Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 65 of 295
Found at i:18820281 original size:10 final size:10
Alignment explanation
Indices: 18820167--18820292 Score: 71
Period size: 10 Copynumber: 12.3 Consensus size: 10
18820157 AAAAATCAAT
18820167 AAAAATTAT-
1 AAAAATTATA
*
18820176 TAAAATT-TA
1 AAAAATTATA
*
18820185 ATAAAATATATT
1 A-AAAAT-TATA
*
18820197 AAAAATTAGA
1 AAAAATTATA
* *
18820207 AATAATCAT-
1 AAAAATTATA
*
18820216 AAAAATCATAA
1 AAAAATTAT-A
18820227 AAGAAATTATA
1 AA-AAATTATA
*
18820238 AAAAATTGTA
1 AAAAATTATA
*
18820248 AAAGAATTGTA
1 AAA-AATTATA
**
18820259 AAATTTTAT-
1 AAAAATTATA
18820268 AAAAATTATA
1 AAAAATTATA
18820278 AAAATATATATA
1 AAAA-AT-TATA
18820290 AAA
1 AAA
18820293 TGCATCAAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
8 1 0.01
9 21 0.23
10 30 0.33
11 23 0.26
12 15 0.17
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.32
Consensus pattern (10 bp):
AAAAATTATA
Found at i:18820287 original size:19 final size:19
Alignment explanation
Indices: 18820141--18820293 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 19
18820131 GACATGGGGC
18820141 AAAAA-ATATAAAAA--AT
1 AAAAATATATAAAAATTAT
18820157 AAAAATCA-ATAAAAATTAT
1 AAAAAT-ATATAAAAATTAT
* *
18820176 TAAAATTTA-ATAAAATATATT
1 AAAAATATATA-AAAAT-TA-T
* *
18820197 AAAAAT-TAGAAATAATCAT
1 AAAAATATATAAA-AATTAT
*
18820216 AAAAATCATAAAAGAAATTAT
1 AAAAAT-ATATAA-AAATTAT
* *
18820237 AAAAA-ATTGTAAAAGAATTGT
1 AAAAATA-TAT-AAA-AATTAT
* *
18820258 AAAATTTTATAAAAATTAT
1 AAAAATATATAAAAATTAT
18820277 AAAAATATATATAAAAT
1 AAAAATATATA-AAAAT
18820294 GCATCAAAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 32
0.69 0.10 0.21
Matches are distributed among these distances:
16 5 0.05
17 7 0.07
18 2 0.02
19 35 0.34
20 17 0.16
21 37 0.36
22 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAAATATATAAAAATTAT
Found at i:18820528 original size:19 final size:20
Alignment explanation
Indices: 18820484--18820530 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
18820474 AATTTTTAGA
*
18820484 AATTTTTTTTACAAATTTTAT
1 AATTTTCTTTAC-AATTTTAT
18820505 -A-TTTCTTTAC-ATTTTAT
1 AATTTTCTTTACAATTTTAT
18820522 AATTTTCTT
1 AATTTTCTT
18820531 ACGACTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 7 0.30
18 1 0.04
19 14 0.61
20 1 0.04
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (20 bp):
AATTTTCTTTACAATTTTAT
Found at i:18820532 original size:18 final size:19
Alignment explanation
Indices: 18820498--18820542 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
18820488 TTTTTTACAA
18820498 ATTTTAT-ATTTCTTTAC-
1 ATTTTATAATTTCTTTACG
18820515 ATTTTATAATTT-TCTTACG
1 ATTTTATAATTTCT-TTACG
*
18820534 ACTTTATAA
1 ATTTTATAA
18820543 AATTTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 8 0.33
18 8 0.33
19 8 0.33
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTTATAATTTCTTTACG
Found at i:18820623 original size:29 final size:29
Alignment explanation
Indices: 18820576--18820641 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
18820566 TTTTTATAAA
*
18820576 TTTTAATAAAAGTTAAATATCAATTTATA-T
1 TTTTATTAAAAGTTAAATA--AATTTATATT
* *
18820606 TTTTATTAAAA-TTTAATAATTTTATATT
1 TTTTATTAAAAGTTAAATAAATTTATATT
18820634 TTTTATTA
1 TTTTATTA
18820642 TTTTTTACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 7 0.22
28 9 0.28
29 6 0.19
30 10 0.31
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (29 bp):
TTTTATTAAAAGTTAAATAAATTTATATT
Found at i:18821076 original size:19 final size:19
Alignment explanation
Indices: 18821029--18821068 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
18821019 ATTTTGTCTT
18821029 GGTTTTT-A-TTT-CTTTG
1 GGTTTTTGACTTTGCTTTG
18821045 GGTTTTTGACTTTGCTTT-
1 GGTTTTTGACTTTGCTTTG
18821063 GGTTTT
1 GGTTTT
18821069 CTGGCTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 7 0.33
17 1 0.05
18 9 0.43
19 4 0.19
ACGTcount: A:0.05, C:0.07, G:0.23, T:0.65
Consensus pattern (19 bp):
GGTTTTTGACTTTGCTTTG
Found at i:18822518 original size:17 final size:17
Alignment explanation
Indices: 18822469--18822520 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
18822459 AGTATGAGAA
*
18822469 GTAATCTTAGAAGATAT
1 GTAATCTTAGAAGATTT
* *
18822486 GCAATTTTAGAAGATTT
1 GTAATCTTAGAAGATTT
18822503 GTAATCTTAGAAGATTT
1 GTAATCTTAGAAGATTT
18822520 G
1 G
18822521 ATTATGTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (17 bp):
GTAATCTTAGAAGATTT
Found at i:18822533 original size:24 final size:22
Alignment explanation
Indices: 18822498--18822550 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
18822488 AATTTTAGAA
18822498 GATTTGT-AATCTTAGAAGATTT
1 GATTTGTAAATCTTAG-AGATTT
18822520 GATTATGTAAATCTTAGAGATTT
1 GATT-TGTAAATCTTAGAGATTT
*
18822543 AATTTGTA
1 GATTTGTA
18822551 GATTGCTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 8 0.29
23 12 0.43
24 8 0.29
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (22 bp):
GATTTGTAAATCTTAGAGATTT
Found at i:18826658 original size:75 final size:75
Alignment explanation
Indices: 18826533--18826678 Score: 265
Period size: 75 Copynumber: 1.9 Consensus size: 75
18826523 AGTTTTACTA
*
18826533 ACCTAATATTAAAACCATAAATAGTGAACTAATAATATACTTACCGTTTATCAAATAAAAATGAT
1 ACCTAATATTAAAACCATAAATAGTGAACTAATAATATACTTACCATTTATCAAATAAAAATGAT
18826598 ATACTTTCCC
66 ATACTTTCCC
* *
18826608 ACCTAATATTATAACCATAAATAGTTAACTAATAATATACTTACCATTTATCAAATAAAAATGAT
1 ACCTAATATTAAAACCATAAATAGTGAACTAATAATATACTTACCATTTATCAAATAAAAATGAT
18826673 ATACTT
66 ATACTT
18826679 GCCAATTTTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.34
Consensus pattern (75 bp):
ACCTAATATTAAAACCATAAATAGTGAACTAATAATATACTTACCATTTATCAAATAAAAATGAT
ATACTTTCCC
Found at i:18826796 original size:16 final size:16
Alignment explanation
Indices: 18826777--18826828 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
18826767 TGGTTGGCTA
18826777 TAATGGAATA-AGGCTG
1 TAATGGAATAGA-GCTG
* *
18826793 TAATTGAATAGAGTTG
1 TAATGGAATAGAGCTG
18826809 TAATGGAATAGAGCTG
1 TAATGGAATAGAGCTG
18826825 TAAT
1 TAAT
18826829 CAGTAATTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 30 0.97
17 1 0.03
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (16 bp):
TAATGGAATAGAGCTG
Found at i:18835799 original size:42 final size:42
Alignment explanation
Indices: 18835725--18835850 Score: 134
Period size: 42 Copynumber: 3.0 Consensus size: 42
18835715 GTGCTAACGG
* *
18835725 AAACCAGTAAAGGTTAAA-TAAAAGCTCATAAGAGTTTAA-TGAA
1 AAACCAGT-AGGGTTAAACTAAAA-CTCATAAGAGTTGAACTG-A
*
18835768 AAACCAGTAGGGTTAAACTAAAACTCGTAAGAGTTGAACTGA
1 AAACCAGTAGGGTTAAACTAAAACTCATAAGAGTTGAACTGA
* * * *
18835810 AACCCAATAGGGTT-AACTGAAACTCATATGAGTT-AACTGA
1 AAACCAGTAGGGTTAAACTAAAACTCATAAGAGTTGAACTGA
18835850 A
1 A
18835851 GCTTATGAGA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 7 0.10
41 17 0.23
42 34 0.47
43 15 0.21
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.23
Consensus pattern (42 bp):
AAACCAGTAGGGTTAAACTAAAACTCATAAGAGTTGAACTGA
Found at i:18835829 original size:20 final size:20
Alignment explanation
Indices: 18835798--18835850 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
18835788 AAACTCGTAA
18835798 GAGTTGAACTGAAACCCA-AT
1 GAGTT-AACTGAAACCCATAT
* *
18835818 AGGGTTAACTGAAACTCATAT
1 -GAGTTAACTGAAACCCATAT
18835839 GAGTTAACTGAA
1 GAGTTAACTGAA
18835851 GCTTATGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 22 0.79
21 6 0.21
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (20 bp):
GAGTTAACTGAAACCCATAT
Found at i:18835859 original size:18 final size:19
Alignment explanation
Indices: 18835821--18835859 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
18835811 ACCCAATAGG
18835821 GTTAACTGAAACTCATATGA
1 GTTAACTGAAACT-ATATGA
*
18835841 GTTAACTGAAGCT-TATGA
1 GTTAACTGAAACTATATGA
18835859 G
1 G
18835860 AGCTAAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (19 bp):
GTTAACTGAAACTATATGA
Found at i:18837850 original size:27 final size:27
Alignment explanation
Indices: 18837820--18837873 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
18837810 CATGATAGTC
*
18837820 GACAATTTTAGGGGGGAAAATTGCACA
1 GACAATTTTAGGGGGAAAAATTGCACA
18837847 GACAATTTTAGGGGGAAAAATTGCACA
1 GACAATTTTAGGGGGAAAAATTGCACA
18837874 AATTTTCTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (27 bp):
GACAATTTTAGGGGGAAAAATTGCACA
Found at i:18841553 original size:16 final size:17
Alignment explanation
Indices: 18841532--18841563 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
18841522 AAAATAAATT
18841532 GTTAAAAAATA-AAAAA
1 GTTAAAAAATATAAAAA
18841548 GTTAAAAAATATAAAA
1 GTTAAAAAATATAAAA
18841564 CTCAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (17 bp):
GTTAAAAAATATAAAAA
Found at i:18841765 original size:19 final size:21
Alignment explanation
Indices: 18841730--18841771 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
18841720 AATTTTAAAA
18841730 TTTTTATATATTTAAAT-ATT
1 TTTTTATATATTTAAATAATT
18841750 TTTTTA-AT-TTTGAAATAATT
1 TTTTTATATATTT-AAATAATT
18841770 TT
1 TT
18841772 AGTTTTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.15
19 6 0.30
20 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTTATATATTTAAATAATT
Found at i:18841771 original size:17 final size:17
Alignment explanation
Indices: 18841751--18841801 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
18841741 TTAAATATTT
*
18841751 TTTTAATTTTGAAATAA
1 TTTTAATTTTTAAATAA
* **
18841768 TTTTAGTTTTTTCATAA
1 TTTTAATTTTTAAATAA
18841785 TTTTATATTTTTAAATA
1 TTTTA-ATTTTTAAATA
18841802 TATATTTTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (17 bp):
TTTTAATTTTTAAATAA
Found at i:18843419 original size:18 final size:18
Alignment explanation
Indices: 18843377--18843421 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
18843367 GAAAAATAAG
18843377 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
18843394 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
18843411 AATTTTTGAAA
1 AATTTTTGAAA
18843422 CCTAATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:18844046 original size:15 final size:17
Alignment explanation
Indices: 18844026--18844057 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
