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
131 TTG-GATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
14856047 ACTAGTAACT
Statistics
Matches: 408, Mismatches: 41, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
272 3 0.01
273 109 0.27
274 4 0.01
277 3 0.01
280 28 0.07
281 1 0.00
282 2 0.00
284 2 0.00
285 1 0.00
286 254 0.62
287 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (280 bp):
TAGCTTTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTCTATTTGTAGTCTGCCCCACT
GCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGT
TTGGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGATACGCCGTATTTAAT
CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGG
GAGATAACATTTGTAATCTG
Found at i:14856048 original size:95 final size:95
Alignment explanation
Indices: 14855636--14856097 Score: 414
Period size: 95 Copynumber: 4.9 Consensus size: 95
14855626 CTATTTGTAG
* * * *
14855636 TCTGCCCCACTGCAACTTCAGGGGGATAAGACTAGTAAATTCAACCTACTCCAGTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAG
*
14855701 GGAGATAAGGTTTG-GTATTTGTAACTTCAG
66 GGAGATAAGGTTTGTG-ATTTGTAACTTCAA
* * * * *
14855731 TCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTTAATCTGCTCCACTGCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA-------GACTAGTAACTTCAACCTACTCCACTGCA
* *
14855796 ACTTCAGGGAGATAA-------GACTAGTAACTTCAA
59 ACTTCAGGGAGATAAGGTTTGTGATTTGTAACTTCAA
* * * * * * * * *
14855826 CCTACTCTACTGCAACTTCAGGGAGATAAGATTTGTAATCTGTAGCTTTGATCTACTCTACTGTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAA-CT-T--C---AACCTACTCCACTGCA
* * * * *
14855891 ACTTTAGAGAGATAAGATCTTCT-ATTTGT-A-GT---
59 ACTTCAGGGAGATAAGGT-TTGTGATTTGTAACTTCAA
*
14855923 T-TGCCCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAG
14855987 GGAGATAAGGTTTGTGATTTGTAACTTCAA
66 GGAGATAAGGTTTGTGATTTGTAACTTCAA
* *
14856017 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCATTGCAATTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAG
14856082 GGAGATAAGGTTTGTG
66 GGAGATAAGGTTTGTG
14856098 GATTCACCGA
Statistics
Matches: 295, Mismatches: 43, Indels: 58
0.74 0.11 0.15
Matches are distributed among these distances:
88 12 0.04
89 35 0.12
90 2 0.01
91 1 0.00
92 1 0.00
94 2 0.01
95 167 0.57
96 32 0.11
100 1 0.00
101 1 0.00
102 41 0.14
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (95 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAG
GGAGATAAGGTTTGTGATTTGTAACTTCAA
Found at i:14856213 original size:5 final size:5
Alignment explanation
Indices: 14856203--14856229 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14856193 ATTTTTTTGC
14856203 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
14856230 TATGACACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:14857102 original size:21 final size:22
Alignment explanation
Indices: 14857065--14857105 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14857055 ATTTATTTAT
*
14857065 TTATTTTAAAATGTTTTATATG
1 TTATTTTAAAATATTTTATATG
14857087 TTATTTT-AAATATTTTATA
1 TTATTTTAAAATATTTTATA
14857106 GGCTGTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (22 bp):
TTATTTTAAAATATTTTATATG
Found at i:14857432 original size:25 final size:26
Alignment explanation
Indices: 14857377--14857433 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
14857367 TTTATTATTT
*
14857377 TTAAAATTGACTTATATATTATTTATT
1 TTAAAATTGA-TTATATATTATTTATG
*
14857404 TTAAAATTG-TTTTATA-TATCTTATG
1 TTAAAATTGATTATATATTAT-TTATG
14857429 TTAAA
1 TTAAA
14857434 CTCTTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 3 0.11
25 15 0.56
27 9 0.33
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (26 bp):
TTAAAATTGATTATATATTATTTATG
