Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 88 of 295
Found at i:25980396 original size:21 final size:22
Alignment explanation
Indices: 25980357--25980409 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
25980347 CATACAATTG
*
25980357 TTAAAATAATATTATAATATCA
1 TTAAAATAATATTACAATATCA
*
25980379 TTAATATAA-ATTACAATAT-A
1 TTAAAATAATATTACAATATCA
*
25980399 ATAAAATAATA
1 TTAAAATAATA
25980410 ATATAGTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 10 0.38
22 8 0.31
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAATAATATTACAATATCA
Found at i:25984994 original size:22 final size:22
Alignment explanation
Indices: 25984969--25985012 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25984959 AGCTACTAAA
*
25984969 AGACTACTAGCTTGTTATTGAC
1 AGACTACGAGCTTGTTATTGAC
25984991 AGACTACGAGCTTGTTATTGAC
1 AGACTACGAGCTTGTTATTGAC
25985013 TACCATTCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (22 bp):
AGACTACGAGCTTGTTATTGAC
Found at i:25987934 original size:42 final size:44
Alignment explanation
Indices: 25987829--25987986 Score: 123
Period size: 43 Copynumber: 3.7 Consensus size: 44
25987819 ATGAGATTTT
* * * *
25987829 GTGTAAGAGCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTAC
1 GTGTAAGACCATGCCTGGGACAG-TGGCATCGA-TATTTGATTTAC
25987873 GTGTAAGACCATGCCTGGGACA-TCGGCATCG-TATTTGATTT-C
1 GTGTAAGACCATGCCTGGGACAGT-GGCATCGATATTTGATTTAC
* ** *
25987915 GTGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTG-GTTAC
1 GTGTAAGACCATGCCTGGGACAGTGGCATCGATATTTGATTTAC
* * * *
25987958 ATATAAGACCAGGTCTGGGAC-GTTGGCAT
1 GTGTAAGACCATGCCTGGGACAG-TGGCAT
25987987 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 31 0.33
43 38 0.40
44 25 0.27
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (44 bp):
GTGTAAGACCATGCCTGGGACAGTGGCATCGATATTTGATTTAC
Found at i:25989221 original size:16 final size:17
Alignment explanation
Indices: 25989190--25989222 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25989180 TTCATAAGCA
*
25989190 TATATCATTCATTTTAT
1 TATATCAATCATTTTAT
25989207 TATATCAAT-ATTTTAT
1 TATATCAATCATTTTAT
25989223 GCACTGTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (17 bp):
TATATCAATCATTTTAT
Found at i:25989626 original size:46 final size:46
Alignment explanation
Indices: 25989559--25989763 Score: 270
Period size: 46 Copynumber: 4.5 Consensus size: 46
25989549 TATTCATTTT
*
25989559 TATCTTTCAACCATGGTCTTATTTATTTCCTGTCATGTTGTCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGTCATGG
* *
25989605 TATCTTTCAACCATGGTCTTATTAATTTCCTGTCATGTT-TCCATGA
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGT-CATGG
* *
25989651 TATCTTACAACCATGGTCTTATTCATTTTCTGTCATGTTG-CTATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGTC-ATGG
* * * * *
25989697 TATCTTTCAACCATGGTCTTATTCATTTCTTATCATATTGCCATAG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGTCATGG
* *
25989743 TATCTTTCAACTATAGTCTTA
1 TATCTTTCAACCATGGTCTTA
25989764 CATATCTGAA
Statistics
Matches: 141, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
45 2 0.01
46 138 0.98
47 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGTCATGG
Found at i:25989857 original size:45 final size:45
Alignment explanation
Indices: 25989735--25989858 Score: 160
Period size: 45 Copynumber: 2.8 Consensus size: 45
25989725 CTTATCATAT
* * *
25989735 TGCCATAGTATCTTTCAACTATAGTCTTACAT-ATCTGAATTGTGA
1 TGCCATAGTATCTTTCAACTATGGTCTTAC-TCGTCTGAATTGCGA
** * *
25989780 TGCCATAACATCTTTCAGCTATGGACTTACTCGTCTGAATTGCGA
1 TGCCATAGTATCTTTCAACTATGGTCTTACTCGTCTGAATTGCGA
*
25989825 TGGCATAGTATCTTTCAACTATGGTCTTACTCGT
1 TGCCATAGTATCTTTCAACTATGGTCTTACTCGT
25989859 TTCTGGTATG
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.02
45 65 0.98
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (45 bp):
TGCCATAGTATCTTTCAACTATGGTCTTACTCGTCTGAATTGCGA
Found at i:25991560 original size:11 final size:11
Alignment explanation
Indices: 25991544--25991591 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
25991534 CTTTATATAG
25991544 TAATAAAATAA
1 TAATAAAATAA
*
25991555 TAATAAAATATCT
1 TAATAAAATA--A
* *
25991568 TATTAAAATAT
1 TAATAAAATAA
25991579 TAATAAAATAA
1 TAATAAAATAA
25991590 TA
1 TA
25991592 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:25991864 original size:30 final size:29
Alignment explanation
Indices: 25991828--25991900 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
25991818 CACCCTTAAA
** *
25991828 ATATTTACACTATTAGTCCTTCAAATTTTC
1 ATATTTACACT-TTAACCCCTCAAATTTTC
* *
25991858 ATATTTATACTTTAACCCCTCAAATTTTG
1 ATATTTACACTTTAACCCCTCAAATTTTC
*
25991887 AGTATTTACTCTTT
1 A-TATTTACACTTT
25991901 GCAACAAAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (29 bp):
ATATTTACACTTTAACCCCTCAAATTTTC
Found at i:25993616 original size:20 final size:21
Alignment explanation
Indices: 25993580--25993622 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
25993570 ATTTTTTATC
25993580 TTTTCCTTCTTTATCTT-TTT
1 TTTTCCTTCTTTATCTTCTTT
*
25993600 TTTTCC-TCATTTCTCTTCTTT
1 TTTTCCTTC-TTTATCTTCTTT
25993621 TT
1 TT
25993623 GCCATCCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 13 0.65
21 5 0.25
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTCCTTCTTTATCTTCTTT
Found at i:25995524 original size:21 final size:21
Alignment explanation
Indices: 25995475--25995524 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
25995465 TTGCAGCTTG
* *
25995475 TCTGCA-TTATTGGTGGTTTA
1 TCTGCATTTACTGGTAGTTTA
*
25995495 -CCGCAATTTACTGGTAGTTTA
1 TCTGC-ATTTACTGGTAGTTTA
25995516 TCTGCATTT
1 TCTGCATTT
25995525 CTAGTGGCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
19 3 0.13
20 1 0.04
21 16 0.70
22 3 0.13
ACGTcount: A:0.18, C:0.16, G:0.20, T:0.46
Consensus pattern (21 bp):
TCTGCATTTACTGGTAGTTTA
Found at i:25999731 original size:165 final size:160
Alignment explanation
Indices: 25999454--25999779 Score: 424
Period size: 165 Copynumber: 2.0 Consensus size: 160
25999444 TCAAGTCATG
** * * *
25999454 TCAAGCATATGATTGTCAAATCTCAAAATCTAAAATATCTTCATTGCAAAACTCGCATAATTCTT
1 TCAAGCATACAATTGTCAAATCGCAAAATCTAAAATATCTTCATTGCAAAACTCACATAATTCAT
* * *
25999519 ATGTATAATTTTTATAGTCTTAGGAAATAAAGAGATTTGGCCTTTCAAATGAGTAGTGCAGAAAA
66 ATGTATAATTTTTATAATCATAGGAAATAAAGAGAATTGGCCTTTCAAATGAGTAGTGCAGAAAA
*
25999584 TTTACAGATTCAAATTTTG-AAGCGTTGAAA
131 TTTACACATTC-AATTTTGTAAGCGTTGAAA
* * *
25999614 TCAAGCATACAATTTTCAAATCGCAAATTCTAAGAATATTTTTCATTGCAAAAACTCACATAATT
1 TCAAGCATACAATTGTCAAATCGCAAAATCTAA-AATA-TCTTCATTGC-AAAACTCACATAATT
* *
25999679 CATACT-TATAA-TTTTAGTGAAATCATATGAAATAAAGAGAATTGGCCTTTCAAATGATTAGTG
63 CATA-TGTATAATTTTTA-T--AATCATAGGAAATAAAGAGAATTGGCCTTTCAAATGAGTAGTG
*
25999742 CAGAAAATTTACACATTCAATTTTGTAAGTGTTGAAA
124 CAGAAAATTTACACATTCAATTTTGTAAGCGTTGAAA
25999779 T
1 T
25999780 TAAATGAATG
Statistics
Matches: 143, Mismatches: 15, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
160 28 0.20
161 4 0.03
162 14 0.10
163 23 0.16
164 8 0.06
165 66 0.46
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (160 bp):
TCAAGCATACAATTGTCAAATCGCAAAATCTAAAATATCTTCATTGCAAAACTCACATAATTCAT
ATGTATAATTTTTATAATCATAGGAAATAAAGAGAATTGGCCTTTCAAATGAGTAGTGCAGAAAA
TTTACACATTCAATTTTGTAAGCGTTGAAA
Found at i:26013108 original size:12 final size:12
Alignment explanation
Indices: 26013077--26013109 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26013067 GATTTCCATC
26013077 TCTTTTTTCTTT
1 TCTTTTTTCTTT
26013089 T-TCTTTTTCTTT
1 TCT-TTTTTCTTT
26013101 TCTTTTTTC
1 TCTTTTTTC
26013110 AGAGCTGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TCTTTTTTCTTT
Found at i:26014118 original size:14 final size:14
Alignment explanation
Indices: 26014099--26014132 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26014089 ATACAATATC
26014099 AAAATAATAACAAT
1 AAAATAATAACAAT
*
26014113 AAAATAGTAACAAT
1 AAAATAATAACAAT
*
26014127 ATAATA
1 AAAATA
26014133 TTGAAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (14 bp):
AAAATAATAACAAT
Found at i:26015583 original size:14 final size:14
Alignment explanation
Indices: 26015564--26015590 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26015554 ATGTTAAAAA
26015564 ATTTTAAAAATTTT
1 ATTTTAAAAATTTT
26015578 ATTTTAAAAATTT
1 ATTTTAAAAATTT
26015591 CAGTCCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTTAAAAATTTT
Found at i:26015809 original size:28 final size:29
Alignment explanation
Indices: 26015769--26015826 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
26015759 TAAATTAGAA
*
26015769 AAAATAAAAAGACTTAGTTTT-AATTTTT
1 AAAATAAAAAGACTAAGTTTTAAATTTTT
* *
26015797 AAAATATAGAGACTAAGTTTTAAATTTTT
1 AAAATAAAAAGACTAAGTTTTAAATTTTT
26015826 A
1 A
26015827 TATAAATACG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (29 bp):
AAAATAAAAAGACTAAGTTTTAAATTTTT
Found at i:26015905 original size:13 final size:13
Alignment explanation
Indices: 26015887--26015911 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26015877 ACTTTAAGCC
26015887 AAAATATTTATAA
1 AAAATATTTATAA
26015900 AAAATATTTATA
1 AAAATATTTATA
26015912 TTTATCATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATATTTATAA
Found at i:26020647 original size:24 final size:24
Alignment explanation
