Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 100 of 373
Found at i:32503538 original size:53 final size:53
Alignment explanation
Indices: 32503386--32503581 Score: 173
Period size: 53 Copynumber: 3.7 Consensus size: 53
32503376 CCTCAGTTGT
* * * * * * *
32503386 AAAATACCCCTAAGTTGTGAAATTA-TCGAATTACCCCGACTTGTAAAATTACC
1 AAAATACCCCTGATTTGTAAAATTACT-GAAATACCCCAATTTGTAAAATTATC
* * * * *
32503439 GAAACACCTCC-AATTTGTAAAAATTATTGAAATACCCTAATTTGTAAAATTATC
1 AAAATACC-CCTGATTTGT-AAAATTACTGAAATACCCCAATTTGTAAAATTATC
* * *
32503493 AAAATACCCTTGATTTGTAAAATTACTGAAATATCCCCGA-TTGTAAAATTATT
1 AAAATACCCCTGATTTGTAAAATTACTGAAATA-CCCCAATTTGTAAAATTATC
* * *
32503546 GAAATACCCCTGATTTGTGAAATTACCGAAATACCC
1 AAAATACCCCTGATTTGTAAAATTACTGAAATACCC
32503582 TTGATTTGTG
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 3 0.03
53 68 0.58
54 45 0.38
55 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
AAAATACCCCTGATTTGTAAAATTACTGAAATACCCCAATTTGTAAAATTATC
Found at i:32503699 original size:27 final size:27
Alignment explanation
Indices: 32503596--32503688 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
32503586 TTTGTGAAAC
* *
32503596 TATCGAAATAACCCTGT-GGGTTAGGAT
1 TATCGAAATACCCCTGTAAGG-TAGGAT
*
32503623 TATCGAAATACCCCTGTAAGATAGGAT
1 TATCGAAATACCCCTGTAAGGTAGGAT
*
32503650 TATCAAAATACCCCTGTAAGGTAGGAT
1 TATCGAAATACCCCTGTAAGGTAGGAT
*
32503677 TACCGAAATACC
1 TATCGAAATACC
32503689 TTTGTAGGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
TATCGAAATACCCCTGTAAGGTAGGAT
Found at i:32503717 original size:27 final size:26
Alignment explanation
Indices: 32503693--32503759 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
32503683 AATACCTTTG
32503693 TAGGGTAAAATGACTGTTTTGCCTTA
1 TAGGGTAAAATGACTGTTTTGCCTTA
* * **
32503719 AAGAGTAAAATGACCATTTTGCCCTTA
1 TAGGGTAAAATGACTGTTTTG-CCTTA
32503746 T-GGGT-AAATGACTG
1 TAGGGTAAAATGACTG
32503760 ACTTGGGCTA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
25 7 0.22
26 20 0.62
27 5 0.16
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (26 bp):
TAGGGTAAAATGACTGTTTTGCCTTA
Found at i:32504287 original size:32 final size:32
Alignment explanation
Indices: 32504204--32504288 Score: 80
Period size: 32 Copynumber: 2.7 Consensus size: 32
32504194 ATTTACCCAA
* * * * * *
32504204 GGCTGTGTGCCGATTATATTATTGTTGCTGAT
1 GGCTATGTGCCAATCATAATATAGTTACTGAT
* *
32504236 GGCTATGTGCTAAACATAATATAGTTACTGAT
1 GGCTATGTGCCAATCATAATATAGTTACTGAT
* *
32504268 GGCTTTGTGCCAATGATAATA
1 GGCTATGTGCCAATCATAATA
32504289 CCACTACTGA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.38
Consensus pattern (32 bp):
GGCTATGTGCCAATCATAATATAGTTACTGAT
Found at i:32520143 original size:27 final size:27
Alignment explanation
Indices: 32520113--32520263 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
32520103 AAATTGTACA
* *
32520113 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
32520140 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
32520167 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
32520194 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
32520222 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
32520249 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
32520264 GATGATTATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 80 0.78
28 22 0.22
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:32520226 original size:82 final size:81
Alignment explanation
Indices: 32520113--32520263 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
32520103 AAATTGTACA
* * * *
32520113 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32520177 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32520194 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
32520259 TGCGA
65 TGCGA
32520264 GATGATTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 46 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32520269 original size:27 final size:27
Alignment explanation
Indices: 32520112--32520289 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
32520102 TAAATTGTAC
* **
32520112 AGCACTAAGGGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGATGACTATGT
* * *
32520139 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGATGACTATGT
* *
32520165 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGAGA-TGACTATGT
* * *
32520193 GGCACTAAGAGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAG-ATGACTATGT
** * *
32520221 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGATGACTATGT
* * *
32520248 GGCACTAAGTGTGCGAGATGATTATAT
1 AGCACTAAGTGTGCGAGATGACTATGT
*
32520275 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32520290 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 26, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.82
28 21 0.17
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGATGACTATGT
Found at i:32528112 original size:27 final size:27
Alignment explanation
Indices: 32528082--32528258 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
32528072 AAATTGTACA
* *
32528082 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
32528109 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
32528136 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
32528163 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
32528191 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
32528218 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
32528245 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
32528259 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:32528195 original size:82 final size:81
Alignment explanation
Indices: 32528082--32528237 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
32528072 AAATTGTACA
* * * *
32528082 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32528146 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32528163 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32528228 TGCGAGTTGA
65 TGCGAATTGA
32528238 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32559086 original size:40 final size:40
Alignment explanation
Indices: 32559033--32559108 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
32559023 AAGAAGTTTA
32559033 TTTTTTGGGCCATGTTGTATCAGTATAGGGTATTCGTCAG
1 TTTTTTGGGCCATGTTGTATCAGTATAGGGTATTCGTCAG
*
32559073 TTTTTTGGGCCATGTTGTATCAGTATCGGGTATTCG
1 TTTTTTGGGCCATGTTGTATCAGTATAGGGTATTCG
32559109 GGTTGATCCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.16, C:0.13, G:0.28, T:0.43
Consensus pattern (40 bp):
TTTTTTGGGCCATGTTGTATCAGTATAGGGTATTCGTCAG
Found at i:32566999 original size:10 final size:10
Alignment explanation
Indices: 32566977--32567028 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
32566967 AAATCTATCG
*
32566977 AAAA-TAATC
1 AAAATTAATT
32566986 AAAATTAATT
1 AAAATTAATT
32566996 AAAATTAATTAT
1 AAAATTAA-T-T
32567008 AAAATTAATT
1 AAAATTAATT
*
32567018 AAAATTCATT
1 AAAATTAATT
32567028 A
1 A
32567029 TGTTAATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.61
11 2 0.05
12 9 0.24
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:32567012 original size:12 final size:12
Alignment explanation
Indices: 32566986--32567018 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
32566976 GAAAATAATC
32566986 AAAATTAA-T-T
1 AAAATTAATTAT
32566996 AAAATTAATTAT
1 AAAATTAATTAT
32567008 AAAATTAATTA
1 AAAATTAATTA
32567019 AAATTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 1 0.05
12 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:32567038 original size:22 final size:22
Alignment explanation
Indices: 32566986--32567029 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
32566976 GAAAATAATC
32566986 AAAATTAATTAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
*
32567008 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTAATTAT
32567030 GTTAATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:32570961 original size:6 final size:6
Alignment explanation
Indices: 32570950--32571135 Score: 152
Period size: 6 Copynumber: 30.8 Consensus size: 6
32570940 AACCAAAATG
* *
32570950 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAACC AG-ATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
32570997 AGTAA-C AGAATC AGAATC AGGATC AGAATC AGAATT AG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
32571046 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAGC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* *
32571094 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
32571136 GTGAATGTAA
Statistics
Matches: 145, Mismatches: 20, Indels: 30
0.74 0.10 0.15
Matches are distributed among these distances:
5 11 0.08
6 122 0.84
7 9 0.06
8 3 0.02
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:32571317 original size:27 final size:27
Alignment explanation
Indices: 32571253--32571326 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
32571243 AGCATGGCTG
* * *
32571253 CCAGAA-CAGATATCGTGACAGAGTCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
32571279 CCAGATAT-AGATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATATTGTGGCAGAGCCA
* *
32571306 CTAGAATCAGATAATGTGGCA
1 CCAGAATCAGATATTGTGGCA
32571327 AACCCACCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.17
27 33 0.82
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGCCA
Found at i:32571539 original size:22 final size:22
Alignment explanation
Indices: 32571491--32571549 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32571481 GTAAATACGT
*
32571491 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
32571513 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
32571535 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
32571550 TAACAACAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:32571716 original size:27 final size:26
Alignment explanation