Found at i:14857509 original size:25 final size:25
Alignment explanation
Indices: 14857458--14857515 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
14857448 TTAAAAATGG
***
14857458 TTTTAT-TATTATTTACTTTAGGTT
1 TTTTATATATTATTTACTTTACACT
*
14857482 TTTTATATATTATTTATTTTACACT
1 TTTTATATATTATTTACTTTACACT
14857507 TTTGTATAT
1 TTT-TATAT
14857516 GTATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 6 0.21
25 17 0.61
26 5 0.18
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (25 bp):
TTTTATATATTATTTACTTTACACT
Found at i:14857625 original size:52 final size:49
Alignment explanation
Indices: 14857569--14857666 Score: 115
Period size: 52 Copynumber: 1.9 Consensus size: 49
14857559 TTTTTAATTT
* * *
14857569 GCTTTGTGTAATATAGATTTTAAAATTCTTTTACATTATTTATTTTAAACTC
1 GCTTTATGTAATATACATTTT-AAATTCTTTT--ATTATTTACTTTAAACTC
* * *
14857621 GCTTTATGTATTATTCATTTTAAATTGTTTTATTATTTACTTTAAA
1 GCTTTATGTAATATACATTTTAAATTCTTTTATTATTTACTTTAAA
14857667 ATTTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 14 0.35
51 9 0.22
52 17 0.43
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (49 bp):
GCTTTATGTAATATACATTTTAAATTCTTTTATTATTTACTTTAAACTC
Found at i:14870051 original size:12 final size:12
Alignment explanation
Indices: 14870030--14870059 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14870020 CTACACTGGT
14870030 GTGTGCCTGGCC
1 GTGTGCCTGGCC
*
14870042 GTGTGGCTGGCC
1 GTGTGCCTGGCC
14870054 GTGTGC
1 GTGTGC
14870060 GAGACACGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.27, G:0.47, T:0.27
Consensus pattern (12 bp):
GTGTGCCTGGCC
Found at i:14872909 original size:6 final size:6
Alignment explanation
Indices: 14872898--14872939 Score: 57
Period size: 6 Copynumber: 6.5 Consensus size: 6
14872888 ATAGATAAAT
14872898 AAAAAG AAAAAG AAAAATAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG --AAA-AAG AAAAAG AAAAAG AAAAAG AAA
14872940 GAAAATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 24 0.73
7 3 0.09
8 3 0.09
9 3 0.09
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:14872921 original size:15 final size:15
Alignment explanation
Indices: 14872901--14872944 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
14872891 GATAAATAAA
*
14872901 AAGAAAAAGAAAAAT
1 AAGAAAAAGAAAAAG
14872916 AAGAAAAAGAAAAAG
1 AAGAAAAAGAAAAAG
*
14872931 AAAAAGAAAGAAAA
1 AAGAA-AAAGAAAA
14872945 TTTTTTACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 18 0.69
16 8 0.31
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (15 bp):
AAGAAAAAGAAAAAG
Found at i:14872924 original size:21 final size:22
Alignment explanation
Indices: 14872898--14872944 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
14872888 ATAGATAAAT
*
14872898 AAAAAGAAAAAGAAAAA-TAAG
1 AAAAAGAAAAAGAAAAAGAAAG
14872919 AAAAAGAAAAAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAAAGAAAG
14872941 AAAA
1 AAAA
14872945 TTTTTTACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAAGAAAAAGAAAAAGAAAG
Found at i:14873736 original size:17 final size:18
Alignment explanation
Indices: 14873714--14873747 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14873704 ATTATTAATA
14873714 ATTATTTTTTAA-ACATT
1 ATTATTTTTTAATACATT
14873731 ATTATTTTTTAATACAT
1 ATTATTTTTTAATACAT
14873748 GCATATGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTTTTTAATACATT
Found at i:14874519 original size:23 final size:22
Alignment explanation
Indices: 14874469--14874576 Score: 67
Period size: 25 Copynumber: 4.6 Consensus size: 22
14874459 TTATTTCTAA
14874469 TATGTATATATATATTAACAACTATAT
1 TATGTATATAT-T-TTAAC-AC--TAT
*
14874496 TATGTATGTATTCTTAACACTATTT
1 TATGTATATATT-TTAACACTA--T
