Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 53 of 295
Found at i:15815314 original size:29 final size:29
Alignment explanation
Indices: 15815274--15815333 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
15815264 TTTATTTCAT
*
15815274 AATTTAACCCCTCAATTTACACTTTT-CTC
1 AATTTAACCCCT-AATATACACTTTTACTC
* *
15815303 AATTTAATCCCTAATATACATTTTTACTC
1 AATTTAACCCCTAATATACACTTTTACTC
15815332 AA
1 AA
15815334 AATCACTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (29 bp):
AATTTAACCCCTAATATACACTTTTACTC
Found at i:15817841 original size:22 final size:22
Alignment explanation
Indices: 15817813--15817856 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
15817803 TTACATGCTT
15817813 AATTTAGTTATACAAACTTACC
1 AATTTAGTTATACAAACTTACC
15817835 AATTTAGTTATACAAACTTACC
1 AATTTAGTTATACAAACTTACC
15817857 TTGACAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (22 bp):
AATTTAGTTATACAAACTTACC
Found at i:15829660 original size:46 final size:46
Alignment explanation
Indices: 15829593--15829686 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
15829583 AATTTTCGTG
15829593 ATGACAGGTTTTAAATATTTATAAAGAATCATTCTTGAAACTAACT
1 ATGACAGGTTTTAAATATTTATAAAGAATCATTCTTGAAACTAACT
*
15829639 ATGACAGGTTTTAAATATTTATAAAGAATCGTTCTTGAAACTAACT
1 ATGACAGGTTTTAAATATTTATAAAGAATCATTCTTGAAACTAACT
15829685 AT
1 AT
15829687 TATCACGATA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (46 bp):
ATGACAGGTTTTAAATATTTATAAAGAATCATTCTTGAAACTAACT
Found at i:15837555 original size:43 final size:43
Alignment explanation
Indices: 15837507--15837676 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 43
15837497 GTTACAGAGA
15837507 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
15837550 TGTGATTACGTGTAAGACGATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * **
15837594 T-TGATTTCGTGTAAGA-CACTGTCTAGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCA-TGTCTGGGACATTGGCATTGTAT
* * *
15837635 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
15837677 CAAGCTTTAT
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 88 0.85
44 6 0.06
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:15840332 original size:3 final size:3
Alignment explanation
Indices: 15840320--15840350 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
15840310 CAACAACAAC
*
15840320 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
15840351 GGGGCAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:15840332 original size:9 final size:9
Alignment explanation
Indices: 15840293--15840350 Score: 62
Period size: 9 Copynumber: 6.4 Consensus size: 9
15840283 AAGAAAGATA
15840293 AATAACAAT
1 AATAACAAT
* *
15840302 AACAACAAC
1 AATAACAAT
* *
15840311 AACAACAAC
1 AATAACAAT
15840320 AATAACAAT
1 AATAACAAT
*
15840329 AATAATAAT
1 AATAACAAT
*
15840338 AATAATAAT
1 AATAACAAT
15840347 AATA
1 AATA
15840351 GGGGCAACAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (9 bp):
AATAACAAT
Found at i:15841078 original size:21 final size:20
Alignment explanation
Indices: 15841052--15841101 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
15841042 TCCAAAAAAT
*
15841052 ACCCTTTTTAGCCTCGTTTTA
1 ACCCTTTTTAACCT-GTTTTA
*
15841073 ACCCTTTTTAACCTTTTTTA
1 ACCCTTTTTAACCTGTTTTA
*
15841093 AACCTTTTT
1 ACCCTTTTT
15841102 CACCCTGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.18, C:0.26, G:0.04, T:0.52
Consensus pattern (20 bp):
ACCCTTTTTAACCTGTTTTA
Found at i:15841083 original size:10 final size:10
Alignment explanation
Indices: 15841052--15841107 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
15841042 TCCAAAAAAT
15841052 ACCCTTTTTA
1 ACCCTTTTTA
* *
15841062 GCCTCGTTTTA
1 ACC-CTTTTTA
15841073 ACCCTTTTTA
1 ACCCTTTTTA
*
15841083 ACCTTTTTTA
1 ACCCTTTTTA
* *
15841093 AACCTTTTTC
1 ACCCTTTTTA
15841103 ACCCT
1 ACCCT
15841108 GATTTGAAGT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
10 28 0.78
11 8 0.22
ACGTcount: A:0.18, C:0.30, G:0.04, T:0.48
Consensus pattern (10 bp):
ACCCTTTTTA
Found at i:15841291 original size:38 final size:38
Alignment explanation
Indices: 15841240--15841316 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
15841230 CGGGGCAAGT
15841240 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
1 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
15841278 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
1 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
15841316 A
1 A
15841317 GTAGATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (38 bp):
AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
Found at i:15842059 original size:26 final size:26
Alignment explanation
Indices: 15842030--15842083 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15842020 CATAAAACTA
15842030 ATTAATGATCATTAAACATATCTTCT
1 ATTAATGATCATTAAACATATCTTCT
15842056 ATTAATGATCATTAAACATATCTTCT
1 ATTAATGATCATTAAACATATCTTCT
15842082 AT
1 AT
15842084 CTCTCCTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.15, G:0.04, T:0.43
Consensus pattern (26 bp):
ATTAATGATCATTAAACATATCTTCT
Found at i:15845426 original size:46 final size:46
Alignment explanation
Indices: 15845359--15845449 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
15845349 CTAGGAGTTA
15845359 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATCT
1 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATCT
15845405 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATC
1 CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATC
15845450 CTAATAAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (46 bp):
CAATTTCTCTCAATTGAACAAAGAAAAAACAATTAAAATTCTATCT
Found at i:15854113 original size:16 final size:16
Alignment explanation
Indices: 15854094--15854133 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
15854084 CATGATCCTA
*
15854094 TTGAAACACGAGAATT
1 TTGAAACACGAAAATT
15854110 TTGAAAACACGAAAATT
1 TTG-AAACACGAAAATT
15854127 TTGAAAC
1 TTGAAAC
15854134 TTGAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.25
Consensus pattern (16 bp):
TTGAAACACGAAAATT
Found at i:15854139 original size:16 final size:17
Alignment explanation
Indices: 15854097--15854258 Score: 73
Period size: 18 Copynumber: 9.1 Consensus size: 17
15854087 GATCCTATTG
*
15854097 AAACACGAGAATTTTGA
1 AAACACGAAAATTTTGA
15854114 AAACACGAAAATTTTG-
1 AAACACGAAAATTTTGA
** *
15854130 AAACTTGAAAATATTTTTTTA
1 AAACACG-AAA-A--TTTTGA
* * *
15854151 AAACCCGAGAGATTGTGA
1 AAACACGA-AAATTTTGA
*
15854169 AAACACAAAAATTCTTGA
1 AAACACGAAAATT-TTGA
*
15854187 AAAC-CTGAGAATCTTTG-
1 AAACAC-GAAAAT-TTTGA
**
15854204 AAAC-CTGAGAAA-TTAAA
1 AAACAC-GA-AAATTTTGA
*
15854221 AAAAACGAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
15854239 AAACACGAAAATTTTTGA
1 AAACACGAAAA-TTTTGA
15854257 AA
1 AA
15854259 CCCGAATTTT
Statistics
Matches: 109, Mismatches: 22, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
16 10 0.09
17 36 0.33
18 50 0.46
19 1 0.01
20 6 0.06
21 6 0.06
ACGTcount: A:0.49, C:0.12, G:0.13, T:0.27
Consensus pattern (17 bp):
AAACACGAAAATTTTGA
Found at i:15855736 original size:29 final size:29
Alignment explanation
Indices: 15855704--15855818 Score: 124
Period size: 30 Copynumber: 3.9 Consensus size: 29
15855694 GTAATTTTTA
*
15855704 GAAAATTTAGGGTTAAAATGCAATTTAAG
1 GAAAATTTAGGGTTAAAATGAAATTTAAG
* ** * *
15855733 GAAAGTTTAGGGGTCGAATTGAAATTTAAA
1 GAAAATTTA-GGGTTAAAATGAAATTTAAG
*
15855763 GAAATTTTAGGGTTAAAATGAAATTT-AG
1 GAAAATTTAGGGTTAAAATGAAATTTAAG
*
15855791 GAAAAGTTTAAGGGTTAAAATGTAATTT
1 GAAAA-TTT-AGGGTTAAAATGAAATTT
15855819 TTTTATTTTT
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
28 5 0.07
29 25 0.36
30 40 0.57
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.33
Consensus pattern (29 bp):
GAAAATTTAGGGTTAAAATGAAATTTAAG
Found at i:15855818 original size:59 final size:59
Alignment explanation
Indices: 15855688--15855818 Score: 156
Period size: 59 Copynumber: 2.2 Consensus size: 59
15855678 CTTCTAGAGC
* ** * *
15855688 TAAAGTGTAATTTTTAGAAAATTTAGGGTTAAAATGCAATTTAAGGAAAGTTTAGGGGT
1 TAAAATGTAATTTAAAGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAAGGGT
** * * *
15855747 CGAATTGAAATTTAAAGAAATTTTAGGGTTAAAATGAAATTT-AGGAAAAGTTTAAGGGT
1 TAAAATGTAATTTAAAGAAAATTTAGGGTTAAAATGAAATTTAAGG-AAAGTTTAAGGGT
15855806 TAAAATGTAATTT
1 TAAAATGTAATTT
15855819 TTTTATTTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
58 3 0.05
59 55 0.95
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.35
Consensus pattern (59 bp):
TAAAATGTAATTTAAAGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAAGGGT
Found at i:15859589 original size:78 final size:77
Alignment explanation
Indices: 15859372--15859730 Score: 449
Period size: 79 Copynumber: 4.6 Consensus size: 77
15859362 TGATATTTTT
*
15859372 ATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
15859435 GAGGTATTTTCA
66 GAGGTATTTTCA
* * * * * *
15859447 ACTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCACGGGTTACACG
1 ATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG
*
15859512 CCGAGGTACTTTTCA
64 CTGAGGTA-TTTTCA
*
15859527 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGATG-CTCAGGTCACACGC
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTCAGGTCACACGC
15859591 TGAGGTATTTTCA
65 TGAGGTATTTTCA
* * * *
15859604 ATTTCCGTTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCTCAGGTCACATG
1 ATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG
*
15859669 CTAAGGTATTTTCA
64 CTGAGGTATTTTCA
* * * *
15859683 ATTTTTTGCTTTTTC--AAAGATCAACTCATAATCCGAGAGGTGAGTTGA
1 A-TTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
15859731 ACTTCGGGTC
Statistics
Matches: 247, Mismatches: 26, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
75 11 0.04
77 46 0.19
78 53 0.21
79 111 0.45
80 20 0.08
81 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (77 bp):
ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
GAGGTATTTTCA
Found at i:15859597 original size:157 final size:154
Alignment explanation
Indices: 15859372--15859730 Score: 495
Period size: 157 Copynumber: 2.3 Consensus size: 154
15859362 TGATATTTTT
*
15859372 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
* * *
15859437 GGTATTTTCAACTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCAC
66 GGTATTTTCAACTTCCATTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAACCCAC
* * *
15859502 GGGTTACACGCCGAGGTACTTTTCA
131 AGGTCACACGCCAAGGTA-TTTTCA
*
15859527 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGATG-CTCAGGTCACACGC
1 ATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCCTCAGGTCACACGC
* * *
15859591 TGAGGTATTTTCAATTTCCGTTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAAGC
63 TGAGGTATTTTCAACTTCCATTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAACC
* * *
15859656 CTCAGGTCACATGCTAAGGTATTTTCA
128 CACAGGTCACACGCCAAGGTATTTTCA
* * * *
15859683 ATTTTTTGCTTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGA
1 A-TTTCTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
15859731 ACTTCGGGTC
Statistics
Matches: 180, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
155 12 0.07
156 37 0.21
157 125 0.69
158 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (154 bp):
ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGA
GGTATTTTCAACTTCCATTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTAACCCAC
AGGTCACACGCCAAGGTATTTTCA
Found at i:15859943 original size:18 final size:19
Alignment explanation
Indices: 15859920--15859962 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
15859910 AAAATTTCAA
15859920 AAAAAATAAAAT-AAAAAT
1 AAAAAATAAAATGAAAAAT
* *
15859938 AAAAAA-ATATTGAAAAAT
1 AAAAAATAAAATGAAAAAT
15859956 AAAAAAT
1 AAAAAAT
15859963 TGCATTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (19 bp):
AAAAAATAAAATGAAAAAT
Found at i:15860000 original size:30 final size:30
Alignment explanation
Indices: 15859966--15860074 Score: 123
Period size: 30 Copynumber: 3.7 Consensus size: 30
15859956 AAAAAATTGC
15859966 ATTTTGACCCCTAAACTTTTCTTAAATTTT
1 ATTTTGACCCCTAAACTTTTCTTAAATTTT
*
15859996 ATTTTGACCCTTAAAC-TTTCTTTAAATTTT
1 ATTTTGACCCCTAAACTTTTC-TTAAATTTT
* * * * **
15860026 ATTTTAACACCTAAGCTTTCCTTAAATTAC
1 ATTTTGACCCCTAAACTTTTCTTAAATTTT
*
15860056 ATTTTGA-CCCTAAATTTTT
1 ATTTTGACCCCTAAACTTTT
15860075 TGAAAATTAC
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
29 12 0.19
30 49 0.77
31 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
ATTTTGACCCCTAAACTTTTCTTAAATTTT
Found at i:15860104 original size:29 final size:29
Alignment explanation
Indices: 15860049--15860104 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
15860039 AGCTTTCCTT
* * **
15860049 AAATTACATTTTGACCCTAAATTTTTTGA
1 AAATTACACTTTGACCCCAAAAGTTTTGA
*
15860078 AAATTACACTTTGGCCCCAAAAGTTTT
1 AAATTACACTTTGACCCCAAAAGTTTT
15860105 ACTGCATTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (29 bp):
AAATTACACTTTGACCCCAAAAGTTTTGA
Found at i:15869164 original size:17 final size:18
Alignment explanation
Indices: 15869068--15869163 Score: 74
Period size: 18 Copynumber: 5.4 Consensus size: 18
15869058 ACCCAAGAGA
*
15869068 TTTTGAAAACACAAAAAT
1 TTTTGAAAACACGAAAAT
* *
15869086 TCTTGAAAAC-CTGAGAAT
1 TTTTGAAAACAC-GAAAAT
* *
15869104 CTTTG-AAACTCGAGAAA-
1 TTTTGAAAACACGA-AAAT
** *
15869121 -TTAAAAAAAACGAAAAT
1 TTTTGAAAACACGAAAAT
15869138 TTTTGAAAACACGAAAAT
1 TTTTGAAAACACGAAAAT
15869156 TTTTGAAA
1 TTTTGAAA
15869164 CCTGAATTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
16 5 0.08
17 13 0.22
18 41 0.69
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.27
Consensus pattern (18 bp):
TTTTGAAAACACGAAAAT
Found at i:15870748 original size:30 final size:31
Alignment explanation
Indices: 15870644--15870760 Score: 118
Period size: 30 Copynumber: 3.9 Consensus size: 31
15870634 TGTAATTTTT
* *
15870644 AGAAAATTTA-GGGTCAAAATGCAA-TTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
* ** * *
15870673 AGAAAGTTAAGGGGTTGAAGTGGAA-TTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
*
15870703 AGAAAGTTT-GGGGTCAAAATGAAATTTTAG
1 AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
*
15870733 A-AAAGTTTAGGGGTCAAAATGTAATTTT
1 AGAAAGTTTAGGGGTCAAAATGAAATTTT
15870761 TTATTTTCAA
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
29 26 0.36
30 46 0.64
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (31 bp):
AGAAAGTTTAGGGGTCAAAATGAAATTTTAA
Found at i:15870759 original size:59 final size:59
Alignment explanation
Indices: 15870629--15870759 Score: 147
Period size: 59 Copynumber: 2.2 Consensus size: 59
15870619 CTTCTGGAGC
** *
15870629 CAAAGTGTAATTTTTAGAAAATTTAGGGTCAAAATGCAATTTAAAGAAAGTTAAGGGGT
1 CAAAGTGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAAGAAAGTTAAGGGGT
** * * * * *
15870688 TGAAGTGGAATTTAAAGAAAGTTTGGGGTCAAAATGAAATTT-TAGAAAAGTTTAGGGGT
1 CAAAGTGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAAG-AAAGTTAAGGGGT
*
15870747 CAAAATGTAATTT
1 CAAAGTGTAATTT
15870760 TTTATTTTCA
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
58 2 0.04
59 55 0.96
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (59 bp):
CAAAGTGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAAGAAAGTTAAGGGGT
Found at i:15870784 original size:6 final size:6
Alignment explanation
Indices: 15870775--15870803 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
15870765 TTTCAAAAAT
15870775 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
15870804 TTGAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:15877350 original size:14 final size:14
Alignment explanation
Indices: 15877327--15877360 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
15877317 TTTTGATACT
15877327 AAAT-TTAATTATA
1 AAATATTAATTATA
15877340 AAATATTAATTATA
1 AAATATTAATTATA
15877354 AAATATT
1 AAATATT
15877361 TTTAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAATATTAATTATA
Found at i:15878377 original size:18 final size:20
Alignment explanation
Indices: 15878355--15878408 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
15878345 ATAAAATTAT
15878355 TAAAAATTATTT-AAATCCA
1 TAAAAATTATTTAAAATCCA
*
15878374 -AAAATTTATTTAAAATCCA
1 TAAAAATTATTTAAAATCCA
*
15878393 TAAAAA-CATTTAAAAT
1 TAAAAATTATTTAAAAT
15878409 TACCAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 10 0.33
19 16 0.53
20 4 0.13
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAAATTATTTAAAATCCA
Found at i:15878438 original size:17 final size:18
Alignment explanation
Indices: 15878403--15878442 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
15878393 TAAAAACATT
*
15878403 TAAAATTACCAAATTTTA
1 TAAAATTACCAAATATTA
*
15878421 TAAAATTA-GAAATATTA
1 TAAAATTACCAAATATTA
15878438 TAAAA
1 TAAAA
15878443 ACTTACAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (18 bp):
TAAAATTACCAAATATTA
Found at i:15879233 original size:22 final size:21
Alignment explanation
Indices: 15879205--15879245 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
15879195 TTGAGAACGA
15879205 ATTGATTCTTTATTATTTTTGG
1 ATTGATTCTTT-TTATTTTTGG
*
15879227 ATTGATTCTTTTTTTTTTT
1 ATTGATTCTTTTTATTTTT
15879246 CAAATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.15, C:0.05, G:0.10, T:0.71
Consensus pattern (21 bp):
ATTGATTCTTTTTATTTTTGG
Found at i:15879965 original size:32 final size:33
Alignment explanation
Indices: 15879924--15879988 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
15879914 GTAATTCATC
15879924 GTCATTA-TTTTTAATTAAATCAGTCAAAATTA
1 GTCATTATTTTTTAATTAAATCAGTCAAAATTA
*
15879956 GTCATTATTTTTTAATTAAATCAGTCCAAATTA
1 GTCATTATTTTTTAATTAAATCAGTCAAAATTA
15879989 AGGTTTTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 7 0.23
33 24 0.77
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (33 bp):
GTCATTATTTTTTAATTAAATCAGTCAAAATTA
Found at i:15899546 original size:41 final size:41
Alignment explanation
Indices: 15899462--15899546 Score: 125
Period size: 41 Copynumber: 2.1 Consensus size: 41
15899452 TGAGTAGACA
* *
15899462 CACGGGCGTGTGTCTCAACGTGTATGACACACATCCATACG
1 CACGGGCATGTGTCTCAACGTGTATGACACACAGCCATACG
* * *
15899503 CACGGGCATGTGTCTCAACGTGTGTGACACACGGCCATGCG
1 CACGGGCATGTGTCTCAACGTGTATGACACACAGCCATACG
15899544 CAC
1 CAC
15899547 AGAAGTGTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (41 bp):
CACGGGCATGTGTCTCAACGTGTATGACACACAGCCATACG
Found at i:15902932 original size:16 final size:16
Alignment explanation
Indices: 15902911--15902960 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
15902901 TGACCATTTG
15902911 GGCTTGTGGGCCACAC
1 GGCTTGTGGGCCACAC
*
15902927 GGCTTGTGGTCCACAC
1 GGCTTGTGGGCCACAC
*
15902943 GGCGTGTGGGCCCACAC
1 GGCTTGTGGG-CCACAC
15902960 G
1 G
15902961 AGTAAAGCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 23 0.77
17 7 0.23
ACGTcount: A:0.12, C:0.32, G:0.38, T:0.18
Consensus pattern (16 bp):
GGCTTGTGGGCCACAC
Found at i:15905138 original size:25 final size:25
Alignment explanation
Indices: 15905086--15905139 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
15905076 GGGATAGGAC
* * *
15905086 ATGATATGATATGTTATGATTCGTT
1 ATGATATGATAAGATATGATTCGGT
*
15905111 ATGATATGATAAGATATGATTTGGT
1 ATGATATGATAAGATATGATTCGGT
15905136 ATGA
1 ATGA
15905140 AATCTGATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (25 bp):
ATGATATGATAAGATATGATTCGGT
Found at i:15907318 original size:31 final size:28
Alignment explanation
Indices: 15907278--15907335 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 28
15907268 CTGATTTTAG
15907278 AAAATCATAAAATTATAATTACAAAAAATA
1 AAAATCATAAAATTATAA-TA-AAAAAATA
*
15907308 AAAATACATAAAGTTATAATAAAAAAAT
1 AAAAT-CATAAAATTATAATAAAAAAAT
15907336 CAAGGTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.27
30 7 0.27
31 12 0.46
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (28 bp):
AAAATCATAAAATTATAATAAAAAAATA
Found at i:15911385 original size:20 final size:20
Alignment explanation
Indices: 15911343--15911387 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15911333 TTTACAACTT
* *
15911343 TTTTATTAGTTGTTTATACA
1 TTTTATTAGTTGATCATACA
15911363 TTTTATTAGTTTGATCATA-A
1 TTTTATTAG-TTGATCATACA
15911383 TTTTA
1 TTTTA
15911388 AATTTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.27, C:0.04, G:0.09, T:0.60
Consensus pattern (20 bp):
TTTTATTAGTTGATCATACA
Found at i:15915134 original size:21 final size:21
Alignment explanation
Indices: 15915108--15915148 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
15915098 ATCTGCTCAA
*
15915108 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
15915129 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
15915149 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:15931088 original size:22 final size:22
Alignment explanation
Indices: 15931050--15931097 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
15931040 TCTACTTAAA
15931050 AATTATAAAGTT-AAAAATTAT
1 AATTATAAAGTTAAAAAATTAT
*
15931071 CAATTATCAA-TTATAAAAATTAT
1 -AATTATAAAGTTA-AAAAATTAT
15931094 AATT
1 AATT
15931098 TTATAATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 2 0.09
22 12 0.52
23 9 0.39
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTATAAAGTTAAAAAATTAT
Found at i:15933039 original size:21 final size:19
Alignment explanation
Indices: 15933015--15933063 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
15933005 AGTATTTGTG
15933015 ATTATTTTGTTTCAATAAAT
1 ATTATTTTGTTTCAA-AAAT
15933035 A--ATTATT-TTTCAAAAAT
