Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 85 of 295
Found at i:25036895 original size:12 final size:11
Alignment explanation
Indices: 25036880--25036957 Score: 61
Period size: 12 Copynumber: 7.0 Consensus size: 11
25036870 TCTAATACAT
25036880 TATTTTATCATA
1 TATTTTAT-ATA
*
25036892 TATTTTATCTA
1 TATTTTATATA
**
25036903 TAAATTATATTA
1 TATTTTATA-TA
* *
25036915 TATTATATATTT
1 TATTTTATA-TA
25036927 TATTTTATATA
1 TATTTTATATA
25036938 TATTTT-TATA
1 TATTTTATATA
*
25036948 CATTTT-TATA
1 TATTTTATATA
25036958 AAATTGTATT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
10 13 0.24
11 15 0.28
12 26 0.48
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTTTATATA
Found at i:25039335 original size:10 final size:10
Alignment explanation
Indices: 25039320--25039417 Score: 110
Period size: 10 Copynumber: 9.4 Consensus size: 10
25039310 TCCTCTTATC
25039320 CAAATTCTCT
1 CAAATTCTCT
25039330 CAAATTCTCT
1 CAAATTCTCT
25039340 CAAATTCT-T
1 CAAATTCTCT
25039349 CCAAAAATTCTCT
1 -C--AAATTCTCT
25039362 CAAATTCTCT
1 CAAATTCTCT
25039372 CAAATTCT-T
1 CAAATTCTCT
25039381 CCAAAAATTCTCT
1 -C--AAATTCTCT
*
25039394 CATATTCTCT
1 CAAATTCTCT
*
25039404 CAAATTTTCT
1 CAAATTCTCT
25039414 CAAA
1 CAAA
25039418 GCTCTCTTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
9 2 0.03
10 57 0.74
12 16 0.21
13 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:25039358 original size:32 final size:32
Alignment explanation
Indices: 25039321--25039417 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
25039311 CCTCTTATCC
25039321 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
25039353 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
*
25039385 AAATTCTCTCATATTCTCTCAAATT-TTCTCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTC-CAA
25039417 A
1 A
25039418 GCTCTCTTTA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 3 0.05
32 60 0.95
ACGTcount: A:0.34, C:0.27, G:0.00, T:0.39
Consensus pattern (32 bp):
AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
Found at i:25039660 original size:47 final size:48
Alignment explanation
Indices: 25039566--25039662 Score: 151
Period size: 47 Copynumber: 2.0 Consensus size: 48
25039556 AGTGATAATT
**
25039566 TTAATATTTCAATAGTATTTAATATTTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
* *
25039614 TTAATTTTTCAATACAATTTAATA-TTTTTTCATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
25039661 TT
1 TT
25039663 TTAATTTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 24 0.53
48 21 0.47
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (48 bp):
TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
Found at i:25039664 original size:6 final size:6
Alignment explanation
Indices: 25039653--25039677 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25039643 TCATTTATGC
25039653 AATTTT AATTTT AATTTT AATTTT A
1 AATTTT AATTTT AATTTT AATTTT A
25039678 TAAATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:25040625 original size:7 final size:7
Alignment explanation
Indices: 25040613--25040658 Score: 83
Period size: 7 Copynumber: 6.6 Consensus size: 7
25040603 AATTATCTCA
25040613 TATTTAG
1 TATTTAG
*
25040620 TATTTAA
1 TATTTAG
25040627 TATTTAG
1 TATTTAG
25040634 TATTTAG
1 TATTTAG
25040641 TATTTAG
1 TATTTAG
25040648 TATTTAG
1 TATTTAG
25040655 TATT
1 TATT
25040659 ATGTATACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:25041312 original size:18 final size:18
Alignment explanation
Indices: 25041271--25041305 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
25041261 GCCAGGTGCG
*
25041271 TATCCTAGCCCTTATATA
1 TATCCTAACCCTTATATA
25041289 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
25041306 GTTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:25041480 original size:22 final size:23
Alignment explanation
Indices: 25041455--25041499 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
25041445 CCATCGCCTT
*
25041455 ATGGG-ATTCAAACACCTCCGCC
1 ATGGGAATGCAAACACCTCCGCC
25041477 ATGGGTAATGCAAACACCTCCGC
1 ATGGG-AATGCAAACACCTCCGC
25041500 AGTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
24 15 0.75
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (23 bp):
ATGGGAATGCAAACACCTCCGCC
Found at i:25041772 original size:27 final size:27
Alignment explanation
Indices: 25041742--25041839 Score: 85
Period size: 26 Copynumber: 3.6 Consensus size: 27
25041732 TAAAAGTTTT
25041742 TTTTAATATTT-TAATTATAATTTAATC
1 TTTT-ATATTTGTAATTATAATTTAATC
* ** *
25041769 TTTTATATTTGTAA-TAAAATAAAAGTTGT
1 TTTTATATTTGTAATTATAATTTAA--T-C
*
25041798 TTTTAGTATTT-TAATTATAATTTACTC
1 TTTTA-TATTTGTAATTATAATTTAATC
25041825 TTTTATATTTGTAAT
1 TTTTATATTTGTAAT
25041840 AGAATAAAAG
Statistics
Matches: 55, Mismatches: 9, Indels: 14
0.71 0.12 0.18
Matches are distributed among these distances:
26 18 0.33
27 16 0.29
28 2 0.04
29 8 0.15
30 11 0.20
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (27 bp):
TTTTATATTTGTAATTATAATTTAATC
Found at i:25041785 original size:56 final size:56
Alignment explanation
Indices: 25041724--25041861 Score: 231
Period size: 56 Copynumber: 2.5 Consensus size: 56
25041714 TTCTTTCATT
*
25041724 TAATAAAATAAAAGTTTTTTTTAATATTTTAATTATAATTTAATCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTAATCTTTTATATTTG
* *
25041780 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTAATCTTTTATATTTG
* *
25041836 TAATAGAATAAAAGTTGTTTTGAATA
1 TAATAAAATAAAAGTTGTTTTTAATA
25041862 AGGAAATATT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (56 bp):
TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTAATCTTTTATATTTG
Found at i:25047857 original size:26 final size:26
Alignment explanation
Indices: 25047826--25047933 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
25047816 TGAAATGCCC
*
25047826 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAACCCATT
25047852 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
25047878 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
25047904 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
25047930 ATCA
1 ATCA
25047934 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:25048550 original size:26 final size:25
Alignment explanation
Indices: 25048488--25048551 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 25
25048478 AATTAATATT
25048488 TAATTTAATTAATTAATCTTACACCC
1 TAATTT-ATTAATTAATCTTACACCC
25048514 TAATTATATTAATTAATCTTACACCC
1 TAATT-TATTAATTAATCTTACACCC
25048540 TAATTTGATTAA
1 TAATTT-ATTAA
25048552 CTAAACCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
25 1 0.03
26 34 0.94
27 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (25 bp):
TAATTTATTAATTAATCTTACACCC
Found at i:25048597 original size:22 final size:22
Alignment explanation
Indices: 25048567--25048615 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
25048557 CCCTTACAAA
* *
25048567 AACCATAAACCCTAAAAACCAT
1 AACCTTAAACCATAAAAACCAT
*
25048589 AACCTTAAACCATAAAAACCCT
1 AACCTTAAACCATAAAAACCAT
25048611 AACCT
1 AACCT
25048616 ACCCTAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.16
Consensus pattern (22 bp):
AACCTTAAACCATAAAAACCAT
Found at i:25048625 original size:6 final size:6
Alignment explanation
Indices: 25048605--25048640 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
25048595 AAACCATAAA
25048605 AACCCT AA-CCT -ACCCT AACCCT AACCCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AA
25048641 AAAACCCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.04
5 6 0.21
6 21 0.75
ACGTcount: A:0.36, C:0.47, G:0.00, T:0.17
Consensus pattern (6 bp):
AACCCT
Found at i:25065601 original size:41 final size:41
Alignment explanation
Indices: 25065543--25065625 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
25065533 AAAATTAGTA
*
25065543 GCTTCAATCTGTTCCACTACAACTTT-AGAGAGATAAGGTTC
1 GCTTCAATCTGTTCCACTACAACTTTAAG-GAGATAAGATTC
* * *
25065584 GCTTTAATCTGTTCCACTGCAATTTTAAGGAGATAAGATTC
1 GCTTCAATCTGTTCCACTACAACTTTAAGGAGATAAGATTC
25065625 G
1 G
25065626 TAACTTCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (41 bp):
GCTTCAATCTGTTCCACTACAACTTTAAGGAGATAAGATTC
Found at i:25065715 original size:51 final size:48
Alignment explanation
Indices: 25065648--25066005 Score: 215
Period size: 51 Copynumber: 7.4 Consensus size: 48
25065638 GCTCTATTGC
*
25065648 AACTTCAGAGAGATAAGATCTGTAACTTGTCGCTTCAATCTGTTTCACTGT
1 AACTTCAGGGAGATAAGAT-TGTAAC-TGT-GCTTCAATCTGTTTCACTGT
* * * * * * *
25065699 AACTTTAGGGAAATAAGATTCG---CTAT-ATTCAATTTGCTCCACTGT
1 AACTTCAGGGAGATAAGATT-GTAACTGTGCTTCAATCTGTTTCACTGT
** *
25065744 AACTTTTGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTG-TTCTACTGT
1 AACTTCAGGGAGATAAGA-TTGTAAC-TGT-GCTTCAATCTGTTTC-ACTGT
* * * * *
25065795 AAATTTAGGGAGATAAGATTCG---CTGT-ATTCAATCTG-CTCAACTGC
1 AACTTCAGGGAGATAAGATT-GTAACTGTGCTTCAATCTGTTTC-ACTGT
* *
25065840 AACTTCAGGGAGATAAAATTTGTAACATGTAGCTTCAATCTGTTCCACTGT
1 AACTTCAGGGAGATAAGA-TTGTAAC-TGT-GCTTCAATCTGTTTCACTGT
* * * *
25065891 AACTTCAGGGA-ATAAGA-T-TAACTAT-ATTCAATCTGCTTCACTGC
1 AACTTCAGGGAGATAAGATTGTAACTGTGCTTCAATCTGTTTCACTGT
* * * * *
25065935 AACTTCAAGGAGATAAGATTTGTGACTTATAGCTTCAATCTGTTCCACTGC
1 AACTTCAGGGAGATAAGA-TTGTAAC-TGT-GCTTCAATCTGTTTCACTGT
25065986 AACTTCAAGGGA-ATAAGATT
1 AACTTC-AGGGAGATAAGATT
25066006 AGCTATATTC
Statistics
Matches: 240, Mismatches: 41, Indels: 53
0.72 0.12 0.16
Matches are distributed among these distances:
44 25 0.10
45 68 0.28
46 6 0.03
47 10 0.04
48 8 0.03
49 8 0.03
50 12 0.05
51 98 0.41
52 5 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (48 bp):
AACTTCAGGGAGATAAGATTGTAACTGTGCTTCAATCTGTTTCACTGT
Found at i:25065742 original size:45 final size:45
Alignment explanation
Indices: 25065501--25066096 Score: 303
Period size: 44 Copynumber: 12.9 Consensus size: 45
25065491 ATCTTGTCGT
* * * * * * **
25065501 TTCAATCTGCTCTATTGCAACTTCAAGGAGATAAAATTAG-TAGC
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * * *
25065545 TTCAATCTGTTCCACTACAACTTTAGAGAGATAAGGTTCGC--T-
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * *
25065587 TT-AATCTGTTCCACTGCAATTTTAAGGAGATAAGATTCG-TA-A
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * * * * *
25065629 CTTCAATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAACTTGTCGC
1 -TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT-T-T-GC-TAT--A
* * * * *
25065681 TTCAATCTGTTTCACTGTAACTTTAGGGAAATAAGATTCGCTATA
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * *
25065726 TTCAATTTGCTCCACTGTAACTTTTGGGAGATAAGATTTGTAACTTGTA
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG---C-TATA
* * * * * * *
25065775 GCTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCGCTGTA
1 --TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * *
25065822 TTCAATCTGCTCAACTGCAACTTCAGGGAGATAAAATTTGTAACATGTA
