Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 50 of 295
Found at i:14934019 original size:3 final size:3
Alignment explanation
Indices: 14934011--14934069 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
14934001 TTCTAATGCC
* * * *
14934011 ATT ATT ATT ATC ACTT CT- ATT ATT ATT ACT ATT ATT ATT ACT ATT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14934056 ATT ATT ATAT ATT A
1 ATT ATT AT-T ATT A
14934070 GTGTATATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
2 1 0.02
3 40 0.89
4 4 0.09
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:14934042 original size:12 final size:12
Alignment explanation
Indices: 14934027--14934062 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
14934017 ATTATCACTT
14934027 CTATTATTATTA
1 CTATTATTATTA
14934039 CTATTATTATTA
1 CTATTATTATTA
14934051 CTATTATTATTA
1 CTATTATTATTA
14934063 TATATTAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (12 bp):
CTATTATTATTA
Found at i:14934173 original size:3 final size:3
Alignment explanation
Indices: 14934165--14934191 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14934155 TGTATTTCTA
14934165 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
14934192 ATAGTAGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14934671 original size:27 final size:28
Alignment explanation
Indices: 14934633--14934689 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 28
14934623 TTCATTATTA
14934633 TACTATATCTATTATT-TATTAGCATTT
1 TACTATATCTATTATTATATTAGCATTT
*
14934660 TACTAT-TACTATTATTAGTATTAGCGTTT
1 TACTATAT-CTATTATTA-TATTAGCATTT
14934689 T
1 T
14934690 TTATCAATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 1 0.04
27 14 0.54
29 11 0.42
ACGTcount: A:0.28, C:0.11, G:0.07, T:0.54
Consensus pattern (28 bp):
TACTATATCTATTATTATATTAGCATTT
Found at i:14934789 original size:13 final size:12
Alignment explanation
Indices: 14934771--14934841 Score: 54
Period size: 13 Copynumber: 5.5 Consensus size: 12
14934761 TTCTTAATAC
14934771 TATATTGTGTATA
1 TATATT-TGTATA
*
14934784 TATATTTTTAATAA
1 TATATTTGT-AT-A
14934798 CTATATTATGTATA
1 -TATATT-TGTATA
*
14934812 TAT-TTCGTATA
1 TATATTTGTATA
*
14934823 TATATCATGTATA
1 TATAT-TTGTATA
14934836 TATATT
1 TATATT
14934842 ATATTTTATG
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
11 8 0.17
12 5 0.11
13 21 0.46
14 2 0.04
15 8 0.17
16 2 0.04
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (12 bp):
TATATTTGTATA
Found at i:14934809 original size:28 final size:27
Alignment explanation
Indices: 14934757--14934841 Score: 104
Period size: 28 Copynumber: 3.2 Consensus size: 27
14934747 ACATGTTGTG
*
14934757 TATATTCTTAATACTATATTGTGTATA
1 TATATTCTTAATACTATATTATGTATA
*
14934784 TATATTTTTAATAACTATATTATGTATA
1 TATATTCTTAAT-ACTATATTATGTATA
* *
14934812 TAT-TTCGT-ATA-TATATCATGTATA
1 TATATTCTTAATACTATATTATGTATA
14934836 TATATT
1 TATATT
14934842 ATATTTTATG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
24 15 0.29
25 3 0.06
26 2 0.04
27 14 0.27
28 17 0.33
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (27 bp):
TATATTCTTAATACTATATTATGTATA
Found at i:14934815 original size:11 final size:11
Alignment explanation
Indices: 14934799--14934858 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
14934789 TTTTAATAAC
14934799 TATATTATGTA
1 TATATTATGTA
14934810 TATATT-TCGTA
1 TATATTAT-GTA
14934821 TATATATCATGTA
1 TATAT-T-ATGTA
14934834 TATA-TAT-TA
1 TATATTATGTA
*
14934843 TATTTTATGTA
1 TATATTATGTA
14934854 TATAT
1 TATAT
14934859 CTTCAATATC
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
9 5 0.12
10 6 0.15
11 21 0.51
12 1 0.02
13 7 0.17
14 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (11 bp):
TATATTATGTA
Found at i:14934857 original size:13 final size:13
Alignment explanation
Indices: 14934757--14934858 Score: 50
Period size: 15 Copynumber: 7.4 Consensus size: 13
14934747 ACATGTTGTG
14934757 TATATTCTTA-ATA
1 TATATT-TTATATA
14934770 CTATATTGTGTATATA
1 -TATATT-T-TATATA
14934786 TAT-TTTTA-ATA
1 TATATTTTATATA
* *
14934797 -ACTATATTATGTA
1 TA-TATTTTATATA
14934810 TATATTTCGTATATA
1 TATATTT--TATATA
*
14934825 TATCATGTATATATA
1 TAT-AT-TTTATATA
*
14934840 TTATATTTTATGTA
1 -TATATTTTATATA
14934854 TATAT
1 TATAT
14934859 CTTCAATATC
Statistics
Matches: 69, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
10 1 0.01
11 4 0.06
12 6 0.09
13 12 0.17
14 16 0.23
15 21 0.30
16 8 0.12
17 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.54
Consensus pattern (13 bp):
TATATTTTATATA
Found at i:14935265 original size:12 final size:12
Alignment explanation
Indices: 14935250--14935279 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
14935240 ATATTATTAA
14935250 CATTATCGTTTT
1 CATTATCGTTTT
14935262 CATTATCGTTTT
1 CATTATCGTTTT
14935274 CATTAT
1 CATTAT
14935280 TTTGTCATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (12 bp):
CATTATCGTTTT
Found at i:14938440 original size:17 final size:17
Alignment explanation
Indices: 14938418--14938451 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14938408 AACTTTTCTA
*
14938418 TATTTTTTATTATTTTT
1 TATTTTTTATCATTTTT
14938435 TATTTTTTATCATTTTT
1 TATTTTTTATCATTTTT
14938452 CACAACATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TATTTTTTATCATTTTT
Found at i:14938581 original size:10 final size:10
Alignment explanation
Indices: 14938555--14938649 Score: 67
Period size: 10 Copynumber: 9.6 Consensus size: 10
14938545 GTCAAAGGGT
14938555 ATTTTTTATA
1 ATTTTTTATA
*
14938565 CA-CTTTTATA
1 -ATTTTTTATA
14938575 ATTTTTT-TA
1 ATTTTTTATA
14938584 ATTATTTTTATA
1 A-T-TTTTTATA
* *
14938596 A-ATTTTACA
1 ATTTTTTATA
14938605 ATTTTATTATA
1 ATTTT-TTATA
14938616 ATTTTTTACT-
1 ATTTTTTA-TA
*
14938626 ATATTTTAT-
1 ATTTTTTATA
14938635 -TTTTTTATA
1 ATTTTTTATA
14938644 ATTTTT
1 ATTTTT
14938650 AAAAAATAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
8 7 0.10
9 12 0.18
10 29 0.43
11 16 0.24
12 3 0.04
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:14938592 original size:21 final size:20
Alignment explanation
Indices: 14938568--14938622 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
14938558 TTTTATACAC
*
14938568 TTTTATAATTTTTTTAATTAT
1 TTTTATAATTTTTTCAATT-T
* *
14938589 TTTTATAAATTTTACAATTT
1 TTTTATAATTTTTTCAATTT
*
14938609 TATTATAATTTTTT
1 TTTTATAATTTTTT
14938623 ACTATATTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTATAATTTTTTCAATTT
Found at i:14938608 original size:30 final size:32
Alignment explanation
Indices: 14938556--14938622 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 32
14938546 TCAAAGGGTA
* *
14938556 TTTTTTATACACTTTTATAATTTT-TT-TAAT
1 TTTTTTATACAATTTTACAATTTTATTATAAT
14938586 TATTTTTATA-AATTTTACAATTTTATTATAAT
1 T-TTTTTATACAATTTTACAATTTTATTATAAT
14938618 TTTTT
1 TTTTT
14938623 ACTATATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 13 0.41
31 14 0.44
32 5 0.16
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTTTTATACAATTTTACAATTTTATTATAAT
Found at i:14938623 original size:21 final size:21
Alignment explanation
Indices: 14938570--14938635 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
14938560 TTATACACTT
* *
14938570 TTATAATTTTTT-TAATTATTT
1 TTATAATTTTTTACAATT-TTA
*
14938591 TTATAA-ATTTTACAATTTTA
1 TTATAATTTTTTACAATTTTA
14938611 TTATAATTTTTTACTATATTTTA
1 TTATAATTTTTTAC-A-ATTTTA
14938634 TT
1 TT
14938636 TTTTTATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
20 12 0.32
21 16 0.43
22 1 0.03
23 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATAATTTTTTACAATTTTA
Found at i:14945183 original size:8 final size:8
Alignment explanation
Indices: 14945170--14945194 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14945160 GATAAAAAAG
14945170 AAATAATT
1 AAATAATT
14945178 AAATAATT
1 AAATAATT
14945186 AAATAATT
1 AAATAATT
14945194 A
1 A
14945195 TTTTATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAATAATT
Found at i:14948498 original size:19 final size:19
Alignment explanation
Indices: 14948474--14948511 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14948464 CAATACATAA
14948474 TCATTTTCGGGTTTTATAT
1 TCATTTTCGGGTTTTATAT
14948493 TCATTTTCGGGTTTTATAT
1 TCATTTTCGGGTTTTATAT
14948512 GAGCTTACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (19 bp):
TCATTTTCGGGTTTTATAT
Found at i:14961155 original size:41 final size:41
Alignment explanation
Indices: 14961098--14961180 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
14961088 ATTGTGGGTT
14961098 ATACGGCTACTAGAAGAAGATACTCATGATTATTTATATGA
1 ATACGGCTACTAGAAGAAGATACTCATGATTATTTATATGA