1 ATTATT-TTGTTTCAAAAAT
15933052 ATTATTTTGTTT
1 ATTATTTTGTTT
15933064 TGATATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
17 5 0.20
18 11 0.44
19 8 0.32
20 1 0.04
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (19 bp):
ATTATTTTGTTTCAAAAAT
Found at i:15933057 original size:16 final size:18
Alignment explanation
Indices: 15933024--15933059 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
15933014 GATTATTTTG
15933024 TTTCAATAAATAATTATT
1 TTTCAATAAATAATTATT
15933042 TTTCAA-AAAT-ATTATT
1 TTTCAATAAATAATTATT
15933058 TT
1 TT
15933060 GTTTTGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTCAATAAATAATTATT
Found at i:15934814 original size:24 final size:24
Alignment explanation
Indices: 15934774--15934823 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
15934764 TAATTAGGTC
15934774 TTTTTATTTTATAACTT-TATAATT
1 TTTTTATTTTATAACTTGTAT-ATT
*
15934798 TTTTTA-TTTATTTACTTGTATATT
1 TTTTTATTTTA-TAACTTGTATATT
15934822 TT
1 TT
15934824 AAGCAACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 4 0.17
24 16 0.70
25 3 0.13
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTTTATTTTATAACTTGTATATT
Found at i:15935335 original size:37 final size:37
Alignment explanation
Indices: 15935285--15935358 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
15935275 CATATATTTC
15935285 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
1 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
15935322 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
1 CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
15935359 TAAATATGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (37 bp):
CTTAAATCCATGTGTTTTAACATATATTTTTGCTATT
Found at i:15936491 original size:131 final size:129
Alignment explanation
Indices: 15936134--15936638 Score: 382
Period size: 131 Copynumber: 3.9 Consensus size: 129
15936124 TAAAAATTCT
* * *
15936134 TTAAAACGAAGGCGATATTCG--ATTCATGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTT
1 TTAAAACGAAGGCGATATTCGACATT--TGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTT
** * *
15936197 GCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCTTTTAGAATTTCACCCATGTCTTTTAAAAG
64 GCAATTTCTCGTTTGCTCAAA-TAATCGAATATCC-CTTAGAATTTCACTCATGTCTTTTAAAA-
*
15936262 TCCC
126 TCCA
* * * * * *
15936266 TT-AAACGAAGGCGATATTTGATATTTGGCGACTCGCGGAATCGTGCCCTAACGTGTTGGGTTGC
1 TTAAAACGAAGGCGATATTCGACATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGC
* * * * * *
15936330 AATTTAGT-GTTCGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATGTCTTCTAAAGAT
66 AATTT-CTCGTTTGC-TCAAATAATCGAATATCCCTT-AGAATTTCACTCATGTCTTTTAAA-AT
15936394 CCA
127 CCA
** * * * *
15936397 TTAAAACGAAGGTAATATTCGGCATTTGGCAATTTG-GGAATCATGCCCTATCGTGCTGGGTTGT
1 TTAAAACGAAGGCGATATTCGACATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGC
* * **
15936461 GATTTCTCGTTTGCTCAACACAATCGAATATTCCCTTAGGTTTTCACTCATGT-TTATTAAAAAT
66 AATTTCTCGTTTGCTCAA-ATAATCGAATA-TCCCTTAGAATTTCACTCATGTCTT-TT-AAAAT
*
15936525 -CT
127 CCA
* * * * ** *
15936527 TTCAAAACGAAGGCGATGTTCGACGTTTGGCGATTTG-AAAATCGA-GCCCTATCGTGCTGGGTT
1 TT-AAAACGAAGGCGATATTCGACATTTGGCAATTCGCGGAATC-ATGCCCTAACGTGCTGGGTT
** * * * *
15936590 GCGCTTTTTCATTTG-TCCTAAATAATCGAATATCTCTTGGGAATTTCAC
64 GCAATTTCTCGTTTGCT-C-AAATAATCGAATATCCCTT-AGAATTTCAC
15936639 ACGTATTTTC
Statistics
Matches: 301, Mismatches: 55, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
130 17 0.06
131 236 0.78
132 45 0.15
133 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (129 bp):
TTAAAACGAAGGCGATATTCGACATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGC
AATTTCTCGTTTGCTCAAATAATCGAATATCCCTTAGAATTTCACTCATGTCTTTTAAAATCCA
Found at i:15939588 original size:44 final size:44
Alignment explanation
Indices: 15939525--15939634 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
15939515 CTGATCACAT
15939525 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
* *
15939569 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
15939613 TTATCACTTGTCACTGATCAGA
1 TTATCACTTGTCACTGATCAGA
15939635 AGTACTCAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (44 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
Found at i:15947331 original size:51 final size:51
Alignment explanation
Indices: 15947260--15947420 Score: 295
Period size: 51 Copynumber: 3.2 Consensus size: 51
15947250 CTGATCACAT
*
15947260 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
15947311 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
15947362 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
15947413 TTGTCACT
1 TTATCACT
15947421 GATCAAAAGT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 107 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:15948958 original size:16 final size:16
Alignment explanation
Indices: 15948937--15948967 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15948927 GCCGAAATAG
15948937 ACCCTCTTTCTTTTAA
1 ACCCTCTTTCTTTTAA
15948953 ACCCTCTTTCTTTTA
1 ACCCTCTTTCTTTTA
15948968 TCATTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (16 bp):
ACCCTCTTTCTTTTAA
Found at i:15950295 original size:9 final size:9
Alignment explanation
Indices: 15950261--15950298 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
15950251 CCATCCTTAT
*
15950261 AAAATATTA
1 AAAATAATA
15950270 AAAATAATTA
1 AAAATAA-TA
15950280 AAAATAATA
1 AAAATAATA
15950289 AAAATAATA
1 AAAATAATA
15950298 A
1 A
15950299 TATAAGGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 18 0.67
10 9 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAATAATA
Found at i:15951202 original size:10 final size:10
Alignment explanation
Indices: 15951183--15951232 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
15951173 TTAAATTCTA
15951183 AAAGATAAAT
1 AAAGATAAAT
15951193 ACAA-ATAAAT
1 A-AAGATAAAT
*
15951203 AAAGATAATT
1 AAAGATAAAT
15951213 AAAGATAAAT
1 AAAGATAAAT
15951223 GAAA-ATAAAT
1 -AAAGATAAAT
15951233 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:15951282 original size:14 final size:13
Alignment explanation
Indices: 15951246--15951283 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
15951236 AAAATTAAAT
15951246 CTAAATAATTATC
1 CTAAATAATTATC
*
15951259 CTTAATAATTATC
1 CTAAATAATTATC
15951272 CTAATATAATTA
1 CTAA-ATAATTA
15951284 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:15954194 original size:3 final size:3
Alignment explanation
Indices: 15954180--15954477 Score: 234
Period size: 3 Copynumber: 100.3 Consensus size: 3
15954170 AATTAAAAAG
* * * * *
15954180 ATA ATG ATA ATA ATA ATA ATA ATA ACA ACA ACA ACA ATA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * *
15954226 ATA ATA ATA TTA AAA AT- ATA ATA ATA GTA ATA ATA ATA ATG ATA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * *
15954274 ATA ATA ATA GTA A-A A-A ATA ATA GTA ATA ATA ATG ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
15954320 A-A AAA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA GTA AAA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
15954367 ATA CTA GTA ATA ATA ATA ATA ATG ATA ATAA ATA GTA ATA GTA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
* * * * *
15954412 A-A ATA ATA ATA GTA A-A AAA ATA ATA CTA GTA ATA ATA ATA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
15954458 ATTA ATTA AT- TTA ATA ATA A
1 A-TA A-TA ATA ATA ATA ATA A
15954478 AGTAGCTAAA
Statistics
Matches: 239, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
2 15 0.06
3 209 0.87
4 15 0.06
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:15956054 original size:21 final size:21
Alignment explanation
Indices: 15956028--15956082 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
15956018 TTAGGGTCAT
15956028 AAATAATTAATTAAAGTATTA
1 AAATAATTAATTAAAGTATTA
*
15956049 AAATAATATAA-TAAGGTATTA
1 AAATAAT-TAATTAAAGTATTA
**
15956070 TTAT-ATTAATTAA
1 AAATAATTAATTAA
15956083 TCTAAATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.10
20 5 0.17
21 18 0.62
22 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAATAATTAATTAAAGTATTA
Found at i:15959624 original size:25 final size:24
Alignment explanation
Indices: 15959594--15959640 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
15959584 AATCATTTTT
*
15959594 TCATTTTGGCCCTTATATTTTTAGG
1 TCATTTTGGCCCTCA-ATTTTTAGG
15959619 TCATTTTGGCCCTCAATTTTTA
1 TCATTTTGGCCCTCAATTTTTA
15959641 AAATTTACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (24 bp):
TCATTTTGGCCCTCAATTTTTAGG
Found at i:15960532 original size:40 final size:40
Alignment explanation
Indices: 15960477--15960623 Score: 195
Period size: 40 Copynumber: 3.7 Consensus size: 40
15960467 CATTTGGATA
*
15960477 AAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* *
15960517 AAAAACGCCGCTATAGATCGAGCATTAGTGGCGTTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
** * * * * *
15960557 AAAAATACCGGTATAAATCGAGAATTAGCAGCACTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
*
15960597 AAAAACGCCACTATAGATCGAGCATTA
1 AAAAACGCCGCTATAGATCGAGCATTA
15960624 AAAATTAAGC
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:15960828 original size:99 final size:99
Alignment explanation
Indices: 15960655--15960840 Score: 255
Period size: 99 Copynumber: 1.9 Consensus size: 99
15960645 GTTTTATGCT
*** * *
15960655 GAGCTTTAGTGGCATTAGCGGTGCTTTTTGAAAAACGCCACTATAGATCGAGTATTAGCTGCACT
1 GAGCTTTAGTGGCATTAGCGACACTTTTTGAAAAACACCACTATAGATCGAGTATTAGCGGCACT
* * *
15960720 TTTTGAAAAACGCTGCAAAAAATTTCAGTAAGAC
66 TTATCAAAAACGCCGCAAAAAATTTCAGTAAGAC
* * * * *
15960754 GAGCTTTTGTGGCATTAGTGACACTTTTTGAAAAACACCGCTATAGATTGAGTTTTAGCGGCACT
1 GAGCTTTAGTGGCATTAGCGACACTTTTTGAAAAACACCACTATAGATCGAGTATTAGCGGCACT
15960819 TTATCAAAAACGCCGCAAAAAA
66 TTATCAAAAACGCCGCAAAAAA
15960841 CATGTTATTT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
99 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (99 bp):
GAGCTTTAGTGGCATTAGCGACACTTTTTGAAAAACACCACTATAGATCGAGTATTAGCGGCACT
TTATCAAAAACGCCGCAAAAAATTTCAGTAAGAC
Found at i:15961158 original size:7 final size:7
Alignment explanation
Indices: 15961137--15961272 Score: 82
Period size: 7 Copynumber: 19.4 Consensus size: 7
15961127 TTGATTATCA
*
15961137 TTATAGT
1 TTATGGT
*
15961144 TTAGGGT
1 TTATGGT
15961151 TTATGGT
1 TTATGGT
*
15961158 TTA-GGG
1 TTATGGT
*
15961164 TTATAGT
1 TTATGGT
*
15961171 TTAAGGT
1 TTATGGT
15961178 TTATGGT
1 TTATGGT
*
15961185 TTAGGGT
1 TTATGGT
* *
15961192 ATATAGT
1 TTATGGT
15961199 TTA-GGAT
1 TTATGG-T
*
15961206 TTAAGGT
1 TTATGGT
*
15961213 TTAGGAGT
1 TTATG-GT
15961221 TACTAT--T
1 T--TATGGT
*
15961228 TTAAGGT
1 TTATGGT
*
15961235 TTATGGA
1 TTATGGT
*
15961242 TTATGGA
1 TTATGGT
*
15961249 TTATGGA
1 TTATGGT
15961256 TTATGGT