* *
14874521 TATGTATATACTTTTAATATTAT
1 TATGTATATA-TTTTAACACTAT
* *
14874544 TATGTATTTATTTTAATA-TA-
1 TATGTATATATTTTAACACTAT
*
14874564 TATGTACATATTT
1 TATGTATATATTT
14874577 ATGTAGCATT
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
20 11 0.16
21 2 0.03
22 8 0.11
23 12 0.17
25 19 0.27
26 8 0.11
27 10 0.14
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (22 bp):
TATGTATATATTTTAACACTAT
Found at i:14874523 original size:25 final size:27
Alignment explanation
Indices: 14874469--14874530 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 27
14874459 TTATTTCTAA
14874469 TATGTATATATATATTAACAACTATAT
1 TATGTATATATATATTAACAACTATAT
* * *
14874496 TATGTATGTAT-TCTTAAC-ACTATTT
1 TATGTATATATATATTAACAACTATAT
14874521 TATGTATATA
1 TATGTATATA
14874531 CTTTTAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 15 0.48
26 6 0.19
27 10 0.32
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.48
Consensus pattern (27 bp):
TATGTATATATATATTAACAACTATAT
Found at i:14874575 original size:20 final size:22
Alignment explanation
Indices: 14874493--14874576 Score: 75
Period size: 22 Copynumber: 3.7 Consensus size: 22
14874483 TTAACAACTA
*
14874493 TATTATGTATGTATTCTTAACACTAT
1 TATTATGTATATATT-TT-A-A-TAT
14874519 T-TTATGTATATACTTTTAATAT
1 TATTATGTATATA-TTTTAATAT
*
14874541 TATTATGTATTTATTTTAATA-
1 TATTATGTATATATTTTAATAT
*
14874562 TA-TATGTACATATTT
1 TATTATGTATATATTT
14874577 ATGTAGCATT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
20 11 0.21
21 2 0.04
22 12 0.23
23 11 0.21
24 1 0.02
25 12 0.23
26 3 0.06
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (22 bp):
TATTATGTATATATTTTAATAT
Found at i:14874682 original size:15 final size:15
Alignment explanation
Indices: 14874637--14874676 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
14874627 ATGTTCATTT
*
14874637 TATATATATTATGTG
1 TATATATATTATGTA
14874652 TATATATATTATGTA
1 TATATATATTATGTA
14874667 TATATATATT
1 TATATATATT
14874677 TAGTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TATATATATTATGTA
Found at i:14878084 original size:42 final size:46
Alignment explanation
Indices: 14878023--14878143 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 46
14878013 CTTCGTTTTC
**
14878023 TCGATGCCATAGTTCAACTATGGTCTTACAC-AT-C-T-TCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACAATACATATCACAT-A
14878066 T-GATGCCATAGCCCAACTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC--AAT-ACATATCACATA
*
14878114 TCGATGCCATAGCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAACTATGGTCTTACA
14878144 TGAATCGCAT
Statistics
Matches: 67, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
42 27 0.40
43 1 0.01
45 2 0.03
47 1 0.01
48 3 0.04
49 33 0.49
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (46 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACAATACATATCACATA
Found at i:14878124 original size:49 final size:47
Alignment explanation
Indices: 14878058--14878187 Score: 156
Period size: 49 Copynumber: 2.7 Consensus size: 47
14878048 TTACACATCT
14878058 TCACATAATGATGCCATAGCCCAACTATGGTCTTACACGTAATCACATA
1 TCACAT-ATGATGCCATAGCCCAACTATGGTCTTACACG-AATCACATA
* * *
14878107 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACATGAATCGCATA
1 TCACATAT-GATGCCATAGCCCAACTATGGTCTTACACGAATCACATA
* * *
14878155 TCTCA-CTGATGCCATATCCCAGA-TATGGTCTTA
1 TCACATATGATGCCATAGCCCA-ACTATGGTCTTA
14878188 TACAGTAGCA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
46 23 0.32
47 1 0.01
48 14 0.19
49 34 0.47
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (47 bp):
TCACATATGATGCCATAGCCCAACTATGGTCTTACACGAATCACATA
Found at i:14878298 original size:31 final size:31