Indices: 26020614--26020664 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
26020604 TAATAAGTAA
*
26020614 TAATACTTAAAAAATGTAGATTTT
1 TAATACTTAAAAAATGTAGATTAT
* *
26020638 TAATAGTTAAAAGATGTAGATTAT
1 TAATACTTAAAAAATGTAGATTAT
26020662 TAA
1 TAA
26020665 CCTTGGTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (24 bp):
TAATACTTAAAAAATGTAGATTAT
Found at i:26024627 original size:21 final size:21
Alignment explanation
Indices: 26024601--26024647 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
26024591 TCTGTTCTGT
*
26024601 TCCGCCTCCCTCGCTGCTGCC
1 TCCGCCTCCCGCGCTGCTGCC
26024622 TCCGCCTCCCGCGCTGCTGCC
1 TCCGCCTCCCGCGCTGCTGCC
26024643 TCCGC
1 TCCGC
26024648 TCTAAGTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.00, C:0.57, G:0.21, T:0.21
Consensus pattern (21 bp):
TCCGCCTCCCGCGCTGCTGCC
Found at i:26030170 original size:9 final size:9
Alignment explanation
Indices: 26030156--26030226 Score: 70
Period size: 9 Copynumber: 7.6 Consensus size: 9
26030146 ATGTATTAGT
26030156 TAAGTTATG
1 TAAGTTATG
26030165 TAAGTTGTTATG
1 TAA---GTTATG
*
26030177 TACGTTATG
1 TAAGTTATG
*
26030186 TGAGTTATG
1 TAAGTTATG
*
26030195 TAAATTATG
1 TAAGTTATG
26030204 TAAGTTATG
1 TAAGTTATG
* *
26030213 TAATTTATT
1 TAAGTTATG
26030222 TAAGT
1 TAAGT
26030227 AATGATCAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 42 0.84
12 8 0.16
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:26031090 original size:240 final size:241
Alignment explanation
Indices: 26030407--26031373 Score: 1803
Period size: 240 Copynumber: 4.0 Consensus size: 241
26030397 TTAAGGTTAT
* *
26030407 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
26030472 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
26030537 ACTCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
26030602 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACTTGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
* *
26030648 ATAGATATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
26030713 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
26030778 ACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* *
26030843 AGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTCCATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
26030889 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA-TTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
26030953 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
26031018 ACCCGTCAGGTTTCCAGCCTATGTACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
26031083 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
*
26031129 ATAAATATTCAATAATAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
26031194 TCATCATACGT-GCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
*
26031258 ACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
26031323 GGTCAGTTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
26031369 ATAAA
1 ATAAA
26031374 ATTAATTCAT
Statistics
Matches: 706, Mismatches: 19, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
240 401 0.57
241 305 0.43
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
Found at i:26031522 original size:23 final size:23
Alignment explanation
Indices: 26031496--26031545 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
26031486 GTTCAAGTTT
*
26031496 ATTTAAAGGGCTGTAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
26031519 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
26031542 ATTT
1 ATTT
26031546 GATTAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:26033079 original size:6 final size:6
Alignment explanation
Indices: 26033068--26033096 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
26033058 TAAATTTTAT
26033068 ATAAAA ATAAAA ATAAAA AT-AAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
26033097 TACACTCGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:26035144 original size:42 final size:40
Alignment explanation
Indices: 26035084--26035173 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 40
26035074 AAATATTTGC
** *
26035084 GGCG-TTTTTATTTAAAACGCCGGTATAGGTCAACTTTTAGT
1 GGCGTTTTTTATTTAAAACGCCACTATAGCTC-A-TTTTAGT
*
26035125 GGCGTTTTTTA-TTACAAACGCCACTATAGCTCATTTTTGT
1 GGCGTTTTTTATTTA-AAACGCCACTATAGCTCATTTTAGT
26035165 GGCGTTTTT
1 GGCGTTTTT
26035174 GAAAAAACGC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
40 15 0.35
41 8 0.19
42 20 0.47
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (40 bp):
GGCGTTTTTTATTTAAAACGCCACTATAGCTCATTTTAGT
Found at i:26035373 original size:21 final size:21
Alignment explanation
Indices: 26035348--26035401 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
26035338 TTCCAAAATT
26035348 AAACTCTAAACCCCAAA-CTCC
1 AAACTCTAAACCCCAAACCT-C
26035369 AAACTCTAAACCCCAAACCTC
1 AAACTCTAAACCCCAAACCTC
*
26035390 AAATTCTAAACC
1 AAACTCTAAACC
26035402 ATAAACCCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (21 bp):
AAACTCTAAACCCCAAACCTC
Found at i:26035407 original size:21 final size:21
Alignment explanation
Indices: 26035348--26035408 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
26035338 TTCCAAAATT
*
26035348 AAACTCTAAACCCCAAA-CTCC
1 AAACTCTAAACCACAAACCT-C
*
26035369 AAACTCTAAACCCCAAACCTC
1 AAACTCTAAACCACAAACCTC
* *
26035390 AAATTCTAAACCATAAACC
1 AAACTCTAAACCACAAACC
26035409 CTAAGCCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 34 0.94
22 2 0.06
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.16
Consensus pattern (21 bp):
AAACTCTAAACCACAAACCTC
Found at i:26035421 original size:28 final size:28
Alignment explanation
Indices: 26035347--26035470 Score: 94
Period size: 28 Copynumber: 4.4 Consensus size: 28
26035337 ATTCCAAAAT
* *
26035347 TAAACTCTAAACCCCAAACTCCAAACTC-
1 TAAACCCTAAACCCCAAACTCTAAAC-CA
* * *
26035375 TAAACCCCAAACCTCAAATTCTAAACCA
1 TAAACCCTAAACCCCAAACTCTAAACCA
*
26035403 TAAACCCTAAGCCCCAAA-TCATAAACCA
1 TAAACCCTAAACCCCAAACTC-TAAACCA
* * *
26035431 CAAAACCC-AATCCACAAACTCTAAACCCCA
1 -TAAACCCTAAACCCCAAACTCTAAA--CCA
26035461 -AAACCCTAAA
1 TAAACCCTAAA
26035471 TCTCCATAAC
Statistics
Matches: 77, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
27 3 0.04
28 61 0.79
29 10 0.13
30 3 0.04
ACGTcount: A:0.47, C:0.38, G:0.01, T:0.15
Consensus pattern (28 bp):
TAAACCCTAAACCCCAAACTCTAAACCA
Found at i:26035527 original size:7 final size:7
Alignment explanation
Indices: 26035515--26035590 Score: 57
Period size: 7 Copynumber: 10.9 Consensus size: 7
26035505 CATGTATACT
26035515 CCTAAAC
1 CCTAAAC
26035522 CCTAAACC
1 CCTAAA-C
26035530 CCTAAAC
1 CCTAAAC
*
26035537 TCTAAA-
1 CCTAAAC
**
26035543 AGT-AAC
1 CCTAAAC
*
26035549 CATAAAC
1 CCTAAAC
*
26035556 TCTAAAC
1 CCTAAAC
*
26035563 CCTAAAT
1 CCTAAAC
26035570 CCTAAAC
1 CCTAAAC
*
26035577 ACTAACAC
1 CCTAA-AC
26035585 CCTAAA
1 CCTAAA
26035591 ATGCTAAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
5 2 0.04
6 2 0.04
7 36 0.68
8 13 0.25
ACGTcount: A:0.46, C:0.34, G:0.01, T:0.18
Consensus pattern (7 bp):
CCTAAAC
Found at i:26035714 original size:7 final size:7
Alignment explanation
Indices: 26035694--26035743 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
26035684 CTAACCCTAT
26035694 ACCATAA
1 ACCATAA
**
26035701 ATGATAA
1 ACCATAA
26035708 ACCATAA
1 ACCATAA
26035715 ACCATAA
1 ACCATAA
**
26035722 ACCCCAA
1 ACCATAA
*
26035729 ACCCTAA
1 ACCATAA
26035736 ACCATAA
1 ACCATAA
26035743 A
1 A
26035744 TACTAAACCC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.54, C:0.30, G:0.02, T:0.14
Consensus pattern (7 bp):
ACCATAA
Found at i:26035718 original size:21 final size:20
Alignment explanation
Indices: 26035686--26035759 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 20
26035676 CTAAGACCCT
*
26035686 AACCCTATACCATAAATGATA
1 AACCCTAAACCATAAAT-ATA
* ***
26035707 AACCATAAACCATAAACCCCA
1 AACCCTAAACCATAAA-TATA
26035728 AACCCTAAACCATAAATACTA
1 AACCCTAAACCATAAATA-TA
26035749 AACCCTAAACC
1 AACCCTAAACC
26035760 TTAATTAACC
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.50, C:0.32, G:0.01, T:0.16
Consensus pattern (20 bp):
AACCCTAAACCATAAATATA
Found at i:26035756 original size:7 final size:7
Alignment explanation
Indices: 26035705--26035759 Score: 56
Period size: 7 Copynumber: 7.9 Consensus size: 7
26035695 CCATAAATGA
*
26035705 TAAACCA
1 TAAACCC
*
26035712 TAAACCA
1 TAAACCC
26035719 TAAACCC
1 TAAACCC
*
26035726 CAAACCC
1 TAAACCC
*
26035733 TAAACCA
1 TAAACCC
**
26035740 TAAATAC
1 TAAACCC
26035747 TAAACCC
1 TAAACCC
26035754 TAAACC
1 TAAACC
26035760 TTAATTAACC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:26036170 original size:14 final size:13
Alignment explanation
Indices: 26036122--26036185 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 13
26036112 AAACCTCAAG
26036122 CCCTAAATCATAAA
1 CCCTAAATCAT-AA
* *
26036136 ACATAAATCATCAA
1 CCCTAAATCAT-AA
26036150 CCCTAAATCATAA
1 CCCTAAATCATAA
*
26036163 CCCTTAAACCCATAA
1 CCC-TAAA-TCATAA
26036178 CCCCTAAA
1 -CCCTAAA
26036186 CCTATAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
13 5 0.12
14 24 0.59
15 9 0.22
16 3 0.07
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (13 bp):
CCCTAAATCATAA