14961139 ATACGGCTACTAGAAGAAGATACTCATGATTATTTATATGA
1 ATACGGCTACTAGAAGAAGATACTCATGATTATTTATATGA
14961180 A
1 A
14961181 GGAACCACTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (41 bp):
ATACGGCTACTAGAAGAAGATACTCATGATTATTTATATGA
Found at i:14965802 original size:29 final size:30
Alignment explanation
Indices: 14965740--14965809 Score: 97
Period size: 29 Copynumber: 2.3 Consensus size: 30
14965730 TTTTTTCTTT
* *
14965740 TACATAAAATTTAATTTAATGTGTAATTGTA
1 TACATAAAATTTAATTT-AGGTGTAATTATA
*
14965771 TACATAAATTTTAATTT-GGTGTAATTATA
1 TACATAAAATTTAATTTAGGTGTAATTATA
14965800 TACATAAAAT
1 TACATAAAAT
14965810 ACTAATTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.54
31 16 0.46
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (30 bp):
TACATAAAATTTAATTTAGGTGTAATTATA
Found at i:14969209 original size:45 final size:45
Alignment explanation
Indices: 14969158--14969262 Score: 174
Period size: 45 Copynumber: 2.3 Consensus size: 45
14969148 ATTTAACATT
*
14969158 TATAGAAGTGGTAATAGTCTTCACTATTACACATTCATAATGAAA
1 TATAGAAGTGGTAATAGTCCTCACTATTACACATTCATAATGAAA
*
14969203 TATAGAAGTGGTAATAGTCCTCACTATTACACATTCATACTGAAA
1 TATAGAAGTGGTAATAGTCCTCACTATTACACATTCATAATGAAA
*
14969248 TAAAGAAGTTGGTAA
1 TATAGAAG-TGGTAA
14969263 GACAAAACGA
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 50 0.89
46 6 0.11
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (45 bp):
TATAGAAGTGGTAATAGTCCTCACTATTACACATTCATAATGAAA
Found at i:14980713 original size:20 final size:20
Alignment explanation
Indices: 14980677--14980714 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14980667 AATTATTTTG
*
14980677 TAATTTTTATGTAATAAAAA
1 TAATTTTTATATAATAAAAA
14980697 TAATATTTTATAT-ATAAA
1 TAAT-TTTTATATAATAAA
14980715 CTCGATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATTTTTATATAATAAAAA
Found at i:14982152 original size:20 final size:21
Alignment explanation
Indices: 14982129--14982176 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
14982119 ATTAAAAAAC
* * *
14982129 ATTTTTTATATAATTTTTAT-
1 ATTTTTAAAATAATTTTAATG
14982149 ATTTTTAAAATAATTTTAATG
1 ATTTTTAAAATAATTTTAATG
14982170 ATTTTTA
1 ATTTTTA
14982177 TGTTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTTTAAAATAATTTTAATG
Found at i:14982165 original size:32 final size:32
Alignment explanation
Indices: 14982078--14982165 Score: 88
Period size: 33 Copynumber: 2.8 Consensus size: 32
14982068 TCTTACACAT
*
14982078 ATTTTTAAA-TTTAAAATAATTTTTTAAAAAA
1 ATTTTAAAATTTTAAAATAATTTTTTAAAAAA
* * * *
14982109 ATTTTAAAATATTAAAAAACATTTTTTATATAA
1 ATTTTAAAATTTTAAAATA-ATTTTTTAAAAAA
* * *
14982142 TTTTTATATTTTTAAAATAATTTT
1 ATTTTAAAATTTTAAAATAATTTT
14982166 AATGATTTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
31 8 0.18
32 12 0.27
33 25 0.56
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (32 bp):
ATTTTAAAATTTTAAAATAATTTTTTAAAAAA
Found at i:14984986 original size:16 final size:16
Alignment explanation
Indices: 14984965--14984997 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14984955 CATTTGGGTA
*
14984965 TAGTGAATGGTCAAAT
1 TAGTGAAAGGTCAAAT
14984981 TAGTGAAAGGTCAAAT
1 TAGTGAAAGGTCAAAT
14984997 T
1 T
14984998 CAGTTCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.30
Consensus pattern (16 bp):
TAGTGAAAGGTCAAAT
Found at i:14989356 original size:15 final size:16
Alignment explanation
Indices: 14989328--14989368 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
14989318 TAAAATATAT
*
14989328 AAATAATTTGAATTTA
1 AAATAATTTGAATTCA
*
14989344 AAATGATTT-AATTCA
1 AAATAATTTGAATTCA
14989359 AAATAATTTG
1 AAATAATTTG
14989369 TGTGTTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (16 bp):
AAATAATTTGAATTCA
Found at i:14994087 original size:35 final size:37
Alignment explanation
Indices: 14994013--14994088 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
14994003 TTAATTTTTT
*
14994013 TATTTGTAATTTCTTAATTTAATAATTTTATTACATA
1 TATTTGTAATTTCTTAATTTAAAAATTTTATTACATA
14994050 TATTT-TAATTT-TTAATTTCAAAAGATTTTA-TACTATA
1 TATTTGTAATTTCTTAATTT-AAAA-ATTTTATTAC-ATA
14994087 TA
1 TA
14994089 ATGGGTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 7 0.20
36 12 0.34
37 16 0.46
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (37 bp):
TATTTGTAATTTCTTAATTTAAAAATTTTATTACATA
Found at i:14994665 original size:13 final size:13
Alignment explanation
Indices: 14994647--14994671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14994637 TGATATGTTT
14994647 ATTAATTAAAAAC
1 ATTAATTAAAAAC
14994660 ATTAATTAAAAA
1 ATTAATTAAAAA
14994672 TAAAAAAGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:14998696 original size:23 final size:23
Alignment explanation
Indices: 14998653--14998698 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14998643 TTATTTTCCA
*
14998653 TTTTCATATTTTATTCACATTTT
1 TTTTCATATTTTATACACATTTT
14998676 TTTTCTATATTTTATAC-CATTTT
1 TTTTC-ATATTTTATACACATTTT
14998699 ATGGTCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.22, C:0.13, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTCATATTTTATACACATTTT
Found at i:14998708 original size:23 final size:23
Alignment explanation
Indices: 14998656--14998711 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
14998646 TTTTCCATTT
* **
14998656 TCATATTTTATTCACATTTTTTT
1 TCATATTTTATACACATTTTTGG
14998679 TCTATATTTTATAC-CATTTTATGG
1 TC-ATATTTTATACACATTTT-TGG
14998703 TCATATTTT
1 TCATATTTT
14998712 CGGCTCTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.23, C:0.12, G:0.04, T:0.61
Consensus pattern (23 bp):
TCATATTTTATACACATTTTTGG
Found at i:15009856 original size:20 final size:21
Alignment explanation
Indices: 15009819--15009858 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
15009809 GAAAAATAAA
15009819 AAAAATAAAATTAAGAATTTGG
1 AAAAATAAAA-TAAGAATTTGG
15009841 AAAAATAAAA-AAGAATTT
1 AAAAATAAAATAAGAATTT
15009859 AAAGTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (21 bp):
AAAAATAAAATAAGAATTTGG
Found at i:15010630 original size:20 final size:20
Alignment explanation
Indices: 15010607--15010646 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15010597 TGAAATTCTA
15010607 AAAGATAAAT-ACAAATAAAT
1 AAAGATAAATGA-AAATAAAT
15010627 AAAGATAAATGAAAATAAAT
1 AAAGATAAATGAAAATAAAT
15010647 CCTAGAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATGAAAATAAAT
Found at i:15014187 original size:18 final size:19
Alignment explanation
Indices: 15014151--15014192 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
15014141 AAATTACAAA
15014151 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTTT
15014170 AAAATTCAAAAT-ATTTTT
1 AAAATTCAAAATAATTTTT
15014188 AAAAT
1 AAAAT
15014193 ATTATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:15014209 original size:24 final size:24
Alignment explanation
Indices: 15014181--15014226 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
15014171 AAATTCAAAA
15014181 TATTTTTAAAATATTATAAAATTT
1 TATTTTTAAAATATTATAAAATTT
15014205 TATTTTTAAAATATTATAAAAT
1 TATTTTTAAAATATTATAAAAT
15014227 ATTTCTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TATTTTTAAAATATTATAAAATTT
Found at i:15019089 original size:31 final size:30
Alignment explanation
Indices: 15019047--15019107 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
15019037 AAAAATAATA
15019047 ATAAAATATACATAAATTTTAATACAATTT
1 ATAAAATATACATAAATTTTAATACAATTT
* *
15019077 ATAATAATATACATTAATTTTAATTCAATTT
1 ATAA-AATATACATAAATTTTAATACAATTT
15019108 TCATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (30 bp):
ATAAAATATACATAAATTTTAATACAATTT
Found at i:15033954 original size:27 final size:28
Alignment explanation
Indices: 15033924--15033976 Score: 83
Period size: 27 Copynumber: 1.9 Consensus size: 28
15033914 ATAGTTATAT
15033924 CTAAATTTTAAAATTTA-AAA-AGTATGA
1 CTAAATTTT-AAATTTACAAAGAGTATGA
15033951 CTAAATTTTAAATTTACAAAGAGTAT
1 CTAAATTTTAAATTTACAAAGAGTAT
15033977 AGGGACTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 7 0.29
27 12 0.50
28 5 0.21
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.38
Consensus pattern (28 bp):
CTAAATTTTAAATTTACAAAGAGTATGA
Found at i:15039111 original size:19 final size:19
Alignment explanation
Indices: 15039087--15039130 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
15039077 ACTAAACCAT
*
15039087 TTTAAAATTTAAAGAATAA
1 TTTAAAATCTAAAGAATAA
*
15039106 TTTAAAATCTAAATAATAA
1 TTTAAAATCTAAAGAATAA
15039125 TTTAAA
1 TTTAAA
15039131 TATGTTATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
TTTAAAATCTAAAGAATAA