Alignment explanation
Indices: 14878263--14878503 Score: 367
Period size: 31 Copynumber: 7.8 Consensus size: 31
14878253 CTTGTCACTT
* *
14878263 GTAGCCGGAGCTGCCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
14878294 GTAGCCGGAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
14878325 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* * *
14878356 GTAACC-AAGATACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14878386 GTAGCAGCAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
14878417 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14878448 GTAGCAGGAGCTACCGCTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
14878479 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
14878504 TTTCATTTGT
Statistics
Matches: 191, Mismatches: 18, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
30 25 0.13
31 166 0.87
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:14881897 original size:22 final size:22
Alignment explanation
Indices: 14881872--14881927 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14881862 ATTCATGACT
*
14881872 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTCATTC
*
14881894 AACATTCATTTGTCATTCATTC
1 AACATTCATTCGTCATTCATTC
*
14881916 ATTCATTCATTC
1 A-ACATTCATTC
14881928 ATTGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.27, C:0.23, G:0.04, T:0.46
Consensus pattern (22 bp):
AACATTCATTCGTCATTCATTC
Found at i:14881913 original size:4 final size:4
Alignment explanation
Indices: 14881906--14881930 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14881896 CATTCATTTG
14881906 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
14881931 GTATGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:14888915 original size:31 final size:30
Alignment explanation
Indices: 14888870--14888937 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
14888860 ATCTAATTTT
*
14888870 TTTTGTCCAATTTGGAACCCAAACTTGACAA
1 TTTT-TCCAATTTGGAACACAAACTTGACAA
* * *
14888901 TTTTTCCTAATTTGGTACATAAACTTGACAC
1 TTTTTCC-AATTTGGAACACAAACTTGACAA
14888932 TTTTTC
1 TTTTTC
14888938 TTAAGTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 3 0.09
31 29 0.91
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTTTCCAATTTGGAACACAAACTTGACAA
Found at i:14888955 original size:31 final size:31
Alignment explanation
Indices: 14888890--14888957 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
14888880 TTTGGAACCC
* *
14888890 AAACTTGACAATTTTTCCTAATTTGGTACAT
1 AAACTTGACAATTTTTCCTAAGTTGATACAT
* * *
14888921 AAACTTGACACTTTTTCTTAAGTTGATACTT
1 AAACTTGACAATTTTTCCTAAGTTGATACAT
14888952 AAACTT
1 AAACTT
14888958 TTTCGGGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (31 bp):
AAACTTGACAATTTTTCCTAAGTTGATACAT
Found at i:14900942 original size:64 final size:65
Alignment explanation
Indices: 14900862--14900988 Score: 220
Period size: 65 Copynumber: 2.0 Consensus size: 65
14900852 ATAAAATCCT
14900862 GAAAACCGATTGTAAAGGGG-TACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAAA
1 GAAAACCGATTGTAAAGGGGTTACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAAA
* * *
14900926 GAAAATCGATTGTAAAGGGGTTCCCCTTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAA
1 GAAAACCGATTGTAAAGGGGTTACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAA
14900989 GATTGAATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
64 19 0.32
65 40 0.68
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (65 bp):
GAAAACCGATTGTAAAGGGGTTACCATTTTTGAAAAACATAGAAGAAAATATACAAAAAAAAAAA
Found at i:14901859 original size:4 final size:4
Alignment explanation
Indices: 14901850--14901887 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