18844016 TTAGGAAACG
18844026 TACATAA-A-AAATATA
1 TACATAATATAAATATA
18844041 TACATAATATAAATATA
1 TACATAATATAAATATA
18844058 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:18844598 original size:11 final size:11
Alignment explanation
Indices: 18844565--18844605 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
18844555 AAATCATTTT
18844565 GAAGAGAGAAA
1 GAAGAGAGAAA
*
18844576 GAA-A-AAAAA
1 GAAGAGAGAAA
*
18844585 GAAGGGAGAAA
1 GAAGAGAGAAA
18844596 GAAGAGAGAA
1 GAAGAGAGAA
18844606 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:18856682 original size:7 final size:7
Alignment explanation
Indices: 18856670--18856707 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
18856660 TCCCTCTCTC
18856670 TTTTTCT
1 TTTTTCT
18856677 TTTTTCT
1 TTTTTCT
18856684 TTTTTC-
1 TTTTTCT
18856690 -TTTTCT
1 TTTTTCT
*
18856696 TTTCTCT
1 TTTTTCT
18856703 TTTTT
1 TTTTT
18856708 TTAAGATGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 5 0.19
7 22 0.81
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:18856693 original size:12 final size:12
Alignment explanation
Indices: 18856668--18856709 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
18856658 GATCCCTCTC
*
18856668 TCTTTTTCTTTTT
1 TCTTTTT-TCTTT
18856681 TCTTTTTTCTTT
1 TCTTTTTTCTTT
*
18856693 TCTTTTCTCTTT
1 TCTTTTTTCTTT
18856705 T-TTTT
1 TCTTTT
18856710 AAGATGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 4 0.15
12 16 0.59
13 7 0.26
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TCTTTTTTCTTT
Found at i:18856695 original size:19 final size:19
Alignment explanation
Indices: 18856671--18856707 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
18856661 CCCTCTCTCT
*
18856671 TTTTCTTTTTTCTTTTTTC
1 TTTTCTTTTCTCTTTTTTC
18856690 TTTTCTTTTCTCTTTTTT
1 TTTTCTTTTCTCTTTTTT
18856708 TTAAGATGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTCTTTTCTCTTTTTTC
Found at i:18865971 original size:18 final size:18
Alignment explanation
Indices: 18865929--18866020 Score: 84
Period size: 17 Copynumber: 5.1 Consensus size: 18
18865919 GAAAAATAAG
18865929 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
18865946 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
18865963 AATTTTTG-AAAC-CTGAA
1 AATTTTTGAAAACAC-GAA
**
18865980 TTTTTTTTAGAAAAACACGAA
1 -AATTTTT-G-AAAACACGAA
* *
18866001 AAATTTTGGAAACACGAA
1 AATTTTTGAAAACACGAA
18866019 AA
1 AA
18866021 GTTTACAACA
Statistics
Matches: 61, Mismatches: 6, Indels: 15
0.74 0.07 0.18
Matches are distributed among these distances:
16 5 0.08
17 21 0.34
18 21 0.34
19 2 0.03
20 4 0.07
21 7 0.11
22 1 0.02
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:18867145 original size:11 final size:11
Alignment explanation
Indices: 18867111--18867152 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
18867101 AAATCATTTT
18867111 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
18867122 GAA-AAAAAAA
1 GAAGAGAGAAA
*
18867132 GAAGGGAGAAA
1 GAAGAGAGAAA
18867143 GAAGAGAGAA
1 GAAGAGAGAA
18867153 GGGAGGGGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:18872664 original size:19 final size:19
Alignment explanation
Indices: 18872640--18872677 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
18872630 AAAATATTTT
18872640 TTATAATGTTTTA-AAAAAA
1 TTATAAT-TTTTATAAAAAA
18872659 TTATAATTTTTATAAAAAA
1 TTATAATTTTTATAAAAAA
18872678 AAACTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
TTATAATTTTTATAAAAAA
Found at i:18875033 original size:58 final size:58
Alignment explanation
Indices: 18874965--18875124 Score: 268
Period size: 59 Copynumber: 2.8 Consensus size: 58
18874955 ATTATTCCCT
18874965 CATTGGGGCTTGAACTTGTTTTTTCCAAGTTAGTCCCTTAACTTGGTAATTGCTCTCA
1 CATTGGGGCTTGAACTTGTTTTTTCCAAGTTAGTCCCTTAACTTGGTAATTGCTCTCA
*
18875023 CATTGGGGCTTGAACTTGTTTTTTTCCAAGTTAGTCCCTTAACCTGGTAATTGCTCTCA
1 CATTGGGGCTTGAACTTG-TTTTTTCCAAGTTAGTCCCTTAACTTGGTAATTGCTCTCA
* * *
18875082 CATTGGGGCTTAAACAT-TTTTTTCCAAGTTAGTCCCTGAACTT
1 CATTGGGGCTTGAACTTGTTTTTTCCAAGTTAGTCCCTTAACTT
18875125 TTTTTGGGTC
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
57 24 0.25
58 18 0.19
59 54 0.56
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (58 bp):
CATTGGGGCTTGAACTTGTTTTTTCCAAGTTAGTCCCTTAACTTGGTAATTGCTCTCA
Found at i:18888114 original size:26 final size:25
Alignment explanation
Indices: 18888084--18888139 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
18888074 AATACCTTTT
*
18888084 AATTAATTAATA-TAAATTATTTATAA
1 AATTAA-TAATACTAAAATATTT-TAA
18888110 AATTAATAATACTTAAAATATTTTAA
1 AATTAATAATAC-TAAAATATTTTAA
18888136 AATT
1 AATT
18888140 TTAAATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 5 0.19
26 13 0.48
27 9 0.33
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
AATTAATAATACTAAAATATTTTAA
Found at i:18888196 original size:33 final size:33
Alignment explanation
Indices: 18888117--18888228 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 33
18888107 TAAAATTAAT
* * *
18888117 AATACTTAAAATATTTTAA-AATTT--TAAATAT
1 AATACATAAAATATTTAAATAATTTAATAAA-AC
18888148 AATA-ATAAATTATATTTAAATAATTTAATAAAAC
1 AATACATAAA--ATATTTAAATAATTTAATAAAAC
* * *
18888182 AATACATGAAATATTTAAATAATTTAATATAAT
1 AATACATAAAATATTTAAATAATTTAATAAAAC
*
18888215 AGTACATAAAATAT
1 AATACATAAAATAT
18888229 AAATTAATCT
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
30 4 0.06
31 4 0.06
32 8 0.12
33 38 0.57
34 5 0.07
35 8 0.12
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (33 bp):
AATACATAAAATATTTAAATAATTTAATAAAAC
Found at i:18898986 original size:20 final size:20
Alignment explanation
Indices: 18898961--18898999 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
18898951 AATATCAAGA
18898961 CATAATTGATACAAAATTAT
1 CATAATTGATACAAAATTAT
18898981 CATAATTGATACAAAATTA
1 CATAATTGATACAAAATTA
18899000 CTTAAGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (20 bp):
CATAATTGATACAAAATTAT
Found at i:18906108 original size:6 final size:6
Alignment explanation
Indices: 18906094--18906131 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
18906084 TAAGATTAGA
*
18906094 TTTGAT TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT TT
1 TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT TT
18906132 ACTTTTTGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.03, C:0.00, G:0.29, T:0.68
Consensus pattern (6 bp):
TTTGGT
Found at i:18906138 original size:18 final size:18
Alignment explanation
Indices: 18906099--18906140 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
18906089 TTAGATTTGA
**
18906099 TTTTGGTTTTGGTTTTGG
1 TTTTGGTTTTGGTTTACG
*
18906117 TTTTGGTTTTGGTTTACT
1 TTTTGGTTTTGGTTTACG
18906135 TTTTGG
1 TTTTGG
18906141 GGGGTTAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.02, C:0.02, G:0.29, T:0.67
Consensus pattern (18 bp):
TTTTGGTTTTGGTTTACG
Found at i:18906935 original size:27 final size:27
Alignment explanation
Indices: 18906904--18906957 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
18906894 AAAAAAATGG
18906904 AAAGTTTTCTTTAACTTTAAATTTAAT
1 AAAGTTTTCTTTAACTTTAAATTTAAT
18906931 AAAGTTTTCTTTAACTTTAAATTTAAT
1 AAAGTTTTCTTTAACTTTAAATTTAAT
18906958 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (27 bp):
AAAGTTTTCTTTAACTTTAAATTTAAT
Found at i:18909097 original size:15 final size:15
Alignment explanation
Indices: 18909073--18909145 Score: 60
Period size: 16 Copynumber: 4.7 Consensus size: 15
18909063 TTGAAAAATT
18909073 AAAAGCAAAAGAATAA
1 AAAAG-AAAAGAATAA
* *
18909089 AAAAGAAAAGAGTGA
1 AAAAGAAAAGAATAA
*
18909104 AAAAGAAAAAGAAAAA
1 AAAAG-AAAAGAATAA
18909120 AAAACTG-AAAGAA-AA
1 AAAA--GAAAAGAATAA
18909135 GAAAAGAAAAG
1 -AAAAGAAAAG
18909146 TAAGAGGTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
14 1 0.02
15 19 0.40
16 26 0.55
18 1 0.02
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.04
Consensus pattern (15 bp):
AAAAGAAAAGAATAA
Found at i:18916305 original size:46 final size:48
Alignment explanation
Indices: 18916238--18916334 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 48
18916228 ACAGGACAAA
* * *
18916238 AATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGAGACAGG
*
18916284 AATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGAGACAGG
18916332 AAT
1 AAT
18916335 AATTCATGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 22 0.49
47 1 0.02
48 22 0.49
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (48 bp):
AATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGAGACAGG
Found at i:18919944 original size:7 final size:7
Alignment explanation
Indices: 18919929--18919959 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
18919919 ATTTTTTGAT
*
18919929 ATTTTAA
1 ATTTAAA
18919936 ATTTAAA
1 ATTTAAA
18919943 ATTTAAA
1 ATTTAAA
18919950 ATTTAAA
1 ATTTAAA
18919957 ATT
1 ATT
18919960 AGAATATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTAAA
Found at i:18923598 original size:31 final size:31
Alignment explanation
Indices: 18923560--18923738 Score: 222
Period size: 31 Copynumber: 5.8 Consensus size: 31
18923550 ACAAATGACA
*
18923560 AGTGAAAAGTGGTAGCTTCAGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
18923591 AGTGAAAAGTGGTAGCTTCTG-TACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
18923621 AGTAAAAAGTGGTAG-TTCCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTT-CAGCTACCTGATC
*
18923652 AGTGAAAAGTGGTAGC-TCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAG-CTACCTGATC
*
18923683 AGTGAAAAATGGTAGC-TCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-AGCTACCTGATC
** *
18923714 AGTGAATTGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
18923739 AAATGACAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
29 2 0.02
30 27 0.21
31 97 0.75
32 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:18923842 original size:47 final size:46
Alignment explanation
Indices: 18923756--18923877 Score: 127
Period size: 47 Copynumber: 2.6 Consensus size: 46
18923746 AAGTGATTTC
* * *** * *
18923756 CGTATAAGATCATATCTGGGATATGTCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATAAATGAGATATATGATA
*
18923802 CAGTATAAGACCATATCTGGGATATGGCATAAATGAGATATATGATT