Indices: 32571637--32571719 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
32571627 TCGATCGGTC
* * * * *
32571637 AACAAATATTATGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
32571663 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
32571690 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
32571717 AAC
1 AAC
32571720 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:32571948 original size:27 final size:27
Alignment explanation
Indices: 32571918--32572113 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
32571908 GGGGAAAAAT
* * *
32571918 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32571945 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32571972 GGTATTTCTACCTTACAAGGGTATGTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
32571999 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32572026 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32572053 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32572080 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32572107 AGTAATT
1 GGTAATT
32572114 TCACAATCAA
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32572148 original size:27 final size:27
Alignment explanation
Indices: 32572118--32572286 Score: 198
Period size: 27 Copynumber: 6.3 Consensus size: 27
32572108 GTAATTTCAC
* *
32572118 AATCAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* **
32572145 AATCGAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
32572172 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
32572199 AATAGAGGGTAAAA-TAGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
32572226 AATTGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
32572253 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
32572280 AATCGAG
1 AATCGAG
32572287 AGTACTTTGG
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:32574683 original size:42 final size:42
Alignment explanation
Indices: 32574636--32574731 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
32574626 CATCTATAAT
***
32574636 GAACTTGGACCACTCAATGTGCTTGGATGTCT-CATATATCAC
1 GAACTTGGACCACTCAACAAGCTTGGAT-TCTACATATATCAC
* *
32574678 GAACTTGGATCACTCAACAAGTTTGGATTCTCACATATATCAC
1 GAACTTGGACCACTCAACAAGCTTGGATTCT-ACATATATCAC
*
32574721 GAACTCGGACC
1 GAACTTGGACC
32574732 GCTTAATGAG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 3 0.07
42 23 0.51
43 19 0.42
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
GAACTTGGACCACTCAACAAGCTTGGATTCTACATATATCAC
Found at i:32575253 original size:30 final size:30
Alignment explanation
Indices: 32575217--32575275 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
32575207 TTCAAAAATC
*
32575217 AAACTTTTACAAATTTACA-TTTTGACCCCT
1 AAACTTTCACAAATTTACACTTTTG-CCCCT
*
32575247 AAACTTTCACATATTTACACTTTTGCCCC
1 AAACTTTCACAAATTTACACTTTTGCCCC
32575276 AATGTTCGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTCACAAATTTACACTTTTGCCCCT
Found at i:32576716 original size:41 final size:42
Alignment explanation
Indices: 32576633--32576748 Score: 184
Period size: 40 Copynumber: 2.8 Consensus size: 42
32576623 ATGTCGAATA
32576633 CTTGAATTCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT
1 CTTGAA-TCTCGCACACTAAGTGCC-ATACATAGCCGAAGCTAT
*
32576677 -TTTAATCTCGCACACTAAGTGCCATACATAGCCGAAGCTAT
1 CTTGAATCTCGCACACTAAGTGCCATACATAGCCGAAGCTAT
32576718 CTTGAAT-T-GCACACTAAGTGCCATACATAGC
1 CTTGAATCTCGCACACTAAGTGCCATACATAGC
32576749 TGAATTGTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
40 23 0.33
41 19 0.28
42 23 0.33
43 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
CTTGAATCTCGCACACTAAGTGCCATACATAGCCGAAGCTAT
Found at i:32583748 original size:19 final size:19
Alignment explanation
Indices: 32583724--32583761 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32583714 GGAAGTGTAC
*
32583724 TATAACTCTGCTGTAAATA
1 TATAACTCTGCTGCAAATA
32583743 TATAACTCTGCTGCAAATA
1 TATAACTCTGCTGCAAATA
32583762 CCATTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (19 bp):
TATAACTCTGCTGCAAATA
Found at i:32588202 original size:27 final size:26
Alignment explanation
Indices: 32588164--32588326 Score: 157
Period size: 27 Copynumber: 6.0 Consensus size: 26
32588154 GTTAAAACCT
32588164 TAGTTTGTAAAATTATCGAAATACCCC
1 TAGTTTGTAAAATTA-CGAAATACCCC
32588191 TAGTTTGTAAAATTACCGAAATACCCC
1 TAGTTTGTAAAATTA-CGAAATACCCC
* *
32588218 CAATTTGTAAAATTACTGAAATACCCC
1 TAGTTTGTAAAATTAC-GAAATACCCC
* * *
32588245 CAGTTTGTAAATTTACTAAAATACCCC
1 TAGTTTGTAAAATTAC-GAAATACCCC
* * * *
32588272 CAATTTGTAAAAGTACCGAAATACCCT
1 TAGTTTGTAAAATTA-CGAAATACCCC
* *
32588299 TA-TAGTGTAAAATTATCAAAATACCCC
1 TAGT-TTGTAAAATTA-CGAAATACCCC
32588326 T
1 T
32588327 GTAGGGTAAA
Statistics
Matches: 116, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 113 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
TAGTTTGTAAAATTACGAAATACCCC
Found at i:32588250 original size:54 final size:54
Alignment explanation
Indices: 32588167--32588325 Score: 196
Period size: 54 Copynumber: 2.9 Consensus size: 54
32588157 AAAACCTTAG
* *
32588167 TTTGTAAAATTA-TCGAAATACCCCTAGTTTGTAAAATTACCGAAATACCCCCAA
1 TTTGTAAAATTACT-GAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCCAA
* *
32588221 TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAATTTACTAAAATACCCCCAA
1 TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCCAA
* * ** * *
32588275 TTTGTAAAAGTACCGAAATACCCTTA-TAGTGTAAAATTATCAAAATACCCC
1 TTTGTAAAATTACTGAAATACCCCCAGT-TTGTAAAATTACCAAAATACCCC
32588326 TGTAGGGTAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 89 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCCAA
Found at i:32588321 original size:81 final size:81
Alignment explanation
Indices: 32588165--32588325 Score: 193
Period size: 81 Copynumber: 2.0 Consensus size: 81
32588155 TTAAAACCTT
* * * * *
32588165 AGTTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTACCGAAATACCCCCAATTTGTAAAA
1 AGTTTGTAAAATTATCAAAATACCCCCAATTTGTAAAAGTACCGAAATACCCCCAATGTGTAAAA
*
32588230 TTACTGAAATACCCCC
66 TTACTAAAATACCCCC
* **
32588246 AGTTTGTAAATTTA-CTAAAATACCCCCAATTTGTAAAAGTACCGAAATA-CCCTTATAGTGTAA
1 AGTTTGTAAAATTATC-AAAATACCCCCAATTTGTAAAAGTACCGAAATACCCCCAAT-GTGTAA
32588309 AATTA-TCAAAATACCCC
64 AATTACT-AAAATACCCC
32588326 TGTAGGGTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
80 7 0.10
81 61 0.90
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AGTTTGTAAAATTATCAAAATACCCCCAATTTGTAAAAGTACCGAAATACCCCCAATGTGTAAAA
TTACTAAAATACCCCC
Found at i:32593528 original size:28 final size:28
Alignment explanation
Indices: 32593497--32593575 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
32593487 ATACATGCTC
*
32593497 ATGGCCCACTAGGCCCAATCTCAT-TCAT
1 ATGGCCCACTAGGCCCAATCACATCT-AT
* *
32593525 ATGGCCTATTAGGCCCAAATCACATCTAT
1 ATGGCCCACTAGGCCC-AATCACATCTAT
*
32593554 ATGGCCCACTAGACCCAATCAC
1 ATGGCCCACTAGGCCCAATCAC
32593576 TTTTACAGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
28 20 0.47
29 22 0.51
30 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.23
Consensus pattern (28 bp):
ATGGCCCACTAGGCCCAATCACATCTAT
Found at i:32593556 original size:29 final size:28
Alignment explanation
Indices: 32593497--32593575 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
32593487 ATACATGCTC
*
32593497 ATGGCCCACTAGGCCCAATCTCATTCAT
1 ATGGCCCACTAGGCCCAATCACATTCAT
* *
32593525 ATGGCCTATTAGGCCCAAATCACA-TCTAT
1 ATGGCCCACTAGGCCC-AATCACATTC-AT
*
32593554 ATGGCCCACTAGACCCAATCAC
1 ATGGCCCACTAGGCCCAATCAC
32593576 TTTTACAGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
28 22 0.51
29 21 0.49
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.23
Consensus pattern (28 bp):
ATGGCCCACTAGGCCCAATCACATTCAT
Found at i:32593808 original size:8 final size:8
Alignment explanation
Indices: 32593795--32593838 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
32593785 GTAGCCAAAC
32593795 TTTCAGCT
1 TTTCAGCT
*
32593803 TTTCAGCA
1 TTTCAGCT
32593811 TTTCAGCT
1 TTTCAGCT
* *
32593819 TTTCGGCA
1 TTTCAGCT
*
32593827 TTTCAACT
1 TTTCAGCT
32593835 TTTC
1 TTTC
32593839 GGCATTTGCC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.16, C:0.25, G:0.11, T:0.48
Consensus pattern (8 bp):
TTTCAGCT
Found at i:32593816 original size:16 final size:16
Alignment explanation
Indices: 32593795--32593845 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
32593785 GTAGCCAAAC
*
32593795 TTTCAGCTTTTCAGCA
1 TTTCAGCTTTTCGGCA
32593811 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
32593827 TTTCAACTTTTCGGCA
1 TTTCAGCTTTTCGGCA
32593843 TTT
1 TTT
32593846 GCCGATCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:32596821 original size:27 final size:27
Alignment explanation
Indices: 32596785--32596921 Score: 148
Period size: 27 Copynumber: 5.1 Consensus size: 27
32596775 GTCGTTAAGA
32596785 CCCCAGTTTGTAAAATTACCGAAATAC
1 CCCCAGTTTGTAAAATTACCGAAATAC
**
32596812 CCCCAGTTTGTAAAATTACTAAAATAC
1 CCCCAGTTTGTAAAATTACCGAAATAC
** *
32596839 CCCTGGTTTGTAAAATTACTGAAATAC
1 CCCCAGTTTGTAAAATTACCGAAATAC
**** * *
32596866 CTTTGGCTTGTAAAATTACCGAAATGC
1 CCCCAGTTTGTAAAATTACCGAAATAC
* * *
32596893 CCCCAATTTGTAAAATTAGCAAAATAC
1 CCCCAGTTTGTAAAATTACCGAAATAC
32596920 CC
1 CC
32596922 TTGTAGTGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (27 bp):
CCCCAGTTTGTAAAATTACCGAAATAC
Found at i:32596877 original size:54 final size:53
Alignment explanation
Indices: 32596785--32596947 Score: 164
Period size: 54 Copynumber: 3.0 Consensus size: 53
32596775 GTCGTTAAGA
*** *
32596785 CCCCAGTTTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTACTAAAATAC
1 CCCCAGTTTGTAAAATTA-CGAAATACCCTTGGATTGTAAAATTACTAAAATAC
** * * ** *
32596839 CCCTGGTTTGTAAAATTACTGAAATACCTTTGGCTTGTAAAATTACCGAAATGC
1 CCCCAGTTTGTAAAATTAC-GAAATACCCTTGGATTGTAAAATTACTAAAATAC
* * * *
32596893 CCCCAATTTGTAAAATTAGCAAAATACCCTTGTAGTGTAAAATTACTAAAATAC