14901840 AATTGAGTCT
* *
14901850 TTTA TTTA TTTA TTTA TTTA CTTA TTTA CTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
14901888 AGTTTTTTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:14901969 original size:17 final size:17
Alignment explanation
Indices: 14901949--14901981 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14901939 TATTGTTCCT
14901949 TTTTTACTTTT-TTTTTA
1 TTTTTA-TTTTCTTTTTA
14901966 TTTTTATTTTCTTTTT
1 TTTTTATTTTCTTTTT
14901982 GTGCCTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTATTTTCTTTTTA
Found at i:14902010 original size:39 final size:40
Alignment explanation
Indices: 14901923--14902013 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 40
14901913 AAAACTGTTT
* * ** **
14901923 TTATTTTATTTTCCTTTATTGTTCCTTTTTTACTTTTTTT
1 TTATTTTATTTTCCTTTATTGTGCCTTTGTTACTTGATCA
14901963 TTATTTTTATTTT-CTTT-TTGTGCCTTTGTTATCTTGATCA
1 TTA-TTTTATTTTCCTTTATTGTGCCTTTGTTA-CTTGATCA
14902003 TTATTTTATTT
1 TTATTTTATTT
14902014 ATTATTATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 20 0.47
40 14 0.33
41 9 0.21
ACGTcount: A:0.12, C:0.11, G:0.05, T:0.71
Consensus pattern (40 bp):
TTATTTTATTTTCCTTTATTGTGCCTTTGTTACTTGATCA
Found at i:14913708 original size:11 final size:11
Alignment explanation
Indices: 14913692--14913722 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14913682 ATACCCATAC
14913692 CCCATACCTTG
1 CCCATACCTTG
*
14913703 CCCATACCTTT
1 CCCATACCTTG
14913714 CCCATACCT
1 CCCATACCT
14913723 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:14914296 original size:18 final size:18
Alignment explanation
Indices: 14914269--14914325 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
14914259 TACGACCGTT
14914269 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
14914287 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
14914305 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
14914323 TAC
1 TAC
14914326 AGTAGTTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:14918396 original size:11 final size:11
Alignment explanation
Indices: 14918380--14918410 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14918370 ATACCCATAC
14918380 CCCATACCTTG
1 CCCATACCTTG
*
14918391 CCCATACCTTT
1 CCCATACCTTG
14918402 CCCATACCT
1 CCCATACCT
14918411 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:14923357 original size:19 final size:19
Alignment explanation
Indices: 14923317--14923360 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14923307 CTAAATTGAT
* **
14923317 CTATTTAATAATAAAATTA
1 CTATTTAAGAATAAAAGGA
14923336 CTATTTAAGAATAAAAGGA
1 CTATTTAAGAATAAAAGGA
14923355 CTATTT
1 CTATTT
14923361 TATATCAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (19 bp):
CTATTTAAGAATAAAAGGA
Found at i:14929007 original size:29 final size:31
Alignment explanation
Indices: 14928951--14929009 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
14928941 TCATAGGGTG
14928951 ATAGCAATATGTATATATTAGCCTCTTTTTT
1 ATAGCAATATGTATATATTAGCCTCTTTTTT
*
14928982 ATAGCAATATGTATATGTTAGCCT-TTTT
1 ATAGCAATATGTATATATTAGCCTCTTTT
14929010 GAGCTCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (31 bp):
ATAGCAATATGTATATATTAGCCTCTTTTTT
Found at i:14932575 original size:21 final size:22
Alignment explanation
Indices: 14932549--14932590 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
14932539 ACAGAGGCGA
*
14932549 AACAGAAGCA-AAACCATACAG
1 AACAGAAGCAGAAACAATACAG
*
14932570 AACAGAGGCAGAAACAATACA
1 AACAGAAGCAGAAACAATACA
14932591 AAGCAGGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.57, C:0.21, G:0.17, T:0.05
Consensus pattern (22 bp):
AACAGAAGCAGAAACAATACAG
Done.