1 C-GTATAAGACCATATCTGGGATATGGCATAAATGAGATATATGATA
* * * *
18923849 CGTGTAAGACCATAGCTAGGCTATGGCAT
1 CGTATAAGACCATATCTGGGATATGGCAT
18923878 CGATATATGA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
46 25 0.40
47 38 0.60
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATAAATGAGATATATGATA
Found at i:18923874 original size:46 final size:42
Alignment explanation
Indices: 18923807--18923917 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 42
18923797 TGCTACAGTA
* * *
18923807 TAAGACCATATCTGGGATATGGCATAAATGAGATATATGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCAT--AT-AGATATATGAAT-GTG
* *
18923853 TAAGACCATAGCTAGGCTATGGC--ATCGATATATGAATGTG
1 TAAGACCATAGCTGGGCTATGGCATATAGATATATGAATGTG
*
18923893 TAAGACCATAGCTGGGCTACGGCAT
1 TAAGACCATAGCTGGGCTATGGCAT
18923918 CATTATGTGA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
40 24 0.43
41 10 0.18
42 2 0.04
46 20 0.36
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAGACCATAGCTGGGCTATGGCATATAGATATATGAATGTG
Found at i:18923898 original size:40 final size:40
Alignment explanation
Indices: 18923838--18923962 Score: 128
Period size: 40 Copynumber: 3.0 Consensus size: 40
18923828 GCATAAATGA
*
18923838 GATATATGATTCGTGTAAGACCATAGCTAGGCTATGGCATC
1 GATATATGAAT-GTGTAAGACCATAGCTAGGCTATGGCATC
* *
18923879 GATATATGAATGTGTAAGACCATAGCTGGGCTACGGCATC
1 GATATATGAATGTGTAAGACCATAGCTAGGCTATGGCATC
* * * *
18923919 -ATTATGTGAAGATGTGTAAAACCATAG-TTGAACTATGGCATC
1 GA-TATATG-A-ATGTGTAAGACCATAGCTAG-GCTATGGCATC
18923961 GA
1 GA
18923963 GAAAACGAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.01
40 32 0.45
41 13 0.18
42 24 0.34
43 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (40 bp):
GATATATGAATGTGTAAGACCATAGCTAGGCTATGGCATC
Found at i:18937850 original size:20 final size:20
Alignment explanation
Indices: 18937825--18937867 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
18937815 AAAGTAAAGA
18937825 AGTATCCTTATGCTAGTGTC
1 AGTATCCTTATGCTAGTGTC
18937845 AGTATCCTTATGCTAGTGTC
1 AGTATCCTTATGCTAGTGTC
18937865 AGT
1 AGT
18937868 TTTATTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
AGTATCCTTATGCTAGTGTC
Found at i:18938769 original size:46 final size:46
Alignment explanation
Indices: 18938702--18938793 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
18938692 CCCCAAGTGG
18938702 CTTGTTCAGTTAATAAGGGGACGGACTCGTCAACTTGGCCTTCGAT
1 CTTGTTCAGTTAATAAGGGGACGGACTCGTCAACTTGGCCTTCGAT
18938748 CTTGTTCAGTTAATAAGGGGACGGACTCGTCAACTTGGCCTTCGAT
1 CTTGTTCAGTTAATAAGGGGACGGACTCGTCAACTTGGCCTTCGAT
18938794 TTCATATACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
CTTGTTCAGTTAATAAGGGGACGGACTCGTCAACTTGGCCTTCGAT
Found at i:18941476 original size:29 final size:30
Alignment explanation
Indices: 18941434--18941514 Score: 74
Period size: 29 Copynumber: 2.7 Consensus size: 30
18941424 GGATTGAATC
* *
18941434 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTACACAT
* * *
18941464 AAATCAAAGTTCATATATACAATTATACATT
1 AAATCAAAGTTCATGTATAAAATTACACA-T
* *
18941495 AAATCATAGTTTATGTATAA
1 AAATCAAAGTTCATGTATAA
18941515 TTTAATATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 19 0.47
30 5 0.12
31 16 0.40
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.35
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTACACAT
Found at i:18942252 original size:47 final size:47
Alignment explanation
Indices: 18942183--18942275 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
18942173 AGATATTGCC
*
18942183 ACTACTTATTTCATTTTTGGGTGAAGTTTGTGAGAAAAAAAAGATCA
1 ACTACTTATTTCATTTTTGGGTGAAGATTGTGAGAAAAAAAAGATCA
18942230 ACTACTTATTTCATTTTTGGGTGAAGATTGTGAGAAAAAAAAGATC
1 ACTACTTATTTCATTTTTGGGTGAAGATTGTGAGAAAAAAAAGATC
18942276 TCGATAGGTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (47 bp):
ACTACTTATTTCATTTTTGGGTGAAGATTGTGAGAAAAAAAAGATCA
Found at i:18952831 original size:18 final size:18
Alignment explanation
Indices: 18952810--18952848 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
18952800 TAAAATAAAA
*
18952810 ATTTAAATAAAAACTATT
1 ATTTAAATAAAAAATATT
**
18952828 ATTTTTATAAAAAATATT
1 ATTTAAATAAAAAATATT
18952846 ATT
1 ATT
18952849 GATTTAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTAAATAAAAAATATT
Found at i:18952856 original size:18 final size:18
Alignment explanation
Indices: 18952816--18952862 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
18952806 AAAAATTTAA
* *
18952816 ATAAAAACTATTATTTTT
1 ATAAAAAATATTATTATT
18952834 ATAAAAAATATTATTGATT
1 ATAAAAAATATTATT-ATT
*
18952853 -TAAATAATAT
1 ATAAAAAATAT
18952863 ATTTTTACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATAAAAAATATTATTATT
Found at i:18953878 original size:14 final size:14
Alignment explanation
Indices: 18953861--18953909 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
18953851 TTAAAAATGC
18953861 ATATTTAATTATTT
1 ATATTTAATTATTT
*
18953875 ATATTT--TTGA-TA
1 ATATTTAATT-ATTT
*
18953887 AAATTTAATTATTT
1 ATATTTAATTATTT
18953901 ATATTTAAT
1 ATATTTAAT
18953910 AATATAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
12 8 0.30
13 2 0.07
14 17 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (14 bp):
ATATTTAATTATTT
Found at i:18953922 original size:26 final size:26
Alignment explanation
Indices: 18953867--18953925 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
18953857 ATGCATATTT
* * *
18953867 AATTATTTATATTTTTGATAAAATTT
1 AATTATTTATATTTATAATAAAATTA
*
18953893 AATTATTTATATTTAATAATATAA-TA
1 AATTATTTATATTT-ATAATAAAATTA
18953919 AATTATT
1 AATTATT
18953926 AATAAAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (26 bp):
AATTATTTATATTTATAATAAAATTA
Found at i:18954072 original size:11 final size:11
Alignment explanation
Indices: 18954013--18954072 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
18954003 TAATTTTAAA
*
18954013 ATTTAAATAAT
1 ATTTTAATAAT
18954024 ATTCTTAA-AAT
1 ATT-TTAATAAT
*
18954035 ATTATTGAAAAAT
1 ATT-TT-AATAAT
*
18954048 ATTTATATTAAT
1 ATTT-TAATAAT
18954060 ATTTTAATAAT
1 ATTTTAATAAT
18954071 AT
1 AT
18954073 ATATTACAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
11 19 0.47
12 14 0.35
13 7 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (11 bp):
ATTTTAATAAT
Found at i:18954098 original size:23 final size:21
Alignment explanation
Indices: 18954044--18954094 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
18954034 TATTATTGAA
18954044 AAATATTTATATTAATATTTT
1 AAATATTTATATTAATATTTT
*
18954065 -AATAATATATATTACA-ATTTAT
1 AAAT-ATTTATATTA-ATATTT-T
18954087 AAATATTT
1 AAATATTT
18954095 TATAGTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
20 3 0.12
21 13 0.54
22 5 0.21
23 3 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
AAATATTTATATTAATATTTT
Found at i:18956285 original size:22 final size:22
Alignment explanation
Indices: 18956260--18956345 Score: 56
Period size: 22 Copynumber: 4.0 Consensus size: 22
18956250 ATTATTAAAT
18956260 TTATATATGATATTTATTATTA
1 TTATATATGATATTTATTATTA
* * * *
18956282 TTAT-TATAAAATATTATCA-AA
1 TTATATATGATAT-TTATTATTA
* *
18956303 TTAGATAT--TCTTTATTATGT-
1 TTATATATGATATTTATTAT-TA
*
18956323 TTATATATGATTTTTATTATTA
1 TTATATATGATATTTATTATTA
18956345 T
1 T
18956346 AAAATATTAT
Statistics
Matches: 46, Mismatches: 11, Indels: 14
0.65 0.15 0.20
Matches are distributed among these distances:
19 5 0.11
20 8 0.17
21 11 0.24
22 22 0.48
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (22 bp):
TTATATATGATATTTATTATTA
Found at i:18967226 original size:331 final size:331
Alignment explanation
Indices: 18966624--18967286 Score: 1326
Period size: 331 Copynumber: 2.0 Consensus size: 331
18966614 TATCCATTTA
18966624 ACTGGCTACTCTATAAATACTATATTGGGTATGATTAACCCATAATAATAAAAATATCTTTAATT
1 ACTGGCTACTCTATAAATACTATATTGGGTATGATTAACCCATAATAATAAAAATATCTTTAATT
18966689 TACAAAATAAATTATATATTATTTTTGTTATTTATATATTTTATGAAAATAATAAGATTTTAGGT
66 TACAAAATAAATTATATATTATTTTTGTTATTTATATATTTTATGAAAATAATAAGATTTTAGGT
18966754 GAAACAATTATAATTTTTAACATTTGTATTTTATCATTAAAGTATTTATATCAAATTTGTTATTT
131 GAAACAATTATAATTTTTAACATTTGTATTTTATCATTAAAGTATTTATATCAAATTTGTTATTT
18966819 AATTTTGTTTTTTACCCACAATCTACACTATTATTTAAAAGTTTTTGATTGAATTTGTCTCCTGC
196 AATTTTGTTTTTTACCCACAATCTACACTATTATTTAAAAGTTTTTGATTGAATTTGTCTCCTGC
18966884 AATCGAATCCCAGCTAAGTTATGAAATTATCAAAAGCTCAACATTTTAATAAAGCAATAAATATA
261 AATCGAATCCCAGCTAAGTTATGAAATTATCAAAAGCTCAACATTTTAATAAAGCAATAAATATA
18966949 ATTTTG
326 ATTTTG
18966955 ACTGGCTACTCTATAAATACTATATTGGGTATGATTAACCCATAATAATAAAAATATCTTTAATT
1 ACTGGCTACTCTATAAATACTATATTGGGTATGATTAACCCATAATAATAAAAATATCTTTAATT
18967020 TACAAAATAAATTATATATTATTTTTGTTATTTATATATTTTATGAAAATAATAAGATTTTAGGT
66 TACAAAATAAATTATATATTATTTTTGTTATTTATATATTTTATGAAAATAATAAGATTTTAGGT
18967085 GAAACAATTATAATTTTTAACATTTGTATTTTATCATTAAAGTATTTATATCAAATTTGTTATTT
131 GAAACAATTATAATTTTTAACATTTGTATTTTATCATTAAAGTATTTATATCAAATTTGTTATTT
18967150 AATTTTGTTTTTTACCCACAATCTACACTATTATTTAAAAGTTTTTGATTGAATTTGTCTCCTGC
196 AATTTTGTTTTTTACCCACAATCTACACTATTATTTAAAAGTTTTTGATTGAATTTGTCTCCTGC
18967215 AATCGAATCCCAGCTAAGTTATGAAATTATCAAAAGCTCAACATTTTAATAAAGCAATAAATATA
261 AATCGAATCCCAGCTAAGTTATGAAATTATCAAAAGCTCAACATTTTAATAAAGCAATAAATATA
18967280 ATTTTG
326 ATTTTG
18967286 A
1 A
18967287 GAGTACTTTT
Statistics
Matches: 332, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
331 332 1.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (331 bp):
ACTGGCTACTCTATAAATACTATATTGGGTATGATTAACCCATAATAATAAAAATATCTTTAATT
TACAAAATAAATTATATATTATTTTTGTTATTTATATATTTTATGAAAATAATAAGATTTTAGGT
GAAACAATTATAATTTTTAACATTTGTATTTTATCATTAAAGTATTTATATCAAATTTGTTATTT
AATTTTGTTTTTTACCCACAATCTACACTATTATTTAAAAGTTTTTGATTGAATTTGTCTCCTGC
AATCGAATCCCAGCTAAGTTATGAAATTATCAAAAGCTCAACATTTTAATAAAGCAATAAATATA
ATTTTG
Found at i:18968131 original size:31 final size:31
Alignment explanation
Indices: 18968091--18968158 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
18968081 TTTAATACCC
* *
18968091 TAATAACTTAAATAAAATTTTTTAAATAGTT
1 TAATAACTTAAATAAAAATATTTAAATAGTT
* *
18968122 TAATTACTTAAATAAAAATATTTAAATAATT
1 TAATAACTTAAATAAAAATATTTAAATAGTT
*
18968153 AAATAA
1 TAATAA
18968159 TATTTTTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (31 bp):