1 CCCCAGTTTGTAAAATTA-CGAAATACCCTTGGATTGTAAAATTACTAAAATAC
32596947 C
1 C
32596948 TCTGTAAGCT
Statistics
Matches: 86, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
53 1 0.01
54 84 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (53 bp):
CCCCAGTTTGTAAAATTACGAAATACCCTTGGATTGTAAAATTACTAAAATAC
Found at i:32596932 original size:81 final size:81
Alignment explanation
Indices: 32596792--32596948 Score: 237
Period size: 81 Copynumber: 1.9 Consensus size: 81
32596782 AGACCCCAGT
* *
32596792 TTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTA
1 TTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACTAAAATACCCCTGGTGTGTAAAATTA
*
32596857 CTGAAATACCTTTGGC
66 CTAAAATACCTTTGGC
* *
32596873 TTGTAAAATTACCGAAATGCCCCCAATTTGTAAAATTAGC-AAAATA-CCCTTGTAGTGTAAAAT
1 TTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTA-CTAAAATACCCCTGGT-GTGTAAAAT
32596936 TACTAAAATACCT
64 TACTAAAATACCT
32596949 CTGTAAGCTA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
80 6 0.09
81 62 0.90
82 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (81 bp):
TTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACTAAAATACCCCTGGTGTGTAAAATTA
CTAAAATACCTTTGGC
Found at i:32596953 original size:27 final size:26
Alignment explanation
Indices: 32596792--32596953 Score: 96
Period size: 27 Copynumber: 6.0 Consensus size: 26
32596782 AGACCCCAGT
** *
32596792 TTGTAAAATTACCGAAATACCCCCAGT-
1 TTGTAAAATTACTAAAATA--CCCTGTA
32596819 TTGTAAAATTACTAAAATACCCCTGGT-
1 TTGTAAAATTACTAAAATA-CCCT-GTA
* * **
32596846 TTGTAAAATTACTGAAATACCTTTGGC
1 TTGTAAAATTACTAAAATACC-CTGTA
** * ***
32596873 TTGTAAAATTACCGAAATGCCCCCAA
1 TTGTAAAATTACTAAAATACCCTGTA
32596899 TTTGTAAAATTAGC-AAAATACCCTTGTA
1 -TTGTAAAATTA-CTAAAATACCC-TGTA
*
32596927 GTGTAAAATTACTAAAATACCTCTGTA
1 TTGTAAAATTACTAAAATACC-CTGTA
32596954 AGCTAAAATG
Statistics
Matches: 108, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
26 8 0.07
27 97 0.90
28 3 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACTAAAATACCCTGTA
Found at i:32599315 original size:21 final size:21
Alignment explanation
Indices: 32599290--32599336 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
32599280 AATTAGGGAT
*
32599290 TTAATTGTGAAATGTGTAAAA
1 TTAATGGTGAAATGTGTAAAA
*
32599311 TTAATGGTGAAATGTGTGAAA
1 TTAATGGTGAAATGTGTAAAA
32599332 -TAATG
1 TTAATG
32599337 AAAATTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.36
Consensus pattern (21 bp):
TTAATGGTGAAATGTGTAAAA
Found at i:32609307 original size:28 final size:29
Alignment explanation
Indices: 32609267--32609378 Score: 122
Period size: 29 Copynumber: 3.9 Consensus size: 29
32609257 GCTGTATCTA
* *
32609267 GCCCATTAAGCCC-AATCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
*
32609295 GCCCATTAGGCCCAAATCACCTAT-ATATG
1 GCCCATTAGGCCCAAATCACAT-TCATATG
* *
32609324 GCCCATTAGACCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* * *
32609353 GCCCGTTAGG-CCTAGTCACATTCATA
1 GCCCATTAGGCCCAAATCACATTCATA
32609379 ATCATGCTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 26 0.37
29 44 0.62
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:32611732 original size:12 final size:12
Alignment explanation
Indices: 32611715--32611740 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32611705 ACCAATATTC
32611715 AGCCACGTTAGG
1 AGCCACGTTAGG
32611727 AGCCACGTTAGG
1 AGCCACGTTAGG
32611739 AG
1 AG
32611741 GCAAGTCCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.15
Consensus pattern (12 bp):
AGCCACGTTAGG
Found at i:32614187 original size:24 final size:23
Alignment explanation
Indices: 32614158--32614206 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
32614148 TCAACTTCTT
32614158 ATAATTACAATGAA-AATAACAATA
1 ATAATTACAAT-AATAATAAC-ATA
*
32614182 ATAATTCCAATAATAATAACATA
1 ATAATTACAATAATAATAACATA
32614205 AT
1 AT
32614207 GAAACCTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (23 bp):
ATAATTACAATAATAATAACATA
Found at i:32615126 original size:29 final size:29
Alignment explanation
Indices: 32615063--32615170 Score: 137
Period size: 29 Copynumber: 3.8 Consensus size: 29
32615053 TTCACATACC
* * *
32615063 TTTATCTGGCCCATTAAGCCC-AATCATA
1 TTTATATGGCCCATTAGGCCCAAATCACA
*
32615091 TTTATATGGCCCATTAGGCCCAAATCACC
1 TTTATATGGCCCATTAGGCCCAAATCACA
* *
32615120 TATATATGGTCCATTAGGCCCAAATCACA
1 TTTATATGGCCCATTAGGCCCAAATCACA
**
32615149 TTTATATGGCCTGTTAGGCCCA
1 TTTATATGGCCCATTAGGCCCA
32615171 GACATATTCA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 19 0.28
29 49 0.72
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (29 bp):
TTTATATGGCCCATTAGGCCCAAATCACA
Found at i:32615423 original size:17 final size:17
Alignment explanation
Indices: 32615401--32615437 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
32615391 AACTTTTAGC
32615401 TTTTCGACATTTCAGCT
1 TTTTCGACATTTCAGCT
*
32615418 TTTTCGGCATTTCAGCT
1 TTTTCGACATTTCAGCT
32615435 TTT
1 TTT
32615438 GCCGATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.51
Consensus pattern (17 bp):
TTTTCGACATTTCAGCT
Found at i:32619692 original size:29 final size:29
Alignment explanation
Indices: 32619629--32619744 Score: 128
Period size: 29 Copynumber: 4.1 Consensus size: 29
32619619 TTCACATACC
* * *
32619629 TTTATCTGGCCCATTAAGCCC-AATCATA
1 TTTATATGGCCCATTAGGCCCAAATCACA
* *
32619657 TTCATATGGCCCATTAGGCCCAAATCACC
1 TTTATATGGCCCATTAGGCCCAAATCACA
* *
32619686 TGTATATGGTCCATTAGGCCCAAATCACA
1 TTTATATGGCCCATTAGGCCCAAATCACA
** *
32619715 TTTATATGGCCTGTTAGGCCC-AGTCACA
1 TTTATATGGCCCATTAGGCCCAAATCACA
32619743 TT
1 TT
32619745 CATAATCATG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 26 0.36
29 47 0.64
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
TTTATATGGCCCATTAGGCCCAAATCACA
Found at i:32619830 original size:17 final size:18
Alignment explanation
Indices: 32619808--32619841 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32619798 TTCCTATTAT
32619808 GGGCCCA-ACAGCCCATC
1 GGGCCCATACAGCCCATC
*
32619825 GGGCCCATTCAGCCCAT
1 GGGCCCATACAGCCCAT
32619842 TTAGCGCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCATACAGCCCATC
Found at i:32620690 original size:34 final size:34
Alignment explanation
Indices: 32620652--32620738 Score: 138
Period size: 34 Copynumber: 2.6 Consensus size: 34
32620642 AAAGAAAAAC
32620652 AAATGGGTTTTCGGCTTTTTGGATCTTGAAAAGA
1 AAATGGGTTTTCGGCTTTTTGGATCTTGAAAAGA
*
32620686 AAATGGGTTTTCGGCATTTTGGATCTTGAAAAGA
1 AAATGGGTTTTCGGCTTTTTGGATCTTGAAAAGA
** *
32620720 AAAAAGGTTTTCGGATTTT
1 AAATGGGTTTTCGGCTTTT
32620739 GGAGAAAGGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (34 bp):
AAATGGGTTTTCGGCTTTTTGGATCTTGAAAAGA
Found at i:32625417 original size:42 final size:42
Alignment explanation
Indices: 32625357--32625460 Score: 102
Period size: 43 Copynumber: 2.5 Consensus size: 42
32625347 TCTGAACTTG
** *
32625357 TTGAGTGGTCCAAGTTCATGAT-ATGTGAGGCATCTGAGCTCA
1 TTGAGTGGTCTGAGTTCATGATGATGTG-GGCATCCGAGCTCA
* * * * *
32625399 TTGAGTGGTCTGATTTCATTATGGATGTGTGCATCCGAGTTCG
1 TTGAGTGGTCTGAGTTCATGAT-GATGTGGGCATCCGAGCTCA
*
32625442 TTGAGTGGTCTGTGTTCAT
1 TTGAGTGGTCTGAGTTCAT
32625461 AATGGATGCG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 18 0.36
43 27 0.54
44 5 0.10
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.38
Consensus pattern (42 bp):
TTGAGTGGTCTGAGTTCATGATGATGTGGGCATCCGAGCTCA
Found at i:32628358 original size:23 final size:23
Alignment explanation
Indices: 32628332--32628385 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
32628322 TTTATTTTAT
32628332 TTTTATCTTTT-TTTTAAAACTA
1 TTTTATCTTTTCTTTTAAAACTA
* *
32628354 CTTTT-TTTTTTCTTTTAATACTA
1 -TTTTATCTTTTCTTTTAAAACTA
32628377 TTTTATCTT
1 TTTTATCTT
32628386 GAGATTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTATCTTTTCTTTTAAAACTA
Found at i:32630266 original size:13 final size:13
Alignment explanation
Indices: 32630248--32630288 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
32630238 CTGGACTTCC
*
32630248 TCACACGGGTGTG
1 TCACACGGGAGTG
*
32630261 TCACACAGGAGTG
1 TCACACGGGAGTG
*
32630274 TCACATGGGAGTG
1 TCACACGGGAGTG
32630287 TC
1 TC
32630289 CCTTTGGCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (13 bp):
TCACACGGGAGTG
Found at i:32636772 original size:13 final size:13
Alignment explanation
Indices: 32636754--32636778 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32636744 AAAGAAGCAA
32636754 GACACGGCCGTGC
1 GACACGGCCGTGC
32636767 GACACGGCCGTG
1 GACACGGCCGTG
32636779 TGCACTCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:32643504 original size:19 final size:18
Alignment explanation
Indices: 32643478--32643518 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
32643468 TTTATTTACG
*
32643478 TTTTTATATTTTAGCTTA
1 TTTTTATATTTTAGCTGA
32643496 TTTTATATATTTTAGCTGA
1 TTTT-TATATTTTAGCTGA
32643515 TTTT
1 TTTT
32643519 GAACCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.22, C:0.05, G:0.07, T:0.66
Consensus pattern (18 bp):
TTTTTATATTTTAGCTGA
Found at i:32643726 original size:68 final size:68
Alignment explanation
Indices: 32643654--32643836 Score: 298
Period size: 68 Copynumber: 2.7 Consensus size: 68
32643644 CATCATGTGT
32643654 ACAAGAGAGCTACGAGGTACTATATGGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATG
1 ACAAGAGAGCTACGAGGTACTATATGGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATG
32643719 TAG
66 TAG
*
32643722 ACAAGAGAGCTACGAGGTACTATATGGTAGCTAGGTCACATGTGTGATACGGGATGTTTACCATG
1 ACAAGAGAGCTACGAGGTACTATATGGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATG
32643787 TAG
66 TAG
* *
32643790 ACAAGAGAGCTACGGGAGAGGA-TAAAT-GTAGCTAGGTCACATGTGTG
1 ACAAGAGAGCTAC--GAG-GTACTATATGGTAGCTAGGTCACATGTGTG
32643837 GTTCCAAGTG
Statistics
Matches: 109, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
68 80 0.73
69 20 0.18
70 7 0.06