Found at i:26036178 original size:15 final size:15
Alignment explanation
Indices: 26036158--26036192 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26036148 AACCCTAAAT
*
26036158 CATAACCCTTAAACC
1 CATAACCCCTAAACC
26036173 CATAACCCCTAAACC
1 CATAACCCCTAAACC
*
26036188 TATAA
1 CATAA
26036193 AAATATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAACCCCTAAACC
Found at i:26036179 original size:28 final size:29
Alignment explanation
Indices: 26036110--26036194 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 29
26036100 CTTCTAAATT
*
26036110 ATAAACC-TCAAGCCCTAAATCATAAAAC
1 ATAAACCATCAACCCCTAAATCATAAAAC
* **
26036138 ATAAATCATCAA-CCCTAAATCATAACCC
1 ATAAACCATCAACCCCTAAATCATAAAAC
* *
26036166 TTAAACCCAT-AACCCCTAAACCTATAAAA
1 ATAAA-CCATCAACCCCTAAATC-ATAAAA
26036195 ATATTAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
28 26 0.58
29 15 0.33
30 4 0.09
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.20
Consensus pattern (29 bp):
ATAAACCATCAACCCCTAAATCATAAAAC
Found at i:26043080 original size:52 final size:48
Alignment explanation
Indices: 26043018--26043210 Score: 180
Period size: 47 Copynumber: 4.0 Consensus size: 48
26043008 GAAATGTGAT
*
26043018 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCTTC-GAG---TGTGATATGTGC
* *
26043070 TTCCGTATAAGACCATATCCGGGATATGG-TATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCT-TCGAGTGTGATATGTGC
* * * *
26043117 TACTGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCTTCGAGTGTGATATGTGC
* * * * *
26043163 ATCCGTGTAAGACCATTGCTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCTTCGAG--TGTGATATGTG
26043211 ACTATGTGCA
Statistics
Matches: 120, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
46 26 0.22
47 52 0.43
48 11 0.09
50 1 0.01
51 2 0.02
52 28 0.23
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCTTCGAGTGTGATATGTGC
Found at i:26043191 original size:93 final size:97
Alignment explanation
Indices: 26043022--26043229 Score: 221
Period size: 93 Copynumber: 2.1 Consensus size: 97
26043012 TGTGATTTCC
* * *
26043022 GTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGCTTCCGTATAAGACCATA
1 GTATAAGACCATAGCTGGGATATGGCATC-GAG--ATGTGATATGTGCATCCGTATAAGACCATA
*
26043087 TCCGGGATATGGTATCGG-TGTGATATGTG-CTACT
63 TCCGGGATATGGCATCGGATGTGATATGTGACTA-T
* *
26043121 GTATAAGACCATATCTGGGATATGGCATC-AG-TGTGATATGTG-ATCCGTGTAAGACCAT-TGC
1 GTATAAGACCATAGCTGGGATATGGCATCGAGATGTGATATGTGCATCCGTATAAGACCATAT-C
* * *
26043182 TGGGCTATGGCCTCGGTATGTGATATGTGACTAT
65 CGGGATATGGCATCGG-ATGTGATATGTGACTAT
**
26043216 GTGCAAGACCATAG
1 GTATAAGACCATAG
26043230 TTTTACTATG
Statistics
Matches: 93, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
92 1 0.01
93 27 0.29
94 11 0.12
95 23 0.25
96 3 0.03
97 2 0.02
99 26 0.28
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (97 bp):
GTATAAGACCATAGCTGGGATATGGCATCGAGATGTGATATGTGCATCCGTATAAGACCATATCC
GGGATATGGCATCGGATGTGATATGTGACTAT
Found at i:26046029 original size:10 final size:10
Alignment explanation
Indices: 26046014--26046065 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
26046004 TAAATTTAGG
26046014 ATTTATTTTT
1 ATTTATTTTT
*
26046024 ATTTATCTTT
1 ATTTATTTTT
* *
26046034 AATTATCTTT
1 ATTTATTTTT
*
26046044 ATTTATTTGT
1 ATTTATTTTT
26046054 ATTTATCTTTT
1 ATTTAT-TTTT
26046065 A
1 A
26046066 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:26049762 original size:5 final size:5
Alignment explanation
Indices: 26049754--26049859 Score: 81
Period size: 5 Copynumber: 20.6 Consensus size: 5
26049744 CAACCCAACC
* * * * *
26049754 TTTAT TTTAT TTTAC TTTAC TTAATT TTTAT TATT-T ATTAT TTTAT TTCAT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT T-TTAT TTTAT TTTAT TTTAT
* * *
26049805 TTTAT TAGTATT TTTAT TTTAT TTTAC TTTAT TTTAT TATT-T ATTAT
1 TTTAT T-TTA-T TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT TTTAT
26049852 TTTAT TTT
1 TTTAT TTT
26049860 TGGATATTAA
Statistics
Matches: 80, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
4 4 0.05
5 63 0.79
6 11 0.14
7 2 0.03
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.73
Consensus pattern (5 bp):
TTTAT
Found at i:26049825 original size:27 final size:30
Alignment explanation
Indices: 26049785--26049858 Score: 100
Period size: 27 Copynumber: 2.6 Consensus size: 30
26049775 TAATTTTTAT
26049785 TATTTATTATTTTATTTCA-TTT-TATTAG
1 TATTTATTATTTTATTTCACTTTATATTAG
* * *
26049813 TATTT-TTATTTTATTTTACTTTATTTTAT
1 TATTTATTATTTTATTTCACTTTATATTAG
26049842 TATTTATTATTTTATTT
1 TATTTATTATTTTATTT
26049859 TTGGATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
27 12 0.30
28 8 0.20
29 9 0.22
30 11 0.28
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (30 bp):
TATTTATTATTTTATTTCACTTTATATTAG
Found at i:26049884 original size:57 final size:57
Alignment explanation
Indices: 26049759--26049887 Score: 136
Period size: 57 Copynumber: 2.2 Consensus size: 57
26049749 CAACCTTTAT
* * * * **
26049759 TTTATTTTACTTTACTTAATTTTTATTATTTATTATTTTATTTCATTTTATTAGTATT
1 TTTATCTTATTTTACTTAATTTTTATTATTTATTATTTTATTT-ATTATATTAATAAA
* *
26049817 TTTATTTTATTTTACTTTA-TTTTATTATTTATTATTTTATTT-TTGGATATTAATAAA
1 TTTATCTTATTTTACTTAATTTTTATTATTTATTATTTTATTTATT--ATATTAATAAA
*
26049874 TTTCTCTTATTTTA
1 TTTATCTTATTTTA
26049888 TCTAGGTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
55 2 0.03
57 42 0.69
58 17 0.28
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (57 bp):
TTTATCTTATTTTACTTAATTTTTATTATTTATTATTTTATTTATTATATTAATAAA
Found at i:26051830 original size:10 final size:10
Alignment explanation
Indices: 26051812--26051845 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26051802 AATTTAGAAT
*
26051812 TTATTTTTAA
1 TTATCTTTAA
26051822 TTATCTTTAA
1 TTATCTTTAA
*
26051832 TTATCTTTAT
1 TTATCTTTAA
26051842 TTAT
1 TTAT
26051846 TTGCATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:26055087 original size:36 final size:36
Alignment explanation
Indices: 26055046--26055119 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
26055036 TGATTTTTAG
26055046 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
1 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
*
26055082 AATTTCAACTAAAAATGGTTGTGACAACCCCAAATT
1 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
26055118 AA
1 AA
26055120 CAAATGATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (36 bp):
AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
Found at i:26056368 original size:9 final size:9
Alignment explanation
Indices: 26056350--26056417 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
26056340 TCAACAAAAT
26056350 AATT-TAAA
1 AATTATAAA
26056358 AATTATAAA
1 AATTATAAA
*
26056367 AA-TAGAAA
1 AATTATAAA
*
26056375 ATAATATAAA
1 A-ATTATAAA
*
26056385 AATTCAAAAAA
1 AATT--ATAAA
26056396 AATTATAAA
1 AATTATAAA
* *
26056405 AAGTATAAG
1 AATTATAAA
26056414 AATT
1 AATT
26056418 CAAAAAAGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
8 10 0.21
9 23 0.49
10 6 0.13
11 8 0.17
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (9 bp):
AATTATAAA
Found at i:26057097 original size:31 final size:31
Alignment explanation
Indices: 26057062--26057142 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
26057052 TATTTGAGAA
*
26057062 GCTCTTATTTGAACACTTTTAAAAAGATTTG
1 GCTCTTATTTGAACACTTTCAAAAAGATTTG
* *
26057093 GCTCTTATTAGAACACTTTCAAAAAGTTTTG
1 GCTCTTATTTGAACACTTTCAAAAAGATTTG
* *
26057124 GCTCGTATTTGAGCACTTT
1 GCTCTTATTTGAACACTTT
26057143 GAAAGTTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (31 bp):
GCTCTTATTTGAACACTTTCAAAAAGATTTG
Found at i:26058772 original size:12 final size:12
Alignment explanation
Indices: 26058755--26058800 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
26058745 AACTTTTTAT
26058755 ATTTATTTATTC
1 ATTTATTTATTC
26058767 ATTTATTTATT-
1 ATTTATTTATTC
*
26058778 ATTTCTTTA-TC
1 ATTTATTTATTC
*
26058789 CTTTATTATATT
1 ATTTATT-TATT
26058801 TAAAATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 1 0.04
11 13 0.46
12 13 0.46
13 1 0.04
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTTATTTATTC
Found at i:26058786 original size:23 final size:22
Alignment explanation
Indices: 26058750--26058800 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
26058740 TCATTAACTT
26058750 TTTA-TATTTATTTATTCATTTA
1 TTTATTATTTATTTA-TCATTTA
* *
26058772 TTTATTATTTCTTTATCCTTTA
1 TTTATTATTTATTTATCATTTA
26058794 TTATATT
1 TT-TATT
26058801 TAAAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTATTATTTATTTATCATTTA
Found at i:26059005 original size:13 final size:14
Alignment explanation
Indices: 26058972--26059016 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
26058962 TGTATTTATT
26058972 TTTATTT-TATCAA
1 TTTATTTATATCAA
*
26058985 TCTA-TTATATC-A
1 TTTATTTATATCAA
26058997 TTTATTTATA-CAA
1 TTTATTTATATCAA
26059010 TTTATTT
1 TTTATTT
26059017 TATTTTATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTATTTATATCAA
Found at i:26063310 original size:17 final size:17
Alignment explanation
Indices: 26063290--26063323 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26063280 AAATAGATTT
26063290 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