1 TTATGGT
15961263 TTATGGT
1 TTATGGT
15961270 TTA
1 TTA
15961273 AGTGTTGGGG
Statistics
Matches: 100, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
5 2 0.02
6 6 0.06
7 85 0.85
8 5 0.05
10 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:15961159 original size:14 final size:14
Alignment explanation
Indices: 15961137--15961272 Score: 107
Period size: 14 Copynumber: 9.7 Consensus size: 14
15961127 TTGATTATCA
*
15961137 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
15961151 TTATGGTTTAGGG-
1 TTATGGTTTAGGGT
* *
15961164 TTATAGTTTAAGGT
1 TTATGGTTTAGGGT
15961178 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* * *
15961192 ATATAGTTTAGGAT
1 TTATGGTTTAGGGT
*
15961206 TTAAGGTTTAGGAGT
1 TTATGGTTTAGG-GT
*
15961221 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
* * *
15961235 TTATGGATTATGGA
1 TTATGGTTTAGGGT
* *
15961249 TTATGGATTATGGT
1 TTATGGTTTAGGGT
15961263 TTATGGTTTA
1 TTATGGTTTA
15961273 AGTGTTGGGG
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
12 3 0.03
13 11 0.11
14 74 0.76
15 7 0.07
17 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:15961284 original size:21 final size:22
Alignment explanation
Indices: 15961260--15961307 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
15961250 TATGGATTAT
* *
15961260 GGTTTATGGTTTAAGTG-TTGG
1 GGTTTAAGGTTTAAGGGTTTGG
*
15961281 GGTTTAAGGTTTAGGGGTTTGG
1 GGTTTAAGGTTTAAGGGTTTGG
15961303 GGTTT
1 GGTTT
15961308 GGGGTTAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.46
Consensus pattern (22 bp):
GGTTTAAGGTTTAAGGGTTTGG
Found at i:15961320 original size:14 final size:14
Alignment explanation
Indices: 15961267--15961321 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
15961257 TATGGTTTAT
15961267 GGTTTAA-GTGTTGG
1 GGTTTAAGGT-TTGG
15961281 GGTTTAAGGTTTAGG
1 GGTTTAAGGTTT-GG
**
15961296 GGTTTGGGGTTTGG
1 GGTTTAAGGTTTGG
*
15961310 GGTTAAAGGTTT
1 GGTTTAAGGTTT
15961322 AAGGGTTATG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 20 0.59
15 14 0.41
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.42
Consensus pattern (14 bp):
GGTTTAAGGTTTGG
Found at i:15962326 original size:115 final size:112
Alignment explanation
Indices: 15962050--15962395 Score: 367
Period size: 115 Copynumber: 3.0 Consensus size: 112
15962040 TAAATATTTA
* * * * * *
15962050 GCAAAAA-TCATTTTGTTTTAATAAAAACGGCGCCATTCTATTGGATTTCTTAGTGACGTTTTTG
1 GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCCATTTTATTGGATTTTTTAGTGGC-TTTTTT
* * *
15962114 GTGAAACACCGCAATATGTGGGCTTTAGCGGTGCTAGTGAAAAAC-AC
65 GTTAAACGCCGCAATATGTGGGCTTTAGCGGTGCTAGTGAAAAACGCC
* * * * * *
15962161 GTAAAAAGTTATTCTGTTTTAATCAAAATGACGCCGTTTTATTTGATTTTTTAGTGGCTTTTTTG
1 GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCCATTTTATTGGATTTTTTAGTGGCTTTTTTG
*
15962226 TTAAAACGCCGCAATAGGTCGGGCTTTAGCGGTGCTAGGTGAAAAACGCC
66 TT-AAACGCCGCAATATGT-GGGCTTTAGCGGTGCTA-GTGAAAAACGCC
* * * *
15962276 GCAAAATGTTATTTTGTTTTAATCAAAACGGCGCCTTTTTGTAGG-TTTTTTAGTGGCATTTTTT
1 GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCCATTTTATTGGATTTTTTAGTGGC-TTTTTT
* * * *
15962340 GGTTAAACGCCACAATATGTAGGGATTTAGCAGCGCTAGTGGATAAAA-GCC
65 -GTTAAACGCCGCAATATGT-GGGCTTTAGCGGTGCTAGT-GA-AAAACGCC
15962391 GCAAA
1 GCAAA
15962396 GGTTGATTTC
Statistics
Matches: 195, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
111 13 0.07
112 54 0.28
113 17 0.09
114 23 0.12
115 81 0.42
116 7 0.04
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (112 bp):
GCAAAAAGTTATTTTGTTTTAATCAAAACGGCGCCATTTTATTGGATTTTTTAGTGGCTTTTTTG
TTAAACGCCGCAATATGTGGGCTTTAGCGGTGCTAGTGAAAAACGCC
Found at i:15964117 original size:16 final size:16
Alignment explanation
Indices: 15964096--15964184 Score: 79
Period size: 16 Copynumber: 5.6 Consensus size: 16
15964086 ACGTTTAGTT
*
15964096 GGCTGTAGTGGAATAG
1 GGCTGTAATGGAATAG
*
15964112 GGCTGTAATTGAATAG
1 GGCTGTAATGGAATAG
* *
15964128 AGCTGTAATTGAATAG
1 GGCTGTAATGGAATAG
* * *
15964144 AGCTATAATGAAATAG
1 GGCTGTAATGGAATAG
* * *
15964160 AGCTATAATGGAAAAG
1 GGCTGTAATGGAATAG
*
15964176 AGCTGTAAT
1 GGCTGTAAT
15964185 AAGTAATTCA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 64 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.27
Consensus pattern (16 bp):
GGCTGTAATGGAATAG
Found at i:15964142 original size:32 final size:33
Alignment explanation
Indices: 15964097--15964184 Score: 108
Period size: 32 Copynumber: 2.7 Consensus size: 33
15964087 CGTTTAGTTG
* *
15964097 GCTGTAGTGGAATAGGGCTGTAATTG-AATAGA
1 GCTGTAATGGAATAGAGCTGTAATTGAAATAGA
* *
15964129 GCTGTAATTGAATAGAGCTATAA-TGAAATAGA
1 GCTGTAATGGAATAGAGCTGTAATTGAAATAGA
* *
15964161 GCTATAATGGAAAAGAGCTGTAAT
1 GCTGTAATGGAATAGAGCTGTAAT
15964185 AAGTAATTCA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
31 2 0.04
32 44 0.96
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (33 bp):
GCTGTAATGGAATAGAGCTGTAATTGAAATAGA
Found at i:15971637 original size:42 final size:43
Alignment explanation
Indices: 15971569--15971799 Score: 267
Period size: 42 Copynumber: 5.4 Consensus size: 43
15971559 AATATTTTTT
* * **
15971569 TAAAGGTCATGTTCTTTAGCGACGTTTGTGAGAAAAGCGCTGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCAC
* *
15971612 TAAAGGTC-TGTTCTATAGTGGCGTTTGTG-GAAAAAGTGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAG-AAAAGCGCCAC
*
15971654 TAAAGGTC-TGTTCTATAGCGGCGTTTGT-ATGAAAAGCGCCAT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-GAAAAGCGCCAC
* * * *
15971696 TAAAGGTCATGTTCTTTAGCGGCGTCTCT-AGAAAAAGTGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAG-AAAAGCGCCAC
** *
15971739 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-AAAAAAGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCAC
15971781 TAAAGGTCATGTTCTATAG
1 TAAAGGTCATGTTCTATAG
15971800 TGGTGTTTTA
Statistics
Matches: 162, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 98 0.60
43 62 0.38
44 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCAC
Found at i:15971737 original size:85 final size:85
Alignment explanation
Indices: 15971569--15971799 Score: 297
Period size: 85 Copynumber: 2.7 Consensus size: 85
15971559 AATATTTTTT
* * ** *
15971569 TAAAGGTCATGTTCTTTAGCGACGTTTGTGAGAAAAGCGCTGCTAAAGGTCTGTTCTATAGTGGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGC
* * *
15971634 GTTTGTGGAAAAAGTGCCAC
66 GTCTCTAGAAAAAGTGCCAC
* *
15971654 TAAAGGTC-TGTTCTATAGCGGCGTTTGT-ATGAAAAGCGCCATTAAAGGTCATGTTCTTTAGCG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-GAAAAGCGCCACTAAAGGTC-TGTTCTATAGCG
15971717 GCGTCTCTAGAAAAAGTGCCAC
64 GCGTCTCTAGAAAAAGTGCCAC
** *
15971739 TAAAGGTCATGTTCTATAGCGGCGTTTGTGA-AAAAAAGCCGCTAAAGGTCATGTTCTATAG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTC-TGTTCTATAG
15971800 TGGTGTTTTA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
83 1 0.01
84 35 0.28
85 70 0.55
86 20 0.16
87 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (85 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGC
GTCTCTAGAAAAAGTGCCAC
Found at i:15972023 original size:12 final size:12
Alignment explanation
Indices: 15972006--15972038 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
15971996 CGGCCCGCCC
15972006 ATATTAATTTTT
1 ATATTAATTTTT
15972018 ATATT-ATTTTT
1 ATATTAATTTTT
15972029 ATA-TAATTTT
1 ATATTAATTTT
15972039 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:15972206 original size:30 final size:30
Alignment explanation
Indices: 15972162--15972221 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15972152 AATTAATAAG
*
15972162 CAAATGTCTCTAAAATAATAA-AAAAGTTAA
1 CAAATATCTCTAAAATAATAACAAAA-TTAA
*
15972192 CAAATATCTTTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
15972222 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:15972273 original size:14 final size:14
Alignment explanation
Indices: 15972254--15972283 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15972244 TATACACTAA
15972254 TAGCAACAAAATAG
1 TAGCAACAAAATAG
*
15972268 TAGCAACATAATAG
1 TAGCAACAAAATAG
15972282 TA
1 TA
15972284 AAATAGTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (14 bp):
TAGCAACAAAATAG
Found at i:15972299 original size:11 final size:11
Alignment explanation
Indices: 15972260--15972300 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
15972250 CTAATAGCAA
15972260 CAAAATAGTAG
1 CAAAATAGTAG
* *
15972271 CAACATAATAG
1 CAAAATAGTAG
*
15972282 TAAAATAGTAG
1 CAAAATAGTAG
15972293 CAAAATAG
1 CAAAATAG
15972301 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:15978010 original size:6 final size:6
Alignment explanation
Indices: 15977999--15978036 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
15977989 AGCCTAAACC
* *
15977999 TTTTGT TTTTGT TTTTGT TGTTG- TTTTGT TGTTGT TTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTT
15978037 GTTATCATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (6 bp):
TTTTGT
Found at i:15978025 original size:11 final size:11
Alignment explanation
Indices: 15977999--15978039 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
15977989 AGCCTAAACC
*
15977999 TTTTGTTTTTG
1 TTTTGTTGTTG
15978010 TTTTTGTTGTTG
1 -TTTTGTTGTTG
15978022 TTTTGTTGTTG
1 TTTTGTTGTTG
15978033 TTTTGTT
1 TTTTGTT
15978040 ATCATTTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (11 bp):
TTTTGTTGTTG
Found at i:15979103 original size:26 final size:26
Alignment explanation
Indices: 15979073--15979124 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15979063 CAATAATAAA
*
15979073 TCTTCTATAATCAGGTTTATCTCCAC
1 TCTTCCATAATCAGGTTTATCTCCAC
15979099 TCTTCCATAATCAGGTTTATCTCCAC
1 TCTTCCATAATCAGGTTTATCTCCAC
15979125 CTCTCTTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.29, G:0.08, T:0.40
Consensus pattern (26 bp):
TCTTCCATAATCAGGTTTATCTCCAC
Found at i:15987430 original size:89 final size:89
Alignment explanation
Indices: 15987297--15987584 Score: 413
Period size: 89 Copynumber: 3.3 Consensus size: 89
15987287 CTGCAACTAC
* * * * *
15987297 TCCACTGCAACTTCAGAGAGATAAGA-CTTGCAAAT-TACAGCCTGTTACCCTACCACTTAAGGG
1 TCCACTGCAACTTCAGGGAGACAAGATC-TGC-AATCTTCAGCCTGTTACCCTACTACTTAGGGG
*
15987360 GTTAAGGCTTGCTTTCTTTGATTTGT
64 GTTAAGGCTTGCTTTCTTTGATCTGT
15987386 TCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGT
1 TCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGT
*
15987451 TAAGGCTTACTTTCTTTGATCTGT
66 TAAGGCTTGCTTTCTTTGATCTGT
* * *
15987475 TCCACTGCAACTTCAAGGAGACAAGATCCGCAATCTTCAGCTTGTTA-CCTACTACTTAGGGGGT
1 TCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGT
* *
15987539 TAAGGCTTGC-TTCTTCGATCTGC
66 TAAGGCTTGCTTTCTTTGATCTGT
*
15987562 TCCACTGCAACTTTAGGGAGACA
1 TCCACTGCAACTTCAGGGAGACA
15987585 TGGTTCGTGT
Statistics
Matches: 182, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