71 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGGTACTATATGGTAGCTAGGTCACATGTGTGATACGGGATGTATACCATG
TAG
Found at i:32651244 original size:68 final size:66
Alignment explanation
Indices: 32651172--32651347 Score: 180
Period size: 67 Copynumber: 2.6 Consensus size: 66
32651162 CATCATGTGT
* * *
32651172 ACAAGAGAGCTACAAGAAATTATGATGTAGCTAGGTCGCATGGGTGA-TACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GAAA-TAT-ATGTAGCTAGGTCGCATGGGTGACT-CCAGTGAAGGACACC
32651234 ATGTAG
61 ATGTAG
** *
32651240 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGACTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAAATATATGTAGCTAGGTCGCATGGGTGACTCCA-GTGAAGGACACCATGT
32651305 AG
65 AG
* * * *
32651307 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTG
1 ACAAGAGAGCTACGAAATATATGTAGCTAGGTCGCATGGGTG
32651348 GTACTGAATG
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
64 24 0.26
65 4 0.04
66 20 0.22
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGAAATATATGTAGCTAGGTCGCATGGGTGACTCCAGTGAAGGACACCATGTA
G
Found at i:32651277 original size:64 final size:64
Alignment explanation
Indices: 32651196--32651379 Score: 189
Period size: 67 Copynumber: 2.8 Consensus size: 64
32651186 AGAAATTATG
* *
32651196 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
32651260 ATGTAGCTAGGTCGCATGTGTGACT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGA-TACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
32651324 TAA
62 TAA
* * *
32651327 AT-TGGCTAGGTCACATGGGTGGTACTGAATGT-T-CACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT--ATGTGTACACCATGTAG-ACAAGAGAGC
32651380 CAAACTCTAT
Statistics
Matches: 99, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 24 0.24
65 2 0.02
66 21 0.21
67 32 0.32
68 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32654503 original size:28 final size:28
Alignment explanation
Indices: 32654440--32654590 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
32654430 ATATTAAGTC
*
32654440 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32654467 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32654495 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32654523 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32654551 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32654580 CGCACACTTAG
1 CGCACACTTAG
32654591 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32660889 original size:93 final size:93
Alignment explanation
Indices: 32660758--32660928 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32660748 GCCCCTAAGT
* * *
32660758 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32660823 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
32660851 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32660916 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32660929 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32660925 original size:46 final size:46
Alignment explanation
Indices: 32660753--32660925 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
32660743 AACCCGCCCC
* * * * *
32660753 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
32660799 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
32660847 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
32660892 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32660926 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:32661382 original size:30 final size:30
Alignment explanation
Indices: 32661348--32661407 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32661338 ATTTAATACG
32661348 AACTTTAAG-AAAATTACACTTTTGCCCCTA
1 AACTTT-AGCAAAATTACACTTTTGCCCCTA
* *
32661378 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
32661408 CGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTGCCCCTA
Found at i:32667975 original size:40 final size:40
Alignment explanation
Indices: 32667877--32668336 Score: 671
Period size: 40 Copynumber: 11.6 Consensus size: 40
32667867 TCCTCGTTCA
* * * * *
32667877 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32667916 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32667956 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32667996 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32668035 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32668074 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32668114 AATGCCTTC-GGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32668153 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32668193 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32668233 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32668273 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32668313 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32668337 CAGCATTCAA
Statistics
Matches: 393, Mismatches: 22, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
39 153 0.39
40 232 0.59
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32667978 original size:79 final size:79
Alignment explanation
Indices: 32667877--32668336 Score: 665
Period size: 79 Copynumber: 5.8 Consensus size: 79
32667867 TCCTCGTTCA
* * * * * *
32667877 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32667941 TTAACAACTCGCACG
65 TTAATAACTCGCACG
*
32667956 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTC-GGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
32668020 TTAATAACTCGCACG
65 TTAATAACTCGCACG
32668035 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
*
32668100 TAACAACTCGCACG
66 TAATAACTCGCACG
*
32668114 AATGCCTTCGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
32668179 TAATAACTCGCACG
66 TAATAACTCGCACG
32668193 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
* * *
32668258 TTAGTATCTCGCACA
65 TTAATAACTCGCACG
* * * * * * * *
32668273 AAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGA-CTTAACCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
32668337 CAGCATTCAA
Statistics
Matches: 352, Mismatches: 24, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
78 38 0.11
79 188 0.53
80 121 0.34
81 5 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
TAATAACTCGCACG
Found at i:32675538 original size:40 final size:40
Alignment explanation
Indices: 32675441--32675902 Score: 689
Period size: 40 Copynumber: 11.6 Consensus size: 40
32675431 TCCTCGTTCA
* * * * *
32675441 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32675480 AATG-CTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32675519 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32675559 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32675599 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32675639 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32675679 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32675719 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32675759 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32675799 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32675839 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32675879 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32675903 CAGCATTCAA
Statistics
Matches: 396, Mismatches: 22, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
38 29 0.07
39 11 0.03
40 348 0.88
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32690370 original size:27 final size:27
Alignment explanation
Indices: 32690345--32690443 Score: 146
Period size: 27 Copynumber: 3.7 Consensus size: 27
32690335 TTTGTAAATC
*
32690345 AGGGGTATTTTGGTAACTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
32690371 TGAGGGTATTTCGGTAATTTTACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
32690399 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
32690426 ATGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
32690444 CTATCCTACA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 62 0.95
28 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:32690403 original size:54 final size:53
Alignment explanation
Indices: 32690319--32690443 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 53
32690309 TAGAAAGTCA
** ** *
32690319 AGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAACTTTACAAATT
1 AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAACTTTACAAACT
*
32690372 GAGGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAACTTTACAAACT
*
32690426 ATGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
32690444 CTATCCTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.03
54 60 0.97
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAACTTTACAAACT
Found at i:32690457 original size:54 final size:53
Alignment explanation
Indices: 32690344--32690485 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 53
32690334 TTTTGTAAAT
* * *
32690344 CAGGGGTATTTTGGTAACTTTACAAATTGAGGGTATTTCGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTCTACAAA
* **
32690397 CTAGGGGTATTTTGGTAATTTTACAAACT-ATGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTACAAACTGA-GGGTATTTCGGTAATTCTA-CAAA
** * *
32690452 CAGGGGTATTTCAGTAATTTCACAATC-GAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAACTGAGGGTA
32690486 AAACGGTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
53 7 0.09
54 65 0.87
55 3 0.04
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (53 bp):
CAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTCTACAAA
Found at i:32690509 original size:27 final size:27
Alignment explanation
Indices: 32690475--32690672 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
32690465 GTAATTTCAC
* * *
32690475 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
32690502 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* *
32690529 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
32690556 AATCTAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