TAATAACTTAAATAAAAATATTTAAATAGTT
Found at i:18968154 original size:22 final size:23
Alignment explanation
Indices: 18968114--18968158 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
18968104 AAAATTTTTT
* *
18968114 AAATAGTTTAATTACTTAAATAA
1 AAATAGTTTAAATAATTAAATAA
18968137 AAATA-TTTAAATAATTAAATAA
1 AAATAGTTTAAATAATTAAATAA
18968159 TATTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (23 bp):
AAATAGTTTAAATAATTAAATAA
Found at i:18974813 original size:13 final size:13
Alignment explanation
Indices: 18974795--18974821 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18974785 AGAAACCAAA
18974795 TTGATTATACCAG
1 TTGATTATACCAG
18974808 TTGATTATACCAG
1 TTGATTATACCAG
18974821 T
1 T
18974822 AAAGTATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGATTATACCAG
Found at i:18976486 original size:30 final size:30
Alignment explanation
Indices: 18976445--18976502 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
18976435 TATTGTTAAT
18976445 TTTTATTATTATTTTAAAGACATTTGCTAA
1 TTTTATTATTATTTTAAAGACATTTGCTAA
* * *
18976475 TTTTGTTATTATTTTAGAGGCATTTGCT
1 TTTTATTATTATTTTAAAGACATTTGCT
18976503 TGTTAAGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.07, G:0.12, T:0.55
Consensus pattern (30 bp):
TTTTATTATTATTTTAAAGACATTTGCTAA
Found at i:18976604 original size:18 final size:20
Alignment explanation
Indices: 18976583--18976623 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
18976573 GAAATATTTA
*
18976583 TTTTGAT-GTTTTTA-ATAT
1 TTTTGATGGTTTATATATAT
18976601 TTTTGATGGTTTATATATAT
1 TTTTGATGGTTTATATATAT
18976621 TTT
1 TTT
18976624 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (20 bp):
TTTTGATGGTTTATATATAT
Found at i:18980828 original size:26 final size:25
Alignment explanation
Indices: 18980788--18980836 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
18980778 TCTCATCCCA
18980788 ATTTTACTCCAGTAAAATTTTGATG
1 ATTTTACTCCAGTAAAATTTTGATG
*
18980813 ATTTTAGCTCCGGTAAAATTTTGA
1 ATTTTA-CTCCAGTAAAATTTTGA
18980837 GAAAATTCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (25 bp):
ATTTTACTCCAGTAAAATTTTGATG
Found at i:18989688 original size:20 final size:21
Alignment explanation
Indices: 18989659--18989698 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
18989649 AGTTAATATT
18989659 TATTGATTAA-AAAAATTATG
1 TATTGATTAATAAAAATTATG
* *
18989679 TATTGTTTAATAAAAGTTAT
1 TATTGATTAATAAAAATTAT
18989699 TTTAAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (21 bp):
TATTGATTAATAAAAATTATG
Found at i:18992714 original size:10 final size:10
Alignment explanation
Indices: 18992699--18992724 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
18992689 AAGAATTTTT
18992699 AAAAAAAATA
1 AAAAAAAATA
18992709 AAAAAAAATA
1 AAAAAAAATA
18992719 AAAAAA
1 AAAAAA
18992725 TATATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:18994379 original size:44 final size:44
Alignment explanation
Indices: 18994343--18994544 Score: 146
Period size: 44 Copynumber: 4.5 Consensus size: 44
18994333 TTCAGTCTGT
*
18994343 TTCCCTACTGCTTAGGGGGATAAGGCT-CACCGTCTTCAATCC-G
1 TTCCCTACTGCTTAGGGAGATAAGGCTGCACCGTCTTCAA-CCTG
* * * * * * *
18994386 CTCCACTACTGTTTAGGGAGATAAGATCTGTA--ATTTTCAACCCG
1 TTCC-CTACTGCTTAGGGAGATAAG-GCTGCACCGTCTTCAACCTG
* ** *
18994430 TTCCCTACTGCTTAGAGAGATAAGG-TGGTCTGTCATTTTCAACCTG
1 TTCCCTACTGCTTAGGGAGATAAGGCTGCACCGTC---TTCAACCTG
* * *
18994476 TTTCCCTACTGCTTAGGGGGATAAGGCT-CACCGTCTTCGATCTG
1 -TTCCCTACTGCTTAGGGAGATAAGGCTGCACCGTCTTCAACCTG
*
18994520 CTCCACTACTGCTTAGGGAGATAAG
1 TTCC-CTACTGCTTAGGGAGATAAG
18994545 ATCTGTAATT
Statistics
Matches: 122, Mismatches: 25, Indels: 23
0.72 0.15 0.14
Matches are distributed among these distances:
41 2 0.02
43 27 0.22
44 54 0.44
45 2 0.02
46 9 0.07
47 27 0.22
48 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (44 bp):
TTCCCTACTGCTTAGGGAGATAAGGCTGCACCGTCTTCAACCTG
Found at i:18994472 original size:46 final size:47
Alignment explanation
Indices: 18994412--18994501 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
18994402 GGAGATAAGA
18994412 TCTGTAATTTTCAACCCG-TTCCCTACTGCTTAGAGAGATAAGGTGG
1 TCTGTAATTTTCAACCCGTTTCCCTACTGCTTAGAGAGATAAGGTGG
* * * *
18994458 TCTGTCATTTTCAACCTGTTTCCCTACTGCTTAGGGGGATAAGG
1 TCTGTAATTTTCAACCCGTTTCCCTACTGCTTAGAGAGATAAGG
18994502 CTCACCGTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 16 0.41
47 23 0.59
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (47 bp):
TCTGTAATTTTCAACCCGTTTCCCTACTGCTTAGAGAGATAAGGTGG
Found at i:18994573 original size:44 final size:43
Alignment explanation
Indices: 18994391--18994578 Score: 164
Period size: 44 Copynumber: 4.2 Consensus size: 43
18994381 ATCCGCTCCA
* *
18994391 CTACTGTTTAGGGAGATAAGATCTGTAATTTTCAACCCGTTCC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTCC
* * *
18994434 CTACTGCTTAGAGAGATAAGGTGGTCTGTCATTTTCAACCTGTTTCC
1 CTACTGCTTAGGGAGATAA---GATCTGTAATTTTCAACCTG-TTCC
* * * * * * * *
18994481 CTACTGCTTAGGGGGATAAG-GCT-CACCGTCTTCGATCTGCTCC
1 CTACTGCTTAGGGAGATAAGATCTGTA--ATTTTCAACCTGTTCC
*
18994524 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTG-TTCC
18994569 CTACTGCTTA
1 CTACTGCTTA
18994579 TGGGGTTATT
Statistics
Matches: 111, Mismatches: 24, Indels: 19
0.72 0.16 0.12
Matches are distributed among these distances:
43 22 0.20
44 45 0.41
45 5 0.05
46 18 0.16
47 21 0.19
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTGTTCC
Found at i:18994706 original size:87 final size:88
Alignment explanation
Indices: 18994458--18994900 Score: 640
Period size: 88 Copynumber: 5.1 Consensus size: 88
18994448 GATAAGGTGG
* * * * **
18994458 TCTGTCATTTTCAACCTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTC
1 TCTGTAATTTTCAGCCTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
*
18994523 CACTACTGCTTAGGGAGATAAGA
66 CACTACTGTTTAGGGAGATAAGA
* * ** *
18994546 TCTGTAATTTTCAGCCTGTTTCCCTACTGCTTATGGGGTTATTGCTCACCGTCTTCGATCCGCTC
1 TCTGTAATTTTCAGCCTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
**
18994611 CACTACTGTTTAGGGAGATCGGA
66 CACTACTGTTTAGGGAGATAAGA
*
18994634 TCTGTAATTTTTAGCCTGTTTTCCT-CTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
1 TCTGTAATTTTCAGCCTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
18994698 CACTACTGTTTAGGGAGATAAGA
66 CACTACTGTTTAGGGAGATAAGA
* *
18994721 TCTGTAATTTCCAGCCTG-TTTCCTACTGCTTAGGGGGTTAAGACTCACCGTCTT-GATCCACTC
1 TCTGTAATTTTCAGCCTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
18994784 CACTACTGTTTAGGGAGATAAGA
66 CACTACTGTTTAGGGAGATAAGA
* * * * * *
18994807 TTTGTAATTTCCAGCCTGTTTTCCTATTACTTAGGGGGTTAAGGCTCACTGTCTTCGACCCACTC
1 TCTGTAATTTTCAGCCTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
**
18994872 CACTACTACTTAGGGAGATAAGA
66 CACTACTGTTTAGGGAGATAAGA
18994895 TCTGTA
1 TCTGTA
18994901 CAATCAATTT
Statistics
Matches: 322, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
86 55 0.17
87 132 0.41
88 135 0.42
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (88 bp):
TCTGTAATTTTCAGCCTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTC
CACTACTGTTTAGGGAGATAAGA
Found at i:18994790 original size:43 final size:43
Alignment explanation
Indices: 18994659--18994798 Score: 103
Period size: 43 Copynumber: 3.2 Consensus size: 43
18994649 CTGTTTTCCT
*
18994659 CTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTA
1 CTGCTTAGGGGGTTAAGACTCACCGTCTT-GATCCACTCCACTA
* * * * * *
18994703 CTGTTTAGGGAGATAAGA-T--CTGTAATT--TCCAGCCTGTTTC-CTA
1 CTGCTTAGGGGGTTAAGACTCACCGT-CTTGATCCA--C---TCCACTA
18994746 CTGCTTAGGGGGTTAAGACTCACCGTCTTGATCCACTCCACTA
1 CTGCTTAGGGGGTTAAGACTCACCGTCTTGATCCACTCCACTA
*
18994789 CTGTTTAGGG
1 CTGCTTAGGG
18994799 AGATAAGATT
Statistics
Matches: 70, Mismatches: 14, Indels: 25
0.64 0.13 0.23
Matches are distributed among these distances:
39 4 0.06
41 4 0.06
42 4 0.06
43 31 0.44
44 17 0.24
45 3 0.04
46 3 0.04
47 4 0.06
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (43 bp):
CTGCTTAGGGGGTTAAGACTCACCGTCTTGATCCACTCCACTA
Found at i:19000822 original size:88 final size:88
Alignment explanation
Indices: 19000667--19001196 Score: 731
Period size: 88 Copynumber: 6.0 Consensus size: 88
19000657 AAATCGATTC
* * * *
19000667 TACAGATCTTATCTCCTTAAGCAGTAGTGGAGTGGATCGAAGACAGTGAGCCTTAACCCCCTGAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
19000732 CAGTAGGGAAACAGGCT-GAAGAT
66 CAGTAGGGAAACAGGCTGGAA-AT
* *
19000755 TACAGATCTTATCTCCCTAAATAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
*
19000820 CAGTA-GGAACACAAGCTGGAAAT
66 CAGTAGGGAA-ACAGGCTGGAAAT
* * * *
19000843 TACAGATCCTATCTCCCTAAACAGTAGTGTAGTGGATAGAAGACGGTAAGCCTTAACCCCCCCTA
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAA--CCCCCTA
* *
19000908 AACAGTAGGGAAACAGGCTGAAAAT
64 AGCAGTAGGGAAACAGGCTGGAAAT
* * *
19000933 TACAGATCTGATCTCCCTAAACAGTAGTGGAGTGGATCGAAGAAGGTGAGTCTTAACCCCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
19000998 CAGTAGGGAAACAGGCTGGAAAT
66 CAGTAGGGAAACAGGCTGGAAAT
* * * * * *
19001021 TACAAATCTTATTTCCCTAAACAGTAGTGGAGTGGATCAAAAATGGTGAGCCTTAACCGCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
19001086 CAGTAGGGAAACAGGCTGGAAAT
66 CAGTAGGGAAACAGGCTGGAAAT
* * * * ** *
19001109 TACAGATCTTATTTCCTTAAGCAATAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
* *
19001174 CAGTAGGGAAACATGCTGAAAAT
66 CAGTAGGGAAACAGGCTGGAAAT
19001197 GATAGACCAC
Statistics
Matches: 391, Mismatches: 46, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
87 4 0.01
88 308 0.79
89 3 0.01
90 72 0.18
91 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (88 bp):
TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
CAGTAGGGAAACAGGCTGGAAAT
Found at i:19001153 original size:266 final size:264
Alignment explanation
Indices: 19000667--19001196 Score: 753
Period size: 266 Copynumber: 2.0 Consensus size: 264
19000657 AAATCGATTC
* * * *
19000667 TACAGATCTTATCTCCTTAAGCAGTAGTGGAGTGGATCGAAGACAGTGAGCCTTAACCCCCTGAG
1 TACAGATCTGATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACAGTGAGCCTTAACCCCCTAAG
* * * *
19000732 CAGTAGGGAAACAGGCTGAAGATTACAGATCTTATCTCCCTAAATAGTAGTGGAGTGGATCGAAG
66 CAGTAGGGAAACAGGCTGAAGATTACAAATCTTATCTCCCTAAACAGTAGTGGAGTGGATCAAAA