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG---C-TATA
* * * **
25065871 GCTTCAATCTGTTCCACTGTAACTTCAGGGA-ATAAGATTAACTATA
1 --TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * *
25065917 TTCAATCTGCTTCACTGCAACTTCAAGGAGATAAGATTTGTGACTTATA
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA-TT-TG-C-TATA
* * *
25065966 GCTTCAATCTGTTCCACTGCAACTTCAAGGGA-ATAAGATTAGCTATA
1 --TTCAATCTGCTCCACTGCAACTT-TAGGGAGATAAGATTTGCTATA
* * * ***
25066013 TTCAATCTCCTCTACTACAACTTTAGGGAGATAAGATTTG-TGGC
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
* * * *
25066057 TTTAATCAGTTCCACTGCAACTTTAGGGAGATAAAATTTG
1 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG
25066097 TCATGGTGAC
Statistics
Matches: 422, Mismatches: 95, Indels: 70
0.72 0.16 0.12
Matches are distributed among these distances:
41 32 0.08
42 2 0.00
43 2 0.00
44 121 0.29
45 101 0.24
46 5 0.01
47 11 0.03
48 6 0.01
49 13 0.03
50 10 0.02
51 115 0.27
52 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (45 bp):
TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATA
Found at i:25065768 original size:96 final size:96
Alignment explanation
Indices: 25065584--25066053 Score: 561
Period size: 96 Copynumber: 4.9 Consensus size: 96
25065574 GATAAGGTTC
* * * * * * *
25065584 GCTTTAATCTGTTCCACTGCAATTTTAAGGAGATAAGATTCG-TA-ACTTCAATCTGCTCTATTG
1 GCTTCAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATA-TTCAATCTGCTCCACTG
* * *
25065647 CAACTTCAGAGAGATAAGATCTGTAACTTGTC
65 CAACTTCAGGGAGATAAGATTTGTAACTTGTA
* * *
25065679 GCTTCAATCTGTTTCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATTTGCTCCACTGT
1 GCTTCAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGC
**
25065744 AACTTTTGGGAGATAAGATTTGTAACTTGTA
66 AACTTCAGGGAGATAAGATTTGTAACTTGTA
* * * * * *
25065775 GCTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCGCTGTATTCAATCTGCTCAACTGC
1 GCTTCAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGC
* *
25065840 AACTTCAGGGAGATAAAATTTGTAACATGTA
66 AACTTCAGGGAGATAAGATTTGTAACTTGTA
* ** *
25065871 GCTTCAATCTGTTCCACTGTAACTTCAGGG-AATAAGATTAACTATATTCAATCTGCTTCACTGC
1 GCTTCAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGC
* * *
25065935 AACTTCAAGGAGATAAGATTTGTGACTTATA
66 AACTTCAGGGAGATAAGATTTGTAACTTGTA
* * * * * *
25065966 GCTTCAATCTGTTCCACTGCAACTTCAAGGG-AATAAGATTAGCTATATTCAATCTCCTCTACTA
1 GCTTCAATCTGTTCCACTGTAACTT-TAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTG
*
25066030 CAACTTTAGGGAGATAAGATTTGT
65 CAACTTCAGGGAGATAAGATTTGT
25066054 GGCTTTAATC
Statistics
Matches: 320, Mismatches: 52, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
95 114 0.36
96 205 0.64
97 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (96 bp):
GCTTCAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGC
AACTTCAGGGAGATAAGATTTGTAACTTGTA
Found at i:25065949 original size:191 final size:191
Alignment explanation
Indices: 25065584--25066053 Score: 604
Period size: 191 Copynumber: 2.5 Consensus size: 191
25065574 GATAAGGTTC
* * * *
25065584 GCTTTAATCTGTTCCACTGCAATTTTAAGGAGATAAGATTCG-TAACTTCAATCTGCTCTATTGC
1 GCTTTAATCTGTTCCACTGCAAATTTAGGGAGATAAGATTCGCTTA-TTCAATCTGCTCTACTGC
* * * * * *
25065648 AACTTCAGAGAGATAAGATCTGTAACTTGTCGCTTCAATCTGTTTCACTGTAACTTTAGGGAAAT
65 AACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAAT
** * * *** *
25065713 AAGATTCGCTATATTCAATTTGCTCCACTGTAACTTTTGGGAGATAAGATTTGTAACTTGTA
130 AAGATTAACTATATTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTATA
* * *
25065775 GCTTTAATCTGTTCTACTGTAAATTTAGGGAGATAAGATTCGCTGTATTCAATCTGCTCAACTGC
1 GCTTTAATCTGTTCCACTGCAAATTTAGGGAGATAAGATTCGCT-TATTCAATCTGCTCTACTGC
*
25065840 AACTTCAGGGAGATAAAATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGG-AAT
65 AACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAAT
* *
25065904 AAGATTAACTATATTCAATCTGCTTCACTGCAACTTCAAGGAGATAAGATTTGTGACTTATA
130 AAGATTAACTATATTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTATA
* * * * * *
25065966 GCTTCAATCTGTTCCACTGCAACTTCAAGGGA-ATAAGATTAGCTATATTCAATCTCCTCTACTA
1 GCTTTAATCTGTTCCACTGCAAATT-TAGGGAGATAAGATTCGCT-TATTCAATCTGCTCTACTG
*
25066030 CAACTTTAGGGAGATAAGATTTGT
64 CAACTTCAGGGAGATAAGATTTGT
25066054 GGCTTTAATC
Statistics
Matches: 240, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
191 163 0.68
192 76 0.32
193 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (191 bp):
GCTTTAATCTGTTCCACTGCAAATTTAGGGAGATAAGATTCGCTTATTCAATCTGCTCTACTGCA
ACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATA
AGATTAACTATATTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTATA
Found at i:25069044 original size:33 final size:33
Alignment explanation
Indices: 25069002--25069066 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
25068992 GTACTGTCTC
25069002 AATCTTCGGGTTATTCAGATTAAGGTACAACAT
1 AATCTTCGGGTTATTCAGATTAAGGTACAACAT
* *
25069035 AATCTTCGGGTTGTTTAGATTAAGGTACAACA
1 AATCTTCGGGTTATTCAGATTAAGGTACAACA
25069067 CAACTTCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (33 bp):
AATCTTCGGGTTATTCAGATTAAGGTACAACAT
Found at i:25079563 original size:7 final size:7
Alignment explanation
Indices: 25079553--25079597 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
25079543 GTACATTATA
*
25079553 TATTATT
1 TATTGTT
*
25079560 TATTAT-
1 TATTGTT
25079566 TATTGTT
1 TATTGTT
25079573 TATTGTT
1 TATTGTT
25079580 TATTGTT
1 TATTGTT
25079587 TATTGTT
1 TATTGTT
25079594 TATT
1 TATT
25079598 TTATAATGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
6 5 0.14
7 31 0.86
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (7 bp):
TATTGTT
Found at i:25080657 original size:13 final size:12
Alignment explanation
Indices: 25080635--25080684 Score: 57
Period size: 13 Copynumber: 4.1 Consensus size: 12
25080625 TTCATATTTC
*
25080635 TATACAAAAATCT
1 TATA-AAAAATAT
25080648 TATAATAAAATAT
1 TATAA-AAAATAT
25080661 TATAAAAAATAT
1 TATAAAAAATAT
*
25080673 TA-ATAAAATAT
1 TATAAAAAATAT
25080684 T
1 T
25080685 TTAACCAGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 9 0.26
12 10 0.29
13 15 0.44
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (12 bp):
TATAAAAAATAT
Found at i:25080680 original size:11 final size:11
Alignment explanation
Indices: 25080650--25080684 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
25080640 AAAAATCTTA
25080650 TAATAAAATAT
1 TAATAAAATAT
*
25080661 TATAAAAAATAT
1 TA-ATAAAATAT
25080673 TAATAAAATAT
1 TAATAAAATAT
25080684 T
1 T
25080685 TTAACCAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:25081614 original size:21 final size:21
Alignment explanation
Indices: 25081566--25081624 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
25081556 TCGATGATTA
* *
25081566 AGTAT-TACTATATAATGTAAT
1 AGTATATATTATATTAT-TAAT
25081587 AGT-TATATTATATTATTAAT
1 AGTATATATTATATTATTAAT
*
25081607 AGTATATATTTTATTATT
1 AGTATATATTATATTATT
25081625 TTATGGAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 8 0.24
21 25 0.76
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.53
Consensus pattern (21 bp):
AGTATATATTATATTATTAAT
Found at i:25081683 original size:24 final size:24
Alignment explanation
Indices: 25081650--25081710 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
25081640 ATACTAATTT
25081650 AGTATATTGGTTTAAGGTAAAATAA
1 AGTA-ATTGGTTTAAGGTAAAATAA
*
25081675 AGTAATTGGTCTAAGGTAAAATAA
1 AGTAATTGGTTTAAGGTAAAATAA
*
25081699 AGTAATCGGTTT
1 AGTAATTGGTTT
25081711 CAATTTTGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (24 bp):
AGTAATTGGTTTAAGGTAAAATAA
Found at i:25089015 original size:42 final size:42
Alignment explanation
Indices: 25088956--25089042 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
25088946 TGTAAAGATA
* *
25088956 CTTGGGTTTTGGGAGTGGAGTCTTTGGATGTGGAGGATGAGG
1 CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGG
*
25088998 CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGGGGATGAGG
1 CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGG
25089040 CTT
1 CTT
25089043 AGGATAAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.14, C:0.06, G:0.47, T:0.33
Consensus pattern (42 bp):
CTTGGGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGG
Found at i:25089178 original size:96 final size:96
Alignment explanation
Indices: 25089076--25089600 Score: 462
Period size: 96 Copynumber: 5.4 Consensus size: 96
25089066 TGGGATGTGA
* * * * * * *
25089076 TGGTGGTGGAGGGGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGATT
1 TGGTGGTGGAGGAGACTTGTAGACATAAGGAGGAGGTGGTGAGTGAACTGGTGGTGGTGGAGACT
* * * *
25089141 TATGGACATATGGAGGAGGTGGGGAGTGGAT
66 TGTAGATATATGGAGGAGGTGGGGAGTGGAC
* * * *
25089172 TGGTGGTGGTGGAGACTTGT-GAATATAAGGAGG-GGATGGTGAATGAATTGGTGGTGGTGGAGA
1 TGGTGGTGGAGGAGACTTGTAG-ACATAAGGAGGAGG-TGGTGAGTGAACTGGTGGTGGTGGAGA
25089235 CTTGTAGATATATGGTA-GAGGTGGGGAGTGGAC
64 CTTGTAGATATATGG-AGGAGGTGGGGAGTGGAC
* * * * *
25089268 TGGTGGTGGTGGAGACTTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACT
1 TGGTGGTGGAGGAGACTTGTAGACATAAGGAGGAGGTGGTGAGTGAACTGGTGGTGGTGGAGACT
* * * * * *
25089333 TGTAAATGTAAGGAGGGGGTGGTGAATGGAC
66 TGTAGATATATGGAGGAGGTGGGGAGTGGAC
* * ** * * * *
25089364 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACT
1 TGGTGGTGGAGGAGACTTGTAGACATAAGGAGGAGGTGGTGAGTGAACTGGTGGTGGTGGAGACT
* * * * *
25089429 TATAGATGTATGGTGGAGGTGGTGAATGGAC
66 TGTAGATATATGGAGGAGGTGGGGAGTGGAC
* * * * ** * * * * *
25089460 AGGTGGTGGAGGGGACTTATATATGTAAGGAGGTGATGGTGACTTGTGAATATAAGGAGGGGGTG
1 TGGTGGTGGAGGAGACTTGTAGACATAAGGAGGAGGTGGTGA---GTGAA-CT--GGTGGTGGTG
* *
25089525 GAGATTTGTAGACATATGGAGGAGGTGGGGAGTGGAC
60 GAGACTTGTAGATATATGGAGGAGGTGGGGAGTGGAC
* *
25089562 TGGTGGTGGAGGGGACTTGTAGACATATGGAGGAGGTGG
1 TGGTGGTGGAGGAGACTTGTAGACATAAGGAGGAGGTGG
25089601 AGACTTGTAA
Statistics
Matches: 347, Mismatches: 70, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
95 4 0.01
96 267 0.77
97 4 0.01
99 3 0.01
100 1 0.00
102 68 0.20
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.25
Consensus pattern (96 bp):
TGGTGGTGGAGGAGACTTGTAGACATAAGGAGGAGGTGGTGAGTGAACTGGTGGTGGTGGAGACT
TGTAGATATATGGAGGAGGTGGGGAGTGGAC
Found at i:25089204 original size:48 final size:48
Alignment explanation
Indices: 25089076--25089600 Score: 327
Period size: 48 Copynumber: 10.8 Consensus size: 48
25089066 TGGGATGTGA
* * * * * * *
25089076 TGGTGGTGGAGGGGACTTGT-AGACATAAGGTGCAGGTGGGGAGCGAAC
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGGAGGTGGGGAGTGGAC
* * * * * * *
25089124 TGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGAT
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
* * * *
25089172 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGG-GGATGGTGAATGAAT
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGG-TGGGGAGTGGAC
*
25089220 TGGTGGTGGTGGAGACTTGT-AGATATATGGTA-GAGGTGGGGAGTGGAC
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGG-AGGAGGTGGGGAGTGGAC