Found at i:15049023 original size:6 final size:6
Alignment explanation
Indices: 15049012--15049042 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
15049002 GCTTTTTTAT
15049012 TTAATA TTAATA TTAATA TTAATA TTAATA T
1 TTAATA TTAATA TTAATA TTAATA TTAATA T
15049043 AAAATTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:15049051 original size:18 final size:17
Alignment explanation
Indices: 15049010--15049051 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
15049000 GGGCTTTTTT
*
15049010 ATTTAATATTAATATTA
1 ATTTAATATTAATATAA
15049027 ATATTAATATTAATATAAA
1 AT-TTAATATTAATAT-AA
15049046 ATTTAA
1 ATTTAA
15049052 ATTTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTAATATTAATATAA
Found at i:15049129 original size:9 final size:9
Alignment explanation
Indices: 15049107--15049140 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
15049097 ATATATATTT
15049107 AAAATTTTAA
1 AAAATTTT-A
*
15049117 AAAATTTTG
1 AAAATTTTA
15049126 AAAATTTTA
1 AAAATTTTA
15049135 AAAATT
1 AAAATT
15049141 AATTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:15051232 original size:292 final size:291
Alignment explanation
Indices: 15050709--15051255 Score: 898
Period size: 292 Copynumber: 1.9 Consensus size: 291
15050699 CTTAGAAAAT
** * * **
15050709 TCATTCTTGATTCTTACAATGCAAGGTATTCATCAAAATGCGGTAATTCTTTTGGCCATAGACAA
1 TCATTCTCAATTCTTACAATGCAAGGCATTCAGCAAAATGCCATAATTCTTTTGGCCATAGACAA
* *
15050774 ATCCCTCTTCTTCCAATCCTTGAGCAATTCAAAAGCATCATTACTCTTCCCTTCACTACACAACT
66 ATCCCTCTTCTTCCAATCCTCGAGCAATTCAAAAGCATCATTACTCTTCCCTCCACTACACAACT
*
15050839 CTTCCAATACGGTCTTATAAGTCAATAAATACAGCGCCATTGAGTGTTCCAACATATCATAAACA
131 CTTCCAATACGGTCTTATAAGTCAATAAATACAGCGCCATTGAATGTTCCAACATATCATAAACA
* * *
15050904 ATATCAATAGCATCATCAAGCCTTTGCTCCATTGCAAGGCTACAAATCAGAATCATATAAACAAG
196 ACATCAACAGCATCATCAAGCCTTTGCTCCATTGCAAGACTACAAATCAGAATCATATAAACAAG
15050969 AACTACTTAGTTTTTGGACCATAGAGACCAG
261 AACTACTTAGTTTTTGGACCATAGAGACCAG
*
15051000 TCATTCTCAATTCTTACAATGCAAGGCATTCAGCAAAATGCCATAATTCTTTTGGCCCATGGACA
1 TCATTCTCAATTCTTACAATGCAAGGCATTCAGCAAAATGCCATAATTCTTTTGG-CCATAGACA
* *
15051065 AATCCCTCTTCTTCCACTCCTCGAGCAATTCAAAAGCATCATTACTCTTCCCTCCCCTACACAAC
65 AATCCCTCTTCTTCCAATCCTCGAGCAATTCAAAAGCATCATTACTCTTCCCTCCACTACACAAC
* * *
15051130 TCTTCCAATACTGTCTTATAAGTCAATAAATCCGGCGCCATTGAAT-TCTCCAACATATCATAAA
130 TCTTCCAATACGGTCTTATAAGTCAATAAATACAGCGCCATTGAATGT-TCCAACATATCATAAA
*
15051194 CAACATCAACGGCATCATCAAGCCTTTGCTCCATTGCAAGACTACAAATCAGAATCATATAA
194 CAACATCAACAGCATCATCAAGCCTTTGCTCCATTGCAAGACTACAAATCAGAATCATATAA
15051256 GCACTCCCTT
Statistics
Matches: 235, Mismatches: 19, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
291 50 0.21
292 185 0.79
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (291 bp):
TCATTCTCAATTCTTACAATGCAAGGCATTCAGCAAAATGCCATAATTCTTTTGGCCATAGACAA
ATCCCTCTTCTTCCAATCCTCGAGCAATTCAAAAGCATCATTACTCTTCCCTCCACTACACAACT
CTTCCAATACGGTCTTATAAGTCAATAAATACAGCGCCATTGAATGTTCCAACATATCATAAACA
ACATCAACAGCATCATCAAGCCTTTGCTCCATTGCAAGACTACAAATCAGAATCATATAAACAAG
AACTACTTAGTTTTTGGACCATAGAGACCAG
Found at i:15056305 original size:20 final size:20
Alignment explanation
Indices: 15056266--15056305 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15056256 AATATTGTTG
*
15056266 AAAAATTTATTTTTTCTTTA
1 AAAAATTTATATTTTCTTTA
15056286 AAAAATTTATAATTTT-TTTA
1 AAAAATTTAT-ATTTTCTTTA
15056306 TATTACTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
AAAAATTTATATTTTCTTTA
Found at i:15057141 original size:26 final size:27
Alignment explanation
Indices: 15057107--15057159 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
15057097 ACAATTACAA
15057107 AACCATAAAACTCAAAAT-AATCTAAAC
1 AACCATAAAACTCAAAATGAATC-AAAC
* *
15057134 AACC-TAAAATTTAAAATGAATCAAAC
1 AACCATAAAACTCAAAATGAATCAAAC
15057160 TCAAAATTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (27 bp):
AACCATAAAACTCAAAATGAATCAAAC
Found at i:15060655 original size:25 final size:24
Alignment explanation
Indices: 15060609--15060661 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
15060599 ACATACCGTA
15060609 GCTCTTTATGAGCGCTCCGATATAG
1 GCTCTTTATGAGCGCTCCGATAT-G
* *
15060634 GCTCTTTGTGAGC-TTCCTGATATG
1 GCTCTTTATGAGCGCTCC-GATATG
15060658 GCTC
1 GCTC
15060662 GCTTGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.36
Consensus pattern (24 bp):
GCTCTTTATGAGCGCTCCGATATG
Found at i:15062855 original size:18 final size:19
Alignment explanation
Indices: 15062821--15062856 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15062811 TAGCTACGAA
15062821 ATCAAAACAATTAAAATTC
1 ATCAAAACAATTAAAATTC
*
15062840 ATCAATACAA-TAAAATT
1 ATCAAAACAATTAAAATT
15062857 GAAATATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (19 bp):
ATCAAAACAATTAAAATTC
Found at i:15062953 original size:20 final size:20
Alignment explanation
Indices: 15062918--15062962 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
15062908 AAACTGAGAC
15062918 TAATTTTTATTCTTCATATT
1 TAATTTTTATTCTTCATATT
15062938 TAATCTTTTATT-TTCATA-T
1 TAAT-TTTTATTCTTCATATT
15062957 TAATTT
1 TAATTT
15062963 CACTTTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.08
19 5 0.21
20 10 0.42
21 7 0.29
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (20 bp):
TAATTTTTATTCTTCATATT
Found at i:15068384 original size:28 final size:28
Alignment explanation
Indices: 15068353--15068439 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 28
15068343 TTTGTTTTAT
*
15068353 TATACTTTAATTATTATTATATAATATA
1 TATACTTTAATTATTATAATATAATATA
*
15068381 TATACATTTACATTATTA-AGATAAAATAT-
1 TATAC-TTTA-ATTATTATA-ATATAATATA
*
15068410 TTTAACTTTAATTATTATAATATAAGTATA
1 TAT-ACTTTAATTATTATAATATAA-TATA
15068440 ATTACTACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
28 17 0.35
29 14 0.29
30 17 0.35
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (28 bp):
TATACTTTAATTATTATAATATAATATA
Found at i:15068409 original size:30 final size:28
Alignment explanation
Indices: 15068353--15068426 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 28
15068343 TTTGTTTTAT
** *
15068353 TATACTTTAATTATTATTATATAATATA
1 TATACTTTAATTATTAAGATAAAATATA
15068381 TATACATTTACATTATTAAGATAAAATAT-
1 TATAC-TTTA-ATTATTAAGATAAAATATA
*
15068410 TTTAACTTTAATTATTA
1 TAT-ACTTTAATTATTA
15068427 TAATATAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 12 0.31
29 10 0.26
30 17 0.44
ACGTcount: A:0.43, C:0.05, G:0.01, T:0.50
Consensus pattern (28 bp):
TATACTTTAATTATTAAGATAAAATATA
Found at i:15071794 original size:15 final size:15
Alignment explanation
Indices: 15071774--15071804 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15071764 AAAAATACTT
15071774 GTTGAAAATTGTATG
1 GTTGAAAATTGTATG
15071789 GTTGAAAATTGTATG
1 GTTGAAAATTGTATG
15071804 G
1 G
15071805 ATTTTCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (15 bp):
GTTGAAAATTGTATG
Found at i:15072496 original size:20 final size:21
Alignment explanation
Indices: 15072450--15072496 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
15072440 TTTAATTTCT
15072450 TTAAATTATAAATTTTTTTAA
1 TTAAATTATAAATTTTTTTAA
**
15072471 AAAAATTAT-AA-TTTTTTATA
1 TTAAATTATAAATTTTTTTA-A
15072491 TTAAAT
1 TTAAAT
15072497 CTCTTGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 7 0.33
20 7 0.33
21 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAAATTATAAATTTTTTTAA
Found at i:15074972 original size:3 final size:3
Alignment explanation
Indices: 15074952--15075055 Score: 56
Period size: 3 Copynumber: 35.0 Consensus size: 3
15074942 TTAATTTTGC
* * * *
15074952 TAT TAT TAC TGT TA- TAT TAT TGT TACT TAT TAT TAT TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * *
15074997 TAT GTA- CAT T-T TAT T-T ATAC TAT TCT TAA TAT TAT TAT TA- TAT
1 TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
15075040 GTAT TAT CAT TAT TAT
1 -TAT TAT TAT TAT TAT
15075056 AAATATTAGT
Statistics
Matches: 74, Mismatches: 18, Indels: 18
0.67 0.16 0.16
Matches are distributed among these distances:
2 8 0.11
3 58 0.78
4 8 0.11
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:15075360 original size:8 final size:8
Alignment explanation
Indices: 15075318--15075374 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
15075308 TTTATTATGT
15075318 TATTTTAA
1 TATTTTAA
*
15075326 TATCTTTAT
1 TAT-TTTAA
**
15075335 TATATTTGC
1 TAT-TTTAA
15075344 T-TTTT-A
1 TATTTTAA
15075350 TATTTTAA
1 TATTTTAA
15075358 TATTTTAA
1 TATTTTAA
15075366 TATTTTAA
1 TATTTTAA
15075374 T
1 T
15075375 TATCATGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
6 1 0.02
7 7 0.17