19000797 ACGGTGAGCCTTAACCCCTTAAGCAGTAGGAACACAAGCTGGAAATTACAGATCCTATCTCCCTA
131 ACGGTGAGCCTTAACCCCTTAAGCAGTAGGAACACAAGCTGGAAATTACAGATCCTATCTCCCTA
* * **
19000862 AACAGTAGTGTAGTGGATAGAAGACGGTAAGCCTTAACCCCCCCTAAACAGTAGGGAAACAGGCT
196 AACAATAGTGGAGCAGATAGAAGACGGTAAGCCTT-A-CCCCCCTAAACAGTAGGGAAACAGGCT
19000927 GAAAAT
259 GAAAAT
*
19000933 TACAGATCTGATCTCCCTAAACAGTAGTGGAGTGGATCGAAGA-AGGTGAGTCTTAACCCCCTAA
1 TACAGATCTGATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACA-GTGAGCCTTAACCCCCTAA
*
19000997 GCAGTAGGGAAACAGGCTGGAA-ATTACAAATCTTATTTCCCTAAACAGTAGTGGAGTGGATCAA
65 GCAGTAGGGAAACAGGCT-GAAGATTACAAATCTTATCTCCCTAAACAGTAGTGGAGTGGATCAA
* * * *
19001061 AAATGGTGAGCCTTAACCGCC-TAAGCAGTAGGGAA-ACAGGCTGGAAATTACAGATCTTATTTC
129 AAACGGTGAGCCTTAACC-CCTTAAGCAGTA-GGAACACAAGCTGGAAATTACAGATCCTATCTC
* * * * * * *
19001124 CTTAAGCAATAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACATG
192 CCTAAACAATAGTGGAGCAGATAGAAGACGGTAAGCCTTACCCCCCTAAACAGTAGGGAAACAGG
19001189 CTGAAAAT
257 CTGAAAAT
19001197 GATAGACCAC
Statistics
Matches: 235, Mismatches: 25, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
264 30 0.13
265 2 0.01
266 194 0.83
267 9 0.04
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (264 bp):
TACAGATCTGATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACAGTGAGCCTTAACCCCCTAAG
CAGTAGGGAAACAGGCTGAAGATTACAAATCTTATCTCCCTAAACAGTAGTGGAGTGGATCAAAA
ACGGTGAGCCTTAACCCCTTAAGCAGTAGGAACACAAGCTGGAAATTACAGATCCTATCTCCCTA
AACAATAGTGGAGCAGATAGAAGACGGTAAGCCTTACCCCCCTAAACAGTAGGGAAACAGGCTGA
AAAT
Found at i:19002940 original size:14 final size:15
Alignment explanation
Indices: 19002862--19002944 Score: 52
Period size: 14 Copynumber: 5.9 Consensus size: 15
19002852 TATTGTTTTG
*
19002862 TATATTATTTACTT-
1 TATATTATTTATTTA
*
19002876 TATATTATTTATCT-
1 TATATTATTTATTTA
* *
19002890 TA-A--ATTCATTTG
1 TATATTATTTATTTA
* * * *
19002902 TATATTGTTAAATAA
1 TATATTATTTATTTA
19002917 TATATTATTTATTTA
1 TATATTATTTATTTA
19002932 TAT-TTATTTATTT
1 TATATTATTTATTT
19002945 TTTTAAAAAA
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
11 6 0.12
12 2 0.04
13 2 0.04
14 24 0.46
15 18 0.35
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (15 bp):
TATATTATTTATTTA
Found at i:19005418 original size:25 final size:24
Alignment explanation
Indices: 19005377--19005426 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
19005367 TAACAATGAT
* *
19005377 AAATTTTAATTAAAATATAATTTA
1 AAATATTAATTAAAATAAAATTTA
*
19005401 AAATATTATATTATAATAAAATTTA
1 AAATATTA-ATTAAAATAAAATTTA
19005426 A
1 A
19005427 CTTAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
AAATATTAATTAAAATAAAATTTA
Found at i:19008238 original size:114 final size:114
Alignment explanation
Indices: 19008038--19008265 Score: 456
Period size: 114 Copynumber: 2.0 Consensus size: 114
19008028 GACTTAATTG
19008038 AACGTTCTAAATCTTTCAAATAAGGACCTAATCATTTAAATGACAAAATGTAAGGGACCAGATTT
1 AACGTTCTAAATCTTTCAAATAAGGACCTAATCATTTAAATGACAAAATGTAAGGGACCAGATTT
19008103 AGAATTTTCAATTATTCATTTCTGCCAAATGCTTAAGGCATTTCACTCT
66 AGAATTTTCAATTATTCATTTCTGCCAAATGCTTAAGGCATTTCACTCT
19008152 AACGTTCTAAATCTTTCAAATAAGGACCTAATCATTTAAATGACAAAATGTAAGGGACCAGATTT
1 AACGTTCTAAATCTTTCAAATAAGGACCTAATCATTTAAATGACAAAATGTAAGGGACCAGATTT
19008217 AGAATTTTCAATTATTCATTTCTGCCAAATGCTTAAGGCATTTCACTCT
66 AGAATTTTCAATTATTCATTTCTGCCAAATGCTTAAGGCATTTCACTCT
19008266 GTAACACCCC
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (114 bp):
AACGTTCTAAATCTTTCAAATAAGGACCTAATCATTTAAATGACAAAATGTAAGGGACCAGATTT
AGAATTTTCAATTATTCATTTCTGCCAAATGCTTAAGGCATTTCACTCT
Found at i:19008747 original size:20 final size:20
Alignment explanation
Indices: 19008701--19008750 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
19008691 GCACATGCTC
* *
19008701 GTGTGGCCTGGGACACACCC
1 GTGTGGCCTGGAACACACCA
* **
19008721 GTATGGCCTGGAACATGCCA
1 GTGTGGCCTGGAACACACCA
19008741 GTGTGGCCTG
1 GTGTGGCCTG
19008751 CCCATGTGCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (20 bp):
GTGTGGCCTGGAACACACCA
Found at i:19009613 original size:54 final size:51
Alignment explanation
Indices: 19009544--19009683 Score: 172
Period size: 52 Copynumber: 2.7 Consensus size: 51
19009534 ACATAACATA
* * * **
19009544 CGATGTCATATCCCAGATATGGTCTTATACGGAATCATATTATCACATTCACAC
1 CGATGCCATAGCCCAGCTATGGTCTTATACGGAA-C-TAAAATCACATT-ACAC
* **
19009598 CGATGCCATAGCCCAGCTATGGTCTTATACGGGAACTAAAATCATATTGTAC
1 CGATGCCATAGCCCAGCTATGGTCTTATAC-GGAACTAAAATCACATTACAC
19009650 CGATGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CGATGCCATAGCCCAGCTATGGTCTTATACGGAA
19009684 ATACATATCA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
51 4 0.05
52 32 0.42
53 9 0.12
54 28 0.36
55 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (51 bp):
CGATGCCATAGCCCAGCTATGGTCTTATACGGAACTAAAATCACATTACAC
Found at i:19015206 original size:5 final size:5
Alignment explanation
Indices: 19015196--19015239 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
19015186 GTGTAATTAA
*
19015196 TTTTC TTTTC TTTTC TTTT- TTTGTC GTTTC TTTTC TTCTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTT-TC TTTTC TTTTC TT-TTC TTT
19015240 CTTCTTCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 3 0.09
5 24 0.71
6 7 0.21
ACGTcount: A:0.00, C:0.18, G:0.05, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:19015595 original size:21 final size:22
Alignment explanation
Indices: 19015560--19015602 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
19015550 GAACTAGGCG
*
19015560 TTAACTCGGAAAAAGTCTCAAA
1 TTAACTCGAAAAAAGTCTCAAA
19015582 TTAACTC-AAAAAAGTCTCAAA
1 TTAACTCGAAAAAAGTCTCAAA
19015603 AGCACAAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (22 bp):
TTAACTCGAAAAAAGTCTCAAA
Found at i:19016183 original size:29 final size:29
Alignment explanation
Indices: 19016137--19016192 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
19016127 ACACGGTCAA
19016137 GACACACACCCATATTCCAGACCGTGTGG
1 GACACACACCCATATTCCAGACCGTGTGG
* * * *
19016166 GACACACGCCCGTGTTCCAGATCGTGT
1 GACACACACCCATATTCCAGACCGTGT
19016193 AGCACACATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (29 bp):
GACACACACCCATATTCCAGACCGTGTGG
Found at i:19017413 original size:28 final size:29
Alignment explanation
Indices: 19017340--19017427 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
19017330 CGCATGGCTG
* * * *
19017340 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
19017367 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
19017396 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
19017424 CCAG
1 CCAG
19017428 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:19017580 original size:28 final size:28
Alignment explanation
Indices: 19017533--19017597 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
19017523 AAATTAACCC
*
19017533 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
19017561 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
19017589 TAGGGGTAT
1 TAGGGGTAT
19017598 CTAGTACATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:19025222 original size:29 final size:28
Alignment explanation
Indices: 19025189--19025280 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 28
19025179 GTGACAGAGT
19025189 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTTTGTGGCAGTGC
*
19025218 CACCAGAACAGATATATTTGTGGCAGGGC
1 CACCAGAACAGATAT-TTTGTGGCAGTGC
*
19025247 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATATTTTGTGGCAGT-GC
19025275 CACCAG
1 CACCAG
19025281 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
28 25 0.43
29 33 0.57
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.22
Consensus pattern (28 bp):
CACCAGAACAGATATTTTGTGGCAGTGC
Found at i:19025433 original size:28 final size:28
Alignment explanation
Indices: 19025386--19025453 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
19025376 AAATTAACCC
* *
19025386 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
19025414 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
* *
19025442 TAAGGATATAAT
1 TAGGGGTATAAT
19025454 AGTACATCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:19028621 original size:137 final size:137
Alignment explanation
Indices: 19028248--19028659 Score: 595
Period size: 137 Copynumber: 3.0 Consensus size: 137
19028238 GAAAAAAACG
* * * * *
19028248 AATTATTTTCTTTCCAAAAGAATAGTAATTTCCATGTCTTTTATATTTTGATTGAAATTAATTAT
1 AATTATATTCTTTCC-AAAGAATATTAATTTCCATGTCCTTTATATTTTGATCGAAATTAATTAA
*
19028313 TATAATTGTTTATATTAATAAATTC-GCTAAAATATAT--AATTAATATTTTGTATGAATTAAAT
65 TATAATTGTTTATATTAATAAATTCAG-TAAAATATATACAATTAATATTTTGTATGAATCAAAT
19028375 TCATATATT
129 TCATATATT
* * *
19028384 AATTATATTCTTTCC--AGAATATTAATTTCTATGTCCTTTATATTTTGACCAAAATTAATTAAT
1 AATTATATTCTTTCCAAAGAATATTAATTTCCATGTCCTTTATATTTTGATCGAAATTAATTAAT
* * * *
19028447 ATAACTGTTTTTATTAGTAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
66 ATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
19028512 ATATATT
131 ATATATT
* *
19028519 AATTATATTCTTTCCTAAAGGATATTAATTTCCAAT-T-GTTTATATTTTGATCGAAATTAATTA
1 AATTATATTCTTTCC-AAAGAATATTAATTTCC-ATGTCCTTTATATTTTGATCGAAATTAATTA
*
19028582 ATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATAAATCAAAT
64 ATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
19028647 TCATATATT
129 TCATATATT
19028656 AATT
1 AATT
19028660 TTATCTATAT
Statistics
Matches: 246, Mismatches: 23, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
133 71 0.29
134 1 0.00
135 48 0.20
136 14 0.06
137 96 0.39
138 14 0.06
139 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAGAATATTAATTTCCATGTCCTTTATATTTTGATCGAAATTAATTAAT
ATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
ATATATT
Found at i:19028653 original size:67 final size:67
Alignment explanation
Indices: 19028440--19028653 Score: 147
Period size: 67 Copynumber: 3.1 Consensus size: 67
19028430 GACCAAAATT
* * * * *
19028440 AATTAATATAACTGTTTTTATTAGTAAATTTAGTAAAATATATACAATTAATATTTTGTATGAAT
1 AATTAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATAAAT
19028505 CA
66 CA
* ** * * * *
19028507 AATTCATAT-ATTAATTATATT-CT---TTC-CTAAAGGATATTAATTTCCAATTGTTTATATTT