* *
25089268 TGGTGGTGGTGGAGACTTGTAGACATAT--GGAGGAGGAGGAGAGTGGAC
1 TGGTGGTGGTGGAGACTTGT-GA-ATATAAGGAGGAGGTGGGGAGTGGAC
* * * * *
25089316 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGAC
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
* * * * *
25089364 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGAC
1 TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
* * * * * * *
25089412 TGGTGGTGGTGGGGACTTAT-AGATGTATGGTGGAGGTGGTGAATGGAC
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGGAGGTGGGGAGTGGAC
* * * * * * * * * *
25089460 AGGTGGTGGAGGGGACTTAT-ATATGTAAGGAGGTGATGGTGACTTGTGAATA
1 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGGAGGTGGGGA---GTGGA-C
* * *
25089512 TAAGGAGGGGGTGGAGATTTGTAGACATAT--GGAGGAGGTGGGGAGTGGAC
1 T--GGTGGTGGTGGAGACTTGT-GA-ATATAAGGAGGAGGTGGGGAGTGGAC
* *
25089562 TGGTGGTGGAGGGGACTTGTAGACATAT--GGAGGAGGTGG
1 TGGTGGTGGTGGAGACTTGT-GA-ATATAAGGAGGAGGTGG
25089601 AGACTTGTAA
Statistics
Matches: 389, Mismatches: 69, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
46 3 0.01
47 6 0.02
48 336 0.86
49 3 0.01
50 6 0.02
51 7 0.02
54 24 0.06
56 4 0.01
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.25
Consensus pattern (48 bp):
TGGTGGTGGTGGAGACTTGTGAATATAAGGAGGAGGTGGGGAGTGGAC
Found at i:25089257 original size:144 final size:144
Alignment explanation
Indices: 25089076--25089603 Score: 464
Period size: 144 Copynumber: 3.6 Consensus size: 144
25089066 TGGGATGTGA
* * *
25089076 TGGTGGTGGAGGGGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGATT
1 TGGTGGTGGTGGAGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGACT
* * * * *
25089141 TATGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGTGGTGGAGACTTGTGAATATAAGGAGGG
66 TATAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAAATATAAGGAGGG
*
25089206 GATGGTGAATGAAT
131 GATGGTGAATGAAC
* * * * *
25089220 TGGTGGTGGTGGAGACTTGTAGATATATGGTAG-AGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
1 TGGTGGTGGTGGAGACTTGTAGACATAAGGT-GCAGGTGGGGAGCGAACTGGTGGGGGTGGAGAC
* *
25089284 TTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAAATGTAAGGAGG
65 TTATAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAAATATAAGGAGG
* *
25089349 GGGTGGTGAATGGAC
130 GGATGGTGAATGAAC
* ** * ** * ** * * *
25089364 TGGTGGTGGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACT
1 TGGTGGTGGTGGAGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGACT
** * * * * * * * * * * *
25089429 TATAGATGTATGGTGGAGGTGGTGAATGGACAGGTGGTGGAGGGGACTTATATATGTAAGGAGGT
66 TATAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAAATATAAGGAGGG
* *
25089494 GATGGTGACTTGTGAATA
131 GATGGTGA---ATGAA-C
* * * * * * * * * * *
25089512 TAAGGAGGGGGTGGAGATTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGA
1 T--GGTGGTGGTGGAGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGA
* *
25089577 CTTGTAGACATATGGAGGAGGTGGAGA
64 CTTATAGACATATGGAGGAGGAGGAGA
25089604 CTTGTAAATG
Statistics
Matches: 317, Mismatches: 59, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
143 1 0.00
144 238 0.75
145 1 0.00
147 3 0.01
148 1 0.00
150 73 0.23
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.24
Consensus pattern (144 bp):
TGGTGGTGGTGGAGACTTGTAGACATAAGGTGCAGGTGGGGAGCGAACTGGTGGGGGTGGAGACT
TATAGACATATGGAGGAGGAGGAGAGTGGACTGGTGGTGGTGGAGACTTGTAAATATAAGGAGGG
GATGGTGAATGAAC
Found at i:25089450 original size:75 final size:75
Alignment explanation
Indices: 25089371--25089675 Score: 231
Period size: 75 Copynumber: 4.1 Consensus size: 75
25089361 GACTGGTGGT
*
25089371 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTATAGAT
1 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
* *
25089436 GTATGGTGGA
66 ATATGGAGGA
* * * * * ** * ** * * * * *
25089446 GGTGGTGA-ATGGACAGGTGGTGGAGGGGACTTAT-ATATGTA-AGGAGGTGATGGTGACTTGT-
1 GGTGGAGACTTGTAAATGT-AAGGAGGGG-GTGGTGA-ATGGACTGGTGGTGGTGGGGACTTGTA
* *
25089507 GAATATAAGGAGGG
63 G-ATATATGGAGGA
* * ** * * * * * *
25089521 GGTGGAGATTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTAGAC
1 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
25089586 ATATGGAGGA
66 ATATGGAGGA
* * * * *
25089596 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGAC
1 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
25089661 ATATGGAGGA
66 ATATGGAGGA
25089671 GGTGG
1 GGTGG
25089676 GGAGTGGACT
Statistics
Matches: 167, Mismatches: 55, Indels: 16
0.70 0.23 0.07
Matches are distributed among these distances:
74 11 0.07
75 144 0.86
76 12 0.07
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (75 bp):
GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGTGGTGGGGACTTGTAGAT
ATATGGAGGA
Found at i:25089545 original size:27 final size:26
Alignment explanation
Indices: 25089515--25089609 Score: 74
Period size: 24 Copynumber: 3.7 Consensus size: 26
25089505 GTGAATATAA
*
25089515 GGAGGGGGTGGAGATTTGTAGACATAT
1 GGAGGAGGTGGAGA-TTGTAGACATAT
* * *
25089542 GGAGGAGGTGGGGA--GTGGAC-TGGT
1 GGAGGAGGTGGAGATTGTAGACAT-AT
* *
25089566 GGTGGAGG-GGA-CTTGTAGACATAT
1 GGAGGAGGTGGAGATTGTAGACATAT
25089590 GGAGGAGGTGGAGACTTGTA
1 GGAGGAGGTGGAGA-TTGTA
25089610 AATGTAAGGA
Statistics
Matches: 50, Mismatches: 11, Indels: 14
0.67 0.15 0.19
Matches are distributed among these distances:
23 3 0.06
24 26 0.52
25 4 0.08
27 17 0.34
ACGTcount: A:0.23, C:0.05, G:0.49, T:0.22
Consensus pattern (26 bp):
GGAGGAGGTGGAGATTGTAGACATAT
Found at i:25089648 original size:48 final size:48
Alignment explanation
Indices: 25089596--25091191 Score: 1484
Period size: 48 Copynumber: 33.3 Consensus size: 48
25089586 ATATGGAGGA
* ** * * * * *
25089596 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25089644 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * *
25089692 GGTGGAGACTTGTAGATATATGGTA-GAGGTGGAGAATGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGG-AGGAGGTGGGGAGTGGACTGGTGGT
* * * * *
25089740 GGTGGAGACTTATAAACATATGGTGGAGGTGGGGAGTGAACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25089788 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGTACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * ** * * * * *
25089836 GGTGGGGACTTATGGATGTAAGGTGGTGGTGGTGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25089884 GGTGGAGACTTGTAGACAGATGGTGGAGGTGGGGAGTGGATTGGTGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25089931 GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTAGACTGGCGGT
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *** * * * *
25089979 GGTGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * *
25090026 GGTGGAGATTTGTGGATATATGGAGGAAGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25090074 GGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * * *
25090122 GGTGGGGACTTGTAGACATGTGGAGGAGGAGGAGAGTGGACTGGAGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* **** * * *
25090170 GGTGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25090218 GGTGGTGACTTGTAGACATAGGGTGGAGGTGGGGAGTGGACTGGTAGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGT-GGT
* * *
25090266 GGTGGAGATTTGT-GTACATATGAAGGAGGTGGGGAGTGGGCTGGTGGT
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *** * * * * *
25090314 GGTGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * *
25090362 GGTGGAGATTTGTGGACATATGGAGGAAGTGGGGAGTGAACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * **** * * * *
25090410 GGAGGGGACTTGTATTTGTAAGGAGGAGGTGGTGAATAGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
*
25090458 GGTGGAGACTTGTAGACATATGGTA-GAGGTGGGGAGTGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGG-AGGAGGTGGGGAGTGGACTGGTGGT
* *
25090506 GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGACTGGTGGC
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *** * * * *
25090554 GGAGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGAG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTG-GT
* *
25090602 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * **** * * * *
25090650 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATAGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25090698 GGTGGAGACTTGTAGACATACGGTA-GAGGTGGGGAGTGGATTGGTGGG
1 GGTGGAGACTTGTAGACATATGG-AGGAGGTGGGGAGTGGACTGGTGGT
* * *
25090746 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * **** * * *
25090794 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25090842 GGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGATTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25090890 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * **** * * * *
25090938 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGGCTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25090986 GGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25091034 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGTGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * ** * * * ** *
25091082 GGTGGGGACTTATAGATGTAGGGTGGTGGTGTTGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * * ** * * * *
25091130 GGAGGGGACTTATATATGTAAGGAGGTGGTGGAGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
25091178 GGTGGAGACTTGTA
1 GGTGGAGACTTGTA
25091192 CATGTATGGA
Statistics
Matches: 1231, Mismatches: 299, Indels: 36
0.79 0.19 0.02
Matches are distributed among these distances:
46 1 0.00
47 83 0.07
48 1141 0.93
49 6 0.00
ACGTcount: A:0.20, C:0.05, G:0.50, T:0.26
Consensus pattern (48 bp):
GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
Found at i:25089715 original size:27 final size:26
Alignment explanation
Indices: 25089685--25089771 Score: 67
Period size: 27 Copynumber: 3.5 Consensus size: 26
25089675 GGGAGTGGAC
*
25089685 TGGTGGTGGTGGAGACTTGTAGATATA
1 TGGTGGAGGTGGAGACTTGTAGA-ATA
* *
25089712 TGGTAGAGGTGGAGA-ATG--G-AT-
1 TGGTGGAGGTGGAGACTTGTAGAATA
* * *
25089733 TGGTGGTGGTGGAGACTTATAAACATA
1 TGGTGGAGGTGGAGACTTGTAGA-ATA
25089760 TGGTGGAGGTGG
1 TGGTGGAGGTGG
25089772 GGAGTGAACT
Statistics
Matches: 45, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
21 13 0.29
22 3 0.07
24 1 0.02
26 4 0.09
27 24 0.53
ACGTcount: A:0.24, C:0.03, G:0.44, T:0.29
Consensus pattern (26 bp):
TGGTGGAGGTGGAGACTTGTAGAATA
Found at i:25089784 original size:21 final size:21
Alignment explanation
Indices: 25089760--25089843 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 21
25089750 TATAAACATA
25089760 TGGTGGAGGTGGGGAGTGAAC
1 TGGTGGAGGTGGGGAGTGAAC
* * *
25089781 TGGTGGGGGTGGAGATTTGTGGACATA
1 TGGTGGAGGTGGGGA---GT-GA-A-C
* *
25089808 TGGAGGAGGTGGGGAGTGTAC
1 TGGTGGAGGTGGGGAGTGAAC
*
25089829 TGGTGGTGGTGGGGA
1 TGGTGGAGGTGGGGA
25089844 CTTATGGATG
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
21 26 0.55
22 1 0.02
23 1 0.02
24 4 0.09
25 2 0.04
26 1 0.02
27 12 0.26
ACGTcount: A:0.17, C:0.04, G:0.56, T:0.24