87 32 0.18
88 29 0.16
89 120 0.66
90 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (89 bp):
TCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGGT
TAAGGCTTGCTTTCTTTGATCTGT
Found at i:16002689 original size:38 final size:38
Alignment explanation
Indices: 16002638--16002713 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
16002628 AGGAGCCCAA
16002638 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
1 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
16002676 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
1 CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
16002714 TACTTTGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (38 bp):
CAAGCAAGTGCCATCAGTGTCTCAAAGGAAACGATCTT
Found at i:16005168 original size:3 final size:3
Alignment explanation
Indices: 16005160--16005187 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
16005150 AACAAATCCA
16005160 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
16005188 GACAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16007998 original size:16 final size:16
Alignment explanation
Indices: 16007965--16007994 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16007955 CATGTGTCTT
16007965 TTTTTTAAATTATTTA
1 TTTTTTAAATTATTTA
16007981 TTTTTTAAA-TATTT
1 TTTTTTAAATTATTT
16007995 TATTATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTTAAATTATTTA
Found at i:16009880 original size:21 final size:20
Alignment explanation
Indices: 16009847--16009891 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
16009837 TATATATATA
*
16009847 TTTTTATATTTTTAAGTTTTT
1 TTTTTATATTTTTAA-TTTAT
16009868 TTTTTA-ATTTTTTAATTTAT
1 TTTTTATA-TTTTTAATTTAT
16009888 TTTT
1 TTTT
16009892 ATCACATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTATATTTTTAATTTAT
Found at i:16012961 original size:36 final size:36
Alignment explanation
Indices: 16012912--16013203 Score: 133
Period size: 36 Copynumber: 8.4 Consensus size: 36
16012902 TAACTCTCAC
* * * *
16012912 AACAATTATTTATTCAGTAATAGTCAGTTATTCGGT
1 AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
* * * *
16012948 AACAATCAATTATTTAATAATAACCAGTTATTTAGT
1 AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
* * * *
16012984 ATCGATC-A--ATT--G-----ATCGGTTATCCAGT
1 AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
* *
16013010 AACAGTCAATTATTCAGTAA-AATCAGATATTCAGT
1 AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
* ** *
16013045 AACAATTAAGTTATTCAGTAGCAGTCA-TTCATTCAGT
1 AACAATCAA-TTATTCAGTAATAATCAGTT-ATTCAGT
* * * *
16013082 GACAATCAGTTATTCAGTAATGATCAATTATTCAGT
1 AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
* * * * * * *
16013118 AATATTCAGTTATTCAGTAACAGTCTA-ATATCCAGT
1 AACAATCAATTATTCAGTAATAATC-AGTTATTCAGT
* * * * * *
16013154 AACAGTCAATTATCCGGTAACAGTCAATTATTCAGT
1 AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
* *
16013190 AATAATCAGTTATT
1 AACAATCAATTATT
16013204 TTATACCTTT
Statistics
Matches: 189, Mismatches: 52, Indels: 30
0.70 0.19 0.11
Matches are distributed among these distances:
26 14 0.07
27 1 0.01
29 3 0.02
31 1 0.01
33 3 0.02
35 20 0.11
36 127 0.67
37 20 0.11
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (36 bp):
AACAATCAATTATTCAGTAATAATCAGTTATTCAGT
Found at i:16013027 original size:18 final size:18
Alignment explanation
Indices: 16013001--16013191 Score: 167
Period size: 18 Copynumber: 10.6 Consensus size: 18
16012991 AATTGATCGG
*
16013001 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
16013019 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* *
16013037 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAGTCAA
*
16013054 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
16013072 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAA
*
16013091 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
16013109 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
16013127 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
16013146 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
16013163 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
16013181 TTATTCAGTAA
1 TTATTCAGTAA
16013192 TAATCAGTTA
Statistics
Matches: 139, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
17 19 0.14
18 105 0.76
19 15 0.11
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:16013136 original size:72 final size:71
Alignment explanation
Indices: 16013002--16013203 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 71
16012992 ATTGATCGGT
* * * *
16013002 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACAATTAAGTTATTCAGTAG
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAA
*
16013066 CAGTC-AT
64 CAGTCTAA
* * * *
16013073 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAGTAA
16013138 CAGTCTAA
64 CAGTCTAA
* * * * *
16013146 TATCCAGTAACAGTCAATTATCCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATT
16013204 TTATACCTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.01
72 91 0.84
73 16 0.15
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (71 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCTAA
Found at i:16015654 original size:47 final size:47
Alignment explanation
Indices: 16015585--16015687 Score: 170
Period size: 47 Copynumber: 2.2 Consensus size: 47
16015575 GCGTTACAGT
* * * *
16015585 AACAGTAGCAGTACGGTACACAGAGTACCTCATCGGAACAAATCTGG
1 AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
16015632 AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
16015679 AACAGTAAC
1 AACAGTAAC
16015688 GGTAACAGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.41, C:0.24, G:0.19, T:0.16
Consensus pattern (47 bp):
AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:16015741 original size:12 final size:12
Alignment explanation
Indices: 16015724--16015748 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16015714 AGTGCCGAAT
16015724 CGGTAACAGTAA
1 CGGTAACAGTAA
16015736 CGGTAACAGTAA
1 CGGTAACAGTAA
16015748 C
1 C
16015749 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:16017312 original size:20 final size:18
Alignment explanation
Indices: 16017278--16017322 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
16017268 AAACTTTGAA
16017278 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
16017296 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
16017316 -TTTCCCT
1 TTTTCCCT
16017323 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:16017855 original size:29 final size:31
Alignment explanation
Indices: 16017822--16017880 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
16017812 ATTTATCATA
* *
16017822 TAATA-TTAATTTAATAATAA-TAAATACAC
1 TAATATTTAATTAAATAATAAGAAAATACAC
*
16017851 TAATATTTACTTAAATAATAAGAAAATACA
1 TAATATTTAATTAAATAATAAGAAAATACA
16017881 TACATGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
30 13 0.52
31 7 0.28
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (31 bp):
TAATATTTAATTAAATAATAAGAAAATACAC
Found at i:16018267 original size:29 final size:29
Alignment explanation
Indices: 16018225--16018282 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
16018215 ATACCTTAAG
*
16018225 TGGATGTATTTAGGATTAGGGTAAACTTA
1 TGGATATATTTAGGATTAGGGTAAACTTA
*
16018254 TGGATATATTTAGGATTAGGGTGAACTTA
1 TGGATATATTTAGGATTAGGGTAAACTTA
16018283 CTCATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (29 bp):
TGGATATATTTAGGATTAGGGTAAACTTA
Found at i:16018289 original size:29 final size:29
Alignment explanation
Indices: 16018231--16018290 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
16018221 TAAGTGGATG
*
16018231 TATTTAGGATTAGGGTAAACTTATGGATA
1 TATTTAGGATTAGGGTAAACTTATGCATA
*
16018260 TATTTAGGATTAGGGTGAACTTACT-CATA
1 TATTTAGGATTAGGGTAAACTTA-TGCATA
16018289 TA
1 TA
16018291 ATTATTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 27 0.96
30 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (29 bp):
TATTTAGGATTAGGGTAAACTTATGCATA
Found at i:16018395 original size:20 final size:21
Alignment explanation
Indices: 16018361--16018414 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
16018351 AATTATAAAT
*
16018361 AAATGAATA-TTTATTTTTTTA
1 AAAT-AATATTTTATTTTATTA
*
16018382 ACATAA-ATTTTA-TTTATTA
1 AAATAATATTTTATTTTATTA
16018401 AAATAATATTTTAT
1 AAATAATATTTTAT
16018415 AAATAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 12 0.44
20 12 0.44
21 3 0.11
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
AAATAATATTTTATTTTATTA
Found at i:16021693 original size:48 final size:49
Alignment explanation
Indices: 16021639--16021956 Score: 296
Period size: 48 Copynumber: 6.6 Consensus size: 49
16021629 GTGAATTGTA
* * * *
16021639 GATGCCATGTTCCAAACATGGTCTTACACTAGCT-TACGTGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
* * * * ** **
16021687 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-CGTCTTAATACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
* * *
16021735 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCT-CATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATCGAGGCC
* * * *
16021783 GATGTCATGTCCCAGACATGGTCTTACACTAGCGC-ACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
* *
16021831 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATC-A--CC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-AC-ATATCGAGGCC
* * * * *
16021879 GATGCCATGTTCCAAACATGGTCTTACACTAACTCT-TATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATCGAGGCC
16021927 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
16021957 GGCACACATA
Statistics
Matches: 224, Mismatches: 35, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.00
46 2 0.01
47 2 0.01
48 210 0.94
49 2 0.01
50 3 0.01
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGGCC
Found at i:16021803 original size:96 final size:94
Alignment explanation
Indices: 16021683--16021959 Score: 349
Period size: 96 Copynumber: 2.9 Consensus size: 94
16021673 TACGTGTCGA
*
16021683 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCGTCTTAATACCGATGCCATGTCCC
1 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC-T-TTAATGCCGATGCCATGTCCC
* * **
16021748 AGACATGGTCTTACAATGGCTCTCATAATGT
64 AGACATGGTCTTACACTGGCTCTCACAACAT
* * * * * *
16021779 GGCCGATGTCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCC
1 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC-T-TTAATGCCGATGCCATGTCCC
16021844 AGACATGGTCTTACACTGGCTCTCACAACAT
64 AGACATGGTCTTACACTGGCTCTCACAACAT
** * *
16021875 CACCGATGCCATGTTCCAAACATGGTCTTACACTAACTCT-TATAATGTGGCCGATGCCATGTCC
1 GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCTTTAA--T-GCCGATGCCATGTCC
16021939 CAGACATGGTCTTACACTGGC
63 CAGACATGGTCTTACACTGGC
16021960 ACACATATCA