1 AATTAATATAATTGTTTATATTAATAAATTCAGTAAA--ATA-T-A--TACAA---TTAATATTT
*
19028566 TG-ATCGAAAT-T
57 TGTAT--AAATCA
19028577 AATTAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATAAAT
1 AATTAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATAAAT
19028642 CA
66 CA
*
19028644 AATTCATATA
1 AATTAATATA
19028654 TTAATTTTAT
Statistics
Matches: 107, Mismatches: 21, Indels: 38
0.64 0.13 0.23
Matches are distributed among these distances:
61 4 0.04
62 2 0.02
63 3 0.03
64 1 0.01
65 2 0.02
66 12 0.11
67 31 0.29
68 2 0.02
69 2 0.02
70 22 0.21
71 13 0.12
72 2 0.02
73 1 0.01
74 3 0.03
75 3 0.03
76 4 0.04
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (67 bp):
AATTAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATAAAT
CA
Found at i:19031403 original size:49 final size:50
Alignment explanation
Indices: 19031342--19031448 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 50
19031332 TCAATTTCAA
* * * *
19031342 TCCTTTTCATAATTTCATGGCGTAGTTCATTCT-ATA-ACATATCTTTCCTT
1 TCCTTTTTATAATTTCATGACATAGTTCATT-TGA-ACACATACCTTTCCTT
19031392 T-CTTTTTATAATTTCATGACATAGTTCATTTGAACACATACCTTTCCTT
1 TCCTTTTTATAATTTCATGACATAGTTCATTTGAACACATACCTTTCCTT
19031441 TCCTTTTT
1 TCCTTTTT
19031449 CATACCTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
48 2 0.04
49 41 0.82
50 7 0.14
ACGTcount: A:0.22, C:0.21, G:0.07, T:0.50
Consensus pattern (50 bp):
TCCTTTTTATAATTTCATGACATAGTTCATTTGAACACATACCTTTCCTT
Found at i:19031612 original size:42 final size:42
Alignment explanation
Indices: 19031566--19031652 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
19031556 ATACAAGTTA
* * *
19031566 ATGGTTGAAATGTAAGCTATACGATTCTGCTCACACAAGATG
1 ATGGTCGAAATGTAAGCTATACAATGCTGCTCACACAAGATG
* *
19031608 ATGGTCGAAATGTAAGTTATACAATGCTGCTCACACAAGTTG
1 ATGGTCGAAATGTAAGCTATACAATGCTGCTCACACAAGATG
19031650 ATG
1 ATG
19031653 AGTATCTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
ATGGTCGAAATGTAAGCTATACAATGCTGCTCACACAAGATG
Found at i:19032610 original size:33 final size:34
Alignment explanation
Indices: 19032568--19032634 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 34
19032558 AGTTTGTTTG
19032568 ATTGTGATGGTTATGCGAATTC-TTTAAATCTTT
1 ATTGTGATGGTTATGCGAATTCTTTTAAATCTTT
*
19032601 ATTGTGATGGTTATGTGAATTCTTTTAAATCTTT
1 ATTGTGATGGTTATGCGAATTCTTTTAAATCTTT
19032635 GTACGAAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 21 0.66
34 11 0.34
ACGTcount: A:0.24, C:0.07, G:0.18, T:0.51
Consensus pattern (34 bp):
ATTGTGATGGTTATGCGAATTCTTTTAAATCTTT
Found at i:19033176 original size:149 final size:149
Alignment explanation
Indices: 19032906--19033204 Score: 598
Period size: 149 Copynumber: 2.0 Consensus size: 149
19032896 TATCTTTAAA
19032906 TATAAAAACAAAGTATTTGAACTGTGATGAGTTGCAAATGCAAAATCAAACTTTCAATCTGGGAG
1 TATAAAAACAAAGTATTTGAACTGTGATGAGTTGCAAATGCAAAATCAAACTTTCAATCTGGGAG
19032971 ATTGTGATTCTATATTATTGTTCAAGGGATTCGAGCTATGGAATTTTGTTTTCCGTTATTATAAC
66 ATTGTGATTCTATATTATTGTTCAAGGGATTCGAGCTATGGAATTTTGTTTTCCGTTATTATAAC
19033036 TTTTGAATGCTTTGTGATT
131 TTTTGAATGCTTTGTGATT
19033055 TATAAAAACAAAGTATTTGAACTGTGATGAGTTGCAAATGCAAAATCAAACTTTCAATCTGGGAG
1 TATAAAAACAAAGTATTTGAACTGTGATGAGTTGCAAATGCAAAATCAAACTTTCAATCTGGGAG
19033120 ATTGTGATTCTATATTATTGTTCAAGGGATTCGAGCTATGGAATTTTGTTTTCCGTTATTATAAC
66 ATTGTGATTCTATATTATTGTTCAAGGGATTCGAGCTATGGAATTTTGTTTTCCGTTATTATAAC
19033185 TTTTGAATGCTTTGTGATT
131 TTTTGAATGCTTTGTGATT
19033204 T
1 T
19033205 TGCTTTGTTA
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 150 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (149 bp):
TATAAAAACAAAGTATTTGAACTGTGATGAGTTGCAAATGCAAAATCAAACTTTCAATCTGGGAG
ATTGTGATTCTATATTATTGTTCAAGGGATTCGAGCTATGGAATTTTGTTTTCCGTTATTATAAC
TTTTGAATGCTTTGTGATT
Found at i:19036319 original size:47 final size:47
Alignment explanation
Indices: 19036248--19036698 Score: 740
Period size: 47 Copynumber: 9.5 Consensus size: 47
19036238 CCCTTCGGGA
* * * * * *
19036248 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19036295 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19036342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* **
19036389 CTTATCACATATATACACTTTCACATTCATCATATCGGCTTTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19036436 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19036483 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19036532 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19036579 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19036628 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19036675 CTTATCACATATATACACTTTCAC
1 CTTATCACATATATACACTTTCAC
19036699 TACGAATCAA
Statistics
Matches: 381, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 288 0.76
49 93 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:19036536 original size:96 final size:94
Alignment explanation
Indices: 19036248--19036698 Score: 740
Period size: 96 Copynumber: 4.8 Consensus size: 94
19036238 CCCTTCGGGA
* * * * * * *
19036248 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
19036313 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
19036342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* **
19036407 TTTCACATTCATCATATCGGCTTTTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
19036436 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
19036501 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
19036532 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
19036597 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
19036628 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
19036693 TTTCAC
66 TTTCAC
19036699 TACGAATCAA
Statistics
Matches: 335, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 154 0.46
96 181 0.54
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:19036753 original size:143 final size:142
Alignment explanation
Indices: 19036303--19036734 Score: 545
Period size: 143 Copynumber: 3.0 Consensus size: 142
19036293 GCCCTATCAC
19036303 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
19036368 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC-ATATCGGC-TTT
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAATATC--CATTT
* ** *
19036431 TA-GGCCTT-ATCAC
129 TACAGAATTCA-CAA
*
19036444 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCAC
* * **
19036509 ATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
64 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA-AT-ATCCAT
*** *** *
19036574 TAGGCCTTA-TCACAT
127 TTTACAGAATTCACAA
19036589 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
* * *
19036654 TCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC-TACGAATCAAATTTCTCAT
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC--ATC-AATATC-CAT
19036718 TTTACAGAATTCA-AA
127 TTTACAGAATTCACAA
19036733 AT
1 AT
19036735 GTGTTGTATT
Statistics
Matches: 251, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
141 46 0.18
142 2 0.01
143 129 0.51
144 15 0.06
145 57 0.23
146 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (142 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAATATCCATTTTA
CAGAATTCACAA
Found at i:19041805 original size:46 final size:48
Alignment explanation
Indices: 19041604--19041919 Score: 268
Period size: 46 Copynumber: 6.7 Consensus size: 48
19041594 GTAAGGTGCT
*
19041604 GATGCCATGTCCCAGACATGGTCTTACGCTAGC-TATCATCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTA-CATC-TCGAGGCC
*
19041653 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA--CC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CG-AGGCC
* *
19041703 GATGCCATGTCCTAGACATGGTCTTACACT-GAC--ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCG-AGGCC
* * *
19041749 GATG-TATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCC
* * * *
19041795 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TTACATCTCGAGGCC
* * * *
19041841 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-CTCGAGGCC
* *
19041889 AATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
19041920 CCACAATAGC
Statistics
Matches: 225, Mismatches: 26, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.05
45 18 0.08
46 73 0.32
47 27 0.12
48 21 0.09
49 34 0.15
50 33 0.15
51 6 0.03
52 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCC
Found at i:19041865 original size:94 final size:96
Alignment explanation
Indices: 19041604--19041919 Score: 318
Period size: 94 Copynumber: 3.3 Consensus size: 96
19041594 GTAAGGTGCT
* *
19041604 GATGCCATGTCCCAGACATGGTCTTACGCTAGCTA-TCATCATCGAGGCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TC-ATGCCGATGCCATGTCCCAG
*
19041668 ACATGGTCTTACACTAGCTCTCACATATCCGTA--CC
63 ACATGGTCTTACACTGGCTCT-ACATAT-CG-AGGCC
* * * * *
19041703 GATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTCGTAGCTGATG-TATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAT-GCCGATGCCATGTCCCAGAC
* *
19041765 AT-GTCTTACACTGGCT-TACGTCTCGAGGCC
65 ATGGTCTTACACTGGCTCTACATATCGAGGCC
* *
19041795 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCAGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-ATGCCGATGCCATGTCCCAGAC
*
19041858 ATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
65 ATGGTCTTACACTGGCTCTACAT-ATCGAGGCC
* *
19041889 AATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
19041920 CCACAATAGC
Statistics
Matches: 184, Mismatches: 22, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
90 11 0.06
91 16 0.09
92 23 0.12
93 14 0.08
94 63 0.34
95 15 0.08
96 9 0.05
97 4 0.02
98 1 0.01
99 28 0.15
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTACATATCGAGGCC
Found at i:19041908 original size:140 final size:142
Alignment explanation
Indices: 19041609--19041919 Score: 355
Period size: 140 Copynumber: 2.2 Consensus size: 142
19041599 GTGCTGATGC
*
19041609 CATGTCCCAGACATGGTCTTACGCTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGG
* ** *
19041674 TCTTACACTAGCTCTCACATATCCGTACCGATGCCATGTCCTAGACATGGTCTTACACTGACACA
65 TCTTACACTAGCACT-ACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
**
19041739 TCTCGTAGCTGATG
129 TCTCGTAGCCAATG
* * *
19041753 TATGTCCCAGACATGTCTTACACTGGCT-TACGTC-TCGAGGCCGATG-CATGTCCCAGACAT-G