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGAAC
Found at i:25090886 original size:21 final size:21
Alignment explanation
Indices: 25090862--25090945 Score: 69
Period size: 21 Copynumber: 3.7 Consensus size: 21
25090852 TGTAGACATA
25090862 TGGTGGAGGTGGGGAGTGGAT
1 TGGTGGAGGTGGGGAGTGGAT
* *
25090883 TGGTGGGGGTGGAGATTTGTGGACAT
1 TGGTGGAGGTGGGGA---GTGG--AT
*
25090909 ATGGAGGAGGTGGGGAGTGGAT
1 -TGGTGGAGGTGGGGAGTGGAT
* *
25090931 TGGTGGTGGAGGGGA
1 TGGTGGAGGTGGGGA
25090946 CTTGTATTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
21 25 0.51
22 2 0.04
24 8 0.16
26 2 0.04
27 12 0.24
ACGTcount: A:0.17, C:0.01, G:0.58, T:0.24
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGGAT
Found at i:25090920 original size:27 final size:26
Alignment explanation
Indices: 25090835--25090921 Score: 76
Period size: 27 Copynumber: 3.5 Consensus size: 26
25090825 GTGAATGGAC
* *
25090835 TGGTGGTGGTGGAGACTTGTAGACATA
1 TGGTGGAGGTGGAGA-TTGTGGACATA
*
25090862 TGGTGGAGGTGGGGA--GTGG--AT-
1 TGGTGGAGGTGGAGATTGTGGACATA
*
25090883 TGGTGGGGGTGGAGATTTGTGGACATA
1 TGGTGGAGGTGGAGA-TTGTGGACATA
*
25090910 TGGAGGAGGTGG
1 TGGTGGAGGTGG
25090922 GGAGTGGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
21 13 0.28
22 2 0.04
24 7 0.15
26 2 0.04
27 23 0.49
ACGTcount: A:0.18, C:0.03, G:0.52, T:0.26
Consensus pattern (26 bp):
TGGTGGAGGTGGAGATTGTGGACATA
Found at i:25090928 original size:24 final size:24
Alignment explanation
Indices: 25090856--25090929 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 24
25090846 GAGACTTGTA
25090856 GACATATGGTGGAGGTGGGGAGTG
1 GACATATGGTGGAGGTGGGGAGTG
* *
25090880 G--AT-TGGTGGGGGTGGAGATTTGTG
1 GACATATGGTGGAGGTGGGGA---GTG
*
25090904 GACATATGGAGGAGGTGGGGAGTG
1 GACATATGGTGGAGGTGGGGAGTG
25090928 GA
1 GA
25090930 TTGGTGGTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
21 13 0.33
22 2 0.05
24 10 0.26
26 2 0.05
27 12 0.31
ACGTcount: A:0.20, C:0.03, G:0.54, T:0.23
Consensus pattern (24 bp):
GACATATGGTGGAGGTGGGGAGTG
Found at i:25090941 original size:24 final size:24
Alignment explanation
Indices: 25090862--25090942 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 24
25090852 TGTAGACATA
25090862 TGGTGGAGGTGGGGAGTGGATTGG
1 TGGTGGAGGTGGGGAGTGGATTGG
* * *
25090886 T-G-GG-GGTGGAGATTTGTGGACAT-A
1 TGGTGGAGGTGGGGA---GTGGA-TTGG
*
25090910 TGGAGGAGGTGGGGAGTGGATTGG
1 TGGTGGAGGTGGGGAGTGGATTGG
25090934 TGGTGGAGG
1 TGGTGGAGG
25090943 GGACTTGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 16
0.65 0.11 0.25
Matches are distributed among these distances:
21 7 0.17
22 2 0.05
23 2 0.05
24 20 0.48
25 2 0.05
26 2 0.05
27 7 0.17
ACGTcount: A:0.16, C:0.01, G:0.58, T:0.25
Consensus pattern (24 bp):
TGGTGGAGGTGGGGAGTGGATTGG
Found at i:25091030 original size:21 final size:21
Alignment explanation
Indices: 25091006--25091089 Score: 69
Period size: 21 Copynumber: 3.7 Consensus size: 21
25090996 TGTAGACATA
25091006 TGGTGGAGGTGGGGAGTGGAC
1 TGGTGGAGGTGGGGAGTGGAC
* *
25091027 TGGTGGGGGTGGAGATTTGTGGAC
1 TGGTGGAGGTGGGGA---GTGGAC
* *
25091051 ATATGGAGGAGGTGGGGTGTGGAC
1 ---TGGTGGAGGTGGGGAGTGGAC
*
25091075 TGGTGGTGGTGGGGA
1 TGGTGGAGGTGGGGA
25091090 CTTATAGATG
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
21 25 0.52
24 12 0.25
27 11 0.23
ACGTcount: A:0.14, C:0.04, G:0.58, T:0.24
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGGAC
Found at i:25091064 original size:27 final size:26
Alignment explanation
Indices: 25090979--25091065 Score: 76
Period size: 27 Copynumber: 3.5 Consensus size: 26
25090969 GTGAATGGGC
* *
25090979 TGGTGGTGGTGGAGACTTGTAGACATA
1 TGGTGGAGGTGGAGA-TTGTGGACATA
*
25091006 TGGTGGAGGTGGGGA--GTGGAC---
1 TGGTGGAGGTGGAGATTGTGGACATA
*
25091027 TGGTGGGGGTGGAGATTTGTGGACATA
1 TGGTGGAGGTGGAGA-TTGTGGACATA
*
25091054 TGGAGGAGGTGG
1 TGGTGGAGGTGG
25091066 GGTGTGGACT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
21 13 0.28
24 11 0.23
27 23 0.49
ACGTcount: A:0.18, C:0.05, G:0.52, T:0.25
Consensus pattern (26 bp):
TGGTGGAGGTGGAGATTGTGGACATA
Found at i:25097210 original size:43 final size:43
Alignment explanation
Indices: 25097149--25097631 Score: 342
Period size: 43 Copynumber: 11.2 Consensus size: 43
25097139 TAGCTTCGAT
* * * *
25097149 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
* *** * *
25097192 CTGTTACCCTACTGCTTAGGG-GTTTAAGGTCCATTGCCTT-TGAT
1 CTGTTACCCTACTGCTTAGGGTG-TTAAGGTCTA-TAAATTCAG-C
* * * * *
25097236 CTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
*
25097279 CTGTTACCCTATTGCTTAGGG-GTTTAAGGTCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTG-TTAAGGTCTATAAATTCAGC
* * ** *
25097322 CTGTTACCCTACTGCTTAAGGGT-TTAAGGCCCATCATCTTC-GAT
1 CTGTTACCCTACTGCTT-AGGGTGTTAAGGTCTAT-AAATTCAG-C
* * * * * *
25097366 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
* *
25097409 CTGTTACCCTACTACTTAGGGGGTTAAGGTCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
* * ** *
25097452 CTGTTACCCTACTGCTTAGGAGT-TTAAGGCCCATCATCTTC-GAT
1 CTGTTACCCTACTGCTTAGG-GTGTTAAGGTCTAT-AAATTCAG-C
* * * * *
25097496 CTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
* * * *
25097539 CTGTTACCCTACTGCTTAGGG-GTTTAAGGCCCATCACATTC-GAT
1 CTGTTACCCTACTGCTTAGGGTG-TTAAGGTCTAT-AAATTCAG-C
* * * *
25097583 CTGTTTCCCTACTGC---GGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
25097623 CTGTTACCC
1 CTGTTACCC
25097632 CCTAAGCCTG
Statistics
Matches: 335, Mismatches: 83, Indels: 47
0.72 0.18 0.10
Matches are distributed among these distances:
40 13 0.04
41 11 0.03
42 4 0.01
43 196 0.59
44 110 0.33
45 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGTGTTAAGGTCTATAAATTCAGC
Found at i:25097295 original size:87 final size:87
Alignment explanation
Indices: 25097146--25097833 Score: 547
Period size: 87 Copynumber: 7.8 Consensus size: 87
25097136 TTATAGCTTC
* *
25097146 GATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
***
25097211 GGGTTTAAGGTCCATTGCCTTT
66 GGGTTTAAGGTCCATTAAATTT
* * * *
25097233 GATCTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTATTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
*
25097298 GGGTTTAAGGTCTA-TAAA-TT
66 GGGTTTAAGGTCCATTAAATTT
* * * * * ** ** ** * * *
25097318 CAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCATCTTC-GATCTATTTCCCTACTGCT
1 GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-CCTGTTACCCTACTGCT
* *
25097382 TAGGGGGTTAAGAT-C-TGTAAATTT
63 TAGGGGTTTAAGGTCCAT-TAAATTT
* * * * *
25097406 -AGCCTGTTACCCTACTACTTAGGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTA
1 GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTA
* * * ** *
25097470 GGAGTTTAAGGCCCATCATCTTC
65 GGGGTTTAAGGTCCATTAAATTT
*
25097493 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
* * * *
25097558 GGGTTTAAGGCCCATCACATTC
66 GGGTTTAAGGTCCATTAAATTT
25097580 GATCTGTTTCCCTACTGC---GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCCCTAAGCCTG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTA--CCCT-A--CTG
*** * * *
25097642 -TTACCCTACTGCTTAGGGGT---TTAAGGCCCATCAT
61 CTTA----GGGGTTTA-AGGTCCATTAA-----AT-TT
**
25097676 TTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
1 GATC----TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
* * * *
25097741 TTAAGGGTTTAAGGCCCATCACATTT
62 TTAGGGGTTTAAGGTCCATTAAATTT
* * *
25097767 GATCTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTATTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
25097832 GG
66 GG
25097834 AGATAAGGCT
Statistics
Matches: 483, Mismatches: 81, Indels: 74
0.76 0.13 0.12
Matches are distributed among these distances:
84 30 0.06
85 3 0.01
86 58 0.12
87 300 0.62
88 7 0.01
89 3 0.01
90 2 0.00
91 3 0.01
92 6 0.01
93 2 0.00
94 2 0.00
95 7 0.01
96 2 0.00
97 2 0.00
98 3 0.01
99 3 0.01
100 15 0.03
101 4 0.01
103 31 0.06
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (87 bp):
GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
GGGTTTAAGGTCCATTAAATTT
Found at i:25097367 original size:130 final size:130
Alignment explanation
Indices: 25097149--25097833 Score: 696
Period size: 130 Copynumber: 5.2 Consensus size: 130
25097139 TAGCTTCGAT
* * * * *
25097149 CTGTTTCCCTACTGCTTA-GGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGT-TTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAAGG
* ** * * * *
25097213 GTTTAAGGTCCATTGCCTTTGATCTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTCAG
65 GTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
25097278 C
130 C
*
25097279 CTGTTACCCTATTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAAGGG
* * *
25097344 TTTAAGGCCCATCATCTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
66 TTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* *
25097409 CTGTTACCCTACTACTTAGGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTT-AGGA
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAAGG-
* *
25097473 GTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAG
65 GTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
25097538 C
130 C
* * * * *
25097539 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATTC-GATCTGTTTCCCTACTGCGGGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTAT-AAATTCAG-CCTGTTACCCTACTGC-----
* * ** * ** * * * *
25097603 TTAA-GATCTGTAAATTCAGCCTGTTACCCCCTAAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
59 TTAAGGGT-T-T-AA---GGCCCATCACCTTC-GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAG
** ** ** *
25097667 GCCCATCATTTTC-GAT
116 ATCTGT-AAATTCAG-C
* * * *
25097683 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAAGGG
* * * *
25097748 TTTAAGGCCCATCACATTTGATCTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
66 TTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
*
25097813 CTGTTACCCTATTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
25097834 AGATAAGGCT
Statistics
Matches: 450, Mismatches: 82, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
129 3 0.01
130 283 0.63
131 50 0.11
132 1 0.00
133 6 0.01
135 1 0.00
136 6 0.01
137 3 0.01
138 7 0.02
139 2 0.00
141 7 0.02
142 1 0.00
143 47 0.10
144 33 0.07
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (130 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAAGGG
TTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:25097702 original size:44 final size:44
Alignment explanation
Indices: 25097639--25097797 Score: 153
Period size: 44 Copynumber: 3.6 Consensus size: 44
25097629 CCCCCTAAGC
* *
25097639 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATTTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAATTTCGAT
* ** ** * *
25097683 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAATTTCGA-T
* *
25097726 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTT-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCA-ATTTCGAT
* * *