Statistics
Matches: 155, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
93 2 0.01
94 1 0.01
95 1 0.01
96 151 0.97
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
GGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCTTTAATGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCACAACAT
Found at i:16021904 original size:144 final size:144
Alignment explanation
Indices: 16021639--16021969 Score: 432
Period size: 144 Copynumber: 2.3 Consensus size: 144
16021629 GTGAATTGTA
* * ** * * * *
16021639 GATGCCATGTTCCAAACATGGTCTTACACTAGCTTACGTGTCGAGGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAAC
* * * **
16021704 ATGGTCTTACACTAGCTCTCGTCTTAATACCGATGCCATGTCCCAGACATGGTCTTACAATGGCT
66 ATGGTCTTACACTAGCTCTCGACTAAATACCGATGCCATGTCCCAAACATGGTCTTACAATAACT
16021769 CTCATAATGTGGCC
131 CTCATAATGTGGCC
* * * *
16021783 GATGTCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAAC
* * *
16021848 ATGGTCTTACACTGGCTCTC-AC-AACATCACCGATGCCATGTTCCAAACATGGTCTTACACTAA
66 ATGGTCTTACACTAGCTCTCGACTAA-AT-ACCGATGCCATGTCCCAAACATGGTCTTACAATAA
*
16021911 CTCTTATAATGTGGCC
129 CTCTCATAATGTGGCC
*
16021927 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
16021970 CCCAAATGTC
Statistics
Matches: 162, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
142 1 0.01
143 3 0.02
144 158 0.98
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCTCTCGACTAAATACCGATGCCATGTCCCAAACATGGTCTTACAATAACT
CTCATAATGTGGCC
Found at i:16027182 original size:24 final size:24
Alignment explanation
Indices: 16027150--16027197 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
16027140 AGAAGAAAGA
16027150 AACAAAATTCATTTTTGTAATCTG
1 AACAAAATTCATTTTTGTAATCTG
16027174 AACAAAATTCATTTTTGTAATCTG
1 AACAAAATTCATTTTTGTAATCTG
16027198 CTTTCGGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (24 bp):
AACAAAATTCATTTTTGTAATCTG
Found at i:16028180 original size:18 final size:17
Alignment explanation
Indices: 16028159--16028351 Score: 98
Period size: 17 Copynumber: 11.3 Consensus size: 17
16028149 AATTTTAATT
*
16028159 TTATTATTATTACTATTA
1 TTATTA-TATTATTATTA
16028177 TTATTACTATTACTT-TTA
1 TTATTA-TATTA-TTATTA
* *
16028195 TAATT-TATTATTGTTA
1 TTATTATATTATTATTA
*
16028211 TTGTTACTATT-TCTATTA
1 TTATTA-TATTAT-TATTA
* * *
16028229 TTGTTTTTTTATTATT-
1 TTATTATATTATTATTA
* * *
16028245 TATATTATTGTTGTTGTTA
1 T-TATTA-TATTATTATTA
* *
16028264 TCATTAT-TTCTTATT-
1 TTATTATATTATTATTA
16028279 TTATTATTATT-TTATTA
1 TTATTA-TATTATTATTA
*
16028296 -TATTTATTTTATTATTA
1 TTA-TTATATTATTATTA
* *
16028313 TTAGTATATTATTATTC
1 TTATTATATTATTATTA
16028330 TTATTA-ATGTATTATTA
1 TTATTATAT-TATTATTA
16028347 TTATT
1 TTATT
16028352 TTCTACTTTA
Statistics
Matches: 136, Mismatches: 23, Indels: 33
0.71 0.12 0.17
Matches are distributed among these distances:
15 7 0.05
16 31 0.23
17 51 0.38
18 45 0.33
19 2 0.01
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (17 bp):
TTATTATATTATTATTA
Found at i:16028302 original size:14 final size:13
Alignment explanation
Indices: 16028274--16028350 Score: 56
Period size: 14 Copynumber: 5.9 Consensus size: 13
16028264 TCATTATTTC
16028274 TTATTTTA-T-TA
1 TTATTTTATTATA
16028285 TTATTTTATTATA
1 TTATTTTATTATA
16028298 TTTATTTTATTATTA
1 -TTATTTTATTA-TA
* *
16028313 TTAGTATA-T-TA
1 TTATTTTATTATA
16028324 TTATTCTTATTA-A
1 TTATT-TTATTATA
16028337 TGTATTATTATTAT
1 T-TATT-TTATTAT
16028351 TTTCTACTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
11 14 0.27
12 3 0.06
13 6 0.12
14 27 0.52
15 2 0.04
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTTTATTATA
Found at i:16028368 original size:3 final size:3
Alignment explanation
Indices: 16028159--16028351 Score: 116
Period size: 3 Copynumber: 64.7 Consensus size: 3
16028149 AATTTTAATT
* * *
16028159 TTA TTA TTA TTA CTA TTA TTA TTA CTA TTA CTT- TTA TAA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA TTA
* * * * *
16028205 TTG TTA TTG TTA CTA TT- TCTA TTA TTG TT- TTT TTA TTA TT- TATA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
16028249 TTA TTG TTG TTG TTA TCA TTA TTTC TTA TT- TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* *
16028293 TTA -TA TTTA TT- TTA TTA TTA TTA GTA -TA TTA TTA TTC TTA TTAA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
16028337 TGTA TTA TTA TTA TT
1 T-TA TTA TTA TTA TT
16028352 TTCTACTTTA
Statistics
Matches: 150, Mismatches: 23, Indels: 34
0.72 0.11 0.16
Matches are distributed among these distances:
2 16 0.11
3 119 0.79
4 14 0.09
5 1 0.01
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:16028473 original size:17 final size:16
Alignment explanation
Indices: 16028451--16028487 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
16028441 TATTATTACC
16028451 TATTACCCTTTTATTAT
1 TATTACCCTTTTATT-T
*
16028468 TATTACCTTTTTATTT
1 TATTACCCTTTTATTT
16028484 TATT
1 TATT
16028488 TTACTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTACCCTTTTATTT
Found at i:16031062 original size:46 final size:46
Alignment explanation
Indices: 16030972--16031120 Score: 174
Period size: 46 Copynumber: 3.2 Consensus size: 46
16030962 AGATCAAATT
** * *
16030972 GATTGAAGAAGCCACAAAATCCTATACTCCTGAGTTGCAGTGGGATG
1 GATTGAAGAAGATAC-AAATCCTATACCCCTAAGTTGCAGTGGGATG
* * * *
16031019 GATTGAAGAAGGTACAAATCCTTTACCCCTAAATTGCAATGGGA-G
1 GATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGGATG
* *
16031064 GAATTGAAGAAGATACGAATCCTATACCCCTAAGTTACAGTGGGATG
1 G-ATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGGATG
*
16031111 GATGGAAGAA
1 GATTGAAGAA
16031121 ACCAAATTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
45 2 0.02
46 69 0.80
47 15 0.17
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (46 bp):
GATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGGATG
Found at i:16031638 original size:45 final size:45
Alignment explanation
Indices: 16031515--16032187 Score: 271
Period size: 44 Copynumber: 14.6 Consensus size: 45
16031505 TCATCATGGC
* * * *
16031515 GAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTGAAGCCA--
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* **
16031558 CAAGTCTTATCTCCCTGAAGTTGCAGCAGAGTAGATTAAAGACAGT
1 GAA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* * * *
16031604 GAATCTTATTTCCCTGAAGTTGCAATGGAATAGATTAAAGCTACAAACTAT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG--AC--A--GT
* * * *
16031655 GGCCAATCTTATCTCCTTGTAGTTGCAGTGGAGTAGATTGAAGCCA-T
1 -G--AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* * * * * * * * *
16031702 TAACCTTCTCTCCCTGAAGTTGTAGTGGAGCAGGTTGAATATAG-
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
** * * * *
16031746 G--TCTTATCTCCCTGAAGTTGCAACGGAGCAGACTAAAGATAGC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* ** *
16031789 GAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAACTACAAACCATGGT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT---A--A-AGA-CA--GT
* * * * * **
16031843 GAATCTTATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCCTCT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* * * * * *
16031888 -AACCTTATTTCCCTAAAGTTGCAGTGGAATAGGTT-GA-ACA-T
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* * * *
16031929 -AGATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATCAAAGATAGC
1 GA-ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* ** * *
16031974 GAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAACCAT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG--AC--A--GT
* * * *
16032025 GGCAAATCTTATCTCCCTCAAGTTGCAGTGGAGTAGATTGAAGCCACT
1 -G--AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* * * * * * *
16032073 -AACCTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAATATA--
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
*** * ** *
16032115 G-ATCTTATCTTTTTGAAGTTGCAATGGAGTAGATCGAAGATAGT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
* * *
16032159 AAATCTTATTTCCCT-AGCGTTGCAGTGGA
1 GAATCTTATCTCCCTGA-AGTTGCAGTGGA
16032188 ACAGATTGAA
Statistics
Matches: 467, Mismatches: 119, Indels: 86
0.69 0.18 0.13
Matches are distributed among these distances:
41 2 0.00
42 91 0.19
43 5 0.01
44 133 0.28
45 111 0.24
46 3 0.01
47 5 0.01
48 3 0.01
49 3 0.01
50 3 0.01
51 3 0.01
52 5 0.01
54 100 0.21
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (45 bp):
GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGACAGT
Found at i:16031795 original size:185 final size:185
Alignment explanation
Indices: 16031519--16032199 Score: 857
Period size: 185 Copynumber: 3.7 Consensus size: 185
16031509 CATGGCGAAT
* * * *
16031519 CTTATCTCCCTGAAGTTGTAGTAGAGTAGATTGAAGCCACA-AGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAA--CATAGA-TCTTATCTCCCTGAAGTTGCA
* * * * * * *
16031583 GCAGAGTAGATTAAAGACAGTGAATCTTATTTCCCTGAAGTTGCAATGGAATAGATTAAAGCTAC
63 ACGGAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAC
* * * *
16031648 AAACTATGGCCAATCTTATCTCCTTGTAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
128 AAACCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
* * * * *
16031706 CTTCTCTCCCTGAAGTTGTAGTGGAGCAGGTTGAATATAGGTCTTATCTCCCTGAAGTTGCAACG
1 CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
* * *
16031771 GAGCAGA-CTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAAAGATTAAAACTACAA
66 GAGTAGATC-AAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
** * * *
16031835 ACCATGGTGAATCTTATCTCCCTGAAGTTACAATGGAGCAGATTGAAGCC-TCTAAC
130 ACCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCAT-TAAC
* * * * **
16031891 CTTATTTCCCTAAAGTTGCAGTGGAATAGGTTGAACATAGATCTTATCTCCCTGAAGTTGTAGTG
1 CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
*
16031956 GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAA
66 GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAA
* *
16032021 CCATGGCAAATCTTATCTCCCTCAAGTTGCAGTGGAGTAGATTGAAGCCACTAAC
131 CCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
* *** *
16032076 CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAATATAGATCTTATCTTTTTGAAGTTGCAATG
1 CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
* ** * *
16032141 GAGTAGATCGAAGATAGTAAATCTTATTTCCCT-AGCGTTGCAGTGGAACAGATTGAAGC
66 GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGA-AGTTGCAGTGGAACAGATTAAAGC
16032200 CACCATCCTT
Statistics
Matches: 429, Mismatches: 59, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
184 2 0.00
185 395 0.92
186 1 0.00
187 31 0.07
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (185 bp):
CTTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAACATAGATCTTATCTCCCTGAAGTTGCAACG
GAGTAGATCAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAA
CCATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCATTAAC
Found at i:16031816 original size:87 final size:86
Alignment explanation
Indices: 16031712--16032197 Score: 269
Period size: 87 Copynumber: 5.3 Consensus size: 86
16031702 TAACCTTCTC
* * * *
16031712 TCCCTGAAGTTGTAGTGGAGCAGGTTGAATATAGGTCTTATCTCCCTGAAGTTGCAACGGAGCAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
16031777 ACTAAAGATAGCGAATCTTATT
66 A-TAAAGATAGCGAATCTTATT
* * *
16031799 TCCCTGAAGTTGCAGTGGAAAAGATTAAAACTACAAACCATGGTGAATCTTATCTCCCTGAAGTT
1 TCCCTGAAGTTGCAGTGGAACAGATT-GAA-T-------ATAG-G--TCTTATCTCCCTGAAGTT
* * * * *
16031864 ACAATGGAGCAGATTGAAGCCT--CTAACCTTATT
54 GCAATGGAGCAGA-TAAAG-ATAGCGAATCTTATT
* * * * * * * *
16031897 TCCCTAAAGTTGCAGTGGAATAGGTTGAACATAGATCTTATCTCCCTGAAGTTGTAGTGGAGTAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
16031962 ATCAAAGATAGCGAATCTTATT
66 AT-AAAGATAGCGAATCTTATT
* *
16031984 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTACAAACCATGGCAAATCTTATCTCCCTCAAGTT
1 TCCCTGAAGTTGCAGTGGAACAGATTGAA--T----A-TA-GG----TCTTATCTCCCTGAAGTT
* * * ** * * *
16032049 GCAGTGGAGTAGATTGAAGCCA-CTAACCTTATC
54 GCAATGGAGCAGA-TAAAGATAGCGAATCTTATT
* * ** * * *** *
16032082 TCCCTAAAGTTGTAGTGGAGTAGGTTGAATATAGATCTTATCTTTTTGAAGTTGCAATGGAGTAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
* **
16032147 ATCGAAGATAGTAAATCTTATT
66 AT-AAAGATAGCGAATCTTATT
*
16032169 TCCCT-AGCGTTGCAGTGGAACAGATTGAA
1 TCCCTGA-AGTTGCAGTGGAACAGATTGAA
16032198 GCCACCATCC
Statistics
Matches: 302, Mismatches: 65, Indels: 64
0.70 0.15 0.15
Matches are distributed among these distances:
85 3 0.01
86 62 0.21
87 86 0.28
88 2 0.01
89 4 0.01
90 1 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 1 0.00
95 1 0.00
96 4 0.01
97 3 0.01
98 64 0.21
99 66 0.22
100 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (86 bp):
TCCCTGAAGTTGCAGTGGAACAGATTGAATATAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAG
ATAAAGATAGCGAATCTTATT
Found at i:16033859 original size:3 final size:3
Alignment explanation
Indices: 16033555--16033842 Score: 161
Period size: 3 Copynumber: 96.0 Consensus size: 3
16033545 CCTTTCTTAA
* ** *
16033555 ATT ATT ATT -CT ATT -TT ATT ATT AAA ATT AATT AATT -TT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT -ATT ATT ATT ATT
* *
16033599 ATT ATT AATT -TT ATT ATT ATT ACT ATTT ATT ATT ATT ACT ATT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
* * * * *
16033645 ATT ACT ATT ACTT -TT ATA ATTT ATT ATT GTT ATT GTT ACT ATT -TCT
1 ATT ATT ATT A-TT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT AT-T
* * * * *
16033691 ATT ATT GTT -TT ATT ATT ATT ATT -TAT ATT ATT GTT GTT GTT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT
*
16033735 ATT ATT CCTT ATT -TT ATT ATT ATT -TT ATT A-T ATTT ATT -TT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * * * *
16033778 ATT ATT TTCT ATT ATT GTT AAT ATT AGT A-T ATT ATT ATT ATG CTT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
16033823 ATT AATGT ATT ATT ATT ATT
1 ATT -AT-T ATT ATT ATT ATT
16033843 TTCTACTTTA
Statistics
Matches: 220, Mismatches: 40, Indels: 50
0.71 0.13 0.16
Matches are distributed among these distances:
2 23 0.10
3 168 0.76
4 28 0.13
5 1 0.00
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:16034540 original size:23 final size:22
Alignment explanation
Indices: 16034498--16034540 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
16034488 CCGAATATCC
*
16034498 TTTTAAAATCAAGATGCAAGAG
1 TTTTAAAATCAAGAAGCAAGAG
16034520 TTTTAAAGATCAA-AAGACAAG
1 TTTTAAA-ATCAAGAAG-CAAG
16034541 CTTATTCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.26
Consensus pattern (22 bp):
TTTTAAAATCAAGAAGCAAGAG
Found at i:16036175 original size:27 final size:27
Alignment explanation
Indices: 16036145--16036202 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
16036135 ATACTTTAGT
*
16036145 TTACTAAAATACCCTTAG-TTTGTAAAA
1 TTACTAAAATA-CCTTAGACTTGTAAAA
* *
16036172 TTACTGAAATACCTTTGACTTGTAAAA
1 TTACTAAAATACCTTAGACTTGTAAAA
16036199 TTAC
1 TTAC
16036203 CAAAGCACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (27 bp):
TTACTAAAATACCTTAGACTTGTAAAA
Found at i:16036308 original size:27 final size:26
Alignment explanation
Indices: 16036245--16036318 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
16036235 CACCCCCGGT
* *
16036245 TTATAAAATTACCGAAATACCGTCGA
1 TTATAAAATTACCGAAATACCCTCAA
* *
16036271 TTATAAAATTACTGAAATGCCCTCAA
1 TTATAAAATTACCGAAATACCCTCAA
*
16036297 TTTGTAAAATTACC-AAAGTACC
1 -TTATAAAATTACCGAAA-TACC
16036319 TTCGATTTAC
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (26 bp):
TTATAAAATTACCGAAATACCCTCAA
Found at i:16036326 original size:27 final size:26
Alignment explanation
Indices: 16036167--16036589 Score: 179
Period size: 27 Copynumber: 15.7 Consensus size: 26
16036157 CCTTAGTTTG
* * * * *
16036167 TAAAATTACTGAAATACCTTTGACTTG
1 TAAAATTAC-CAAATACCCTCGATTTA
* * *
16036194 TAAAATTACCAAAGCACCCCCGGTTTA
1 TAAAATTACCAAA-TACCCTCGATTTA
* * *
16036221 TAAAATTACCAAAGCACCCCCGGTTTA
1 TAAAATTACCAAA-TACCCTCGATTTA
*
16036248 TAAAATTACCGAAATACCGTCGA-TTA
1 TAAAATTACC-AAATACCCTCGATTTA
* * * *
16036274 TAAAATTACTGAAATGCCCTCAATTTG
1 TAAAATTAC-CAAATACCCTCGATTTA
*
16036301 TAAAATTACCAAAGTACCTTCGATTTA
1 TAAAATTACCAAA-TACCCTCGATTTA
* * ***
16036328 CAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACC-AAATACCCTCGATTTA
* * **
16036355 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCA-AATACCCTCGATTTA
* ** *
16036382 TAGAATTACCATTTTACCTTCGATTTA
1 TAAAATTACCA-AATACCCTCGATTTA
* ***
16036409 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACC-AAATACCCTCGATTTA
* **** *
16036436 CAAAATTATCGTTTTACCCTTGATTTA
1 TAAAATTA-CCAAATACCCTCGATTTA
* *
16036463 AAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACC-AAATACCCTC-GATTTA
* * *
16036490 TAAAATTACTAAAATACCC-CTGGTTTG
1 TAAAATTAC-CAAATACCCTC-GATTTA
*
16036517 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACC-AAATACCCTC-GATTTA
* * * * *
16036544 TGAAATTATCGAAATACTCTCAATTTG
1 TAAAATTA-CCAAATACCCTCGATTTA
*
16036571 TAAAATTATCGAAATACCC
1 TAAAATTA-CCAAATACCC
16036590 CTGTAGGGTA
Statistics
Matches: 326, Mismatches: 55, Indels: 30
0.79 0.13 0.07
Matches are distributed among these distances:
26 28 0.09
27 292 0.90
28 6 0.02
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (26 bp):
TAAAATTACCAAATACCCTCGATTTA
Found at i:16036362 original size:54 final size:54
Alignment explanation
Indices: 16036304--16036481 Score: 203
Period size: 54 Copynumber: 3.3 Consensus size: 54
16036294 CAATTTGTAA
* * *
16036304 AATTACCAAAGTACCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAAAG
** * * * *
16036358 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCTTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAAAG
*** * * * *
16036412 AATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTTGATTTAAAA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAAAG
*
16036466 AATTACCAAAATACCC
1 AATTACCAAATTACCC
16036482 CTGATTTGTA
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAAAG
Found at i:16036488 original size:81 final size:81
Alignment explanation
Indices: 16036302--16036480 Score: 259
Period size: 81 Copynumber: 2.2 Consensus size: 81
16036292 CTCAATTTGT
* * *
16036302 AAAATTACCAAAGTACCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCAT
1 AAAATTACCAAAATACCTTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAT
*
16036367 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAA
* *** * *
16036383 AGAATTACCATTTTACCTTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGT
1 AAAATTACCAAAATACCTTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAT
*
16036448 TTTACCCTTGATTTAA
66 TTTACCCTCGATTTAA
16036464 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
16036481 CCTGATTTGT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.37
Consensus pattern (81 bp):
AAAATTACCAAAATACCTTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAT
TTTACCCTCGATTTAA
Found at i:16036605 original size:54 final size:51
Alignment explanation
Indices: 16036513--16036724 Score: 139
Period size: 54 Copynumber: 4.0 Consensus size: 51
16036503 ATACCCCTGG
* **
16036513 TTTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTATCGAAATACTCTCAA
1 TTTGTAAAATTA-CGAAATACCCCTGTA-GGGTAG-AATTATCGAAATAC-C-CAA
*
16036567 TTTGTAAAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCAA
1 TTTGTAAAATTA-CGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCAA
* * * *
16036618 TGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTATTGAAATACCC--
1 T-T--TGTAAAATTAC-GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCAA
* * *
16036671 TTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATA-CTGAAATACCC
1 TT-T---GTAAAATTAC-GAAATACCCCTGTAGGGTAGAATTATC-GAAATACCC
16036725 CCGTAGGGTA
Statistics
Matches: 134, Mismatches: 13, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
51 5 0.04
52 3 0.02
53 2 0.01
54 120 0.90
55 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (51 bp):
TTTGTAAAATTACGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCAA
Found at i:16036769 original size:27 final size:27
Alignment explanation
Indices: 16036574--16036769 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
16036564 CAATTTGTAA
* *
16036574 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
16036601 AATTACCGAAATACCAATGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
16036628 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
16036655 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
16036682 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * **
16036709 AAATACTGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
16036736 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
16036763 AATTACC
1 AATTACC
16036770 ATTTTGCCCC
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:16037048 original size:24 final size:25
Alignment explanation
Indices: 16036972--16037041 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
16036962 AGGAAGTGCT
* * * * *
16036972 AAAAGGGCTATGCTCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
16036997 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
16037022 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
16037042 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:16037054 original size:24 final size:24
Alignment explanation
Indices: 16036997--16037068 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
16036987 TAGTTTACCG
16036997 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
16037021 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
16037045 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