26063307 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
26063324 ACTTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:26064048 original size:18 final size:17
Alignment explanation
Indices: 26064010--26064048 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
26064000 GGTTTGAAAA
26064010 TTTTAATTAATTAAATTT
1 TTTTAATTAA-TAAATTT
26064028 TTTTAATTAA-AAATTT
1 TTTTAATTAATAAATTT
26064044 ATTTT
1 -TTTT
26064049 CATCCCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 4 0.20
18 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAATTAATAAATTT
Found at i:26067292 original size:4 final size:4
Alignment explanation
Indices: 26067278--26067311 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
26067268 GTCACATAGC
*
26067278 CAGA TAGA CAGA CAGA CAGA CAGA CAGA CAGA CA
1 CAGA CAGA CAGA CAGA CAGA CAGA CAGA CAGA CA
26067312 CAAAATTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.24, G:0.24, T:0.03
Consensus pattern (4 bp):
CAGA
Found at i:26070528 original size:5 final size:5
Alignment explanation
Indices: 26070518--26070551 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
26070508 GAGATAGATG
26070518 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGG
1 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGG
26070552 GGAGAGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.62, T:0.18
Consensus pattern (5 bp):
GAGGT
Found at i:26071079 original size:20 final size:20
Alignment explanation
Indices: 26071033--26071080 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
26071023 TAATTTAAAC
26071033 TAAAAATGTTACTAAATTTA
1 TAAAAATGTTACTAAATTTA
* *
26071053 CATAAAATTTTA-TAAATTCTA
1 TA-AAAATGTTACTAAATT-TA
26071074 TAAAAAT
1 TAAAAAT
26071081 AAATCAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAAAATGTTACTAAATTTA
Found at i:26071763 original size:30 final size:30
Alignment explanation
Indices: 26071729--26071789 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
26071719 CATGGATAGG
26071729 ATTGATAGATTAAGAGCTTACTTAACTACA
1 ATTGATAGATTAAGAGCTTACTTAACTACA
*
26071759 ATTGATAGATTAAGAGCTTACTTAAGTACA
1 ATTGATAGATTAAGAGCTTACTTAACTACA
26071789 A
1 A
26071790 AAATAACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (30 bp):
ATTGATAGATTAAGAGCTTACTTAACTACA
Found at i:26074063 original size:22 final size:22
Alignment explanation
Indices: 26074030--26074081 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
26074020 GATTTAGGAG
* * *
26074030 TAATATAA-AATGGTAAAATTT
1 TAATTTAATAATGATAAAATTA
26074051 TAATTTAATAATGATAAAATTA
1 TAATTTAATAATGATAAAATTA
*
26074073 TATTTTAAT
1 TAATTTAAT
26074082 TTTTTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (22 bp):
TAATTTAATAATGATAAAATTA
Found at i:26074088 original size:30 final size:30
Alignment explanation
Indices: 26074073--26074130 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
26074063 GATAAAATTA
26074073 TATTTTAATTTTTTAAAAATAATAAAAAAT
1 TATTTTAATTTTTTAAAAATAATAAAAAAT
*
26074103 TATTTTAATTTTTTAAAAATTATAAAAA
1 TATTTTAATTTTTTAAAAATAATAAAAA
26074131 TAATAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
TATTTTAATTTTTTAAAAATAATAAAAAAT
Found at i:26074129 original size:29 final size:30
Alignment explanation
Indices: 26074054--26074132 Score: 106
Period size: 30 Copynumber: 2.6 Consensus size: 30
26074044 AAAATTTTAA
* * *
26074054 TTTAATAATGATAAAATTATATTTTAATTT
1 TTTAAAAATAATAAAAATATATTTTAATTT
26074084 TTTAAAAATAATAAAAA-ATTATTTTAATTT
1 TTTAAAAATAATAAAAATA-TATTTTAATTT
*
26074114 TTTAAAAATTATAAAAATA
1 TTTAAAAATAATAAAAATA
26074133 ATAAATAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (30 bp):
TTTAAAAATAATAAAAATATATTTTAATTT
Found at i:26074142 original size:30 final size:30
Alignment explanation
Indices: 26074078--26074142 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
26074068 AATTATATTT
* **
26074078 TAATTTTTTAAAAATAATAAAAAATTATTT
1 TAATTTTTTAAAAATAATAAAAAAATATAA
*
26074108 TAATTTTTTAAAAATTATAAAAATAATA-AA
1 TAATTTTTTAAAAATAATAAAAA-AATATAA
26074138 TAATT
1 TAATT
26074143 AAAATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TAATTTTTTAAAAATAATAAAAAAATATAA
Found at i:26075636 original size:56 final size:56
Alignment explanation
Indices: 26075557--26075664 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
26075547 CGCCCTTGCC
* *
26075557 TCGAGTCCCTCGCCACCTTGCTAAGTGCCAACACCACCTAAGCACTTCGCCCAGAG
1 TCGAGTCCCTCACCACCTCGCTAAGTGCCAACACCACCTAAGCACTTCGCCCAGAG
* * * **
26075613 TCGAGTCCTTCACCACCTCGCTAAGTTCTAACACCACCTGGGCACTTCGCCC
1 TCGAGTCCCTCACCACCTCGCTAAGTGCCAACACCACCTAAGCACTTCGCCC
26075665 TGAACCCCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.21, C:0.42, G:0.17, T:0.20
Consensus pattern (56 bp):
TCGAGTCCCTCACCACCTCGCTAAGTGCCAACACCACCTAAGCACTTCGCCCAGAG
Found at i:26077263 original size:1 final size:1
Alignment explanation
Indices: 26077257--26077281 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
26077247 TCACTTCCTT
26077257 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
26077282 GAGTCCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26078761 original size:21 final size:21
Alignment explanation
Indices: 26078737--26078779 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26078727 AAATTATATT
* *
26078737 AATAATGTTTTATTAAATGAA
1 AATAATCTTTTAGTAAATGAA
*
26078758 AATAATCTTTTAGTCAATGAA
1 AATAATCTTTTAGTAAATGAA
26078779 A
1 A
26078780 TTACATATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATCTTTTAGTAAATGAA
Found at i:26079446 original size:12 final size:11
Alignment explanation
Indices: 26079427--26079469 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
26079417 ATTAATTATT
*
26079427 TTTAAAAAAAA
1 TTTAAAAAATA
26079438 TTATAAAAAATA
1 TT-TAAAAAATA
*
26079450 TTTTATAAAATA
1 -TTTAAAAAATA
26079462 TTTAAAAA
1 TTTAAAAA
26079470 TATAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 9 0.33
12 16 0.59
13 2 0.07
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TTTAAAAAATA
Found at i:26083435 original size:5 final size:5
Alignment explanation
Indices: 26083425--26083472 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
26083415 GTAATTGTTT
26083425 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
26083473 AACAAATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:26083547 original size:13 final size:11
Alignment explanation
Indices: 26083521--26083596 Score: 55
Period size: 12 Copynumber: 6.4 Consensus size: 11
26083511 TAAATGAAAC
26083521 AAAAAGAATAGA
1 AAAAAGAA-AGA
26083533 AAAAGAGAAAG-
1 AAAA-AGAAAGA
*
26083544 GAAAAGAAACGA
1 AAAAAGAAA-GA
*
26083556 AACAAAGAAGGGA
1 AA-AAAGAA-AGA
26083569 AAGAAAGAAAGA
1 AA-AAAGAAAGA
*
26083581 AAAAGGGAAAGA
1 AAAA-AGAAAGA
26083593 AAAA
1 AAAA
26083597 GAAGGATAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
10 5 0.10
11 6 0.12
12 21 0.40
13 20 0.38
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:26084309 original size:17 final size:17
Alignment explanation
Indices: 26084280--26084323 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
26084270 TGTGTGATTA
26084280 ATTGAATTGATATGAAT
1 ATTGAATTGATATGAAT
*
26084297 ATTG-ATTGTATATGAAA
1 ATTGAATTG-ATATGAAT
*
26084314 AGTGAATTGA
1 ATTGAATTGA
26084324 AGAACCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 4 0.17
17 15 0.65
18 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (17 bp):
ATTGAATTGATATGAAT
Found at i:26093791 original size:18 final size:17
Alignment explanation
Indices: 26093758--26093793 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26093748 ACTAAATTGG
26093758 AAATGAGAAAAATTAAT
1 AAATGAGAAAAATTAAT
*
26093775 AAATGATAAATAATTAAT
1 AAATGAGAAA-AATTAAT
26093793 A
1 A
26093794 GGAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (17 bp):
AAATGAGAAAAATTAAT
Found at i:26101515 original size:17 final size:17
Alignment explanation
Indices: 26101478--26101521 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
26101468 GTAAAAAAGA
*
26101478 AATATAAAAAAAATAAT
1 AATATAAAAAAAATAAC
* *
26101495 AATATAAAAAATATAGC
1 AATATAAAAAAAATAAC
26101512 AATAGTAAAA
1 AATA-TAAAA
26101522 TTATGATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (17 bp):
AATATAAAAAAAATAAC
Found at i:26101597 original size:22 final size:21
Alignment explanation
Indices: 26101565--26101633 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 21
26101555 ATAATACTTA
26101565 AAATATAATAATAAAAAAAATAT
1 AAATA-AATAATAAAAAAAA-AT
* *
26101588 AAATAAATAAGAAATAAAAACT
1 AAATAAATAATAAA-AAAAAAT
*
26101610 AGATAAATAATAAGAAAATAAAT
1 AAATAAATAATAA-AAAA-AAAT
26101633 A
1 A
26101634 GATGAAAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
22 23 0.61
23 15 0.39
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (21 bp):
AAATAAATAATAAAAAAAAAT
Found at i:26101651 original size:3 final size:3
Alignment explanation
Indices: 26101643--26101803 Score: 57
Period size: 3 Copynumber: 55.0 Consensus size: 3
26101633 AGATGAAAAT
* * * * *
26101643 ATA ATA ATA GTA ATA AT- ACA ATA GTA GTA ATA ATA AAA AGTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
* * * * * * *
26101688 ATA AT- ATA TTAA ATA GTA A-A AAA ATA ATA GTA ACA GTA AT- TTA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