25097770 CTGTTTCTCTACTACTTAGGGGGTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
25097798 ATCTGTAAAT
Statistics
Matches: 88, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
42 1 0.01
43 31 0.35
44 52 0.59
45 4 0.05
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAATTTCGAT
Found at i:25097708 original size:187 final size:189
Alignment explanation
Indices: 25097449--25097821 Score: 660
Period size: 187 Copynumber: 2.0 Consensus size: 189
25097439 CTATAAATTC
25097449 AGCCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
* *
25097514 GGGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATT
66 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
*
25097579 CGATCTGTTTC-C-CTACTGCGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCCCTA
131 CGATCTGTTTCTCACTACTGAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCCCTA
* *
25097636 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATTTTCGATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
25097701 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
66 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
* *
25097766 TGATCTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
131 CGATCTGTTTCTC-ACTACTGAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
25097822 TATTGCTTAG
Statistics
Matches: 176, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
187 136 0.77
188 1 0.01
190 39 0.22
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (189 bp):
AGCCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
CGATCTGTTTCTCACTACTGAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCCCTA
Found at i:25097753 original size:43 final size:43
Alignment explanation
Indices: 25097683--25097833 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
25097673 CATTTTCGAT
*
25097683 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * ** ** * * *
25097726 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT-TGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* * *
25097770 CTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
*
25097813 CTGTTACCCTATTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
25097834 AGATAAGGCT
Statistics
Matches: 79, Mismatches: 26, Indels: 6
0.71 0.23 0.05
Matches are distributed among these distances:
43 49 0.62
44 30 0.38
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:25098018 original size:64 final size:64
Alignment explanation
Indices: 25097917--25098040 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
25097907 ATATCTATGT
*
25097917 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
* * *
25097981 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTG
25098041 TTATGAATGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
Found at i:25099842 original size:9 final size:9
Alignment explanation
Indices: 25099828--25099862 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
25099818 ATCTTTCCTC
25099828 TTTTTTTAT
1 TTTTTTTAT
*
25099837 TTTTTTTGT
1 TTTTTTTAT
25099846 TTTTTTTAT
1 TTTTTTTAT
25099855 ATTTTTTT
1 -TTTTTTT
25099863 TGAATTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.89
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:25100179 original size:21 final size:21
Alignment explanation
Indices: 25100148--25100195 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
25100138 GGCCATCATA
25100148 AAACTATTAGCATATGCTGTTC
1 AAAC-ATTAGCATATGCTGTTC
*
25100170 AAACATTAGCATATGTTGTTC
1 AAACATTAGCATATGCTGTTC
25100191 AAACA
1 AAACA
25100196 CCTTGCAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
AAACATTAGCATATGCTGTTC
Found at i:25105423 original size:3 final size:3
Alignment explanation
Indices: 25105417--25105482 Score: 105
Period size: 3 Copynumber: 21.7 Consensus size: 3
25105407 TCTACTTTAA
* *
25105417 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
25105465 TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT -TAT TA
25105483 GTATATACTC
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
3 55 0.95
4 3 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:25105747 original size:3 final size:3
Alignment explanation
Indices: 25105727--25105780 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
25105717 TGTATTTCAA
*
25105727 TAT TGT TAT TA- TATT TAT TA- TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
25105772 TAT TAT TAT
1 TAT TAT TAT
25105781 AATAGTGTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
2 4 0.09
3 37 0.82
4 4 0.09
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:25105938 original size:11 final size:11
Alignment explanation
Indices: 25105896--25105965 Score: 58
Period size: 11 Copynumber: 6.6 Consensus size: 11
25105886 TATGCTTTGT
25105896 TATA-TACGTA
1 TATATTACGTA
* *
25105906 TATATTATGTG
1 TATATTACGTA
*
25105917 TATTTTA--TA
1 TATATTACGTA
25105926 TATATTACGTA
1 TATATTACGTA
* *
25105937 TATTATTA-TTT
1 TA-TATTACGTA
25105948 TATATTACGTA
1 TATATTACGTA
25105959 TATATTA
1 TATATTA
25105966 AATATCGTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
9 7 0.15
10 9 0.20
11 25 0.54
12 5 0.11
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.54
Consensus pattern (11 bp):
TATATTACGTA
Found at i:25105940 original size:20 final size:22
Alignment explanation
Indices: 25105904--25105965 Score: 76
Period size: 20 Copynumber: 3.0 Consensus size: 22
25105894 GTTATATACG
* *
25105904 TATATATTATGTGTATT-TTA-
1 TATATATTACGTATATTATTAT
25105924 TATATATTACGTATATTATTAT
1 TATATATTACGTATATTATTAT
*
25105946 TTTATATTACGTATA-TATTA
1 TATATATTACGTATATTATTA
25105966 AATATCGTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.41
21 8 0.22
22 14 0.38
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.56
Consensus pattern (22 bp):
TATATATTACGTATATTATTAT
Found at i:25105961 original size:31 final size:31
Alignment explanation
Indices: 25105896--25105961 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
25105886 TATGCTTTGT
* *
25105896 TATA-TACGTATATATTATGTGTATTTTATA
1 TATATTACGTATATATTATGTGTATATTACA
* *
25105926 TATATTACGTATATTATTAT-TTTATATTACG
1 TATATTACGTATA-TATTATGTGTATATTACA
25105957 TATAT
1 TATAT
25105962 ATTAAATATC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 4 0.13
31 20 0.67
32 6 0.20
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.55
Consensus pattern (31 bp):
TATATTACGTATATATTATGTGTATATTACA
Found at i:25106038 original size:16 final size:16
Alignment explanation
Indices: 25106013--25106043 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25106003 ATATCTTTAA
25106013 TATATATTTATGTAAG
1 TATATATTTATGTAAG
*
25106029 TATATCTTTATGTAA
1 TATATATTTATGTAA
25106044 TATTAGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (16 bp):
TATATATTTATGTAAG
Found at i:25106388 original size:31 final size:29
Alignment explanation
Indices: 25106336--25106396 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 29
25106326 TAATATTTGC
*
25106336 ACATATATTTTATTCTTGTATACACATTTT
1 ACATATATATTATTCTTGTATA-ACATTTT
*
25106366 ACATATAGTATTATT-TTCGTATATCATTTT
1 ACATATA-TATTATTCTT-GTATAACATTTT
25106396 A
1 A
25106397 TTTATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.52
Consensus pattern (29 bp):
ACATATATATTATTCTTGTATAACATTTT
Found at i:25106649 original size:14 final size:14
Alignment explanation
Indices: 25106630--25106663 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
25106620 ATGTATATCC
25106630 ATTCATTGTTTTCA
1 ATTCATTGTTTTCA
25106644 ATTCATTGTTTTCA
1 ATTCATTGTTTTCA
*
25106658 TTTCAT
1 ATTCAT
25106664 GTTCAATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.59
Consensus pattern (14 bp):
ATTCATTGTTTTCA
Found at i:25111419 original size:30 final size:29
Alignment explanation
Indices: 25111360--25111420 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
25111350 GATATCAAAA
*
25111360 TTATATATAAATTTTGATTTTATGTAATT
1 TTATATATAAATTTTGATTTGATGTAATT
25111389 TTATATATGAAATTTTGATTTGAT-TCAATT
1 TTATATAT-AAATTTTGATTTGATGT-AATT
25111419 TT
1 TT
25111421 CCTAAATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (29 bp):
TTATATATAAATTTTGATTTGATGTAATT
Found at i:25111477 original size:23 final size:23
Alignment explanation
Indices: 25111451--25111495 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
25111441 ATTAAATCAA
**
25111451 CACCATTTTATGTTGATATATGG
1 CACCATTTTACATTGATATATGG
*
25111474 CACCGTTTTACATTGATATATG
1 CACCATTTTACATTGATATATG
25111496 ACATACATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.42
Consensus pattern (23 bp):
CACCATTTTACATTGATATATGG
Found at i:25114234 original size:26 final size:26
Alignment explanation
Indices: 25114205--25114256 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25114195 AATATTAAGA
25114205 TAAATAATATTTATATTTATCATAAT
1 TAAATAATATTTATATTTATCATAAT
* *
25114231 TAAATAATATTTATTTTTATGATAAT
1 TAAATAATATTTATATTTATCATAAT
25114257 ATTATTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
TAAATAATATTTATATTTATCATAAT
Found at i:25114282 original size:22 final size:22
Alignment explanation
Indices: 25114231--25114282 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
25114221 TTATCATAAT
* *
25114231 TAAATAATATTTATTTTTATGA
1 TAAATATTATTTATCTTTATGA
25114253 T-AATATTATTTATCTTTATGA
1 TAAATATTATTTATCTTTATGA
25114274 TAAATATTA
1 TAAATATTA
25114283 AATACTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TAAATATTATTTATCTTTATGA
Found at i:25114358 original size:53 final size:51
Alignment explanation
Indices: 25114205--25114335 Score: 137
Period size: 53 Copynumber: 2.6 Consensus size: 51
25114195 AATATTAAGA
* * * *
25114205 TAAATAATATTTATATTTATCAT--A-ATTAAATAATATTTATT-TTTA-T
1 TAAATATTATTTATCTTTATCATAAATATTAAATACTATTTATTATTAATT
* *
25114251 GATAATATTATTTATCTTTATGATAAATATTAAATACTAAATTTATTATTAATT
1 TA-AATATTATTTATCTTTATCATAAATATTAAATACT--ATTTATTATTAATT
*
25114305 TAAATATTATTTATCTTTATCATAAGTATTA
1 TAAATATTATTTATCTTTATCATAAATATTA
25114336 TATTACGTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
46 1 0.01
47 18 0.26
49 1 0.01
50 9 0.13
52 7 0.10
53 30 0.44
54 2 0.03
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (51 bp):
TAAATATTATTTATCTTTATCATAAATATTAAATACTATTTATTATTAATT
Found at i:25120327 original size:26 final size:26
Alignment explanation
Indices: 25120293--25120400 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
25120283 TTGATACAAT
25120293 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
25120319 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25120345 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
25120371 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25120397 TGAT
1 TGAT
25120401 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:25137562 original size:20 final size:20
Alignment explanation
Indices: 25137525--25137563 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25137515 ATTGAGTGTT