32690583 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
32690610 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
32690637 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
32690664 AATCGAGGG
1 AATCGAGGG
32690673 CATTTCAGTA
Statistics
Matches: 156, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 154 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:32692931 original size:31 final size:31
Alignment explanation
Indices: 32692888--32693095 Score: 373
Period size: 31 Copynumber: 6.7 Consensus size: 31
32692878 TTAGTCTTGA
*
32692888 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
32692918 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
32692949 CATATCACTGGGCCGAACCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
32692980 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
32693011 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
32693042 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
32693073 CATATCACTGGGCCTAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
32693096 ACTGTAAATG
Statistics
Matches: 171, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 5 0.03
31 166 0.97
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:32693166 original size:42 final size:42
Alignment explanation
Indices: 32693119--32693205 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
32693109 TGGCCCTTAG
* *
32693119 GCCCATTCCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTCCAATATCACATGTAATGTCAATGAATGTAAGCAA
* *
32693161 GCCCATTTCAATATCACATGTAATGTCACTGAATGTAAGCAA
1 GCCCATTCCAATATCACATGTAATGTCAATGAATGTAAGCAA
32693203 GCC
1 GCC
32693206 TATTTGGGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (42 bp):
GCCCATTCCAATATCACATGTAATGTCAATGAATGTAAGCAA
Found at i:32693386 original size:25 final size:25
Alignment explanation
Indices: 32693358--32693426 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
32693348 CTCTTTTAAT
* * *
32693358 AACTGGGGTAAAGCCTTTTCTGATA
1 AACTGGGGCAAAGCCCTTTCCGATA
*
32693383 AACTGGGGCAAAGCCCTTTCCGGTA
1 AACTGGGGCAAAGCCCTTTCCGATA
* *
32693408 AACTAGGGCAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
32693427 TAGCACTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTCCGATA
Found at i:32694387 original size:27 final size:27
Alignment explanation
Indices: 32694357--32694450 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 27
32694347 AATCTACAAA
32694357 CCAAGGGTATTT-TAGTAATTTTGTAAT
1 CCAAGGGTATTTCTA-TAATTTTGTAAT
*
32694384 CCAATGGTATTTCTATAATTTT-TAAAAAGT
1 CCAAGGGTATTTCTATAATTTTGT---AA-T
32694414 -CAAGGGTATTTCTATAATTTTGTAA-
1 CCAAGGGTATTTCTATAATTTTGTAAT
32694439 CTC-AGGGTATTT
1 C-CAAGGGTATTT
32694451 TGGTAATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
26 10 0.18
27 21 0.37
28 2 0.04
29 22 0.39
30 2 0.04
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.44
Consensus pattern (27 bp):
CCAAGGGTATTTCTATAATTTTGTAAT
Found at i:32694476 original size:27 final size:26
Alignment explanation
Indices: 32694437--32694563 Score: 191
Period size: 27 Copynumber: 4.7 Consensus size: 26
32694427 ATAATTTTGT
32694437 AACTCAGGGTATTTTGGTAATTTTACA
1 AACT-AGGGTATTTTGGTAATTTTACA
* *
32694464 AATTGAGGGTATTTTGGTAATTTCACA
1 AACT-AGGGTATTTTGGTAATTTTACA
*
32694491 AACTAGTGGTATTTCGGTAATTTTACA
1 AACTAG-GGTATTTTGGTAATTTTACA
32694518 AACTAGGGGTATTTTGGTAATTTTACA
1 AACTA-GGGTATTTTGGTAATTTTACA
32694545 AACTAGGGTATTTTGGTAA
1 AACTAGGGTATTTTGGTAA
32694564 GTCTATCCTA
Statistics
Matches: 91, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 16 0.18
27 74 0.81
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
AACTAGGGTATTTTGGTAATTTTACA
Found at i:32694583 original size:53 final size:53
Alignment explanation
Indices: 32694437--32694607 Score: 157
Period size: 54 Copynumber: 3.2 Consensus size: 53
32694427 ATAATTTTGT
* * * *
32694437 AACTCAGGGTATTTTGGTAATTTTACAAATTGAGG-GTATTTTGGTAATTTCACA
1 AACT-AGGGTATTTCGGTAAGTCTACAAACT-AGGAGTATTTTGGTAATTTCACA
* * * *
32694491 AACTAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
1 AACTAG-GGTATTTCGGTAAGTCTACAAACTAGGAGTATTTTGGTAATTTCACA
* ** **
32694545 AACTAGGGTATTTTGGTAAGTCTATCCTA-TAGGAGTATTTCAGTAATTTCACA
1 AACTAGGGTATTTCGGTAAGTCTA-CAAACTAGGAGTATTTTGGTAATTTCACA
* *
32694598 ATCGAGGGTA
1 AACTAGGGTA
32694608 AAATAGTAAT
Statistics
Matches: 100, Mismatches: 14, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
53 48 0.48
54 52 0.52
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (53 bp):
AACTAGGGTATTTCGGTAAGTCTACAAACTAGGAGTATTTTGGTAATTTCACA
Found at i:32694635 original size:27 final size:27
Alignment explanation
Indices: 32694597--32694794 Score: 288
Period size: 27 Copynumber: 7.3 Consensus size: 27
32694587 GTAATTTCAC
* *
32694597 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
32694624 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
32694651 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
32694678 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
32694705 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
32694732 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
32694759 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
32694786 AATCGAGGG
1 AATCGAGGG
32694795 CATTTCAGTA
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:32699140 original size:42 final size:43
Alignment explanation
Indices: 32699069--32699150 Score: 114
Period size: 42 Copynumber: 1.9 Consensus size: 43
32699059 ACTTACATCT
* *
32699069 AATCAAATATCGATGCCACTGTCCTAGACAGGGTCTTACACGA
1 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCCTACACGA
*
32699112 AATCAAATA-CGATGCCGA-TGTCCCAGACATGGTCCTACA
1 AATCAAATATCGATGCC-ACTGTCCCAGACAGGGTCCTACA
32699151 TGTAGATCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 25 0.71
43 10 0.29
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (43 bp):
AATCAAATATCGATGCCACTGTCCCAGACAGGGTCCTACACGA
Found at i:32705203 original size:23 final size:24
Alignment explanation
Indices: 32705176--32705220 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
32705166 TTTCACAAGC
*
32705176 TTATTCAATTCA-ATTTTCATACA
1 TTATTCAATTCACACTTTCATACA
*
32705199 TTATTCATTTCACACTTTCATA
1 TTATTCAATTCACACTTTCATA
32705221 TAATCAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (24 bp):
TTATTCAATTCACACTTTCATACA
Found at i:32705697 original size:42 final size:43
Alignment explanation
Indices: 32705637--32705751 Score: 144
Period size: 44 Copynumber: 2.7 Consensus size: 43
32705627 TTAATGCTAC
* * *
32705637 TGTCCCAGATAGGGTCTTACACGAAATCA-AA-TACGATGCCAA
1 TGTCCCAGACATGATCTTACACGAAATCATAAGT-CGATGCCAA
32705679 TGTCCCAGACATGATCTTACACGTAAATCATAAGTCGATGCCAA
1 TGTCCCAGACATGATCTTACACG-AAATCATAAGTCGATGCCAA
* * *
32705723 CGTCCCATACATGATCTTACATGAAATCA
1 TGTCCCAGACATGATCTTACACGAAATCA
32705752 CATATTGGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 20 0.31
43 12 0.19
44 31 0.48
45 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACATGATCTTACACGAAATCATAAGTCGATGCCAA
Found at i:32720980 original size:56 final size:56
Alignment explanation
Indices: 32720913--32721071 Score: 164
Period size: 55 Copynumber: 2.9 Consensus size: 56
32720903 CATGACAAAG
* * *
32720913 CACGCCTCTCAACAGGGCTACACATGAGCACCCGGACCTAGCATGCATCACAT-TTC
1 CACGCCTCTCAACAGGGCTACACAT-AGCTCCCGGACCTAGCATGTATCACATATTA
* * * * * *
32720969 CACGCCTCTCAATAGTGCTACATA-AGCTCCAGGACCTAG-GTGTACCACATAATTA
1 CACGCCTCTCAACAGGGCTACACATAGCTCCCGGACCTAGCATGTATCACAT-ATTA
* * *
32721024 CATGCCTCTCAACGGGGCTACACA-AGCTCCCGAACCTAGCATGTATCA
1 CACGCCTCTCAACAGGGCTACACATAGCTCCCGGACCTAGCATGTATCA
32721072 TGTCATCAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
53 8 0.10
54 13 0.16
55 34 0.41
56 27 0.33
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (56 bp):
CACGCCTCTCAACAGGGCTACACATAGCTCCCGGACCTAGCATGTATCACATATTA
Found at i:32722493 original size:31 final size:31
Alignment explanation
Indices: 32722449--32722549 Score: 159
Period size: 31 Copynumber: 3.3 Consensus size: 31
32722439 CTTAAGTACC
* * *
32722449 AAGCATTTCCATAAATCATATCACTAGGCC-
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
32722479 AAGGCCTTTTCATAAATCATATCACTGGGCCG
1 AA-GCCTTTTCATAAATCATATCACTGGGCCG
32722511 AAGCCTTTTCATAAATCATATCACTGGGCCG
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
32722542 AAGCCTTT
1 AAGCCTTT
32722550 ACTGTAAACG
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
30 2 0.03
31 62 0.94
32 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGCCTTTTCATAAATCATATCACTGGGCCG
Found at i:32722620 original size:42 final size:42
Alignment explanation
Indices: 32722573--32722664 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
32722563 TGGCCCTTAG
32722573 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
32722615 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
*
32722657 GCTCATTT
1 GCCCATTT
32722665 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
Found at i:32740876 original size:79 final size:79
Alignment explanation
Indices: 32740774--32740943 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 79
32740764 GCTCCTCGTT
* * **
32740774 AAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGA
1 AAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGA
32740838 TTTAACAACTCGCAC
66 TTT-ACAACTCGCAC
* * * *
32740853 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 AAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGA
* *
32740918 TTTATATCTCGCAC
66 TTTACAACTCGCAC
*
32740932 AAAGGCCTTCGG
1 AAATGCCTTCGG
32740944 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 52 0.67
80 26 0.33
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
AAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGA
TTTACAACTCGCAC
Found at i:32740956 original size:119 final size:119
Alignment explanation
Indices: 32740775--32740996 Score: 254