16037069 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:16037297 original size:30 final size:30
Alignment explanation
Indices: 16037263--16037345 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
16037253 CGCTTATAGT
16037263 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
*
16037293 AAAGGCTTCGACCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
*
16037324 AAAGGTTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
16037346 TCGAGACTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
30 17 0.35
31 29 0.60
32 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:16039285 original size:17 final size:18
Alignment explanation
Indices: 16039253--16039286 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16039243 TACATAATTA
*
16039253 TTTTCAATAATAATAAAT
1 TTTTCAAAAATAATAAAT
16039271 TTTTCAAAAAT-ATAAA
1 TTTTCAAAAATAATAAA
16039287 AATTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (18 bp):
TTTTCAAAAATAATAAAT
Found at i:16040094 original size:30 final size:31
Alignment explanation
Indices: 16040058--16040117 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
16040048 TAATATAAAA
*
16040058 TTAATATTAAT-T-ATTTTATTTTATTTAATG
1 TTAATATTAATATAATTATA-TTTATTTAATG
16040088 TTAATATTAATATAATTATATTTATTTAAT
1 TTAATATTAATATAATTATATTTATTTAAT
16040118 AATAATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.41
31 11 0.41
32 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (31 bp):
TTAATATTAATATAATTATATTTATTTAATG
Found at i:16040133 original size:66 final size:65
Alignment explanation
Indices: 16040003--16040147 Score: 152
Period size: 66 Copynumber: 2.2 Consensus size: 65
16039993 ACGATTGGAG
* *
16040003 ATTTTTATTTTATTTAATACCATTATAATTATAATTATTTAATATTAATATAAAATTAATATTAA
1 ATTTTTATTTTATTTAATACCAATATAATTATAATTATTTAATATTAATATAAAATTAAAATTAA
* *** * *
16040068 TTATTTTATTTTATTTAATGTTAATATTAA-TATAATTATATTTAT-TTAATA-ATAATATAAAA
1 AT-TTTTATTTTATTTAATACCAATA-TAATTATAATTAT-TTAATATTAATATAAAAT-TAAAA
16040130 TTAA
62 TTAA
16040134 ATTTTTATTATTAT
1 ATTTTTATT-TTAT
16040148 AATTTTTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
65 12 0.18
66 47 0.71
67 7 0.11
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (65 bp):
ATTTTTATTTTATTTAATACCAATATAATTATAATTATTTAATATTAATATAAAATTAAAATTAA
Found at i:16040199 original size:24 final size:23
Alignment explanation
Indices: 16040130--16040200 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 23
16040120 TAATATAAAA
*
16040130 TTAAATTTTTATTATTATAATTT
1 TTAAATTTTTATTATTATTATTT
*
16040153 TTAAATATTTATT-TATATGTATTT
1 TTAAATTTTTATTAT-TAT-TATTT
*
16040177 TTAATTTTTTATATATTATTATTT
1 TTAAATTTTTAT-TATTATTATTT
16040201 CTTATCAACA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 1 0.03
23 15 0.38
24 19 0.47
25 4 0.10
26 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (23 bp):
TTAAATTTTTATTATTATTATTT
Found at i:16042945 original size:14 final size:14
Alignment explanation
Indices: 16042926--16042966 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
16042916 ACCCCGTCCC
16042926 ATATTAATTTTTTT
1 ATATTAATTTTTTT
*
16042940 ATATT-A-TTTATT
1 ATATTAATTTTTTT
*
16042952 ATATAAATTTTTTT
1 ATATTAATTTTTTT
16042966 A
1 A
16042967 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
12 9 0.41
13 2 0.09
14 11 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATATTAATTTTTTT
Found at i:16043859 original size:30 final size:30
Alignment explanation
Indices: 16043779--16043836 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
16043769 TAGAGAGAAT
16043779 TAAAATAAAATTATATATTTTTAAGAAAAC
1 TAAAATAAAATTATATATTTTTAAGAAAAC
16043809 TAAAATAAAATTATATATTTTTAAGAAA
1 TAAAATAAAATTATATATTTTTAAGAAA
16043837 GTTAAGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (30 bp):
TAAAATAAAATTATATATTTTTAAGAAAAC
Found at i:16046075 original size:17 final size:17
Alignment explanation
Indices: 16046028--16046080 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
16046018 ATATTATTTT
*
16046028 TAAAAAGTATTTTTGAGA
1 TAAAAA-TATTTTTGAAA
*
16046046 TAAAAATACTTTTGAAA
1 TAAAAATATTTTTGAAA
*
16046063 TAAAAATATTTTTAAAA
1 TAAAAATATTTTTGAAA
16046080 T
1 T
16046081 TATTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 25 0.81
18 6 0.19
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (17 bp):
TAAAAATATTTTTGAAA
Found at i:16048703 original size:28 final size:28
Alignment explanation
Indices: 16048656--16048709 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
16048646 TCTAATAAAA
* * *
16048656 TAAATTTAATAATATTAAAAATTAAACC
1 TAAATTTAAAAATATGAAAAAATAAACC
*
16048684 TAAATTTAAAAATCTGAAAAAATAAA
1 TAAATTTAAAAATATGAAAAAATAAA
16048710 GTGACTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (28 bp):
TAAATTTAAAAATATGAAAAAATAAACC
Found at i:16051440 original size:8 final size:8
Alignment explanation
Indices: 16051427--16051452 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16051417 TTTTACGTTC
16051427 TCTGGGAT
1 TCTGGGAT
16051435 TCTGGGAT
1 TCTGGGAT
16051443 TCTGGGAT
1 TCTGGGAT
16051451 TC
1 TC
16051453 ATCTCAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.35, T:0.38
Consensus pattern (8 bp):
TCTGGGAT
Found at i:16053070 original size:14 final size:14
Alignment explanation
Indices: 16053051--16053079 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16053041 TGGTGAGTCT
16053051 CTTGAGGCTCTTGG
1 CTTGAGGCTCTTGG
16053065 CTTGAGGCTCTTGG
1 CTTGAGGCTCTTGG
16053079 C
1 C
16053080 AATAGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.24, G:0.34, T:0.34
Consensus pattern (14 bp):
CTTGAGGCTCTTGG
Found at i:16053308 original size:68 final size:68
Alignment explanation
Indices: 16053199--16053334 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
16053189 GAGTATTGCG
16053199 GTTACTGTCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAA
1 GTTACTGTCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAA
16053264 TTT
66 TTT
16053267 GTTACTGTCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAA
1 GTTACTGTCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAA
16053332 TTT
66 TTT
16053335 ATAATATCTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.49
Consensus pattern (68 bp):
GTTACTGTCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAA
TTT
Found at i:16053349 original size:68 final size:68
Alignment explanation
Indices: 16053206--16053351 Score: 240
Period size: 68 Copynumber: 2.1 Consensus size: 68
16053196 GCGGTTACTG
*
16053206 TCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAATTTGTTA
1 TCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAATTTGATA
* *
16053271 CTG
66 ATA
16053274 TCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAATTT-ATA
1 TCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAATTTGATA
16053338 ATA
66 ATA
*
16053341 TCTTATTTATC
1 TC-AATTTATC
16053352 ATTTGTACTA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
67 5 0.07
68 68 0.93
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (68 bp):
TCAATTTATCTTTCTCCTCTTTTGAAAATATTATGCAAATATGATATTAGTATATTAATTTGATA
ATA
Found at i:16057065 original size:576 final size:576
Alignment explanation
Indices: 16056131--16057284 Score: 2308
Period size: 576 Copynumber: 2.0 Consensus size: 576
16056121 ATCAAACATT
16056131 GACAATAAACTATGTCAAACAATGAATTAATCTTTGGACTAACTTATTGCTCACATAAAATACCT
1 GACAATAAACTATGTCAAACAATGAATTAATCTTTGGACTAACTTATTGCTCACATAAAATACCT
16056196 TATAATTGTCACACATTTATCACCACAGATGTCGTTGTAATTCTGCCAAATATTAACTTACCTTT
66 TATAATTGTCACACATTTATCACCACAGATGTCGTTGTAATTCTGCCAAATATTAACTTACCTTT
16056261 AGGTCAATTAATAAACGCATGGATCACAAAAACATATAACCATCTTAATATTTCAAATAAACTAA
131 AGGTCAATTAATAAACGCATGGATCACAAAAACATATAACCATCTTAATATTTCAAATAAACTAA
16056326 TCTACACAAAAGAGGTCACTTTGGCGGCATTTTGTTTCAACTAATTTATTTAAAATATTAGACAT
196 TCTACACAAAAGAGGTCACTTTGGCGGCATTTTGTTTCAACTAATTTATTTAAAATATTAGACAT
16056391 CTTTAATTAAAAGCTAAAATCTGAATTTATTTGTTTCAAAATATTTACCTTAATTTCATCTTTCA
261 CTTTAATTAAAAGCTAAAATCTGAATTTATTTGTTTCAAAATATTTACCTTAATTTCATCTTTCA
16056456 ATCAAATTAAAAGATGATAATATATATTTATTAATATTTATCCCAAAACAACATATAGTGATGTT
326 ATCAAATTAAAAGATGATAATATATATTTATTAATATTTATCCCAAAACAACATATAGTGATGTT
16056521 GGCAAATATAATAATAGCTGAATAAATCAAAATAATCTCACATAAGACTTTAAATTTAAACTAAA
391 GGCAAATATAATAATAGCTGAATAAATCAAAATAATCTCACATAAGACTTTAAATTTAAACTAAA
16056586 ATAATTTGAATAAAGGAAAACCTCATATCAAGATATCGGACACTCCATTAATATTTCATCTTTGG
456 ATAATTTGAATAAAGGAAAACCTCATATCAAGATATCGGACACTCCATTAATATTTCATCTTTGG
16056651 ACAAAATATTAACTTGTAAGTGATATCTTGGTGGAGTAATTAAACATTGACAATAA
521 ACAAAATATTAACTTGTAAGTGATATCTTGGTGGAGTAATTAAACATTGACAATAA
16056707 GACAATAAACTATGTCAAACAATGAATTAATCTTTGGACTAACTTATTGCTCACATAAAATACCT
1 GACAATAAACTATGTCAAACAATGAATTAATCTTTGGACTAACTTATTGCTCACATAAAATACCT
16056772 TATAATTGTCACACATTTATCACCACAGATGTCGTTGTAATTCTGCCAAATATTAACTTACCTTT
66 TATAATTGTCACACATTTATCACCACAGATGTCGTTGTAATTCTGCCAAATATTAACTTACCTTT
16056837 AGGTCAATTAATAAACGCATGGATCACAAAAACATATAACCATCTTAATATTTCAAATAAACTAA
131 AGGTCAATTAATAAACGCATGGATCACAAAAACATATAACCATCTTAATATTTCAAATAAACTAA
16056902 TCTACACAAAAGAGGTCACTTTGGCGGCATTTTGTTTCAACTAATTTATTTAAAATATTAGACAT
196 TCTACACAAAAGAGGTCACTTTGGCGGCATTTTGTTTCAACTAATTTATTTAAAATATTAGACAT
16056967 CTTTAATTAAAAGCTAAAATCTGAATTTATTTGTTTCAAAATATTTACCTTAATTTCATCTTTCA
261 CTTTAATTAAAAGCTAAAATCTGAATTTATTTGTTTCAAAATATTTACCTTAATTTCATCTTTCA
16057032 ATCAAATTAAAAGATGATAATATATATTTATTAATATTTATCCCAAAACAACATATAGTGATGTT
326 ATCAAATTAAAAGATGATAATATATATTTATTAATATTTATCCCAAAACAACATATAGTGATGTT
16057097 GGCAAATATAATAATAGCTGAATAAATCAAAATAATCTCACATAAGACTTTAAATTTAAACTAAA
391 GGCAAATATAATAATAGCTGAATAAATCAAAATAATCTCACATAAGACTTTAAATTTAAACTAAA
16057162 ATAATTTGAATAAAGGAAAACCTCATATCAAGATATCGGACACTCCATTAATATTTCATCTTTGG
456 ATAATTTGAATAAAGGAAAACCTCATATCAAGATATCGGACACTCCATTAATATTTCATCTTTGG
16057227 ACAAAATATTAACTTGTAAGTGATATCTTGGTGGAGTAATTAAACATTGACAATAA
521 ACAAAATATTAACTTGTAAGTGATATCTTGGTGGAGTAATTAAACATTGACAATAA
16057283 GA
1 GA
16057285 ACATGTCGAA
Statistics
Matches: 578, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
576 578 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (576 bp):
GACAATAAACTATGTCAAACAATGAATTAATCTTTGGACTAACTTATTGCTCACATAAAATACCT
TATAATTGTCACACATTTATCACCACAGATGTCGTTGTAATTCTGCCAAATATTAACTTACCTTT
AGGTCAATTAATAAACGCATGGATCACAAAAACATATAACCATCTTAATATTTCAAATAAACTAA
TCTACACAAAAGAGGTCACTTTGGCGGCATTTTGTTTCAACTAATTTATTTAAAATATTAGACAT
CTTTAATTAAAAGCTAAAATCTGAATTTATTTGTTTCAAAATATTTACCTTAATTTCATCTTTCA
ATCAAATTAAAAGATGATAATATATATTTATTAATATTTATCCCAAAACAACATATAGTGATGTT
GGCAAATATAATAATAGCTGAATAAATCAAAATAATCTCACATAAGACTTTAAATTTAAACTAAA
ATAATTTGAATAAAGGAAAACCTCATATCAAGATATCGGACACTCCATTAATATTTCATCTTTGG
ACAAAATATTAACTTGTAAGTGATATCTTGGTGGAGTAATTAAACATTGACAATAA
Done.