*
25137525 ATTAGACTTTATTAAGTAAA
1 ATTAGACTTAATTAAGTAAA
25137545 ATTAG-CTTAATTAGAGTAA
1 ATTAGACTTAATTA-AGTAA
25137564 TTATTGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (20 bp):
ATTAGACTTAATTAAGTAAA
Found at i:25138811 original size:25 final size:24
Alignment explanation
Indices: 25138779--25138829 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
25138769 TATGCAATGA
25138779 ATTTATTGAATTTAT-TGATTAATT
1 ATTTATTGAATTTATATG-TTAATT
25138803 ATTTGATTGAATTTATATGTTAATT
1 ATTT-ATTGAATTTATATGTTAATT
25138828 AT
1 AT
25138830 ATAATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.16
25 19 0.76
26 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (24 bp):
ATTTATTGAATTTATATGTTAATT
Found at i:25138907 original size:19 final size:21
Alignment explanation
Indices: 25138883--25138921 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25138873 ATTGAAATAT
25138883 ATTGAT-TGAA-ATATGAGAA
1 ATTGATATGAATATATGAGAA
25138902 ATTGATATGAATATATGAGA
1 ATTGATATGAATATATGAGA
25138922 TTGTGATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 4 0.22
21 8 0.44
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (21 bp):
ATTGATATGAATATATGAGAA
Found at i:25139740 original size:16 final size:17
Alignment explanation
Indices: 25139709--25139744 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
25139699 ATGAATAATA
*
25139709 ATTGATATTGTATTGTT
1 ATTGATATTATATTGTT
25139726 ATTGAT-TTATATTGTT
1 ATTGATATTATATTGTT
25139742 ATT
1 ATT
25139745 ATAAATGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (17 bp):
ATTGATATTATATTGTT
Found at i:25142754 original size:65 final size:64
Alignment explanation
Indices: 25142632--25142826 Score: 300
Period size: 65 Copynumber: 3.0 Consensus size: 64
25142622 ATCTTACCCA
**
25142632 TATTGATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTACACTCTCAATAAATTTCCTTCT
1 TATTGATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
* * *
25142696 TATTGTATTTTCTATATTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATTAATTTCCTTCT
1 TATTG-ATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
* * *
25142761 TATTGCATTTGCTATCTTTGATTAATTTATTCATTTCGAGCTATGCTCCCAATCAATTTCCTTCT
1 TATTG-ATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
25142826 T
1 T
25142827 GTCCACTATA
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
64 5 0.04
65 114 0.96
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.50
Consensus pattern (64 bp):
TATTGATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
Found at i:25143405 original size:41 final size:45
Alignment explanation
Indices: 25143349--25143451 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
25143339 CATCTATCTC
* *
25143349 CCCTG-AGTTGCAGTGGAGCA-ATT-AAGCTA-TTAACCTTA-TT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAACCTTATTT
* * *
25143389 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGATAGTGGATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAACCTTATTT
25143434 CCCTGAAGTTGCAGTGGA
1 CCCTGAAGTTGCAGTGGA
25143452 ATAGATTACA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 5 0.09
41 15 0.28
42 2 0.04
43 5 0.09
44 6 0.11
45 20 0.38
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAACCTTATTT
Found at i:25150098 original size:25 final size:25
Alignment explanation
Indices: 25150069--25150147 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 25
25150059 GATCTTTGCT
25150069 TAATTTCATATGCTCTAACTTACAG
1 TAATTTCATATGCTCTAACTTACAG
*
25150094 TAATTTCATATGCT-TCAA---AAAG
1 TAATTTCATATGCTCT-AACTTACAG
25150116 TAATTTCATATGCTCTAACTTACAG
1 TAATTTCATATGCTCTAACTTACAG
25150141 TAATTTC
1 TAATTTC
25150148 TTTTTGCAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
22 19 0.40
23 1 0.02
24 1 0.02
25 26 0.55
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.41
Consensus pattern (25 bp):
TAATTTCATATGCTCTAACTTACAG
Found at i:25150428 original size:15 final size:17
Alignment explanation
Indices: 25150393--25150426 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25150383 AATATTAAGA
25150393 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
25150410 ATTTTGTTAAATTATAT
1 ATTTTATTAAATTATAT
25150427 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:25150540 original size:18 final size:17
Alignment explanation
Indices: 25150513--25150667 Score: 74
Period size: 18 Copynumber: 9.0 Consensus size: 17
25150503 AATATTAAGA
25150513 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
25150530 ATTTCTATTAAA-T-TAT
1 ATTT-TATTAAATTATAT
* *
25150546 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
25150560 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
25150579 AGTATTA-TATATTATA-
1 A-TTTTATTAAATTATAT
25150595 ATTTTATTAAATTCATAT
1 ATTTTATTAAATT-ATAT
*** *
25150613 AAGAATATTTAATATTA-AGA
1 -ATTTTA-TTAA-ATTATA-T
25150633 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
25150650 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
25150668 TTAATAATAA
Statistics
Matches: 102, Mismatches: 18, Indels: 35
0.66 0.12 0.23
Matches are distributed among these distances:
13 2 0.02
14 5 0.05
15 10 0.10
16 10 0.10
17 23 0.23
18 32 0.31
19 9 0.09
20 8 0.08
21 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:25150584 original size:22 final size:23
Alignment explanation
Indices: 25150559--25150601 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
25150549 TAATAATAAT
*
25150559 TATTTTAAATTAT-ATTTTATAG
1 TATTATAAATTATAATTTTATAG
*
25150581 TATTATATATTATAATTTTAT
1 TATTATAAATTATAATTTTAT
25150602 TAAATTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTATAAATTATAATTTTATAG
Found at i:25150640 original size:120 final size:120
Alignment explanation
Indices: 25150271--25150697 Score: 739
Period size: 120 Copynumber: 3.5 Consensus size: 120
25150261 GAATATAATG
* *
25150271 ATTTGATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTT
1 ATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATAATTATTTTAAATTATATTT
25150336 TATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
64 TATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
*
25150393 ATTTTATTAAATTATATA-TTTTGTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
25150457 TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAAATATTAAGA
66 TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTT-AATATTAAGA
*
25150513 ATTTTATTAAATTATATATTTCTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
* * *
25150578 TAGTATTATATATTATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGA
66 TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
* *
25150633 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATCTTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
25150698 AATTATTTAT
Statistics
Matches: 292, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
119 76 0.26
120 100 0.34
121 99 0.34
122 17 0.06
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (120 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
TAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
Found at i:25150749 original size:120 final size:116
Alignment explanation
Indices: 25150271--25150809 Score: 588
Period size: 120 Copynumber: 4.5 Consensus size: 116
25150261 GAATATAATG
* * *
25150271 ATTTGATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTT
1 ATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATAATTATGTTAAATTATATTT
* * *
25150336 TATAGTATTATATATTATGATT-TTAGTAAATTCATTTAAGAATATTTAATATTAAGA
64 TATAG-ATTATATA-T-TG-TTAATAATAAATTCA-TAAAGAATATTTAATATTAAGA
* *
25150393 ATTTTATTAAATTATATA-TTTTGTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
* * *
25150457 TAGTATTATATATTATGATT-TTAGTAAATTCATTTAAGAATATTTAAATATTAAGA
66 TAG-ATTATATA-T-TG-TTAATAATAAATTCA-TAAAGAATATTT-AATATTAAGA
* *
25150513 ATTTTATTAAATTATATATTTCTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
* *
25150578 TAGTATTATATATT-ATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGA
66 TAG-ATTATATATTGTTAA---TAATAAATTCATA-AAGAATATTTAATATTAAGA
*
25150633 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATCTTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
* * * *
25150698 -A-ATTATTTATTGTTAATAATAATTTACCA-AAACAAATTTCTGCTAATTATTAAGA
66 TAGATTATATATTGTTAATAATAAATT--CATAAA-GAATAT-T--TAA-TATTAAGA
* * *
25150753 ATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATG-TTAAAT
25150810 ATGATTAAAT
Statistics
Matches: 380, Mismatches: 21, Indels: 33
0.88 0.05 0.08
Matches are distributed among these distances:
115 9 0.02
116 5 0.01
117 13 0.03
118 3 0.01
119 81 0.21
120 157 0.41
121 95 0.25
122 17 0.04
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (116 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTA
TAGATTATATATTGTTAATAATAAATTCATAAAGAATATTTAATATTAAGA
Found at i:25150751 original size:240 final size:237
Alignment explanation
Indices: 25150271--25150809 Score: 730
Period size: 240 Copynumber: 2.2 Consensus size: 237
25150261 GAATATAATG
* *
25150271 ATTTGATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTT
1 ATTTTATTAAATTATATA-TTTTATTAAATTATA--TTTAATAATAATTATTTTAAATTATATTT
* *
25150336 TATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTATT
63 TATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
* *
25150401 AAATTATATATTTTGTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
128 AAATTATATATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAG-ATTAT
* * * *
25150466 ATATTATGATTTTAGTAAATTCATTTAAGAATATTTAAATATTAAGA
192 ATATTATGATTATAATAAATTCA-TAAAAAATATTTAAATATTAAGA
25150513 ATTTTATTAAATTATATATTTCTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTT-TATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
*
25150578 TAGTATTATATATTATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
65 TAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* *
25150643 ATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATCTTTTA-A-ATTATTT
130 ATTATATA-TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGATTATAT
* * *
25150706 A-T-TG-TTAATAATAATTTACCA-AAACAAATTTCTGCTAATTATTAAGA
194 ATTATGATT-ATAATAAATT--CATAAA-AAATAT-T--TAAATATTAAGA
* *
25150753 ATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 ATTTTATTAAATTATATATTTT-ATTAAATTATATTTAATAATAATTAT-TTTAAAT
25150810 ATGATTAAAT
Statistics
Matches: 268, Mismatches: 18, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
235 2 0.01
236 11 0.04
237 5 0.02
238 10 0.04
239 1 0.00
240 158 0.59
241 53 0.20
242 28 0.10
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (237 bp):
ATTTTATTAAATTATATATTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTAT
AGTATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAA
TTATATATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGATTATATAT
TATGATTATAATAAATTCATAAAAAATATTTAAATATTAAGA