Period size: 119 Copynumber: 1.9 Consensus size: 119
32740765 CTCCTCGTTA
* * * *
32740775 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
32740840 TA-ACAAC-TCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TATAC-ACTTAGCAC-AAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * **
32740894 AATGCCTTCGGGACTTAACCCGGATTTA-TATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
32740957 TATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TATATACACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
32740997 CAGCATTCAA
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
118 11 0.13
119 68 0.80
120 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TATACACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:32740957 original size:39 final size:40
Alignment explanation
Indices: 32740775--32740943 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
32740765 CTCCTCGTTA
* * * ** *
32740775 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
32740814 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
32740854 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * *
32740894 AATGCCTTCGGGACTTAACCCGGATTT-ATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
32740933 AAGGCCTTCGG
1 AATGCCTTCGG
32740944 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
39 53 0.45
40 66 0.55
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:32740981 original size:79 final size:79
Alignment explanation
Indices: 32740811--32740996 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 79
32740801 TAGTAACTCA
* * *
32740811 CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCG
* *
32740876 GATTTAACAACTCG
66 GATATAACAACTAG
* * **
32740890 CACGAATGCCTTCGGGACTTAACCCGGATTT-ATATCTCGCACAAAGGCCTTC-GGATCTTAGTC
1 CAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACC
*
32740953 CGGATATATTC-ACTTAG
64 CGGATATA-ACAAC-TAG
* *
32740970 CACAAAGCCTTCGGGACTTAGCCCGGA
1 CACAATGCCTTCGGGACTTAACCCGGA
32740997 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 32 0.35
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCG
GATATAACAACTAG
Found at i:32741005 original size:41 final size:41
Alignment explanation
Indices: 32740928--32741005 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32740918 TTTATATCTC
* * *
32740928 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32740969 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32741006 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32744342 original size:40 final size:40
Alignment explanation
Indices: 32744282--32744465 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
32744272 TATTCGAATG
*
32744282 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
32744322 ATATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
32744362 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
32744402 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
32744442 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
32744466 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:32744415 original size:80 final size:80
Alignment explanation
Indices: 32744282--32744465 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
32744272 TATTCGAATG
* * *
32744282 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
32744346 ATTTGTACGAGTTG-CT
65 ATTTATACGAG-TGACC
* *
32744362 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
* *
32744427 TTTATGCTAGTGACC
66 TTTATACGAGTGACC
32744442 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
32744466 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATACGAGTGACC
Found at i:32748404 original size:10 final size:10
Alignment explanation
Indices: 32748389--32748433 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
32748379 AAATGCTCGT
32748389 GAAAAAAAAA
1 GAAAAAAAAA
32748399 GAAAAAAAAGAAA
1 G--AAAAAA-AAA
*
32748412 GAAAAGAAAA
1 GAAAAAAAAA
32748422 GAAAAAAAAA
1 GAAAAAAAAA
32748432 GA
1 GA
32748434 GCATATGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 15 0.50
11 5 0.17
12 6 0.20
13 4 0.13
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:32748405 original size:9 final size:9
Alignment explanation
Indices: 32748391--32748431 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
32748381 ATGCTCGTGA
32748391 AAAAAAAAG
1 AAAAAAAAG
32748400 AAAAAAAAG
1 AAAAAAAAG
*
32748409 AAAGAAAAG
1 AAAAAAAAG
32748418 AAAAGAAAA-
1 AAAA-AAAAG
32748427 AAAAA
1 AAAAA
32748432 GAGCATATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 1 0.03
9 24 0.83
10 4 0.14
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:32750154 original size:37 final size:37
Alignment explanation
Indices: 32750104--32750183 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
32750094 CTTATTACGA
* *
32750104 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
32750141 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
32750178 GGTCTT
1 AGTCTT
32750184 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:32750373 original size:47 final size:47
Alignment explanation
Indices: 32750314--32750799 Score: 708
Period size: 47 Copynumber: 10.4 Consensus size: 47
32750304 TATCACATTT
* * *
32750314 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
32750359 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
32750406 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
32750453 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
32750500 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
32750547 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
32750594 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
32750641 ATATACGTGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
32750688 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
** *
32750735 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
32750783 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
32750800 TATTCAATTA
Statistics
Matches: 398, Mismatches: 39, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 372 0.93
48 18 0.05
49 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:32755293 original size:20 final size:18
Alignment explanation
Indices: 32755260--32755296 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
32755250 TGTGATGTTT
32755260 ATATGCTTAATTTAATTA
1 ATATGCTTAATTTAATTA
32755278 ATATGACTTAAATTTAATT
1 ATATG-CTT-AATTTAATT
32755297 CATGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 3 0.18
20 9 0.53
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (18 bp):
ATATGCTTAATTTAATTA
Found at i:32760049 original size:55 final size:52
Alignment explanation
Indices: 32759894--32760089 Score: 133
Period size: 53 Copynumber: 3.7 Consensus size: 52
32759884 TTTCTTTTTA
* * * *
32759894 AACTTACCAGTGCCATGTCTTGACATGGTATTACGTGATATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGAT-TCCTTGCCTTATG
* * * * *
32759947 AACTCACCATTGCCATGCCTTGGCATGGTCTTACTTAGGA-TCTTTGCCTTATCG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTAC--ATGATTCCTTGCCTTAT-G
** * * * * *
32760001 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGA-TTCCTTGCCTTAT-G
* * * * *
32760056 AACTTACAAATGCCATGCCTTGGCAAGGTCTTAC
1 AACTCACCAATGCCATGTCTTGACATGGTCTTAC
32760090 TTGGTATCCT
Statistics
Matches: 108, Mismatches: 29, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
53 43 0.40
54 27 0.25
55 38 0.35
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (52 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATTCCTTGCCTTATG
Found at i:32774701 original size:158 final size:158
Alignment explanation
Indices: 32774413--32774726 Score: 565
Period size: 158 Copynumber: 2.0 Consensus size: 158
32774403 ATGCCTAAGT
* *
32774413 GGTCAGGCCGTGTACTACACTCGCCGGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
1 GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
*
32774478 GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCTCGTGTGCTAGGCTGTGTGACAAATTTTATT
66 GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGACAAATTTTATT
32774543 TTAGAATTTTAGGTGCAGTTTTCATATG
131 TTAGAATTTTAGGTGCAGTTTTCATATG
*
32774571 GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCGTGTAACTCTCTGACTTTTAAGGCAT
1 GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
* *
32774636 GAAGAAATTAAAGTAACACGGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATT
66 GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGACAAATTTTATT
*
32774701 TTCGAATTTTAGGTGCAGTTTTCATA
131 TTAGAATTTTAGGTGCAGTTTTCATA
32774727 CGGCTGTGTA
Statistics
Matches: 149, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 149 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (158 bp):
GGTCAGGCCATGTACTACACTCGCCCGTGTCCCTAACCCATGTAACTCTCTGACTTTTAAGGCAT
GAAGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGACAAATTTTATT
TTAGAATTTTAGGTGCAGTTTTCATATG
Found at i:32778745 original size:29 final size:28
Alignment explanation
Indices: 32778691--32778792 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
32778681 ATAGTAAGTC
*
32778691 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
32778719 CGCTCACTTAGTGCCTACATAATCAAACT
1 CGCACACTTAGTG-CTATATAATCAAACT
32778748 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32778776 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
32778793 GCAGTTTAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 42 0.63
29 25 0.37
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32778813 original size:29 final size:28
Alignment explanation
Indices: 32778692--32778818 Score: 114
Period size: 29 Copynumber: 4.5 Consensus size: 28
32778682 TAGTAAGTCC
* *
32778692 GCACACTTAGTGTTATATAATCAAA-CT
1 GCACACTTAGTGCTATACAATCAAACCT
* * *
32778719 CGCTCACTTAGTGCCTACATAATCAAA-CT
1 -GCACACTTAGTG-CTATACAATCAAACCT
* *
32778748 CGCACACTTAGTGCTATATAATCAAACTT