8 22 0.54
9 11 0.27
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:15075539 original size:19 final size:19
Alignment explanation
Indices: 15075483--15075539 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
15075473 TTTTATTCTT
*
15075483 AATATTTATATAT-TATGTA
1 AATATCTATATATAT-TGTA
15075502 AATATTCTAATATTATATTGTA
1 AATA-TCT-ATA-TATATTGTA
*
15075524 TATATCTATATATATT
1 AATATCTATATATATT
15075540 TTTTGTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 10 0.31
20 5 0.16
21 6 0.19
22 10 0.31
23 1 0.03
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (19 bp):
AATATCTATATATATTGTA
Found at i:15075615 original size:25 final size:24
Alignment explanation
Indices: 15075587--15075657 Score: 67
Period size: 23 Copynumber: 3.0 Consensus size: 24
15075577 ATTTTACGTA
15075587 TATTATTATGTATATATTTTAATAT
1 TATTATTATGTATAT-TTTTAATAT
* * *
15075612 TATTA-GATATACATCTTTT-ATAT
1 TATTATTATGTATAT-TTTTAATAT
*
15075635 TATT-TTATGTATATTTCTAATAT
1 TATTATTATGTATATTTTTAATAT
15075658 CATTGTATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
22 3 0.08
23 18 0.50
24 10 0.28
25 5 0.14
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (24 bp):
TATTATTATGTATATTTTTAATAT
Found at i:15075666 original size:19 final size:19
Alignment explanation
Indices: 15075642--15075680 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15075632 TATTATTTTA
*
15075642 TGTATATTTCTAATATCAT
1 TGTATATTTCTAACATCAT
15075661 TGTATATTTCTAACATCAT
1 TGTATATTTCTAACATCAT
15075680 T
1 T
15075681 ATTATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (19 bp):
TGTATATTTCTAACATCAT
Found at i:15075773 original size:9 final size:9
Alignment explanation
Indices: 15075759--15075788 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15075749 TCATTTCTAA
15075759 TATATATAT
1 TATATATAT
15075768 TATATATAT
1 TATATATAT
*
15075777 TTTATATAT
1 TATATATAT
15075786 TAT
1 TAT
15075789 GTATGTATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TATATATAT
Found at i:15079094 original size:24 final size:24
Alignment explanation
Indices: 15079065--15079111 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15079055 GTAAAATGGG
15079065 TTTAAAATAAAGT-ATATAAAATAA
1 TTTAAAAT-AAGTAATATAAAATAA
*
15079089 TTTAAAATAAGTAATATATAATA
1 TTTAAAATAAGTAATATAAAATA
15079112 GTTAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (24 bp):
TTTAAAATAAGTAATATAAAATAA
Found at i:15079272 original size:24 final size:22
Alignment explanation
Indices: 15079243--15079299 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 22
15079233 TGAAATACAT
15079243 AATATACAATAATAACTTAAAATA
1 AATATA-AATAATAA-TTAAAATA
*
15079267 TATATAAA-AA-AATTAAAATA
1 AATATAAATAATAATTAAAATA
15079287 AATATATAATAAT
1 AATATA-AATAAT
15079300 TTTTGAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 13 0.46
21 4 0.14
22 4 0.14
23 2 0.07
24 5 0.18
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (22 bp):
AATATAAATAATAATTAAAATA
Found at i:15089197 original size:15 final size:16
Alignment explanation
Indices: 15089177--15089211 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15089167 TTATGATAAT
15089177 AATTAAA-TTTATTTC
1 AATTAAATTTTATTTC
*
15089192 AATTAAATTTTATTTT
1 AATTAAATTTTATTTC
15089208 AATT
1 AATT
15089212 TTATATTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
AATTAAATTTTATTTC
Found at i:15089361 original size:18 final size:18
Alignment explanation
Indices: 15089338--15089374 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15089328 TGATTTTTAT
15089338 GAGTGATATGTTAAAATA
1 GAGTGATATGTTAAAATA
15089356 GAGTGATATGTTAAAATA
1 GAGTGATATGTTAAAATA
15089374 G
1 G
15089375 TAAGTTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.32
Consensus pattern (18 bp):
GAGTGATATGTTAAAATA
Found at i:15095007 original size:111 final size:111
Alignment explanation
Indices: 15094883--15095095 Score: 356
Period size: 111 Copynumber: 1.9 Consensus size: 111
15094873 AGAATTATTA
*
15094883 TTATATTGAAATTTATATCAACAAATGATTTTTAAATATATAATTA-GGATATAAAAAATATAAA
1 TTATATTAAAATTTATATCAACAAATGATTTTTAAATATATAATTAGGGA-ATAAAAAATATAAA
15094947 ATATGAAATTGTGAGATAATAAAATGTATTAAAAATCGATAGAATTT
65 ATATGAAATTGTGAGATAATAAAATGTATTAAAAATCGATAGAATTT
* * * *
15094994 TTATATTAAAATTTATATGAATAAATGATTTTTAAATATTTAATTAGGGAATAAAAATTATAAAA
1 TTATATTAAAATTTATATCAACAAATGATTTTTAAATATATAATTAGGGAATAAAAAATATAAAA
*
15095059 TATGAAATTTTGAGATAATAAAATGTATTAAAAATCG
66 TATGAAATTGTGAGATAATAAAATGTATTAAAAATCG
15095096 TTGAAAATCA
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
111 92 0.97
112 3 0.03
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (111 bp):
TTATATTAAAATTTATATCAACAAATGATTTTTAAATATATAATTAGGGAATAAAAAATATAAAA
TATGAAATTGTGAGATAATAAAATGTATTAAAAATCGATAGAATTT
Found at i:15095455 original size:30 final size:30
Alignment explanation
Indices: 15095420--15095518 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 30
15095410 AATAATTTAT
15095420 ATTTTTATAATTTTTAAAAGATTAAATTAA
1 ATTTTTATAATTTTTAAAAGATTAAATTAA
* *
15095450 ATTTTTATCATTTTTAGAAGATT-AATCTAA
1 ATTTTTATAATTTTTAAAAGATTAAAT-TAA
* * *
15095480 TATTTTTATTATTATTTTAAGAGATTAAAGTATA
1 -ATTTTTA-TAAT-TTTTAAAAGATTAAATTA-A
15095514 ATTTT
1 ATTTT
15095519 ACTTTTACTA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
29 3 0.05
30 24 0.43
31 7 0.12
32 2 0.04
33 17 0.30
34 3 0.05
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (30 bp):
ATTTTTATAATTTTTAAAAGATTAAATTAA
Found at i:15099833 original size:19 final size:18
Alignment explanation
Indices: 15099801--15099861 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 18
15099791 CGTTTCGAGT
*
15099801 TTTAAGTAAGTTTTCATG
1 TTTAAGTAATTTTTCATG
15099819 TTTCAAGTAATTTTTTCATG
1 TTT-AAGTAA-TTTTTCATG
*
15099839 TATTAATTAATTTTTCAATG
1 T-TTAAGTAATTTTTC-ATG
15099859 TTT
1 TTT
15099862 TACGAATTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
18 3 0.08
19 14 0.38
20 18 0.49
21 2 0.05
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.56
Consensus pattern (18 bp):
TTTAAGTAATTTTTCATG
Found at i:15102072 original size:16 final size:17
Alignment explanation
Indices: 15102048--15102090 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
15102038 AGGGTTTCTT
15102048 GGTTTTTTTTTGGGTTA
1 GGTTTTTTTTTGGGTTA
15102065 GGTTTTTTTTTGGGTTA
1 GGTTTTTTTTTGGGTTA
15102082 GGTTTTTTT
1 GGTTTTTTT
15102091 GGGGGGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.05, C:0.00, G:0.28, T:0.67
Consensus pattern (17 bp):
GGTTTTTTTTTGGGTTA
Found at i:15102969 original size:29 final size:30
Alignment explanation
Indices: 15102913--15102973 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
15102903 TTTTGAAAAA
15102913 CAGAAATTAAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAGACTCAACTCAACTCTCG
*
15102943 CAGAAATTAAAAG-CTCAACTCACCTCTCG
1 CAGAAATTAAAAGACTCAACTCAACTCTCG
15102972 CA
1 CA
15102974 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.41, C:0.30, G:0.10, T:0.20
Consensus pattern (30 bp):
CAGAAATTAAAAGACTCAACTCAACTCTCG
Found at i:15103062 original size:79 final size:79
Alignment explanation
Indices: 15102874--15104034 Score: 483
Period size: 77 Copynumber: 14.4 Consensus size: 79
15102864 GACTGGAGGT
*
15102874 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGACTCAACTCA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-A-T-AGCTCA
* * * * *
15102936 ACTC-TCGCAGAAATTAAAAGC
63 GCACGT-G-AG---CTCAAGGC
*
15102957 TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAAAACAGAAATTG-AAAATAGCTCAG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--AAAAACAGAAATTGAAAAATAGCTCAG
15103021 CACGTGAGC-CAAGGC
64 CACGTGAGCTCAAGGC
* *
15103036 TCAACTCACTTCTCGCAATATGAGTTGA--TTTTTG-AAAACAGAATTTGAAAAACAGATTTTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG--AAA-A-A---T--
** ** * * * *
15103098 AAATACCTCGACATGTGACCCGAGGC
57 AGCT-CAGC-ACGTGAG-CTCAAGGC
* * * * * *
15103124 TCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAAATAGCTCAGC
** * *
15103189 GTGTGATCTGAA-GC
65 ACGTGAGCTCAAGGC
* *
15103203 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAAATAGCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAGCTCAGCA
15103267 CGTGAGC-CAAGGC
66 CGTGAGCTCAAGGC
**
15103280 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG---AA---AAA-T--
** ** * * *
15103345 AAATACCTCGGCGTGTGAC-CTGAGGC
57 AGCT-CAGC-ACGTGAG-CTC-AAGGC
* * * * * *
15103371 TCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG-AAATTACCTCAG--
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAGCTCAGCA
* **
15103432 CGTG-TCTTGAGGC