1 CATGTCCCAGACATGTCTTACACTAGCTAT-CATCATCGAGGCCGATGCCATGTCCCAGACATGG
* * * * * *
19041814 TCTTACACTAGCACT-CGTCTCAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTC-T
65 TCTTACACTAGCACTACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT
* *
19041877 CATAATGTGGCCAATG
130 C-T--CGTAGCCAATG
*
19041893 CATGTCCCAGACATGTTTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
19041920 CCACAATAGC
Statistics
Matches: 142, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
137 2 0.01
138 39 0.27
140 46 0.32
141 14 0.10
142 13 0.09
143 15 0.11
144 13 0.09
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (142 bp):
CATGTCCCAGACATGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGGT
CTTACACTAGCACTACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC
TCGTAGCCAATG
Found at i:19043031 original size:46 final size:45
Alignment explanation
Indices: 19042935--19043100 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
19042925 GTGCCAATGC
* * *
19042935 CATGTCCTAGACATGGTCTTACACTGAC--ACATCTCATAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCA-AGCCGATG
*
19042980 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTC-AAGCCGATG
* *
19043026 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAA-GCCGATG
* *
19043072 CCATGTCCTAGACAGGTCTTACACTGGCT
1 -CATGTCCCAGACATGTCTTACACTGGCT
19043101 CTCATAATGT
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
44 12 0.12
45 14 0.13
46 52 0.50
47 26 0.25
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGCCGATG
Found at i:19043091 original size:93 final size:92
Alignment explanation
Indices: 19042885--19043150 Score: 263
Period size: 93 Copynumber: 2.8 Consensus size: 92
19042875 AGGCTAATGC
* * * ** *
19042885 CATGTCCCAGACATGGTCTTATACTAGCTCTCACATATCCGTGCCAATGCCATGTCCTAGACATG
1 CATGTCCCAGACA-GGTCTTACACTGGCTCTCATA-ATGAG-GCCAATG-CATGTCCCAGACAT-
19042950 GTCTTACACT-G-ACACATCTCATAGCCGATG
61 GTCTTACACTAGCACACATCTCATAGCCGATG
* * * *
19042980 CATGTCCCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTGGCTCT-CATAAT-GAGGCCAATGCATGTCCCAGACATGTC
* *
19043043 TTACACTAGCACTCGTCTCA-ATGCCGATG
64 TTACACTAGCACACATCTCATA-GCCGATG
* * * *
19043072 CCATGTCCTAGACAGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCCAAACATGTCG
1 -CATGTCCCAGACAGGTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCCAGACATGTCT
*
19043137 TACACTAGCCCACA
65 TACACTAGCACACA
19043151 ATAGCCCATA
Statistics
Matches: 140, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
90 10 0.07
91 15 0.11
92 22 0.16
93 65 0.46
94 15 0.11
95 13 0.09
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (92 bp):
CATGTCCCAGACAGGTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCCAGACATGTCTT
ACACTAGCACACATCTCATAGCCGATG
Found at i:19050474 original size:46 final size:48
Alignment explanation
Indices: 19050273--19050588 Score: 268
Period size: 46 Copynumber: 6.7 Consensus size: 48
19050263 GTAAGGTGCT
*
19050273 GATGCCATGTCCCAGACATGGTCTTACGCTAGC-TATCATCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTA-CATC-TCGAGGCC
*
19050322 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA--CC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CG-AGGCC
* *
19050372 GATGCCATGTCCTAGACATGGTCTTACACT-GAC--ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCG-AGGCC
* * *
19050418 GATG-TATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCC
* * * *
19050464 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TTACATCTCGAGGCC
* * * *
19050510 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-CTCGAGGCC
* *
19050558 AATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
19050589 CCACAATAGC
Statistics
Matches: 225, Mismatches: 26, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.05
45 18 0.08
46 73 0.32
47 27 0.12
48 21 0.09
49 34 0.15
50 33 0.15
51 6 0.03
52 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCC
Found at i:19050534 original size:94 final size:96
Alignment explanation
Indices: 19050273--19050588 Score: 318
Period size: 94 Copynumber: 3.3 Consensus size: 96
19050263 GTAAGGTGCT
* *
19050273 GATGCCATGTCCCAGACATGGTCTTACGCTAGCTA-TCATCATCGAGGCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TC-ATGCCGATGCCATGTCCCAG
*
19050337 ACATGGTCTTACACTAGCTCTCACATATCCGTA--CC
63 ACATGGTCTTACACTGGCTCT-ACATAT-CG-AGGCC
* * * * *
19050372 GATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTCGTAGCTGATG-TATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAT-GCCGATGCCATGTCCCAGAC
* *
19050434 AT-GTCTTACACTGGCT-TACGTCTCGAGGCC
65 ATGGTCTTACACTGGCTCTACATATCGAGGCC
* *
19050464 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCAGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-ATGCCGATGCCATGTCCCAGAC
*
19050527 ATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
65 ATGGTCTTACACTGGCTCTACAT-ATCGAGGCC
* *
19050558 AATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
19050589 CCACAATAGC
Statistics
Matches: 184, Mismatches: 22, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
90 11 0.06
91 16 0.09
92 23 0.12
93 14 0.08
94 63 0.34
95 15 0.08
96 9 0.05
97 4 0.02
98 1 0.01
99 28 0.15
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTACATATCGAGGCC
Found at i:19050577 original size:140 final size:142
Alignment explanation
Indices: 19050278--19050588 Score: 355
Period size: 140 Copynumber: 2.2 Consensus size: 142
19050268 GTGCTGATGC
*
19050278 CATGTCCCAGACATGGTCTTACGCTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGG
* ** *
19050343 TCTTACACTAGCTCTCACATATCCGTACCGATGCCATGTCCTAGACATGGTCTTACACTGACACA
65 TCTTACACTAGCACT-ACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
**
19050408 TCTCGTAGCTGATG
129 TCTCGTAGCCAATG
* * *
19050422 TATGTCCCAGACATGTCTTACACTGGCT-TACGTC-TCGAGGCCGATG-CATGTCCCAGACAT-G
1 CATGTCCCAGACATGTCTTACACTAGCTAT-CATCATCGAGGCCGATGCCATGTCCCAGACATGG
* * * * * *
19050483 TCTTACACTAGCACT-CGTCTCAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTC-T
65 TCTTACACTAGCACTACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT
* *
19050546 CATAATGTGGCCAATG
130 C-T--CGTAGCCAATG
*
19050562 CATGTCCCAGACATGTTTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
19050589 CCACAATAGC
Statistics
Matches: 142, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
137 2 0.01
138 39 0.27
140 46 0.32
141 14 0.10
142 13 0.09
143 15 0.11
144 13 0.09
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (142 bp):
CATGTCCCAGACATGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGGT
CTTACACTAGCACTACATATCAATACCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC
TCGTAGCCAATG
Found at i:19057343 original size:20 final size:21
Alignment explanation
Indices: 19057300--19057345 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
19057290 ACTGTTTTGT
19057300 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
19057320 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
19057339 TATGGGC
1 TATGGGC
19057346 AAGACCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:19062666 original size:40 final size:40
Alignment explanation
Indices: 19062530--19062707 Score: 224
Period size: 40 Copynumber: 4.5 Consensus size: 40
19062520 CTCGAATGAT
*
19062530 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTAA
*
19062570 ATCC-GGCTAAGT-CCGAAGGCTTTTGTGCTAGCGACT-A
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
19062607 ATCC-GGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTAA
* * * *
19062646 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
* *
19062686 ATCCGGGTTAAGACCCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC
19062708 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
37 11 0.09
38 39 0.31
39 22 0.18
40 53 0.42
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
Found at i:19062740 original size:116 final size:116
Alignment explanation
Indices: 19062530--19062741 Score: 270
Period size: 116 Copynumber: 1.8 Consensus size: 116
19062520 CTCGAATGAT
* * * *
19062530 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGACTATATCCGGCTAAGTCCGAAGGCTTTTG
1 ATCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGCGACCATATCCGGCTAAGCCCGAAGGCTCTTG
* *
19062595 TGCTAGCGACTAATCCGGCTAAGATCCGAAGGCATTTGTGCTAGCGACTAA
66 TGCGAGCGACTAATCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTAA
* *
19062646 ATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGTTAAGACCCGAAGGC-C
1 ATCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGCGACCATATCC-GGCTAAG-CCCGAAGGCTC
* *
19062709 TTGTGCGAG-TAGTATATCCGGCTAA-ACCCGAAG
63 TTGTGCGAGCGACTA-ATCCGGCTAAGACCCGAAG
19062742 ATGCTTGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
116 43 0.52
117 31 0.38
118 8 0.10
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (116 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGCGACCATATCCGGCTAAGCCCGAAGGCTCTTG
TGCGAGCGACTAATCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTAA
Found at i:19070707 original size:40 final size:41
Alignment explanation
Indices: 19070572--19070757 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
19070562 TACTCGAATG
*
19070572 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
19070613 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
19070654 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
19070694 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
19070734 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
19070758 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:19070714 original size:81 final size:82
Alignment explanation
Indices: 19070574--19070727 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
19070564 CTCGAATGAT
* * *
19070574 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
19070639 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
19070656 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
19070719 TTTATGCTA
65 TTTATGCTA
19070728 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:19081395 original size:17 final size:18
Alignment explanation
Indices: 19081373--19081407 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
19081363 TTTTGGGCTT
19081373 TGTGGG-CCACACGGGCA
1 TGTGGGCCCACACGGGCA