26101731 A-A AAA ATG ATA ATA GTA ATA ATC ATA ATG ATA ATA AT- ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * *
26101775 ATA GTA A-A ATA ATG ATA GTA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26101804 TATATTAAAT
Statistics
Matches: 112, Mismatches: 36, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
2 12 0.11
3 94 0.84
4 6 0.05
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:26101689 original size:16 final size:17
Alignment explanation
Indices: 26101653--26101693 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
26101643 ATAATAATAG
* *
26101653 TAATAATACAATAGTAG
1 TAATAATACAAAAGTAA
26101670 TAATAATA-AAAAGTAA
1 TAATAATACAAAAGTAA
26101686 TAATAATA
1 TAATAATA
26101694 TATTAAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (17 bp):
TAATAATACAAAAGTAA
Found at i:26105191 original size:20 final size:21
Alignment explanation
Indices: 26105166--26105218 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 21
26105156 AAAAAAATGA
26105166 ATTTTGGAATTTTTATAAA-T
1 ATTTTGGAATTTTTATAAATT
26105186 ATTTT-GAA-TTTTATAAATT
1 ATTTTGGAATTTTTATAAATT
*
26105205 ATTTTGCAATTTTT
1 ATTTTGGAATTTTT
26105219 GTTGATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 9 0.31
19 9 0.31
20 7 0.24
21 4 0.14
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTTTGGAATTTTTATAAATT
Found at i:26105196 original size:19 final size:20
Alignment explanation
Indices: 26105166--26105218 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 20
26105156 AAAAAAATGA
26105166 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
26105186 ATTTTGAA-TTTTATAAATT
1 ATTTTGAATTTTTATAAATT
26105205 ATTTTGCAATTTTT
1 ATTTTG-AATTTTT
26105219 GTTGATAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.30
19 10 0.33
20 7 0.23
21 4 0.13
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:26105199 original size:18 final size:19
Alignment explanation
Indices: 26105166--26105217 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
26105156 AAAAAAATGA
26105166 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAA-TTTTATAAATT
26105186 ATTTTGAATTTTATAAATT
1 ATTTTGAATTTTATAAATT
26105205 ATTTTGCAATTTT
1 ATTTTG-AATTTT
26105218 TGTTGATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.30
19 10 0.33
20 11 0.37
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTATAAATT
Found at i:26106857 original size:40 final size:40
Alignment explanation
Indices: 26106761--26106842 Score: 125
Period size: 41 Copynumber: 2.1 Consensus size: 40
26106751 GCGTACCTGG
*
26106761 GAAAAAAA-TAAA-AAAAACAGAATTAAAAGTTTTGATAT
1 GAAAAAAACAAAATAAAAACAGAATTAAAAGTTTTGATAT
26106799 GAAAAAAAACAAAATAAAAACAGAATTAAAAGTTTTGAT-T
1 G-AAAAAAACAAAATAAAAACAGAATTAAAAGTTTTGATAT
26106839 GAAA
1 GAAA
26106843 TTTCGAAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
38 1 0.03
39 10 0.25
40 5 0.12
41 24 0.60
ACGTcount: A:0.63, C:0.04, G:0.11, T:0.22
Consensus pattern (40 bp):
GAAAAAAACAAAATAAAAACAGAATTAAAAGTTTTGATAT
Found at i:26109032 original size:29 final size:31
Alignment explanation
Indices: 26108984--26109047 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
26108974 TTTATAATTA
*
26108984 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
26109015 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
26109044 TTTA
1 TTTA
26109048 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:26109036 original size:8 final size:8
Alignment explanation
Indices: 26109025--26109049 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26109015 TTTAATAAGA
26109025 TATTTTAT
1 TATTTTAT
26109033 TATTTTAT
1 TATTTTAT
26109041 TATTTTAT
1 TATTTTAT
26109049 T
1 T
26109050 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:26109070 original size:2 final size:2
Alignment explanation
Indices: 26109065--26109098 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26109055 TATATATATA
26109065 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
26109099 GAAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:26109349 original size:36 final size:36
Alignment explanation
Indices: 26109308--26109380 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
26109298 ATCAAGTTAG
26109308 ATTCAAGAAATAGAAGCTGGAGGAGAGAGAAAATCA
1 ATTCAAGAAATAGAAGCTGGAGGAGAGAGAAAATCA
26109344 ATTCAAGAAATAGAAGCTGGAGGAGAGAGAAAATCA
1 ATTCAAGAAATAGAAGCTGGAGGAGAGAGAAAATCA
26109380 A
1 A
26109381 GTTAAAAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.27, T:0.14
Consensus pattern (36 bp):
ATTCAAGAAATAGAAGCTGGAGGAGAGAGAAAATCA
Found at i:26112926 original size:46 final size:45
Alignment explanation
Indices: 26112870--26113036 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
26112860 TGGTATGTGT
26112870 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATTATGGGA
* * *
26112916 GCCAGTGTAAGACATGTCTGAGACCTGCATCGG--TATTGA-GACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTATT-ATG--G-GA
* * **
26112962 GCTAGTGTAAGACATGCCTAGGACATGCATCGGCCTCGAGTTATACGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT--A-TTATGGGA
*
26113010 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
26113037 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 1 0.01
46 60 0.61
48 27 0.28
50 2 0.02
51 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTATTATGGGA
Found at i:26113120 original size:49 final size:49
Alignment explanation
Indices: 26113056--26113186 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
26113046 TATTGTGTGT
* * * *
26113056 CAGTGTAAGACCTGTCTGAGACATGGCATTGACAC-CAATAGATGAAAGC
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAAGC
* * * * *
26113105 CATTGTAAAAACTGTCTGGGACACGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
* * *
26113154 CAGTGTAAGACCTGTTTGGGACATGGCATCGAC
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGAC
26113187 TTTGATGTGC
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 66 0.99
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (49 bp):
CAGTGTAAAAACTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
Found at i:26116428 original size:30 final size:30
Alignment explanation
Indices: 26116394--26116450 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
26116384 GCCTAGGGGT
* *
26116394 AAAATTGTAATTTTTAC-AAAGTTTAAGGGC
1 AAAATAGTAA-TTTTACTAAAGTATAAGGGC
*
26116424 AAAATAGTCATTTTACTAAAGTATAAG
1 AAAATAGTAATTTTACTAAAGTATAAG
26116451 TTTTAAGTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 6 0.26
30 17 0.74
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (30 bp):
AAAATAGTAATTTTACTAAAGTATAAGGGC
Found at i:26119640 original size:21 final size:20
Alignment explanation
Indices: 26119616--26119655 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26119606 ATATTCAAGT
26119616 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
*
26119637 TCCACATGGGCGTGTGCCC
1 TCCACACGGGCGTGTGCCC
26119656 TGTGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:26121874 original size:5 final size:5
Alignment explanation
Indices: 26121864--26121920 Score: 57
Period size: 5 Copynumber: 11.8 Consensus size: 5
26121854 TCAACATCTA
* * *
26121864 AAAAT AAAAT AATAA- ATAAT AAAAT AAAGT ACAAT AAAAT AAAAT -AAA-
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
26121912 AAAAT AAAA
1 AAAAT AAAA
26121921 ATTGGGTTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 8 0.19
5 32 0.76
6 2 0.05
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26130156 original size:16 final size:16
Alignment explanation
Indices: 26130135--26130165 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26130125 GTAACGCCCC
*
26130135 AAAAATCTCGAAATCT
1 AAAAATCCCGAAATCT
26130151 AAAAATCCCGAAATC
1 AAAAATCCCGAAATC
26130166 CCAAATTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.23, G:0.06, T:0.19
Consensus pattern (16 bp):
AAAAATCCCGAAATCT
Found at i:26131560 original size:29 final size:29
Alignment explanation
Indices: 26131506--26131561 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
26131496 AATGTGACTG
* *
26131506 GGCCTAACGGGTCATATAAGTGTGATTTA
1 GGCCTAACGGGCCATATAAGTATGATTTA
*
26131535 GGCCTAATGGGCCATATGAA-TATGATT
1 GGCCTAACGGGCCATAT-AAGTATGATT
26131562 GGGCTTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
GGCCTAACGGGCCATATAAGTATGATTTA
Found at i:26134190 original size:18 final size:20
Alignment explanation
Indices: 26134163--26134204 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 20
26134153 GGGTCAAGAA
*
26134163 GGTGCTCAGC-CT-CCAAGG
1 GGTGCACAGCGCTACCAAGG
26134181 GGTGCACAGCTGCTACCAAGG
1 GGTGCACAGC-GCTACCAAGG
26134202 GGT
1 GGT
26134205 CGTGGACAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
20 2 0.10
21 9 0.45
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.17
Consensus pattern (20 bp):
GGTGCACAGCGCTACCAAGG
Found at i:26138792 original size:8 final size:8
Alignment explanation
Indices: 26138779--26138823 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
26138769 AGGAAAAAGT
26138779 CGAAATGC
1 CGAAATGC
26138787 CGAAATGC
1 CGAAATGC
* *
26138795 CGAAAAGT
1 CGAAATGC
26138803 CGAAATGC
1 CGAAATGC
* *
26138811 TGAAAAGC
1 CGAAATGC
26138819 CGAAA
1 CGAAA