66 CGTGAGCTCAAGGC
15103445 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAAACGGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG---AA---AAA-T--
** * * * *
15103509 AAATACATCGGCGTGTGAC-CTGAGGC
57 AGCT-CAGC-ACGTGAG-CTC-AAGGC
* * * * * *
15103535 TCAACTCGCCACTCGCAATACGAGTTGA--TTTTTG-ACAACAGAAATTG-AAATTACCTCAG--
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAGCTCAGCA
** *
15103594 CGTGTCCT-GAGGC
66 CGTGAGCTCAAGGC
*
15103607 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAAATTG---AA---AAA-T-
** ** * * *
15103672 AAAATACCTCGGCGTGTGAC-CTGAGGC
57 -AGCT-CAGC-ACGTGAG-CTC-AAGGC
* * * *
15103699 TCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTG-ACAACAGAAATT-AAAAATACCTCAG-
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAAATTGAAAAATAGCTCAGC
** *
15103761 -CGTGTCCT-GAGGC
65 ACGTGAGCTCAAGGC
* * *
15103774 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAACATACGAAAAATTG-ACAATACCTCA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-A-AC-AGAAATTGAAAAATAGCTCA
* * *
15103837 G--CGTG-TCCCGAGGC
63 GCACGTGAGCTCAAGGC
* *
15103851 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATT-AAAAATACCTCAG--
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAGCTCAGCA
** *
15103912 CGTGTCCT-GAGGC
66 CGTGAGCTCAAGGC
* * *
15103925 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAACATACGAAAAATTG-ACAATAACTCA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-A-AC-AGAAATTGAAAAATAGCTCA
* * *
15103988 G--CGTG-TCCCGAGGC
63 GCACGTGAGCTCAAGGC
* * *
15104002 TCAACTCACTTCTCGCAATATGAATTGAATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
15104035 GAAATAAAAC
Statistics
Matches: 860, Mismatches: 123, Indels: 196
0.73 0.10 0.17
Matches are distributed among these distances:
72 30 0.03
73 15 0.02
74 123 0.14
75 42 0.05
76 25 0.03
77 193 0.22
78 11 0.01
79 80 0.09
80 7 0.01
81 9 0.01
82 4 0.00
83 37 0.04
84 20 0.02
85 14 0.02
86 9 0.01
87 22 0.03
88 50 0.06
89 13 0.02
90 58 0.07
91 58 0.07
92 40 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (79 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAGCTCAGCA
CGTGAGCTCAAGGC
Found at i:15103089 original size:14 final size:14
Alignment explanation
Indices: 15103066--15103100 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15103056 TGAGTTGATT
15103066 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
15103079 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
15103093 TTTGAAAA
1 TTTGAAAA
15103101 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:15103148 original size:88 final size:88
Alignment explanation
Indices: 15102995--15103156 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
15102985 ATTTTTTGAA
* * *
15102995 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
15103060 TTGATTTTTGAAAACAGAATTTG
66 TTGATTTTTGAAAACAGAATTTG
** * * *
15103083 AAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGA
1 AAAAACAGAAATTGAAAATACCTCAG-CACGTGACCCAAGGCTCAACTCACATCTCGCAATATGA
15103147 GTTGATTTTT
65 GTTGATTTTT
15103157 TTGAAAAATA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
TTGATTTTTGAAAACAGAATTTG
Found at i:15103396 original size:91 final size:90
Alignment explanation
Indices: 15103236--15103422 Score: 252
Period size: 91 Copynumber: 2.1 Consensus size: 90
15103226 GTTGATTTTT
* * * *
15103236 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
15103301 GAGTTGATTTTTTTGA-AAGGCAGAAA
66 GAGTTGATTTTTTTGACAA--CAGAAA
* * * * *
15103327 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
15103391 CGAGTTGATTTTTTTGACAACAGAAA
65 CGAGTTGATTTTTTTGACAACAGAAA
15103417 TTGAAA
1 TTGAAA
15103423 TTACCTCAGC
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
90 14 0.16
91 69 0.81
92 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTGACAACAGAAA
Found at i:15103464 original size:74 final size:73
Alignment explanation
Indices: 15103331--15103660 Score: 243
Period size: 74 Copynumber: 4.2 Consensus size: 73
15103321 CAGAAATTGA
* * * * *
15103331 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGT
1 AAAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGT
15103396 TGATTTTTTTG
64 TGA-TTTTTTG
* * *
15103407 ACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG
15103472 ATTTTTTG
66 ATTTTTTG
** * * * * * *
15103480 AAAAACAGAAATTGAAAAACGGAAATTGAAAATACATCG-G-CGTGTGACCTGAGGCTCAACTCG
1 -AAAACAGAAATT--------GAAATT--ACCT-CAGCGTGTCCTGAG-GCTCA-ACTC-A----
*
15103543 CCACTCGCAATACGAGTTGA-TTTTTG
47 CCTCTCGCAATACGAGTTGATTTTTTG
* *
15103569 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG
15103634 ATTTTTTTTG
66 A--TTTTTTG
15103644 AAAGACAGAAATTGAAA
1 AAA-ACAGAAATTGAAA
15103661 AACGGAAATT
Statistics
Matches: 198, Mismatches: 31, Indels: 50
0.71 0.11 0.18
Matches are distributed among these distances:
72 18 0.09
73 7 0.04
74 43 0.22
75 8 0.04
76 40 0.20
77 7 0.04
78 6 0.03
79 4 0.02
80 6 0.03
82 6 0.03
83 4 0.02
84 6 0.03
85 7 0.04
86 1 0.01
88 11 0.06
89 6 0.03
90 18 0.09
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (73 bp):
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG
ATTTTTTG
Found at i:15103496 original size:14 final size:14
Alignment explanation
Indices: 15103477--15103511 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
15103467 AGTTGATTTT
15103477 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
15103491 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
15103505 TTGAAAA
1 TTGAAAA
15103512 TACATCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:15103512 original size:164 final size:164
Alignment explanation
Indices: 15103176--15103958 Score: 1130
Period size: 164 Copynumber: 4.8 Consensus size: 164
15103166 ATAAATTGAA
* * * * * * *
15103176 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* * *
15103241 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
**
15103305 TGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 TGA-TTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
*
15103344 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
15103409 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
15103474 TTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
131 TTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
* *
15103508 AAAATACATCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA--TTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
*
15103571 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
15103636 TTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
130 -TTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
15103672 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGA
*
15103737 CAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 CAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
15103802 TTTTTTG--AAAC----A-T-ACGAA---AAATTG
130 TTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
* * * * *
15103826 ACAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
*
15103889 AACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
15103954 TTTTT
131 TTTTT
15103959 TAAACATACG
Statistics
Matches: 577, Mismatches: 32, Indels: 29
0.90 0.05 0.05
Matches are distributed among these distances:
151 80 0.14
152 33 0.06
154 21 0.04
157 3 0.01
158 1 0.00
159 1 0.00
162 71 0.12
163 3 0.01
164 173 0.30
165 44 0.08
167 89 0.15
168 58 0.10
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (164 bp):
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
Found at i:15103564 original size:90 final size:86
Alignment explanation
Indices: 15103413--15103584 Score: 236
Period size: 88 Copynumber: 2.0 Consensus size: 86
15103403 TTTGACAACA
* * * * *
15103413 GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTTT
15103478 TGAAAAACAGAAATTGAAAAACG
65 TG-AAAACAGAAATTGAAAAACG
* *
15103501 GAAATTGAAAATACATCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACATCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
*
15103566 TTGACAACAGAAATTGAAA
64 TTGAAAACAGAAATTGAAA
15103585 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 36 0.49
89 6 0.08
90 32 0.43
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (86 bp):
GAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
GAAAACAGAAATTGAAAAACG
Found at i:15103660 original size:14 final size:14
Alignment explanation
Indices: 15103641--15103675 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15103631 TTGATTTTTT
*
15103641 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
15103655 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