1 -GCACACTTAGTGCTATACAATCAAACCT
* * *
32778777 GCACACTTAGTGCTATGCAGTTTAAACCT
1 GCACACTTAGTGCTATACA-ATCAAACCT
32778806 GCACACTTAGTGC
1 GCACACTTAGTGC
32778819 CAATCTCATG
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
28 40 0.47
29 45 0.53
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCTATACAATCAAACCT
Found at i:32797565 original size:40 final size:40
Alignment explanation
Indices: 32797510--32797651 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
32797500 TATTCGAATG
32797510 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
32797550 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32797590 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
32797630 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32797652 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32800966 original size:34 final size:34
Alignment explanation
Indices: 32800922--32800994 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
32800912 CTGATTGCAT
* *
32800922 TACTGTTACTGTATTGGGCTAAGGCCC-ATACTGA
1 TACTGATACTGTAATGGGCTAAGGCCCTA-ACTGA
*
32800956 TACTGATACTGTAATGGGCTATGGCCCTAACTGA
1 TACTGATACTGTAATGGGCTAAGGCCCTAACTGA
32800990 TACTG
1 TACTG
32800995 GACTGTCACT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (34 bp):
TACTGATACTGTAATGGGCTAAGGCCCTAACTGA
Found at i:32801949 original size:37 final size:37
Alignment explanation
Indices: 32801890--32801998 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
32801880 AGCTCAGACG
* *
32801890 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
32801927 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
32801964 TAATCTCCACACATAGTCATCAGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32801999 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32802262 original size:100 final size:96
Alignment explanation
Indices: 32802144--32802329 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
32802134 GCACATCGCC
* *
32802144 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC----ATACACATTTCACA
32802209 TT-GACCATTCGGCTTTACCACATATGCATATCTCA
62 TTAG-CCATTCGGCTTTACCACATATGCATATCTCA
*
32802244 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACACATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACACATTTCACATTAG
*
32802309 CCATTTGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
32802330 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
96 34 0.42
97 1 0.01
100 46 0.57
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACACATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:32802270 original size:48 final size:48
Alignment explanation
Indices: 32802144--32802330 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
32802134 GCACATCGCC
*
32802144 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
32802196 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
32802244 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
32802292 TACACATTTCACATTAGCCATTTGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
32802331 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
48 82 0.65
49 1 0.01
51 1 0.01
52 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32802420 original size:22 final size:22
Alignment explanation
Indices: 32802393--32802464 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
32802383 GCTCACATTC
32802393 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
32802415 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
32802439 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32802462 ATC
1 ATC
32802465 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32802483 original size:47 final size:47
Alignment explanation
Indices: 32802300--32802472 Score: 256
Period size: 47 Copynumber: 3.7 Consensus size: 47
32802290 CATACACATT
* * * * *
32802300 TCACATTAGCCATTTGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
32802347 CCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
32802394 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
32802441 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
32802473 ACACATTCAC
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:32802483 original size:94 final size:92
Alignment explanation
Indices: 32802201--32802483 Score: 259
Period size: 94 Copynumber: 3.0 Consensus size: 92
32802191 ATATATATAT
* * * *
32802201 ATTTCACATT-GACCATTCGGCTTTACCAC--ATATGCATATCTCATACATAT-TTCACATTAGC
1 ATTTCACATTAG-CCATTCGGCCTTACCACATATATGCATGT-TC--ACAT-TCATCACATTGGC
* * * *
32802262 CATTCGGCTTTACCACATATACATATCTCATACAC
61 CATTCGGCCTTATCACATAT--ATA-CACATTCAC
* * * * *
32802297 ATTTCACATTAGCCATTTGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTT
1 ATTTCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCATCACATTGGCCATTC
* * ***
32802362 GGCCTTATCACACATATGCATGCTCAC
66 GGCCTTATCACATATATACACATTCAC
* *
32802389 ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCAT
1 ATT--TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCATCACATTGGCCAT
*
32802454 TCGGCCTTATCTCATATATACACATTCAC
64 TCGGCCTTATCACATATATACACATTCAC
32802483 A
1 A
32802484 ATTATCCAAA
Statistics
Matches: 152, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
92 7 0.05
93 2 0.01
94 78 0.51
95 27 0.18
96 26 0.17
97 3 0.02
98 9 0.06
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (92 bp):
ATTTCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACATATATACACATTCAC
Found at i:32806342 original size:43 final size:42
Alignment explanation
Indices: 32806294--32806455 Score: 177
Period size: 43 Copynumber: 3.8 Consensus size: 42
32806284 CAATGGCAAC
* *
32806294 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATAT-GATGCCACT
* *
32806337 GTCCCAGACAGGGTCTTACATGAAATCAAATATGATGTCGA-T
1 GTCCCAGACATGGTCTTACATGAAATCAAATATGATG-CCACT
*
32806379 GTCCCAGACATGGTCTTACATGTAGATCTCAAAT-TGATGCCAAC-
1 GTCCCAGACATGGTCTTACATG-A-A-ATCAAATATGATGCC-ACT
* * *
32806423 GTCCCAGACATGGTCATACACGAAATCACATAT
1 GTCCCAGACATGGTCTTACATGAAATCAAATAT
32806456 CGGAATCCTA
Statistics
Matches: 101, Mismatches: 11, Indels: 15
0.80 0.09 0.12
Matches are distributed among these distances:
41 5 0.05
42 28 0.28
43 35 0.35
44 27 0.27
45 6 0.06
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATGATGCCACT
Found at i:32806449 original size:86 final size:85
Alignment explanation
Indices: 32806294--32806455 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 85
32806284 CAATGGCAAC
* * *
32806294 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACATG
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCATACACG
32806359 AAATCAAATATGATGTCGAT
66 AAATCAAATATGATGTCGAT
*
32806379 GTCCCAGACATGGTCTTACATGTAGATCTCAAAT-T-GATGCCAAC-GTCCCAGACATGGTCATA
1 GTCCCAGACATGGTCTTACATGTA-A--TCAAATATCGATGCC-ACTGTCCCAGACAGGGTCATA
*
32806441 CACGAAATCACATAT
62 CACGAAATCAAATAT
32806456 CGGAATCCTA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
85 23 0.34
86 36 0.53
87 3 0.04
88 6 0.09
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTCATACACG
AAATCAAATATGATGTCGAT
Found at i:32816657 original size:30 final size:30
Alignment explanation
Indices: 32816623--32816709 Score: 95
Period size: 36 Copynumber: 2.7 Consensus size: 30
32816613 GGTACAGTCG
32816623 AGGTAAGTCATCCCAAATTCGGCACTTTTA
1 AGGTAAGTCATCCCAAATTCGGCACTTTTA
*
32816653 AGGTAA-ACAATACCCGCCTAAAATTCGGCACTTTTA
1 AGGTAAGTC-AT---C-CC--AAATTCGGCACTTTTA
32816689 AGGTAAGTCATCCCAAATTCG
1 AGGTAAGTCATCCCAAATTCG
32816710 AAGTGTTGGG
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
29 1 0.02
30 15 0.32
32 2 0.04
33 2 0.04
34 2 0.04
36 24 0.51
37 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (30 bp):
AGGTAAGTCATCCCAAATTCGGCACTTTTA
Found at i:32824458 original size:24 final size:24
Alignment explanation
Indices: 32824431--32824483 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
32824421 GGGTTCTTTG
*
32824431 TTTTCGGGTTTTCAGGGTTTAGTT
1 TTTTAGGGTTTTCAGGGTTTAGTT
**
32824455 TTTTAGGGTTTTTGGGGTTTAGTT
1 TTTTAGGGTTTTCAGGGTTTAGTT
32824479 TTTTA
1 TTTTA
32824484 TCTCCATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.09, C:0.04, G:0.28, T:0.58
Consensus pattern (24 bp):
TTTTAGGGTTTTCAGGGTTTAGTT
Found at i:32825665 original size:13 final size:13
Alignment explanation
Indices: 32825647--32825671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32825637 TATGGTCTAC
32825647 AATTTCATGAAAT
1 AATTTCATGAAAT
32825660 AATTTCATGAAA
1 AATTTCATGAAA
32825672 ATTTCGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (13 bp):
AATTTCATGAAAT
Found at i:32827105 original size:49 final size:50
Alignment explanation
Indices: 32827016--32827260 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
32827006 TCTATTGTGA
* *
32827016 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
* * * * *
32827065 GGTCGCATGTGTAGTACTAAGTGCAGGCTAATATGCGTACCTGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTC
* * * * ** *
32827116 GATCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
* *
32827166 GGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
* * *
32827215 GGTCGCATATGTAGTACTAAGTAG-AGGCTACTATGTGTACCAGATA
1 GGTCACATGTGTAGTACTAAGT-GCAGGCTACTACGTGTACCAGATA
32827261 GCCTTGTCTA
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 80 0.49
50 47 0.29
51 36 0.22
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTC
Found at i:32831510 original size:38 final size:38
Alignment explanation
Indices: 32831468--32831556 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 38
32831458 AGTAATAAAA
* *
32831468 TTTTAATAAAAATTGTAATGTAGTTT-AGTAAATATATC
1 TTTTAATAAAAATTGTAATATAATTTCA-TAAATATATC
* *
32831506 TTTTAATAAAATTTGTAATATAATTTCATTAATATATC
1 TTTTAATAAAAATTGTAATATAATTTCATAAATATATC
* *
32831544 TCTTAATATAAAT
1 TTTTAATAAAAAT
32831557 ATATAAATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 42 0.98