26138824 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (8 bp):
CGAAATGC
Found at i:26138804 original size:24 final size:24
Alignment explanation
Indices: 26138773--26138823 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
26138763 ATGTATAGGA
*
26138773 AAAAGTCGAAATGCCGAAATGCCG
1 AAAAGTCGAAATGCCGAAAAGCCG
*
26138797 AAAAGTCGAAATGCTGAAAAGCCG
1 AAAAGTCGAAATGCCGAAAAGCCG
26138821 AAA
1 AAA
26138824 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (24 bp):
AAAAGTCGAAATGCCGAAAAGCCG
Found at i:26138806 original size:16 final size:16
Alignment explanation
Indices: 26138779--26138823 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
26138769 AGGAAAAAGT
*
26138779 CGAAATGCCGAAATGC
1 CGAAAAGCCGAAATGC
*
26138795 CGAAAAGTCGAAATGC
1 CGAAAAGCCGAAATGC
*
26138811 TGAAAAGCCGAAA
1 CGAAAAGCCGAAA
26138824 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (16 bp):
CGAAAAGCCGAAATGC
Found at i:26139082 original size:29 final size:29
Alignment explanation
Indices: 26139049--26139133 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
26139039 AATATGACTG
*
26139049 GGCCTAACGGGCCATATAAATGTGATTTA
1 GGCCTAATGGGCCATATAAATGTGATTTA
* * * *
26139078 GGCCTAATGGGCCATATACAGGTAATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTA
* *
26139107 GGCCTAATGGGCCATATGAATATGATT
1 GGCCTAATGGGCCATATAAATGTGATT
26139134 GGGCTTAGTG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTA
Found at i:26154939 original size:127 final size:127
Alignment explanation
Indices: 26154783--26155234 Score: 532
Period size: 127 Copynumber: 3.5 Consensus size: 127
26154773 AGTCCAACGA
* * * * * *
26154783 AAAACCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGC
1 AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACTAAACATTGCCTTGT
* * * * * * *
26154848 TTTAGCATTTAGAAAACACGAGTAAAATTCTAAAGGAAAATTCAATCATTTTGAACAAACCG
66 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACCG
* * * * * *
26154910 AAAATCGTAACCCAGCACGATTGGACACGATTCCCCGCATTTCCAAACACTAAATATTGCTTTGT
1 AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACTAAACATTGCCTTGT
* *
26154975 TTTAGTATTTGGAAAACACAAGTGAAATTTTAAAGGAATATTCGATTATTTTGAACAAACCG
66 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACCG
* * * * * * *
26155037 GAAATCGAAACCCAGCACGATTGGACACTATTCC-CCACATTTCCAAACACTGAATATTTCCTTG
1 AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGA-ATTTCCAAACACTAAACATTGCCTTG
* *
26155101 TTTTAGTATTTGGAAAACACGAGTGAAATTATAAAAGGAATATTCGGTTATTTTGAACGAA-CG
65 TTTTAGTATTTGGAAAACACGAGTGAAATTAT-AAAGGAATATTCGATTATTTTGAACAAACCG
* * * *
26155164 AGAAATCAAAACCTAGTACGATAGGGCACGATTCCTCGAATTTCCAAACA-TCAAACATTGCCTT
1 A-AAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACT-AAACATTGCCTT
26155228 CGTTTTA
64 -GTTTTA
26155235 AAGAATTTTC
Statistics
Matches: 276, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
126 1 0.00
127 194 0.70
128 73 0.26
129 8 0.03
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (127 bp):
AAAATCGAAACCCAGCACGATAGGACACGATTCCTCGAATTTCCAAACACTAAACATTGCCTTGT
TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACCG
Found at i:26157553 original size:22 final size:24
Alignment explanation
Indices: 26157525--26157569 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
26157515 TTGCTTATAG
26157525 GTACGGGG-TGTGCG-TGGCGTAT
1 GTACGGGGCTGTGCGTTGGCGTAT
26157547 GTACGGGGCTGTGCGTTGGCGTA
1 GTACGGGGCTGTGCGTTGGCGTA
26157570 CGGAAGGGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 6 0.29
24 7 0.33
ACGTcount: A:0.09, C:0.16, G:0.49, T:0.27
Consensus pattern (24 bp):
GTACGGGGCTGTGCGTTGGCGTAT
Found at i:26160040 original size:10 final size:10
Alignment explanation
Indices: 26160019--26160070 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
26160009 AATTAAATTC
26160019 TAAAAGATAAA
1 TAAAA-ATAAA
26160030 TAAAAATAAA
1 TAAAAATAAA
*
26160040 TAAAAATAAT
1 TAAAAATAAA
*
26160050 TAAATATAAA
1 TAAAAATAAA
*
26160060 TGAAAATAAA
1 TAAAAATAAA
26160070 T
1 T
26160071 CCTAAAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
10 31 0.86
11 5 0.14
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:26170781 original size:16 final size:16
Alignment explanation
Indices: 26170757--26170790 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26170747 AATGCCGAAG
26170757 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACT
*
26170773 TTTCGGCTTTTCGACT
1 TTTCAGCTTTTCGACT
26170789 TT
1 TT
26170791 CGCCGATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.15, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGACT
Found at i:26178262 original size:16 final size:16
Alignment explanation
Indices: 26178241--26178282 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
26178231 AGACAACCCA
26178241 ATTTTTATTTT-TCTTT
1 ATTTTTATTTTAT-TTT
26178257 ATTTTTATTTTATTTT
1 ATTTTTATTTTATTTT
26178273 ATTATTTATT
1 ATT-TTTATT
26178283 ACTTTATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (16 bp):
ATTTTTATTTTATTTT
Found at i:26178279 original size:8 final size:8
Alignment explanation
Indices: 26178270--26178298 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
26178260 TTTATTTTAT
26178270 TTTATTA-
1 TTTATTAC
26178277 TTTATTAC
1 TTTATTAC
26178285 TTTATTAC
1 TTTATTAC
26178293 TTTATT
1 TTTATT
26178299 TGTTTGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTATTAC
Found at i:26178297 original size:20 final size:18
Alignment explanation
Indices: 26178241--26178299 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 18
26178231 AGACAACCCA
26178241 ATTTTTA-TTT-TTCTTT
1 ATTTTTACTTTATTCTTT
* *
26178257 ATTTTTATTTTATTTTATT
1 ATTTTTACTTTATTCT-TT
26178276 ATTTATTACTTTATTACTTT
1 ATTT-TTACTTTATT-CTTT
26178296 ATTT
1 ATTT
26178300 GTTTGGTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 7 0.20
17 3 0.09
18 3 0.09
19 6 0.17
20 15 0.43
21 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (18 bp):
ATTTTTACTTTATTCTTT
Found at i:26180654 original size:42 final size:42
Alignment explanation
Indices: 26180607--26180715 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
26180597 TAAGATTCCT
* * *
26180607 TATAAGACCATATCCGAGATATGGCCTCGATATG-TGATTTCG
1 TATAAGACCATATCAGGGATATGGCCTCGATATGAT-ATTTCA
* * * *
26180649 TATAAGACCATGTCAGGGACATGACGTCGATATGATATTTCA
1 TATAAGACCATATCAGGGATATGGCCTCGATATGATATTTCA
* *
26180691 TGTAAGACCATATCGGGGATATGGC
1 TATAAGACCATATCAGGGATATGGC
26180716 ATTGAAACGA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
TATAAGACCATATCAGGGATATGGCCTCGATATGATATTTCA
Found at i:26183453 original size:49 final size:49
Alignment explanation
Indices: 26183380--26183494 Score: 151
Period size: 49 Copynumber: 2.3 Consensus size: 49
26183370 TGTTGTGTGT
* * * *
26183380 CAGTGTAAGACCTGCCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGAACATGGCATCGAC-CTCGATAGATGAAAGC
* * *
26183429 CAGTGTAAGAGCTGTCTAGAACATGGCATTGACCTCGATATATGAAAGC
1 CAGTGTAAGACCTGTCTAGAACATGGCATCGACCTCGATAGATGAAAGC
26183478 CAGTGTAAGACCTGTCT
1 CAGTGTAAGACCTGTCT
26183495 GGGAGACGAC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 1 0.02
49 56 0.98
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGAACATGGCATCGACCTCGATAGATGAAAGC
Found at i:26206164 original size:116 final size:117
Alignment explanation
Indices: 26206020--26206246 Score: 286
Period size: 117 Copynumber: 1.9 Consensus size: 117
26206010 GAGTTTTTAA
26206020 AACCCACACGGCCCGGACACACGAGCGTG-CCCTTGGCCATAT-GAAATTTCAGACTTAGTTTTA
1 AACCCACACGGCCCGGACACACGAGCGTGTCCC-TGGCCATATGGAAATTTCAGACTTAGTTTTA
*
26206083 AA-CATTTTAAAGAAATTGACA-TCGAGTTACACGGCCTGG-CGACACGGCCGTGT
65 AATCATTTTAAA-AAATCGACAGT-GAGTTACACGGCCTGGAC-ACACGGCCGTGT
* * * * * *
26206136 AACCCACATGGCCTGGACACAC-AGGCGTGTCCCTGGCCGTGTGGAATTTTTAGACTTAGTTTTA
1 AACCCACACGGCCCGGACACACGA-GCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTA
**
26206200 AATTTTTTTAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGG
65 AATCATTTTAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGG
26206247 GCTTGTCCTT
Statistics
Matches: 96, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
115 1 0.01
116 32 0.33
117 54 0.56
118 9 0.09
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (117 bp):
AACCCACACGGCCCGGACACACGAGCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTAA
ATCATTTTAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGGCCGTGT
Found at i:26207260 original size:18 final size:18
Alignment explanation
Indices: 26207239--26207297 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
26207229 ACTATTATTA
26207239 TTATTTATTTTTTCTTAT
1 TTATTTATTTTTTCTTAT
*
26207257 TTATTTATTTATTC-TA-
1 TTATTTATTTTTTCTTAT
* *
26207273 TTATTTTATTTCTTTATTGT
1 TTA-TTTATTT-TTTCTTAT
26207293 TTATT
1 TTATT
26207298 AGTATTATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
16 3 0.09
17 9 0.27
18 15 0.45
19 3 0.09
20 3 0.09
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.75
Consensus pattern (18 bp):
TTATTTATTTTTTCTTAT
Found at i:26207268 original size:29 final size:28
Alignment explanation
Indices: 26207231--26207309 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
26207221 ATATTATTAC
26207231 TATTA-TTATTAT-TTATTTTTTCTTATT
1 TATTATTTATTATATTATTTTTT-TTATT
* * *