15103669 TTGAAAA
1 TTGAAAA
15103676 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:15103730 original size:92 final size:88
Alignment explanation
Indices: 15103575--15103752 Score: 275
Period size: 92 Copynumber: 2.0 Consensus size: 88
15103565 TTTGACAACA
* *
15103575 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
15103640 TTTGAAAGACAGAAATTGAAAAACG
66 TTTGAAA-ACAGAAATT-AAAAACG
* *
15103665 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
15103730 TTTTTGACAACAGAAATTAAAAA
64 TTTTTGAAAACAGAAATTAAAAA
15103753 TACCTCAGCG
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
90 27 0.33
91 9 0.11
92 45 0.56
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTGAAAACAGAAATTAAAAACG
Found at i:15103833 original size:77 final size:75
Alignment explanation
Indices: 15103666--15104038 Score: 491
Period size: 77 Copynumber: 4.9 Consensus size: 75
15103656 TGAAAAACGG
* * *
15103666 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*** *
15103731 TTTTGACAACAG
64 TTGAAACAACAA
*
15103743 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
15103808 GAAACATACGAA
66 GAAACA-AC-AA
* *
15103820 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
15103885 TG--ACAACAG
65 TGAAACAACAA
*
15103894 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
15103959 TAAACATACGAA
66 GAAACA-AC-AA
* * * * * *
15103971 AAATTGACAATAACTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAATTGA-ATTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
15104035 GAAA
66 GAAA
15104039 TAAAACATCA
Statistics
Matches: 264, Mismatches: 25, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
73 6 0.02
74 57 0.22
75 48 0.18
76 14 0.05
77 132 0.50
78 7 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAACAACAA
Found at i:15103929 original size:151 final size:151
Alignment explanation
Indices: 15103666--15104034 Score: 621
Period size: 151 Copynumber: 2.4 Consensus size: 151
15103656 TGAAAAACGG
* * * * *
15103666 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGACAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
15103731 TTTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
63 TTTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
15103796 AGTTGATTTTTTGAAACATACGAA
128 AGTTGATTTTTTGAAACATACGAA
15103820 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
15103885 TGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
66 TGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
15103950 TGATTTTTTTAAACATACGAA
131 TGATTTTTTGAAACATACGAA
* * * *
15103971 AAATTGACAATAACTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAATTGAATTTT
1 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
15104035 GAAATAAAAC
Statistics
Matches: 205, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
151 151 0.74
152 33 0.16
154 21 0.10
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (151 bp):
AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAACATACGAA
Found at i:15117112 original size:29 final size:30
Alignment explanation
Indices: 15117080--15117137 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
15117070 TTAATACATG
*
15117080 ATAAAATTGTATTTT-TATCTCTAAAAATA
1 ATAAAATTGTATTTTAAATCTCTAAAAATA
* * *
15117109 ATAAATTTTTATTTTAAATCTTTAAAAAT
1 ATAAAATTGTATTTTAAATCTCTAAAAAT
15117138 TTATAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (30 bp):
ATAAAATTGTATTTTAAATCTCTAAAAATA
Found at i:15120554 original size:46 final size:44
Alignment explanation
Indices: 15120462--15120554 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
15120452 TTACAATATT
*
15120462 ATTCCATTCAACCAAACACAAGAATATCATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATATCATTACAATTCTATTCC
* *
15120506 ATTCCATTCAACCAAACA-ATTGAATTATTGATTACAATTCTATTCC
1 ATTCCATTCAACCAAACACA-AGAA-TA-TCATTACAATTCTATTCC
15120552 ATT
1 ATT
15120555 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.49
45 2 0.05
46 19 0.44
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (44 bp):
ATTCCATTCAACCAAACACAAGAATATCATTACAATTCTATTCC
Found at i:15121634 original size:28 final size:28
Alignment explanation
Indices: 15121603--15121658 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
15121593 ATCTGTTAAG
15121603 CTAATTAAATTGTAACAAAACGGTACGT
1 CTAATTAAATTGTAACAAAACGGTACGT
15121631 CTAATTAAATTGTAACAAAACGGTACGT
1 CTAATTAAATTGTAACAAAACGGTACGT
15121659 TTTGAGGGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (28 bp):
CTAATTAAATTGTAACAAAACGGTACGT
Found at i:15132641 original size:7 final size:7
Alignment explanation
Indices: 15132631--15132662 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
15132621 CTTCCTCCCA
15132631 TTCTCTC
1 TTCTCTC
15132638 TTCTCTC
1 TTCTCTC
15132645 TTCTCTC
1 TTCTCTC
15132652 TTCTCTTC
1 TTCTC-TC
15132660 TTC
1 TTC
15132663 AACAGCTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.79
8 5 0.21
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (7 bp):
TTCTCTC
Found at i:15133180 original size:30 final size:30
Alignment explanation
Indices: 15133146--15133205 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
15133136 AGTAAAGATA
15133146 AAATTATATTTAGGCCTCTTGAAAATGAAT
1 AAATTATATTTAGGCCTCTTGAAAATGAAT
15133176 AAATTATATTTAGGCCTCTTGAAAATGAAT
1 AAATTATATTTAGGCCTCTTGAAAATGAAT
15133206 TTTTTATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (30 bp):
AAATTATATTTAGGCCTCTTGAAAATGAAT
Found at i:15150130 original size:3 final size:3
Alignment explanation
Indices: 15150122--15150147 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15150112 CAACATTTTC
15150122 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
15150148 ATTCATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15152727 original size:23 final size:23
Alignment explanation
Indices: 15152701--15152745 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15152691 CTTTCTTCCT
15152701 TCTTCCTCCCATTC-TCTCTTCTC
1 TCTTCCTCCC-TTCTTCTCTTCTC
* *
15152724 TCTTCTTCTCTTCTTCTCTTCT
1 TCTTCCTCCCTTCTTCTCTTCT
15152746 TCAACAGCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (23 bp):
TCTTCCTCCCTTCTTCTCTTCTC
Found at i:15152735 original size:8 final size:8
Alignment explanation
Indices: 15152715--15152747 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
15152705 CCTCCCATTC
15152715 TCTCTTC-
1 TCTCTTCT
15152722 TCTCTTCT
1 TCTCTTCT
15152730 TCTCTTCT
1 TCTCTTCT
15152738 TCTCTTCT
1 TCTCTTCT
15152746 TC
1 TC
15152748 AACAGCTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (8 bp):
TCTCTTCT
Found at i:15153274 original size:32 final size:32
Alignment explanation
Indices: 15153236--15153299 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
15153226 ATTAGTAAAG
15153236 ATAAAATTATATTTAGGCCTCTTGAAAATGAA
1 ATAAAATTATATTTAGGCCTCTTGAAAATGAA
15153268 ATAAAATTATATTTAGGCCTCTTGAAAATGAA
1 ATAAAATTATATTTAGGCCTCTTGAAAATGAA
15153300 TTTTTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (32 bp):
ATAAAATTATATTTAGGCCTCTTGAAAATGAA
Found at i:15156141 original size:14 final size:14
Alignment explanation
Indices: 15156122--15156167 Score: 60
Period size: 13 Copynumber: 3.3 Consensus size: 14
15156112 TAATTTGAAA
15156122 TTTATTTTTTTATT
1 TTTATTTTTTTATT
15156136 TTTA-TTTTTTATT
1 TTTATTTTTTTATT
15156149 TTT-TTGTATTTTATT
1 TTTATT-T-TTTTATT
15156164 TTTA
1 TTTA
15156168 GAAATTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.46
14 5 0.18
15 10 0.36
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (14 bp):
TTTATTTTTTTATT
Found at i:15156146 original size:21 final size:22
Alignment explanation
Indices: 15156122--15156166 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
15156112 TAATTTGAAA
15156122 TTTATTTTTTTAT-TTTTATTT
1 TTTATTTTTTTATATTTTATTT
*
15156143 TTTATTTTTTTGTATTTTATTT
1 TTTATTTTTTTATATTTTATTT
15156165 TT
1 TT
15156167 AGAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.13, C:0.00, G:0.02, T:0.84
Consensus pattern (22 bp):
TTTATTTTTTTATATTTTATTT
Found at i:15156374 original size:20 final size:20
Alignment explanation
Indices: 15156349--15156386 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15156339 AAATAATAAT
15156349 AATTTTAACAAT-TAAAATTG
1 AATTTTAA-AATCTAAAATTG
15156369 AATTTTAAAATCTAAAAT
1 AATTTTAAAATCTAAAAT
15156387 CTAAAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTTTAAAATCTAAAATTG
Found at i:15157471 original size:11 final size:11
Alignment explanation
Indices: 15157455--15157479 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15157445 TATGTATAAT
15157455 ATAAATAATTA
1 ATAAATAATTA