39 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (38 bp):
TTTTAATAAAAATTGTAATATAATTTCATAAATATATC
Found at i:32834659 original size:41 final size:41
Alignment explanation
Indices: 32834559--32834660 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 41
32834549 AAAAACGCTA
* * *
32834559 CAAAAGGTCAAGCATTAGCGGCGTTTATGAGAAAAATACAT
1 CAAAAGGTCAAGCATTAGTGACGTTTATGAGAAAAATACAG
* *
32834600 CAAAAGGTCAAGCATTAGTGATGTTTATGAGAAAAATACCG
1 CAAAAGGTCAAGCATTAGTGACGTTTATGAGAAAAATACAG
* *
32834641 CCAAAGGTTAAGCATTAGTG
1 CAAAAGGTCAAGCATTAGTG
32834661 GCACTATGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.24
Consensus pattern (41 bp):
CAAAAGGTCAAGCATTAGTGACGTTTATGAGAAAAATACAG
Found at i:32836419 original size:43 final size:43
Alignment explanation
Indices: 32836370--32836527 Score: 271
Period size: 43 Copynumber: 3.7 Consensus size: 43
32836360 AAAAAACGCT
*
32836370 GCTAAAAGCCATGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCC
1 GCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCC
* *
32836413 GCTAAAAGCCATGGCCTTTAGCGGTGTTTGTTGGAAAGGCGCC
1 GCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCC
32836456 GCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCC
1 GCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCC
* *
32836499 GCTAAAAGTCACGGCTTTTAGCGGCGTTT
1 GCTAAAAGCCACGGCCTTTAGCGGCGTTT
32836528 TTATGGCAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 110 1.00
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.25
Consensus pattern (43 bp):
GCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCC
Found at i:32836546 original size:86 final size:84
Alignment explanation
Indices: 32836363--32836546 Score: 269
Period size: 86 Copynumber: 2.1 Consensus size: 84
32836353 TTATTTAAAA
* *
32836363 AAACGCTGCTAAAAGCCATGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCCGCTAAAAGCCATGGC
1 AAACGCTGCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCCGCTAAAAGCCACGGC
*
32836428 CTTTAGCGGTGTTTGTTGG
66 CTTTAGCGGCGTTTGTTGG
* *
32836447 AAAGGCGCCGCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCCGCTAAAAGTCACG
1 AAA--CGCTGCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCCGCTAAAAGCCACG
* *
32836512 GCTTTTAGCGGCGTTTTTATGG
64 GCCTTTAGCGGCGTTTGT-TGG
32836534 CAAACGCTGCTAA
1 -AAACGCTGCTAA
32836547 TTTTTACAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
84 3 0.03
86 79 0.90
87 3 0.03
88 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (84 bp):
AAACGCTGCTAAAAGCCACGGCCTTTAGCGGCGTTTGTTGGAAAGGCGCCGCTAAAAGCCACGGC
CTTTAGCGGCGTTTGTTGG
Found at i:32836933 original size:21 final size:21
Alignment explanation
Indices: 32836909--32837005 Score: 117
Period size: 21 Copynumber: 4.6 Consensus size: 21
32836899 TCTGCTGCCA
32836909 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
32836930 TCGCT-CGTACCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
* *
32836951 TCACTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
32836972 TCGCTGCTG-CTGCTACCTCCC
1 TCGCTGCTGCCT-CTGCCTCCC
*
32836993 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
32837006 CGCTCTAAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.03
21 59 0.92
22 3 0.05
ACGTcount: A:0.03, C:0.51, G:0.18, T:0.29
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:32836983 original size:18 final size:18
Alignment explanation
Indices: 32836942--32837006 Score: 51
Period size: 18 Copynumber: 3.4 Consensus size: 18
32836932 GCTCGTACCT
*
32836942 CTGCCTCCCTCACTGCTGCCG
1 CTGCCTCCCT--C-GCTGCTG
32836963 CTGCCTCCCTCGCTGCTG
1 CTGCCTCCCTCGCTGCTG
* * *
32836981 CTG-CTACCTCCCTCTCTG
1 CTGCCTCCCTCGCT-GCTG
32836999 CTGCCTCC
1 CTGCCTCC
32837007 GCTCTAAGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 8 0.22
18 15 0.41
19 4 0.11
21 10 0.27
ACGTcount: A:0.03, C:0.52, G:0.17, T:0.28
Consensus pattern (18 bp):
CTGCCTCCCTCGCTGCTG
Found at i:32842594 original size:9 final size:9
Alignment explanation
Indices: 32842573--32842693 Score: 54
Period size: 9 Copynumber: 13.6 Consensus size: 9
32842563 TATATATTAC
*
32842573 GTAAGTTAA
1 GTAAGTTAT
32842582 GTAAGCTT-T
1 GTAAG-TTAT
32842591 GTAAGTTAT
1 GTAAGTTAT
32842600 GTAAGTTAT
1 GTAAGTTAT
* *
32842609 GTTA-TGAT
1 GTAAGTTAT
* *
32842617 ATACATTTAT
1 GTA-AGTTAT
**
32842627 GTAAGGCAT
1 GTAAGTTAT
*
32842636 GCAAGTTAT
1 GTAAGTTAT
* *
32842645 GATATGATAT
1 G-TAAGTTAT
* *
32842655 AT-ATTTAT
1 GTAAGTTAT
32842663 GT-A-TTAT
1 GTAAGTTAT
*
32842670 GTAAGTTGT
1 GTAAGTTAT
32842679 GTAAGTTAT
1 GTAAGTTAT
32842688 GATAAG
1 G-TAAG
32842694 ATATATATTT
Statistics
Matches: 81, Mismatches: 23, Indels: 15
0.68 0.19 0.13
Matches are distributed among these distances:
7 6 0.07
8 12 0.15
9 47 0.58
10 16 0.20
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.42
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:32842714 original size:56 final size:56
Alignment explanation
Indices: 32842647--32842878 Score: 339
Period size: 56 Copynumber: 4.2 Consensus size: 56
32842637 CAAGTTATGA
32842647 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
32842703 TATGATATATATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
1 TATGATATATATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* ** *
32842760 TATGAAATATATTTATGTATTATGTTGGTTGTGTAAGTTATGATATGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
* *
32842816 TATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TA
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
32842868 TATGATATATA
1 TATGATATATA
32842879 ATAAATATTA
Statistics
Matches: 161, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
52 12 0.07
53 3 0.02
54 1 0.01
55 4 0.02
56 89 0.55
57 51 0.32
58 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (56 bp):
TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
Found at i:32842776 original size:113 final size:112
Alignment explanation
Indices: 32842647--32842857 Score: 352
Period size: 113 Copynumber: 1.9 Consensus size: 112
32842637 CAAGTTATGA
*
32842647 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
32842712 TATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
66 TATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
** *
32842760 TATGAAATATATTTATGTATTATGTTGGTTGTGTAAGTTATGATATGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
*
32842825 TATTTATGTATTATGTAAGTTTTGTAAGTTATG
66 TATTTATGTATTATGTAAGTTGTGTAAGTTATG
32842858 TAAGTTATTA
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
111 1 0.01
112 25 0.27
113 66 0.72
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (112 bp):
TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
TATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
Found at i:32842821 original size:13 final size:13
Alignment explanation
Indices: 32842803--32842832 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32842793 TAAGTTATGA
32842803 TATGATATATATT
1 TATGATATATATT
32842816 TATGATATATATT
1 TATGATATATATT
32842829 TATG
1 TATG
32842833 TATTATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:32842852 original size:9 final size:9
Alignment explanation
Indices: 32842835--32842865 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32842825 TATTTATGTA
32842835 TTATGTAAG
1 TTATGTAAG
*
32842844 TTTTGTAAG
1 TTATGTAAG
32842853 TTATGTAAG
1 TTATGTAAG
32842862 TTAT
1 TTAT
32842866 TATATGATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (9 bp):
TTATGTAAG
Found at i:32843019 original size:21 final size:21
Alignment explanation
Indices: 32842949--32843019 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
32842939 TGTAATTTAA
32842949 AAAATTGTGTCGTGATTAAATTGC
1 AAAATTGTGTCGTGATT-AA-T-C
* *
32842973 AAAATATGTGTCGTAATTTAA-A
1 AAAAT-TGTGTCGTGA-TTAATC
*
32842995 AAAATTGTGTCCTGATTAATC
1 AAAATTGTGTCGTGATTAATC
32843016 AAAA
1 AAAA
32843020 ATAAATTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
20 4 0.10
21 12 0.31
22 5 0.13
24 5 0.13
25 11 0.28
26 2 0.05
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.35
Consensus pattern (21 bp):
AAAATTGTGTCGTGATTAATC
Found at i:32843029 original size:15 final size:16
Alignment explanation
Indices: 32843009--32843038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32842999 TTGTGTCCTG
32843009 ATTAAT-CAAAAATAA
1 ATTAATCCAAAAATAA
32843024 ATTAATCCAAAAATA
1 ATTAATCCAAAAATA
32843039 TGTAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (16 bp):
ATTAATCCAAAAATAA
Found at i:32843315 original size:37 final size:37
Alignment explanation
Indices: 32843272--32843362 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 37
32843262 AAATTATATT
*
32843272 AATTGATAAATATTGAAATAT-TG-AAAT-ATATTTAA
1 AATTGATAAATATTGAAATATAAGCAAATCAT-TTTAA
32843307 AATGTTGAT-AA-A-TGAAATATAAGCAAATCATTTTAA
1 AA--TTGATAAATATTGAAATATAAGCAAATCATTTTAA
32843343 AATTGATAAATATTGAAATA
1 AATTGATAAATATTGAAATA
32843363 CATTAAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
34 13 0.28
35 6 0.13
36 14 0.30
37 14 0.30
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (37 bp):
AATTGATAAATATTGAAATATAAGCAAATCATTTTAA
Found at i:32845340 original size:58 final size:59
Alignment explanation
Indices: 32845220--32845348 Score: 179
Period size: 59 Copynumber: 2.2 Consensus size: 59
32845210 TTTCAAATTG
* * * ** * *
32845220 GGGAGAAAGGGGTAATTATTTTAGGGTTTTGAATTAGGGAAAATGAAGGGAATAAACTA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCGAAGAAGGGAAAATGAAGGAAATAAACCA
*
32845279 GGGAGAAGGGGGTGATTATTTTAGGGATTCGAAGAAGGGAAAATG-AGGAAATAAACCA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCGAAGAAGGGAAAATGAAGGAAATAAACCA
32845337 GGGAGAAGGGGG
1 GGGAGAAGGGGG
32845349 AACTCGGTGT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
58 23 0.37
59 39 0.63
ACGTcount: A:0.38, C:0.03, G:0.38, T:0.21
Consensus pattern (59 bp):
GGGAGAAGGGGGTAATTATTTTAGGGATTCGAAGAAGGGAAAATGAAGGAAATAAACCA
Done.