Found at i:25150781 original size:18 final size:17
Alignment explanation
Indices: 25150753--25150787 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25150743 ATTATTAAGA
*
25150753 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25150770 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25150788 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25150787 original size:16 final size:16
Alignment explanation
Indices: 25150753--25150807 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
25150743 ATTATTAAGA
25150753 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
25150770 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
25150786 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
25150800 ATGTTTAA
1 AT-TTTAA
25150808 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:25151044 original size:16 final size:16
Alignment explanation
Indices: 25151023--25151091 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
25151013 GATTTGCTAT
25151023 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25151039 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
25151056 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25151072 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
25151088 TACA
1 TACA
25151092 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:25151065 original size:33 final size:32
Alignment explanation
Indices: 25151023--25151091 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
25151013 GATTTGCTAT
25151023 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
25151056 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
25151088 TACA
1 TACA
25151092 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:25156097 original size:3 final size:3
Alignment explanation
Indices: 25156089--25156121 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
25156079 ACTACCTTAG
*
25156089 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
25156122 CAATTTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:25156313 original size:27 final size:25
Alignment explanation
Indices: 25156261--25156322 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
25156251 TTTGCTGTCC
* *
25156261 TTTTATTTATTTTATAATCAGTTTATT
1 TTTTATTT-TTTTAAAACCAGTTTA-T
*
25156288 TTTTATTTTTTTAAAACCCGTATTAT
1 TTTTATTTTTTTAAAACCAGT-TTAT
*
25156314 TGTTATTTT
1 TTTTATTTT
25156323 ATCATTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.24, C:0.06, G:0.05, T:0.65
Consensus pattern (25 bp):
TTTTATTTTTTTAAAACCAGTTTAT
Found at i:25161499 original size:39 final size:40
Alignment explanation
Indices: 25161396--25161503 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
25161386 AGATTAACCG
* *
25161396 AACACATCAGACAGAAGCTCATAAGAGCTGATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCAA
* * * * * *
25161436 AATACACCAAACAAAAGCTTATAAGAGCTGCTCCACCCGA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCAA
**
25161476 AACATGCC-AACAGAAGCTCATAAGAGCT
1 AACACACCAAACAGAAGCTCATAAGAGCT
25161504 AAGCAGAAGC
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
39 18 0.33
40 37 0.67
ACGTcount: A:0.44, C:0.28, G:0.15, T:0.14
Consensus pattern (40 bp):
AACACACCAAACAGAAGCTCATAAGAGCTGATCCAACCAA
Found at i:25171974 original size:47 final size:47
Alignment explanation
Indices: 25171887--25172101 Score: 349
Period size: 47 Copynumber: 4.6 Consensus size: 47
25171877 CCCTTCGGGA
* * * * * *
25171887 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25171934 CCTGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25171981 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25172028 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25172075 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25172102 ACCAACCCTT
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25172363 original size:40 final size:39
Alignment explanation
Indices: 25172326--25172417 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
25172316 GCTACTCGTT
*
25172326 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
25172366 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
25172405 CAAATGCCTTCGG
1 CAAATGCCTTCGG
25172418 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:25172397 original size:39 final size:40
Alignment explanation
Indices: 25172307--25172467 Score: 170
Period size: 40 Copynumber: 4.0 Consensus size: 40
25172297 CGAAATTTAA
** *
25172307 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
25172347 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25172386 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
25172426 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
25172466 CC
1 CC
25172468 AGACATCATT
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 55 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25194976 original size:40 final size:40
Alignment explanation
Indices: 25194900--25194976 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
25194890 ACACCATGTG
* * * *
25194900 GGGATAAAATCGACCCACCTAGCCTTACACACCAAGTATA
1 GGGATAAAATCAACCCACCTAACCCTACACAACAAGTATA
* * *
25194940 GGGATAGAATCAACCCATCTAACCCTACATAACAAGT
1 GGGATAAAATCAACCCACCTAACCCTACACAACAAGT
25194977 GGTACTGTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.39, C:0.29, G:0.14, T:0.18
Consensus pattern (40 bp):
GGGATAAAATCAACCCACCTAACCCTACACAACAAGTATA
Found at i:25197809 original size:20 final size:21
Alignment explanation
Indices: 25197775--25197830 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
25197765 TGATGATATT
*
25197775 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
25197796 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
25197816 TTTTATTATTTTAAT
1 TTATATTATTTTAAT
25197831 ATTATTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.13
20 14 0.45
21 13 0.42
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:25197821 original size:18 final size:20
Alignment explanation
Indices: 25197780--25197830 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
25197770 ATATTTTATG
*
25197780 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
*
25197799 ATTATTTTAATGAGATATTTT
1 ATTATTTTAATGAGATA-TAT
25197820 ATTATTTTAAT
1 ATTATTTTAAT
25197831 ATTATTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:25197835 original size:11 final size:11
Alignment explanation
Indices: 25197818--25197856 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
25197808 ATGAGATATT
25197818 TTATTATTTTA
1 TTATTATTTTA
* *
25197829 ATATTATTTCA
1 TTATTATTTTA
25197840 TTATTATTTTA
1 TTATTATTTTA
25197851 TTATTA
1 TTATTA
25197857 ATTATTTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:25200045 original size:46 final size:46
Alignment explanation
Indices: 25199993--25200164 Score: 238
Period size: 46 Copynumber: 3.7 Consensus size: 46
25199983 AGTGTGCTCT
*
25199993 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
25200039 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
25200085 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
25200131 ATGACA-GAAAATAAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
25200165 CACTACGGCA
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 113 0.99
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:25209011 original size:40 final size:38
Alignment explanation
Indices: 25208925--25209013 Score: 99
Period size: 40 Copynumber: 2.3 Consensus size: 38
25208915 CCATCTCCGT
* * *
25208925 CCAACCC-AGCACACCATGTAGGGATAAAATTAACCCAC
1 CCAACCCTA-CACACCAAGTAGGGATAAAATCAACCCAA
* *
25208963 CCAGCCCTACACACCAAGTATGGGTATAGAATCAACCCAA
1 CCAACCCTACACACCAAGTA-GGG-ATAAAATCAACCCAA
25209003 CCAACCCTACA
1 CCAACCCTACA
25209014 TAACAAGTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
38 16 0.38
39 4 0.10
40 22 0.52
ACGTcount: A:0.38, C:0.36, G:0.12, T:0.13
Consensus pattern (38 bp):
CCAACCCTACACACCAAGTAGGGATAAAATCAACCCAA
Found at i:25220000 original size:17 final size:17
Alignment explanation
Indices: 25219980--25220012 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25219970 TGTTTTACTA
*
25219980 TTGTTTTTATTTTTATC
1 TTGTTTCTATTTTTATC
25219997 TTGTTTCTATTTTTAT
1 TTGTTTCTATTTTTAT
25220013 TCCATTGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (17 bp):
TTGTTTCTATTTTTATC
Found at i:25229275 original size:5 final size:5
Alignment explanation
Indices: 25229265--25229331 Score: 50
Period size: 6 Copynumber: 12.8 Consensus size: 5
25229255 TATGTTTTTC
*
25229265 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT -AAAAT
25229313 AAAAT AAGAAT -AAAT AAAA
1 AAAAT AA-AAT AAAAT AAAA
25229332 AAATAGGAGG
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.06
4 3 0.06
5 19 0.36
6 28 0.53
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:25229294 original size:6 final size:6
Alignment explanation
Indices: 25229285--25229336 Score: 63
Period size: 6 Copynumber: 8.8 Consensus size: 6
25229275 AATAAAATTG
* *
25229285 AAATGA AAATAA AAATAA AAATAA AAAT-A AAATAA GAATAA ATAA-AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATAA
25229332 AAATA
1 AAATA
25229337 GGAGGAGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
5 7 0.17
6 31 0.77
7 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:25229300 original size:12 final size:11
Alignment explanation
Indices: 25229265--25229332 Score: 66
Period size: 12 Copynumber: 5.9 Consensus size: 11
25229255 TATGTTTTTC
25229265 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
25229278 AAAATTGAAAT
1 AAAATAAAAAT
25229289 GAAAATAAAAAT
1 -AAAATAAAAAT
25229301 AAAAATAAAAAT
1 -AAAATAAAAAT
*
25229313 AAAATAAGAAT
1 AAAATAAAAAT
25229324 -AAATAAAAA
1 AAAATAAAAA
25229333 AATAGGAGGA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
10 8 0.17
11 13 0.28
12 21 0.45
13 5 0.11
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:25229316 original size:23 final size:23
Alignment explanation
Indices: 25229285--25229336 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
25229275 AATAAAATTG
25229285 AAATGAAAATAAAAATAAA-AATAA
1 AAAT-AAAATAAAAATAAATAA-AA
*
25229309 AAATAAAATAAGAATAAATAAAA
1 AAATAAAATAAAAATAAATAAAA
25229332 AAATA
1 AAATA
25229337 GGAGGAGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (23 bp):
AAATAAAATAAAAATAAATAAAA
Found at i:25239687 original size:27 final size:27
Alignment explanation
Indices: 25239649--25239702 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
25239639 ACTAGGTGTT
*
25239649 AATTAGAAAGAGATTTTAATTAATCAA
1 AATTAGAAAGAGATTTCAATTAATCAA
25239676 AATTAGAAAGAGATTTCAATTAATCAA
1 AATTAGAAAGAGATTTCAATTAATCAA
25239703 CCTAGGGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (27 bp):
AATTAGAAAGAGATTTCAATTAATCAA
Found at i:25245168 original size:6 final size:6
Alignment explanation