15157466 ATAAATAATTA
1 ATAAATAATTA
15157477 ATA
1 ATA
15157480 TATTTATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATAAATAATTA
Found at i:15158457 original size:36 final size:36
Alignment explanation
Indices: 15158396--15158497 Score: 107
Period size: 39 Copynumber: 2.8 Consensus size: 36
15158386 ATACAATCCT
* *
15158396 CTGCCCTGC-CCACCACTATCACCATCATACAAAAAG
1 CTGCCCT-CTCCACCACCACCACCATCATACAAAAAG
* * * *
15158432 CTGCCCTCTCCATCATCACCGCCATCACTATACAATAAG
1 CTGCCCTCTCCACCACCACCACCAT--C-ATACAAAAAG
15158471 CTGCCCTCTCCACCACCACCACCATCA
1 CTGCCCTCTCCACCACCACCACCATCA
15158498 CCATCATCAC
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
35 1 0.02
36 19 0.36
37 1 0.02
38 1 0.02
39 31 0.58
ACGTcount: A:0.28, C:0.46, G:0.07, T:0.19
Consensus pattern (36 bp):
CTGCCCTCTCCACCACCACCACCATCATACAAAAAG
Found at i:15158474 original size:39 final size:39
Alignment explanation
Indices: 15158422--15158498 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
15158412 TATCACCATC
* * *
15158422 ATACAAAAAGCTGCCCTCTCCATCATCACCGCCATCACT
1 ATACAAAAAGCTGCCCTCTCCACCACCACCACCATCACT
*
15158461 ATACAATAAGCTGCCCTCTCCACCACCACCACCATCAC
1 ATACAAAAAGCTGCCCTCTCCACCACCACCACCATCAC
15158499 CATCATCACC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.31, C:0.44, G:0.06, T:0.18
Consensus pattern (39 bp):
ATACAAAAAGCTGCCCTCTCCACCACCACCACCATCACT
Found at i:15164194 original size:24 final size:24
Alignment explanation
Indices: 15164167--15164215 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
15164157 GTCAGCTTTT
15164167 AAGATTAGTATAATAGTAACTCTA
1 AAGATTAGTATAATAGTAACTCTA
15164191 AAGATTAGTATAATAGTAACTCTA
1 AAGATTAGTATAATAGTAACTCTA
15164215 A
1 A
15164216 CCCTCAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (24 bp):
AAGATTAGTATAATAGTAACTCTA
Found at i:15164244 original size:80 final size:80
Alignment explanation
Indices: 15164111--15164265 Score: 301
Period size: 80 Copynumber: 1.9 Consensus size: 80
15164101 TTTAGCTTTT
*
15164111 AAGATTAGTATAATAGTAACTCTAACCCTCAATATTTATTTAATTTGTCAGCTTTTAAGATTAGT
1 AAGATTAGTATAATAGTAACTCTAACCCTCAATATTTATTTAACTTGTCAGCTTTTAAGATTAGT
15164176 ATAATAGTAACTCTA
66 ATAATAGTAACTCTA
15164191 AAGATTAGTATAATAGTAACTCTAACCCTCAATATTTATTTAACTTGTCAGCTTTTAAGATTAGT
1 AAGATTAGTATAATAGTAACTCTAACCCTCAATATTTATTTAACTTGTCAGCTTTTAAGATTAGT
15164256 ATAATAGTAA
66 ATAATAGTAA
15164266 TTTTAACTCT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (80 bp):
AAGATTAGTATAATAGTAACTCTAACCCTCAATATTTATTTAACTTGTCAGCTTTTAAGATTAGT
ATAATAGTAACTCTA
Found at i:15166366 original size:22 final size:22
Alignment explanation
Indices: 15166340--15166384 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
15166330 GAACATTTTG
15166340 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
15166362 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
15166384 T
1 T
15166385 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:15170968 original size:22 final size:22
Alignment explanation
Indices: 15170940--15170984 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
15170930 AGGGGGAGTG
15170940 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
15170962 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
15170984 T
1 T
15170985 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:15173922 original size:8 final size:8
Alignment explanation
Indices: 15173909--15173976 Score: 50
Period size: 8 Copynumber: 8.1 Consensus size: 8
15173899 AGACTAAATA
15173909 AAATAATT
1 AAATAATT
15173917 AAATAATT
1 AAATAATT
15173925 AAATATCTTATT
1 AAATA----ATT
15173937 AAA-ATATT
1 AAATA-ATT
*
15173945 AAATAAAT
1 AAATAATT
15173953 -AATAATT
1 AAATAATT
**
15173960 ATCTAATT
1 AAATAATT
15173968 AAATAATT
1 AAATAATT
15173976 A
1 A
15173977 TAAAATATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
7 6 0.12
8 34 0.71
9 1 0.02
11 1 0.02
12 6 0.12
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (8 bp):
AAATAATT
Found at i:15173967 original size:43 final size:39
Alignment explanation
Indices: 15173903--15173984 Score: 101
Period size: 43 Copynumber: 2.0 Consensus size: 39
15173893 ATATATAGAC
*
15173903 TAAATAAAATAATTAAATAATTAAATATCTTATTAAAATAT
1 TAAATAAAATAATTAAATAATTAAATA-ATTA-TAAAATAT
**
15173944 TAAATAAATAATAATTATCTAATTAAATAATTATAAAATAT
1 TAAAT-AA-AATAATTAAATAATTAAATAATTATAAAATAT
15173985 CACCAACATC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 13 0.36
42 5 0.14
43 18 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (39 bp):
TAAATAAAATAATTAAATAATTAAATAATTATAAAATAT
Found at i:15177779 original size:30 final size:30
Alignment explanation
Indices: 15177740--15177796 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
15177730 TTTTATAAAT
15177740 AATTAATATTT-AT-TACTTAAAAATATTCAA
1 AATTAATATTTCATATA-TT-AAAATATTCAA
*
15177770 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
15177797 ATTAAGAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTCAA
Found at i:15178298 original size:28 final size:28
Alignment explanation
Indices: 15178257--15178311 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
15178247 ACCAAAATGG
*
15178257 TACATCCAAGCAAGTGGAGGGTGGTGCT
1 TACATCCAAACAAGTGGAGGGTGGTGCT
15178285 TACATCCAAACAAGTGGAGGGTGGTGC
1 TACATCCAAACAAGTGGAGGGTGGTGC
15178312 ATAGGTAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.18, G:0.35, T:0.20
Consensus pattern (28 bp):
TACATCCAAACAAGTGGAGGGTGGTGCT
Found at i:15180845 original size:14 final size:14
Alignment explanation
Indices: 15180826--15180860 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15180816 TGACATTTTT
*
15180826 TTCTAATGATACAA
1 TTCTAACGATACAA
*
15180840 TTCTAACGATACTA
1 TTCTAACGATACAA
15180854 TTCTAAC
1 TTCTAAC
15180861 ATGTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (14 bp):
TTCTAACGATACAA
Found at i:15181653 original size:8 final size:8
Alignment explanation
Indices: 15181640--15181671 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
15181630 AGATTAATTG
15181640 CAACATTA
1 CAACATTA
15181648 CAACATTA
1 CAACATTA
*
15181656 CAATATTA
1 CAACATTA
15181664 CAACATTA
1 CAACATTA
15181672 AAACTTCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (8 bp):
CAACATTA
Found at i:15181766 original size:62 final size:62
Alignment explanation
Indices: 15181687--15181811 Score: 205
Period size: 62 Copynumber: 2.0 Consensus size: 62
15181677 TCGAACAAAC
* * *
15181687 TTTGTAATATAAATTAAATACATTATAACATTAAAACTTGGAATAAACTTCGTAATATAAAT
1 TTTGCAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTCGTAATATAAAT
* *
15181749 TTTGCAATATAAATTAAATATATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAAT
1 TTTGCAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTCGTAATATAAAT
15181811 T
1 T
15181812 AGATACATTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (62 bp):
TTTGCAATATAAATTAAATACATTACAACATTAAAACTTGGAACAAACTTCGTAATATAAAT
Found at i:15185493 original size:43 final size:43
Alignment explanation
Indices: 15185441--15185527 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
15185431 ACCTTACAAA
15185441 TCACAATAAACCTTAAACAAATAATTAATCTAAACACAAAACT
1 TCACAATAAACCTTAAACAAATAATTAATCTAAACACAAAACT
15185484 TCACAATAAACCTTAAACAAATAATTAATCTAAACACAAAACT
1 TCACAATAAACCTTAAACAAATAATTAATCTAAACACAAAACT
15185527 T
1 T
15185528 ACTAACAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (43 bp):
TCACAATAAACCTTAAACAAATAATTAATCTAAACACAAAACT
Found at i:15185807 original size:27 final size:27
Alignment explanation
Indices: 15185769--15185828 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
15185759 GCTGCTTATT
15185769 GATAGGGGTCACCAGTGCCGCCTATCA
1 GATAGGGGTCACCAGTGCCGCCTATCA
* * *
15185796 GATAGGGGTCACCGGTGTCGCCTATTA
1 GATAGGGGTCACCAGTGCCGCCTATCA
15185823 GATAGG
1 GATAGG
15185829 CACCATACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.22
Consensus pattern (27 bp):
GATAGGGGTCACCAGTGCCGCCTATCA
Found at i:15186085 original size:17 final size:19
Alignment explanation
Indices: 15186058--15186095 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
15186048 AATTTATATA
15186058 TATTGTGAAATAAT-TTTT
1 TATTGTGAAATAATATTTT
15186076 TATT-TGAAATAATATTTT
1 TATTGTGAAATAATATTTT
15186094 TA
1 TA
15186096 ATTAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
TATTGTGAAATAATATTTT
Found at i:15186496 original size:17 final size:17
Alignment explanation
Indices: 15186474--15186511 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
15186464 GGGTGGAAAT
15186474 TAAATTATTTGTG-ACAA
1 TAAATTATTT-TGAACAA
15186491 TAAATTATTTTGAACAA