26207258 TATTTATTTATTCTATTATTTTATTTCTT
1 TA-TTATTTATTATATTATTTTTTTTATT
*
26207287 TATTGTTTATTAGTATTATTTTT
1 TATTATTTATTA-TATTATTTTT
26207310 CAGGTTCTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
27 2 0.05
28 11 0.26
29 21 0.50
30 8 0.19
ACGTcount: A:0.22, C:0.04, G:0.03, T:0.72
Consensus pattern (28 bp):
TATTATTTATTATATTATTTTTTTTATT
Found at i:26207488 original size:22 final size:22
Alignment explanation
Indices: 26207463--26207532 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
26207453 TGTCATGATC
26207463 TGCTTTTATTGTTTAATCATAT
1 TGCTTTTATTGTTTAATCATAT
* * *
26207485 TGC-TTTA-AGTAT-GTCATGAT
1 TGCTTTTATTGTTTAATCAT-AT
26207505 CTGCTTTTATTGTTTAATCATAT
1 -TGCTTTTATTGTTTAATCATAT
26207528 TGCTT
1 TGCTT
26207533 CATGATAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 7 0.19
22 12 0.32
23 5 0.14
24 4 0.11
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.54
Consensus pattern (22 bp):
TGCTTTTATTGTTTAATCATAT
Found at i:26207505 original size:43 final size:43
Alignment explanation
Indices: 26207444--26207532 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
26207434 ATTATTTTTT
26207444 CTTTAAGTATGTCATGATCTGCTTTTATTGTTTAATCATATTG
1 CTTTAAGTATGTCATGATCTGCTTTTATTGTTTAATCATATTG
26207487 CTTTAAGTATGTCATGATCTGCTTTTATTGTTTAATCATATTG
1 CTTTAAGTATGTCATGATCTGCTTTTATTGTTTAATCATATTG
26207530 CTT
1 CTT
26207533 CATGATAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.52
Consensus pattern (43 bp):
CTTTAAGTATGTCATGATCTGCTTTTATTGTTTAATCATATTG
Found at i:26207509 original size:21 final size:21
Alignment explanation
Indices: 26207444--26207511 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
26207434 ATTATTTTTT
26207444 CTTTAAGTATGTCATGATCTG
1 CTTTAAGTATGTCATGATCTG
* * *
26207465 CTTTTATTGTTTAATCAT-AT-TG
1 C-TTTA-AGTAT-GTCATGATCTG
26207487 CTTTAAGTATGTCATGATCTG
1 CTTTAAGTATGTCATGATCTG
26207508 CTTT
1 CTTT
26207512 TATTGTTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 11 0.31
22 7 0.19
23 5 0.14
24 4 0.11
ACGTcount: A:0.22, C:0.13, G:0.15, T:0.50
Consensus pattern (21 bp):
CTTTAAGTATGTCATGATCTG
Found at i:26209849 original size:6 final size:6
Alignment explanation
Indices: 26209840--26209880 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
26209830 TCTAAGTCTA
* *
26209840 TTTATT TTTA-T TTTATT TTTGTT TTTATT TTT-CT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
26209881 ACTTTTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:26209856 original size:11 final size:11
Alignment explanation
Indices: 26209840--26209880 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
26209830 TCTAAGTCTA
26209840 TTTATTTTTAT
1 TTTATTTTTAT
*
26209851 TTTATTTTTGTT
1 TTTATTTTT-AT
*
26209863 TTTATTTTTCT
1 TTTATTTTTAT
26209874 TTTATTT
1 TTTATTT
26209881 ACTTTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:26213131 original size:6 final size:5
Alignment explanation
Indices: 26213107--26213171 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 5
26213097 ATTGAGTCCA
*
26213107 TTTAT TTTAT TTTATT TTTAGT TTTAGT TTTAT TTCTATT TTTAGG TTTAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTA-T TTTAT TT-TA-T TTTA-T TTTAT
26213158 TGTTAT TTT-T TTTA
1 T-TTAT TTTAT TTTA
26213172 GACTTCTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
4 4 0.08
5 15 0.29
6 29 0.57
7 3 0.06
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:26213139 original size:18 final size:17
Alignment explanation
Indices: 26213107--26213166 Score: 68
Period size: 18 Copynumber: 3.5 Consensus size: 17
26213097 ATTGAGTCCA
26213107 TTTATTTTA-TTTTATT
1 TTTATTTTAGTTTTATT
26213123 TTTAGTTTTAGTTTTATT
1 TTTA-TTTTAGTTTTATT
* *
26213141 TCTATTTTTAGGTTTATT
1 TTTA-TTTTAGTTTTATT
*
26213159 GTTATTTT
1 TTTATTTT
26213167 TTTTAGACTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
16 4 0.11
17 9 0.24
18 24 0.65
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (17 bp):
TTTATTTTAGTTTTATT
Found at i:26213151 original size:24 final size:22
Alignment explanation
Indices: 26213107--26213170 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 22
26213097 ATTGAGTCCA
*
26213107 TTTATTTTATTTTATTTTTAGT
1 TTTATTTTATTTTATTTTTAGG
26213129 TTTAGTTTTATTTCTATTTTTAGG
1 TTTA-TTTTATTT-TATTTTTAGG
26213153 TTTATTGTTATTTT-TTTT
1 TTTATT-TTATTTTATTTT
26213171 AGACTTCTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
22 8 0.21
23 11 0.29
24 19 0.50
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (22 bp):
TTTATTTTATTTTATTTTTAGG
Found at i:26213158 original size:12 final size:12
Alignment explanation
Indices: 26213107--26213170 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
26213097 ATTGAGTCCA
26213107 TTTA-TTTTA-T
1 TTTATTTTTAGT
26213117 TTTATTTTTAGT
1 TTTATTTTTAGT
*
26213129 TTTAGTTTTA-T
1 TTTATTTTTAGT
*
26213140 TTCTATTTTTAGG
1 TT-TATTTTTAGT
*
26213153 TTTATTGTTA-T
1 TTTATTTTTAGT
26213164 TTT-TTTT
1 TTTATTTT
26213171 AGACTTCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 7 0.16
11 11 0.25
12 24 0.55
13 2 0.05
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (12 bp):
TTTATTTTTAGT
Found at i:26217096 original size:17 final size:18
Alignment explanation
Indices: 26217071--26217104 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26217061 AATATAGTAA
*
26217071 AATATAAATTATAAAAAT
1 AATATAAATAATAAAAAT
26217089 AATA-AAATAATAAAAA
1 AATATAAATAATAAAAA
26217105 CAAAACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATATAAATAATAAAAAT
Found at i:26217318 original size:148 final size:151
Alignment explanation
Indices: 26217155--26217428 Score: 362
Period size: 148 Copynumber: 1.8 Consensus size: 151
26217145 AAGACTTTAG
* * * *
26217155 CACAAACAATTTTTTTTACAATCAAAAATATAATCTTAAACATTAAAT-TTAAGTATTAAAAATA
1 CACAAACAATATTTTTTACAAACAAAAATATAATATTAAACATTAAATCTAAAG-ATTAAAAATA
26217219 AA-A-AA-ATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAAC-TTAAAACTAT
65 AATAGAATATAAACATAAAATATAAAAATTATTATTAC-AAC-AAAAAAAAAACATTAAAACTAT
26217280 CATAAACTATCTCTAAAACTCCGA
128 CATAAACTATCTCTAAAACTCCGA
* * *
26217304 CACAAACAA-ATTTTTTATAAACAAAAATATAATATTAAATATTTAATCTAAAGATTAAAAATAA
1 CACAAACAATATTTTTTACAAACAAAAATATAATATTAAACATTAAATCTAAAGATTAAAAATAA
* * * * *
26217368 ATTAGAATATAAATATATAATATACAAATTATTATTACAACAATAAAAACACATTAAAACT
66 A-TAGAATATAAACATAAAATATAAAAATTATTATTACAACAAAAAAAAAACATTAAAACT
26217429 TTCACAATTT
Statistics
Matches: 107, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
148 44 0.41
149 13 0.12
150 10 0.09
151 13 0.12
152 27 0.25
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (151 bp):
CACAAACAATATTTTTTACAAACAAAAATATAATATTAAACATTAAATCTAAAGATTAAAAATAA
ATAGAATATAAACATAAAATATAAAAATTATTATTACAACAAAAAAAAAACATTAAAACTATCAT
AAACTATCTCTAAAACTCCGA
Found at i:26221366 original size:355 final size:355
Alignment explanation
Indices: 26220373--26221435 Score: 2049
Period size: 354 Copynumber: 3.0 Consensus size: 355
26220363 TTTTAATAAA
* *
26220373 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAGTGCCTTGATGCATCTGCATAATT
1 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
26220438 CCTTTATTTTCATTTTTAAA-GGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
66 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
26220502 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
131 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
*
26220567 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTTAAG
196 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
*
26220632 ATCATACCAGTAAATGAACTAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
261 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
26220697 TTTAATAGATGGAAGAGAGAGGTTAGCACT
326 TTTAATAGATGGAAGAGAGAGGTTAGCACT
*
26220727 TATCTCCCCCATGCACCAACCCACTAATAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
1 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
26220792 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAG-CTTATGATTCGGAACAAAATCTTTG
66 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
26220856 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
131 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
*
26220921 AACAGCCATTTTACGAAGCACTCAACTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
196 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
26220986 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
261 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
26221051 TTTAATAGATGGAAGAGAGAGGTTAGCACT
326 TTTAATAGATGGAAGAGAGAGGTTAGCACT
26221081 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
1 TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
26221146 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
66 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
*
26221211 AAGGGTTACAAAGTCGAGATGTGGATATCCACCAAGAACCAAACCAATAGCGGGCGTGGTTGACC
131 AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
26221276 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
196 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
26221341 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
261 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
26221406 TTTAATAGATGGAAGAGAGAGGTTAGCACT