Indices: 25245147--25245186 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
25245137 GTTTAAAAAC
* *
25245147 TTTTTA TTTATTA TTTTTA TTTTTA CTTTTA TCTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
25245187 ATCTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:25249526 original size:50 final size:50
Alignment explanation
Indices: 25249402--25249538 Score: 165
Period size: 50 Copynumber: 2.8 Consensus size: 50
25249392 AATCAATAAG
* * *
25249402 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA--ACT-TATCCCTGAG
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTCTATCACTGAA
* * *
25249449 TACCTATACTATGGCTCGTAGCCAAATCAAGGTATTACTCT-TTACTGACA
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTCTATCACTGA-A
* *
25249499 TACTTATACCATGGCACGTAGCTAAATCAAGGTATTACTC
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTC
25249539 ACACCCGAAG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
47 32 0.42
49 8 0.10
50 37 0.48
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (50 bp):
TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTCTATCACTGAA
Found at i:25252764 original size:27 final size:27
Alignment explanation
Indices: 25252725--25252839 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
25252715 TGGAAGAAGC
* *
25252725 GTTCTGGTTGCTATGTCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
25252752 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
25252779 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * * *
25252806 GCATCTGGTGACTTTGTCAC-AATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
25252833 GTTCTGG
1 GTTCTGG
25252840 CATCCATGCT
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.06
27 60 0.76
28 14 0.18
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:25256940 original size:27 final size:28
Alignment explanation
Indices: 25256910--25256986 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 28
25256900 ATATCTATTT
*
25256910 TGGTGCCTCTGCT-ACAATATCTGCATA
1 TGGTGACTCTGCTCACAATATCTGCATA
* * *
25256937 TGGTGACTCT-CTCATAATATCTGTATC
1 TGGTGACTCTGCTCACAATATCTGCATA
25256964 TGGTGACTCTG-TCACAATATCTG
1 TGGTGACTCTGCTCACAATATCTG
25256987 TTCTGTTAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 2 0.05
27 41 0.95
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (28 bp):
TGGTGACTCTGCTCACAATATCTGCATA
Found at i:25257983 original size:16 final size:16
Alignment explanation
Indices: 25257962--25257994 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
25257952 TTAAGTCCTT
25257962 TTGTCAAATTAAGCAC
1 TTGTCAAATTAAGCAC
25257978 TTGTCAAATTAAGCAC
1 TTGTCAAATTAAGCAC
25257994 T
1 T
25257995 CAAACTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (16 bp):
TTGTCAAATTAAGCAC
Found at i:25276069 original size:19 final size:19
Alignment explanation
Indices: 25276045--25276081 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25276035 AAAGGGTGTT
*
25276045 TTTTTATTTCTATTTTCTA
1 TTTTTATTTCAATTTTCTA
25276064 TTTTTATTTCAATTTTCT
1 TTTTTATTTCAATTTTCT
25276082 TTTCTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTATTTCAATTTTCTA
Found at i:25276148 original size:23 final size:23
Alignment explanation
Indices: 25276118--25276164 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
25276108 AGGTTTAAAA
25276118 AAAGAGGGTAGTCGATTTTTTTT
1 AAAGAGGGTAGTCGATTTTTTTT
*
25276141 AAAGAGGGTAGTCTATTTTTTTT
1 AAAGAGGGTAGTCGATTTTTTTT
25276164 A
1 A
25276165 CTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.45
Consensus pattern (23 bp):
AAAGAGGGTAGTCGATTTTTTTT
Found at i:25277062 original size:20 final size:20
Alignment explanation
Indices: 25277037--25277076 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
25277027 CTATCTTTTA
* *
25277037 TTATTTTTTTATTTTTACTT
1 TTATTTATTTATTTATACTT
25277057 TTATTTATTTATTTATACTT
1 TTATTTATTTATTTATACTT
25277077 GAGGCTCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (20 bp):
TTATTTATTTATTTATACTT
Found at i:25278705 original size:13 final size:13
Alignment explanation
Indices: 25278687--25278720 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25278677 GCCACATAGT
25278687 CGTGTGGCCACAC
1 CGTGTGGCCACAC
*
25278700 CGTGTGGCCAGAC
1 CGTGTGGCCACAC
*
25278713 CATGTGGC
1 CGTGTGGC
25278721 ACCAAAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (13 bp):
CGTGTGGCCACAC
Found at i:25287721 original size:25 final size:25
Alignment explanation
Indices: 25287693--25287770 Score: 88
Period size: 25 Copynumber: 3.1 Consensus size: 25
25287683 GCAAGCTTCA
*
25287693 TGCCGATGTATATTATCAGGCTTTG
1 TGCCGATGTAAATTATCAGGCTTTG
*
25287718 TGCCGGTGTAAATTAGT-AGGCTTTG
1 TGCCGATGTAAATTA-TCAGGCTTTG
* *
25287743 T-CCCAGGGTAAATTATCAGGCTTTG
1 TGCCGA-TGTAAATTATCAGGCTTTG
25287768 TGC
1 TGC
25287771 TTAACAAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
24 3 0.07
25 39 0.89
26 2 0.05
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.36
Consensus pattern (25 bp):
TGCCGATGTAAATTATCAGGCTTTG
Found at i:25290743 original size:14 final size:14
Alignment explanation
Indices: 25290717--25290754 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
25290707 TCACATGACC
25290717 AATTAATTT-AATTT
1 AATT-ATTTAAATTT
*
25290731 AATTTTTTAAATTT
1 AATTATTTAAATTT
25290745 AATTATTTAA
1 AATTATTTAA
25290755 TTAAATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 3 0.14
14 18 0.86
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
AATTATTTAAATTT
Found at i:25294416 original size:11 final size:11
Alignment explanation
Indices: 25294366--25294416 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
25294356 ACTTTTATAA
25294366 TTTTTCAAAAT
1 TTTTTCAAAAT
*
25294377 ATTTTT-AAAAC
1 -TTTTTCAAAAT
*
25294388 TTTTTAAATAACT
1 TTTTTCAA-AA-T
25294401 TTTTTCAAAAT
1 TTTTTCAAAAT
25294412 TTTTT
1 TTTTT
25294417 GAAATTATAG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 5 0.15
11 12 0.36
12 9 0.27
13 7 0.21
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTTCAAAAT
Found at i:25295291 original size:13 final size:13
Alignment explanation
Indices: 25295275--25295300 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25295265 GTTTATTTTT
25295275 CTTCTGGAATTCA
1 CTTCTGGAATTCA
25295288 CTTCTGGAATTCA
1 CTTCTGGAATTCA
25295301 ATTATGGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
CTTCTGGAATTCA
Found at i:25296889 original size:6 final size:6
Alignment explanation
Indices: 25296878--25296915 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
25296868 AGCATAATCG
* *
25296878 TCGTCA TCGTCA TCGTCA TCGTCA TCATCG TCGTCA TC
1 TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TC
25296916 ATTATCATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.16, C:0.34, G:0.16, T:0.34
Consensus pattern (6 bp):
TCGTCA
Found at i:25296901 original size:18 final size:18
Alignment explanation
Indices: 25296878--25296927 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
25296868 AGCATAATCG
*
25296878 TCGTCATCGTCATCGTCA
1 TCGTCATCATCATCGTCA
*
25296896 TCGTCATCATCGTCGTCA
1 TCGTCATCATCATCGTCA
* *
25296914 TCATTATCATCATC
1 TCGTCATCATCATC
25296928 ATCCTCACTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (18 bp):
TCGTCATCATCATCGTCA
Found at i:25296916 original size:12 final size:12
Alignment explanation
Indices: 25296881--25296930 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
25296871 ATAATCGTCG
*
25296881 TCATCGTCATCG
1 TCATCGTCATCA
25296893 TCATCGTCATCA
1 TCATCGTCATCA
*
25296905 TCGTCGTCATCA
1 TCATCGTCATCA
* *
25296917 TTATCATCATCA
1 TCATCGTCATCA
25296929 TC
1 TC
25296931 CTCACTGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.22, C:0.32, G:0.10, T:0.36
Consensus pattern (12 bp):
TCATCGTCATCA
Found at i:25298817 original size:20 final size:20
Alignment explanation
Indices: 25298781--25298824 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
25298771 TTATAATGTT
*
25298781 TTTAAAATTATCAAAAATTC
1 TTTAAAATTATCAAAAATTA
*
25298801 TTTAAAATT-TTAGAAAATTA
1 TTTAAAATTATCA-AAAATTA
25298821 TTTA
1 TTTA
25298825 TTTATTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (20 bp):
TTTAAAATTATCAAAAATTA
Found at i:25299686 original size:20 final size:21
Alignment explanation
Indices: 25299659--25299707 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
25299649 TACCCTAATT
*
25299659 AATTTTTTGA-ATTTTT-A-A
1 AATTTTTTTATATTTTTGATA
25299677 AGATTTTTTTATATTTTTGATA
1 A-ATTTTTTTATATTTTTGATA
25299699 AATTTTTTT
1 AATTTTTTT
25299708 CAACATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.04
19 8 0.31
20 6 0.23
21 9 0.35
22 2 0.08
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (21 bp):
AATTTTTTTATATTTTTGATA
Found at i:25301168 original size:93 final size:93
Alignment explanation
Indices: 25301055--25301226 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
25301045 CGCCCATAAG
* * *
25301055 TGAACTCCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCCGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
25301120 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
25301148 TGAACT-CGAACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCCG-ACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
25301212 AACGAGCTCGGATGC
65 AACGAGCTCGGATGC
25301227 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
TGAACTCCGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:25301223 original size:46 final size:46
Alignment explanation
Indices: 25301048--25301223 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
25301038 TGTAACCCGC
* * *
25301048 CCATAAGTGAACTCCGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
25301094 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
25301144 CTC-T---TGAACTCGAACTCAACTCAACAAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
25301187 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
25301224 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 62 0.57
47 27 0.25
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:25309142 original size:3 final size:3
Alignment explanation
Indices: 25309134--25309188 Score: 56
Period size: 3 Copynumber: 17.7 Consensus size: 3
25309124 TAATGGAAGG
* * * *
25309134 AAT AAT AAT AAT AAT AGT AAT AAT AGT AAT AAT ACAG AGAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT
25309181 AAT AAT AA
1 AAT AAT AA
25309189 AGAAACATTG
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 38 0.90
4 4 0.10
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:25316321 original size:16 final size:17
Alignment explanation
Indices: 25316300--25316337 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
25316290 TTATATCAAC
25316300 AAAATAAA-AAATTTTA
1 AAAATAAACAAATTTTA
**
25316316 AAAATAAACTTATTTTA
1 AAAATAAACAAATTTTA
25316333 AAAAT
1 AAAAT
25316338 TTAAATTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATAAACAAATTTTA
Done.