1 TAAATTATTTTGAACAA
15186508 TAAA
1 TAAA
15186512 AGATAGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (17 bp):
TAAATTATTTTGAACAA
Found at i:15186671 original size:22 final size:21
Alignment explanation
Indices: 15186647--15186686 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
15186637 CCCCACCTTT
15186647 TTTTA-ATTTTATATATTTTAA
1 TTTTATATTTTATAT-TTTTAA
15186668 TTTTATATTTTATATTTTT
1 TTTTATATTTTATATTTTT
15186687 CATAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATATTTTATATTTTTAA
Found at i:15186686 original size:15 final size:14
Alignment explanation
Indices: 15186647--15186703 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
15186637 CCCCACCTTT
15186647 TTTTAATTTTATATA
1 TTTTAATTTT-TATA
15186662 TTTTAA-TTTTATA
1 TTTTAATTTTTATA
15186675 TTTTATATTTTTCATA
1 TTTTA-ATTTTT-ATA
* *
15186691 ATTTATTTTTTAT
1 TTTTAATTTTTAT
15186704 TTCATAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
13 9 0.24
14 6 0.16
15 15 0.41
16 7 0.19
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTAATTTTTATA
Found at i:15189980 original size:14 final size:14
Alignment explanation
Indices: 15189935--15189982 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
15189925 TTAAATCATG
*
15189935 AAAACTATAAAATA
1 AAAAATATAAAATA
**
15189949 TAAAAATATAAAGCA
1 -AAAAATATAAAATA
*
15189964 AAATATATAAAATA
1 AAAAATATAAAATA
15189978 AAAAA
1 AAAAA
15189983 AGTAAATGTG
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAAATATAAAATA
Found at i:15191412 original size:23 final size:22
Alignment explanation
Indices: 15191382--15191424 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
15191372 AATCATTATA
15191382 CTTTTA-TTTTCAAGATTTTAGT
1 CTTTTATTTTTC-AGATTTTAGT
15191404 CTTTCTATTTTTCAGATTTTA
1 CTTT-TATTTTTCAGATTTTA
15191425 AAATTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 10 0.53
24 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.60
Consensus pattern (22 bp):
CTTTTATTTTTCAGATTTTAGT
Found at i:15191607 original size:14 final size:14
Alignment explanation
Indices: 15191590--15191633 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
15191580 TTATAAAACT
15191590 TAAATTTTGAAATC
1 TAAATTTTGAAATC
**
15191604 TAAAAGTTG-AAT-
1 TAAATTTTGAAATC
15191616 TAAATTTTGAAATC
1 TAAATTTTGAAATC
15191630 TAAA
1 TAAA
15191634 AGTTGAATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
12 7 0.29
13 6 0.25
14 11 0.46
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.39
Consensus pattern (14 bp):
TAAATTTTGAAATC
Found at i:15191616 original size:21 final size:21
Alignment explanation
Indices: 15191583--15191641 Score: 55
Period size: 26 Copynumber: 2.6 Consensus size: 21
15191573 ATATTAATTA
* *
15191583 TAAAACTTAAATTTTGAAATC
1 TAAAAGTTGAATTTTGAAATC
15191604 TAAAAGTTGAATTAAATTTTGAAATC
1 TAAAAGTTG-----AATTTTGAAATC
15191630 TAAAAGTTGAAT
1 TAAAAGTTGAAT
15191642 AGATTAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
21 10 0.32
26 21 0.68
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.37
Consensus pattern (21 bp):
TAAAAGTTGAATTTTGAAATC
Found at i:15191618 original size:26 final size:26
Alignment explanation
Indices: 15191589--15191641 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15191579 ATTATAAAAC
15191589 TTAAATTTTGAAATCTAAAAGTTGAA
1 TTAAATTTTGAAATCTAAAAGTTGAA
15191615 TTAAATTTTGAAATCTAAAAGTTGAA
1 TTAAATTTTGAAATCTAAAAGTTGAA
15191641 T
1 T
15191642 AGATTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (26 bp):
TTAAATTTTGAAATCTAAAAGTTGAA
Found at i:15191639 original size:14 final size:14
Alignment explanation
Indices: 15191596--15191640 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
15191586 AACTTAAATT
15191596 TTGAAATCTAAAAG
1 TTGAAATCTAAAAG
**
15191610 TTG-AAT-TAAATT
1 TTGAAATCTAAAAG
15191622 TTGAAATCTAAAAG
1 TTGAAATCTAAAAG
15191636 TTGAA
1 TTGAA
15191641 TAGATTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 7 0.28
13 6 0.24
14 12 0.48
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (14 bp):
TTGAAATCTAAAAG
Found at i:15192231 original size:29 final size:27
Alignment explanation
Indices: 15192178--15192240 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
15192168 ACTTAAAATT
* *
15192178 TTTTTAATATATTTCAAAATTTTAATAAA
1 TTTTAAATATATTTCAAAATATT-A-AAA
15192207 TTTTAAATATATTT-AAATATATTAAAA
1 TTTTAAATATATTTCAAA-ATATTAAAA
15192234 TTTTAAA
1 TTTTAAA
15192241 ATTTATTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 10 0.32
28 4 0.13
29 17 0.55
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
TTTTAAATATATTTCAAAATATTAAAA
Found at i:15192239 original size:8 final size:8
Alignment explanation
Indices: 15192188--15192244 Score: 51
Period size: 8 Copynumber: 6.5 Consensus size: 8
15192178 TTTTTAATAT
*
15192188 ATTTCAAA
1 ATTTTAAA
15192196 ATTTTAATAA
1 ATTTT-A-AA
15192206 ATTTTAAA
1 ATTTTAAA
15192214 TATATTTAAA
1 -AT-TTTAAA
*
15192224 TATATTAAA
1 -ATTTTAAA
15192233 ATTTTAAA
1 ATTTTAAA
15192241 ATTT
1 ATTT
15192245 ATTATACTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
8 17 0.40
9 9 0.21
10 16 0.38
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (8 bp):
ATTTTAAA
Found at i:15192292 original size:18 final size:18
Alignment explanation
Indices: 15192178--15192292 Score: 61
Period size: 18 Copynumber: 6.0 Consensus size: 18
15192168 ACTTAAAATT
* *
15192178 TTTTTAATATATTTCAAAA
1 TTTTAAATATA-TTAAAAA
* * *
15192197 TTTTAATAAATTTTAAATA
1 TTTTAA-ATATATTAAAAA
15192216 TATTTAAATATATT-AAAA
1 T-TTTAAATATATTAAAAA
*
15192234 TTTTAAAATTTATTATACTAAA
1 TTTT-AAATATATTA-A--AAA
* * * *
15192256 TTTTTTAATTTTTTTAAAA
1 -TTTTAAATATATTAAAAA
15192275 TTTTAAATATATTAAAAA
1 TTTTAAATATATTAAAAA
15192293 ATATTTTTTT
Statistics
Matches: 72, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
17 3 0.04
18 26 0.36
19 19 0.26
20 9 0.12
21 1 0.01
22 10 0.14
23 4 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTTAAATATATTAAAAA
Found at i:15192359 original size:13 final size:13
Alignment explanation
Indices: 15192341--15192366 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15192331 TATATTAAAA
15192341 TTTTAAAAAATAT
1 TTTTAAAAAATAT
15192354 TTTTAAAAAATAT
1 TTTTAAAAAATAT
15192367 ATTGAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTTAAAAAATAT
Found at i:15192428 original size:17 final size:17
Alignment explanation
Indices: 15192406--15192516 Score: 57
Period size: 17 Copynumber: 6.4 Consensus size: 17
15192396 TATACTTAAT
15192406 ATTTTTTAATATATTTA
1 ATTTTTTAATATATTTA
*
15192423 ATTTTTTAAAAATATATTAA
1 ATTTTTT---AATATATTTA
** * * *
15192443 AAATATTAAAATATTAA
1 ATTTTTTAATATATTTA
** *
15192460 ATTGGTT---ATACTTA
1 ATTTTTTAATATATTTA
15192474 ATATTTTTAATATATTTA
1 AT-TTTTTAATATATTTA
**
15192492 AAATTTTAATATATTTAA
1 ATTTTTTAATATATTT-A
15192510 ATTTTTT
1 ATTTTTT
15192517 TAAGTTTTTT
Statistics
Matches: 68, Mismatches: 18, Indels: 15
0.67 0.18 0.15
Matches are distributed among these distances:
14 7 0.10
15 3 0.04
17 32 0.47
18 13 0.19
20 13 0.19
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTTTTTAATATATTTA
Found at i:15192485 original size:9 final size:9
Alignment explanation
Indices: 15192471--15192540 Score: 54
Period size: 9 Copynumber: 7.8 Consensus size: 9
15192461 TTGGTTATAC
15192471 TTAATATTT
1 TTAATATTT
*
15192480 TTAATATAT
1 TTAATATTT
*
15192489 TTAA-AATT
1 TTAATATTT
15192497 TTAATATATT
1 TTAATAT-TT
* *
15192507 TAAATTTTT
1 TTAATATTT
15192516 TTAAGT-TTT
1 TTAA-TATTT
*
15192525 TTAAAATTT
1 TTAATATTT
*
15192534 TAAATAT
1 TTAATAT
15192541 ATTAGAATTT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
8 6 0.13
9 33 0.70
10 8 0.17
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (9 bp):
TTAATATTT
Found at i:15192497 original size:71 final size:74
Alignment explanation
Indices: 15192347--15192498 Score: 233
Period size: 71 Copynumber: 2.1 Consensus size: 74
15192337 AAAATTTTAA
* * *
15192347 AAAATATTTTTAAAAAATATATTGAATATATTAAAATTTTAAAATTGGTTATACTTAATATTTTT
1 AAAAT-TTTTTAAAAAATATATTAAAAATATTAAAATATTAAAATTGGTTATACTTAATATTTTT
15192412 TAATATATTT
65 TAATATATTT
15192422 --AATTTTTT-AAAAATATATTAAAAATATTAAAATATT-AAATTGGTTATACTTAATA-TTTTT
1 AAAATTTTTTAAAAAATATATTAAAAATATTAAAATATTAAAATTGGTTATACTTAATATTTTTT
15192482 AATATATTT
66 AATATATTT
15192491 AAAATTTT
1 AAAATTTT
15192499 AATATATTTA
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
69 14 0.19
70 19 0.26
71 31 0.43
72 5 0.07
73 3 0.04
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (74 bp):
AAAATTTTTTAAAAAATATATTAAAAATATTAAAATATTAAAATTGGTTATACTTAATATTTTTT
AATATATTT
Done.