*
19081390 TGTGGGCCCACATGGGCA
1 TGTGGGCCCACACGGGCA
19081408 AATGGCATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14
Consensus pattern (18 bp):
TGTGGGCCCACACGGGCA
Found at i:19089386 original size:16 final size:15
Alignment explanation
Indices: 19089361--19089391 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
19089351 CTAGATCGGC
19089361 AAAAGCCGAAAAGCT
1 AAAAGCCGAAAAGCT
19089376 AAAATGCCGAAAAGCT
1 AAAA-GCCGAAAAGCT
19089392 GACATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.52, C:0.19, G:0.19, T:0.10
Consensus pattern (15 bp):
AAAAGCCGAAAAGCT
Found at i:19089846 original size:27 final size:27
Alignment explanation
Indices: 19089806--19089915 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
19089796 AGGAAGCGTC
* *
19089806 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
**
19089833 CTGGTGGCTCTGCCACATACATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
19089860 CTGGTGGCTCT-CCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* **
19089886 CTGGTGACTCTATCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
19089912 CTGG
1 CTGG
19089916 CAGCAATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
26 35 0.48
27 38 0.52
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:19089889 original size:53 final size:53
Alignment explanation
Indices: 19089806--19089915 Score: 141
Period size: 53 Copynumber: 2.1 Consensus size: 53
19089796 AGGAAGCGTC
* * *
19089806 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTGCCACATACATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-CATCTGTT
* * * *
19089860 CTGGTGGCTCT-CCACAATTATCTGTTCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATCATCTGTT
19089912 CTGG
1 CTGG
19089916 CAGCAATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
52 11 0.22
53 28 0.57
54 10 0.20
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATCATCTGTT
Found at i:19097507 original size:49 final size:49
Alignment explanation
Indices: 19097426--19097519 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
19097416 TCTCCAGGCC
*
19097426 GTGTAACTCTCTATTTATGATGTCAGCGTCAATTTAAGTTCACACGGGT
1 GTGTAACTCTCTATTTATGATGTCAGCATCAATTTAAGTTCACACGGGT
* *
19097475 GTGTGACTCTCTATTTATGATGTTAGCATCAATTTAAGTTCACAC
1 GTGTAACTCTCTATTTATGATGTCAGCATCAATTTAAGTTCACAC
19097520 AACCAAGTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (49 bp):
GTGTAACTCTCTATTTATGATGTCAGCATCAATTTAAGTTCACACGGGT
Found at i:19101257 original size:49 final size:50
Alignment explanation
Indices: 19101057--19101275 Score: 244
Period size: 50 Copynumber: 4.4 Consensus size: 50
19101047 GCTCGTATCA
* * *
19101057 CTACTACGTGTACTAGATAGTTAGCTCGCATGTGTAGT-CTAAGTGCAGG
1 CTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGG
* * * * * * *
19101106 CTACTACGTGTACCCGACAACTTCGATCACGTGTATAGTACTAAGTGCAGG
1 CTACTACGTGTACCAGA-TAGTTAGGTCACATGTGTAGTACTAAGTGCAGG
* *
19101157 CTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAGG
1 CTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGG
* * * *
19101207 CTACTATGTGTACCAGATTGTT-GGTCGCATGTGTAGTACTAAGTGTAGG
1 CTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGG
* * *
19101256 CTACTATGCGTACTAGATAG
1 CTACTACGTGTACCAGATAG
19101276 CTTTAGTTAC
Statistics
Matches: 142, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 57 0.40
50 59 0.42
51 26 0.18
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
CTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGG
Found at i:19104049 original size:49 final size:49
Alignment explanation
Indices: 19103897--19104067 Score: 159
Period size: 48 Copynumber: 3.5 Consensus size: 49
19103887 TTATATCAAC
* * * ** *
19103897 GCCATATCCCAGGCATGGTTTTACA-TGAAATCACATA-CTGATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCA-CACATATCAGATGCCGAT
* * * *
19103945 GCCATATCCTAGATATGGTCTTACACTGGCACACATATCA-ACGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAGATGCCGAT
* * * * * *
19103993 GCCATGTCCCAAACATGGTCTTACATTGGCTCTCATCTCAGATGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAGATGCCGAT
*
19104042 GCCATGTCCCAGACATGGTCTCACAC
1 GCCATGTCCCAGACATGGTCTTACAC
19104068 GAGATCTCAT
Statistics
Matches: 99, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
48 66 0.67
49 33 0.33
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAGATGCCGAT
Found at i:19108736 original size:30 final size:29
Alignment explanation
Indices: 19108702--19108761 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 29
19108692 ATCGAAAGCA
*
19108702 TTGGCACTAAGTGTGTGATTTAAACTAGCT
1 TTGGCACTAAGTGTGCGATTT-AACTAGCT
19108732 TTGGCACTAAGTGTGCGATTTAACTAGCT
1 TTGGCACTAAGTGTGCGATTTAACTAGCT
19108761 T
1 T
19108762 CAGTTACTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAACTAGCT
Found at i:19112988 original size:15 final size:15
Alignment explanation
Indices: 19112968--19113015 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
19112958 TCAAAGATGG
19112968 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
19112983 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
19112997 GTTTATGGATATAAA
1 GTTTATGGATATGAA
19113012 GTTT
1 GTTT
19113016 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:19113002 original size:14 final size:14
Alignment explanation
Indices: 19112962--19113005 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
19112952 AAGGATTCAA
19112962 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
19112976 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
19112991 AGATGGGTTTATGG
1 AGATGGGTTTATGG
19113005 A
1 A
19113006 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:19113031 original size:29 final size:29
Alignment explanation
Indices: 19112962--19113021 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
19112952 AAGGATTCAA
*
19112962 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
19112991 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
19113020 AG
1 AG
19113022 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:19115820 original size:21 final size:21
Alignment explanation
Indices: 19115794--19115860 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
19115784 TTGGTATTTG
19115794 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
19115815 GGAATTGGTATGAAATAGTAT
1 GGAATTGGTACGAAATGGTAT
* *
19115836 GGTATTTGGTACGAATTGGTTAT
1 GG-AATTGGTACGAAATGG-TAT
19115859 GG
1 GG
19115861 TTCAAAGAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 21 0.55
22 12 0.32
23 5 0.13
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.34
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:19118918 original size:30 final size:30
Alignment explanation
Indices: 19118884--19118980 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
19118874 TAAACTAAAA
*
19118884 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
19118914 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
19118944 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
19118973 ATGAGCTA
1 -TGAGCTA
19118981 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:19121174 original size:12 final size:12
Alignment explanation
Indices: 19121159--19121190 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
19121149 TTCTTTTTGC
19121159 TTTTCAAAGGCT
1 TTTTCAAAGGCT
19121171 TTTTCAAAGGCT
1 TTTTCAAAGGCT
19121183 TTTTCAAA
1 TTTTCAAA
19121191 TTCTCTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:19121247 original size:5 final size:5
Alignment explanation
Indices: 19121237--19121299 Score: 58
Period size: 5 Copynumber: 12.0 Consensus size: 5
19121227 CTCTTGCCTC
*
19121237 TCTTT TCTTT T-TATT TCATTT TCTTTT TCTTC TCTTGT T-TTT TCTTTT
1 TCTTT TCTTT TCT-TT TC-TTT TC-TTT TCTTT TCTT-T TCTTT TC-TTT
19121285 TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT
19121300 GTTTTCTCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
4 3 0.06
5 30 0.61
6 15 0.31
7 1 0.02
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (5 bp):
TCTTT
Found at i:19121272 original size:11 final size:10
Alignment explanation
Indices: 19121256--19121310 Score: 51
Period size: 10 Copynumber: 5.3 Consensus size: 10
19121246 TTTATTTCAT
19121256 TTTCTTTTTC
1 TTTCTTTTTC
19121266 TTCTCTTGTTT-
1 TT-TCTT-TTTC
19121277 TTTCTTTTTC
1 TTTCTTTTTC
19121287 TTT-TCTTTTC
1 TTTCT-TTTTC
*
19121297 TTTGTTTTCTC
1 TTTCTTTT-TC
19121308 TTT
1 TTT
19121311 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
9 4 0.10
10 20 0.51
11 12 0.31
12 3 0.08
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:19121281 original size:37 final size:37
Alignment explanation
Indices: 19121239--19121309 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
19121229 CTTGCCTCTC
19121239 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGTT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGTT
*
19121276 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
19121310 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGTT
Found at i:19121301 original size:27 final size:27
Alignment explanation
Indices: 19121237--19121310 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
19121227 CTCTTGCCTC
* *
19121237 TCTTTTCTTT-TTATTTCATTTTCTTT
1 TCTTTTCTTTGTTTTTTCTTTTTCTTT
*
19121263 T-TCTTCTCTTGTTTTTTCTTTTTCTTT
1 TCTTTTCT-TTGTTTTTTCTTTTTCTTT
*
19121290 TCTTTTCTTTGTTTTCTCTTT
1 TCTTTTCTTTGTTTTTTCTTT
19121311 ACAAGAATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.12
26 3 0.08
27 27 0.68
28 5 0.12
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.77
Consensus pattern (27 bp):
TCTTTTCTTTGTTTTTTCTTTTTCTTT
Found at i:19121310 original size:16 final size:16
Alignment explanation
Indices: 19121235--19121295 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
19121225 GCCTCTTGCC
*
19121235 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
19121251 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
19121267 TCTCTTGT-TTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
19121283 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
19121296 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 8 0.22
16 23 0.62
17 6 0.16
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Done.