326 TTTAATAGATGGAAGAGAGAGGTTAGCACT
26221436 AACTAACTTG
Statistics
Matches: 698, Mismatches: 9, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
354 432 0.62
355 266 0.38
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (355 bp):
TATCTCCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATT
CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCGGAACAAAATCTTTG
AAGGGTTACAAAGTCGAGATGTGGATATCCACTAAGAACCAAACCAATAGCGGGCGTGGTTGACC
AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTA
TTTAATAGATGGAAGAGAGAGGTTAGCACT
Found at i:26229199 original size:14 final size:14
Alignment explanation
Indices: 26229180--26229208 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26229170 CTCTTGAGAT
26229180 TAATCTTTATCGAG
1 TAATCTTTATCGAG
26229194 TAATCTTTATCGAG
1 TAATCTTTATCGAG
26229208 T
1 T
26229209 CAAAGGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (14 bp):
TAATCTTTATCGAG
Found at i:26234076 original size:9 final size:9
Alignment explanation
Indices: 26234059--26234133 Score: 66
Period size: 9 Copynumber: 8.6 Consensus size: 9
26234049 CATCTGGCAA
26234059 AAAAATTAT
1 AAAAATTAT
*
26234068 AAAAGTTAT
1 AAAAATTAT
*
26234077 AAAAATCAAT
1 AAAAAT-TAT
*
26234087 AAAAGTTAT
1 AAAAATTAT
26234096 AAAAATTAT
1 AAAAATTAT
*
26234105 -TAAATTA-
1 AAAAATTAT
*
26234112 AAAAAAT-T
1 AAAAATTAT
*
26234120 AAAAATTAG
1 AAAAATTAT
26234129 AAAAA
1 AAAAA
26234134 AATTTATAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
8 16 0.31
9 28 0.55
10 7 0.14
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26234108 original size:19 final size:18
Alignment explanation
Indices: 26234059--26234133 Score: 84
Period size: 19 Copynumber: 4.3 Consensus size: 18
26234049 CATCTGGCAA
26234059 AAAAATTATAAAAGTTAT
1 AAAAATTATAAAAGTTAT
*
26234077 AAAAATCAATAAAAGTTAT
1 AAAAAT-TATAAAAGTTAT
* *
26234096 AAAAATTATTAAA-TTAA
1 AAAAATTATAAAAGTTAT
*
26234113 AAAAATTA-AAAA-TTAG
1 AAAAATTATAAAAGTTAT
26234129 AAAAA
1 AAAAA
26234134 AATTTATAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.22
17 11 0.22
18 11 0.22
19 17 0.34
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAAATTATAAAAGTTAT
Found at i:26234462 original size:19 final size:19
Alignment explanation
Indices: 26234416--26234492 Score: 59
Period size: 20 Copynumber: 4.0 Consensus size: 19
26234406 CTATATTTCC
*
26234416 ATATATTTTATAATTTTT-
1 ATATTTTTTATAATTTTTA
*
26234434 TTATGATTTTTATAATTTTTA
1 ATAT--TTTTTATAATTTTTA
**
26234455 ATA-TTTTTATTAAAATTTA
1 ATATTTTTTA-TAATTTTTA
* *
26234474 ATAATTTGTATAATTTTTA
1 ATATTTTTTATAATTTTTA
26234493 TTTTTATCAT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
18 9 0.20
19 17 0.37
20 18 0.39
21 2 0.04
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
ATATTTTTTATAATTTTTA
Found at i:26243933 original size:92 final size:94
Alignment explanation
Indices: 26243835--26244013 Score: 283
Period size: 92 Copynumber: 1.9 Consensus size: 94
26243825 TTTTATAGCT
* *
26243835 ATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTT-A-GTATT-TTGTGAG
1 ATTTTGTCAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGT-TTATTGTGAG
26243897 TTTTTATGAATGTAAATTTTTTTTAAAGTC
65 TTTTTATGAATGTAAATTTTTTTTAAAGTC
* * *
26243927 ATTTTGTCAGTAATTTATGGTTAGATTATAAATTGTTTGGGTTTTGTTTAATGTTTATTGTGATT
1 ATTTTGTCAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGTTTATTGTGAGT
26243992 TTTTATGAATGTAAATTTTTTT
66 TTTTATGAATGTAAATTTTTTT
26244014 ATTTTTTTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
92 45 0.57
93 3 0.04
94 31 0.39
ACGTcount: A:0.26, C:0.01, G:0.17, T:0.56
Consensus pattern (94 bp):
ATTTTGTCAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGTTTATTGTGAGT
TTTTATGAATGTAAATTTTTTTTAAAGTC
Found at i:26244042 original size:111 final size:109
Alignment explanation
Indices: 26243921--26244350 Score: 484
Period size: 110 Copynumber: 4.0 Consensus size: 109
26243911 AATTTTTTTT
* * * * *
26243921 AAAGTCATTTTGTCAGTAATTTATGGTTAGATTATAAATTGTTTGGGTTTTGTTTAATGTTTATT
1 AAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTTTATT
* *
26243986 GTGATTTTTTATGAATGTAAATTTTTTTATTTTTTTAAATTATTTG
66 GTGATTTGTTATGAATGT-AATTTTTTT-TTTTTTTAAATTATTTC
* * *
26244032 AAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTTT-TTTTAGTGTTTATT
1 AAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTTTATT
*
26244096 GTGATTTTTTATGAATGTAA------TTTTTTTT-AATTATTTC
66 GTGATTTGTTATGAATGTAATTTTTTTTTTTTTTAAATTATTTC
* * * *
26244133 AAAGTTGTTTT-TTAGTAATTTATTATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTGTTTATT
1 AAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTTTATT
* * * * *
26244197 GTGACTTGTTATAAATGTTATTTTTTGTGTTTTTTAAATTATTTT
66 GTGATTTGTTATGAATGTAATTTTTT-TTTTTTTTAAATTATTTC
* * * *
26244242 AAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAATTTGTTTAGTTTAATGTGTA
1 AAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTT--TGTGTTTAGTTTAATGTTTA
* * * * *
26244307 TCGTGATTTGTTAT-AATGTAATTTTATTTGTTTTTGATTTATTT
64 TTGTGATTTGTTATGAATGTAATTTTTTTTTTTTTTAAATTATTT
26244351 GACAATTTTT
Statistics
Matches: 274, Mismatches: 33, Indels: 25
0.83 0.10 0.08
Matches are distributed among these distances:
100 35 0.13
101 47 0.17
102 7 0.03
103 1 0.00
108 7 0.03
109 20 0.07
110 72 0.26
111 56 0.20
112 29 0.11
ACGTcount: A:0.26, C:0.01, G:0.14, T:0.58
Consensus pattern (109 bp):
AAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTTTAGTTTAATGTTTATT
GTGATTTGTTATGAATGTAATTTTTTTTTTTTTTAAATTATTTC
Found at i:26244049 original size:203 final size:207
Alignment explanation
Indices: 26243751--26244331 Score: 704
Period size: 203 Copynumber: 2.8 Consensus size: 207
26243741 GTTATTAATT
*
26243751 ATTATAAATTGTTTGTGTTTAGTTTAGTG-TT-TTGTGATTTTTTTATGAATGTAAGTTTTTTGT
1 ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGA-TTTTTTATGAATGTAA-TTTTTTTT
* * *
26243814 TTTTTT-AATTATTTTATAGCTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGTT
64 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTT
26243878 TAGTTTAGT-ATT-TTGTGAGTTTTTATGAATGTAAATTTTTTTTAA-A-GTC-A-T-TTTGTCA
129 TAGTTTAGTGATTATTGTGAGTTTTTATGAATGT-AATTTTTTTTAATATGTCAAGTGTTTGTCA
*
26243936 GTAATTTATGGTTAG
193 GTAATTTATGATTAG
* * *
26243951 ATTATAAATTGTTTGGGTTTTGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTAT
1 ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGT-AATTTTTTT-T
*
26244016 TTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTT
64 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTT
* * * * *
26244081 T-TTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTAATTATTTCAAAGTTGTTTTT
129 TAGTTTAGTGATTATTGTGAGTTTTTATGAATGTAATTTTTTTTAA-TATGTC-AAG-TGTTTGT
* *
26244145 TAGTAATTTATTATTAG
191 CAGTAATTTATGATTAG
* * * * * *
26244162 GTTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGACTTGTTATAAATGTTATTTTTTGTGT
1 ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTT-TTT
* * *
26244227 TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAATTTGT
65 TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTT--TCTGT
* *
26244292 TTAGTTTAATG-TGTATCGTGA-TTTGTTAT-AATGTAATTTT
128 TTAGTTTAGTGAT-TATTGTGAGTTT-TTATGAATGTAATTTT
26244332 ATTTGTTTTT
Statistics
Matches: 328, Mismatches: 32, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
200 26 0.08
201 22 0.07
202 21 0.06
203 69 0.21
204 19 0.06
205 1 0.00
206 2 0.01
208 1 0.00
210 64 0.20
211 65 0.20
212 21 0.06
213 17 0.05
ACGTcount: A:0.26, C:0.01, G:0.15, T:0.58
Consensus pattern (207 bp):
ATTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTTT
TTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTGTTTA
GTTTAGTGATTATTGTGAGTTTTTATGAATGTAATTTTTTTTAATATGTCAAGTGTTTGTCAGTA
ATTTATGATTAG
Found at i:26244153 original size:100 final size:101
Alignment explanation
Indices: 26244014--26244331 Score: 370
Period size: 101 Copynumber: 3.0 Consensus size: 101
26244004 AAATTTTTTT
* * *
26244014 ATTTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTCTG
1 ATTTTTTTTAATTATTTCAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTGTTTCTG
* *
26244079 TTT-TTTTAGTGTTTATTGTGATTTTTTATGAATGTA
66 TTTAGTTTAGTGTTTATTGTGATTTGTTAT-AATGTA
* * *
26244115 ATTTTTTTTAATTATTTCAAAGTTGTTTT-TTAGTAATTTATTATTAGGTTATAAATTGTTTGTG
1 ATTTTTTTTAATTATTTCAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTGTTTCTG
*
26244179 TTTAGTTTAGTGTTTATTGTGACTTGTTATAAATGTTA
66 TTTAGTTTAGTGTTTATTGTGATTTGTTAT-AATG-TA
* *
26244217 TTTTTTGTGTTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATT
1 ----AT-T-TTTTTT-AATTATTTCAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATT
* * * * *
26244282 ATTAATTTGTTTAGTTTAATGTGTATCGTGATTTGTTATAATGTA
59 GTT--TCTGTTTAGTTTAGTGTTTATTGTGATTTGTTATAATGTA
26244327 ATTTT
1 ATTTT
26244332 ATTTGTTTTT
Statistics
Matches: 184, Mismatches: 21, Indels: 21
0.81 0.09 0.09
Matches are distributed among these distances:
100 35 0.19
101 53 0.29
102 2 0.01
104 2 0.01
105 1 0.01
106 2 0.01
107 1 0.01
108 6 0.03
109 18 0.10
110 31 0.17
111 4 0.02
112 29 0.16
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (101 bp):
ATTTTTTTTAATTATTTCAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTGTTTCTG
TTTAGTTTAGTGTTTATTGTGATTTGTTATAATGTA
Done.