Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 101 of 373
Found at i:32845547 original size:114 final size:115
Alignment explanation
Indices: 32845417--32845956 Score: 438
Period size: 114 Copynumber: 4.7 Consensus size: 115
32845407 TAACATTTGC
* *
32845417 GGCGTTT-TCACCTAGCGCCGCTAAAGGCAAACCAATTGCGGCGTTTTAACAT-AAACGCCACTA
1 GGCGTTTATAACCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACATAAAACGCCACTA
*
32845480 AAAAAACAAACAAAACGACACCGTTTTGATATAAACAGAATAAACTTTAGT
66 AAAAACCAAA-AAAACGACACCGTTTTGATATAAACAGAATAAACTTTAGT
* * * * * * * * * *
32845531 GCCGTTT-T-TCCGTAGCGCCGCTAGAGGCAAATCAATTGCTGTGTTTCACCTTAAAACGCCACT
1 GGCGTTTATAACC-TAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACATAAAACGCCACT
* * * *
32845594 AAAAATCCAAAAAAAACGACGA-TGTTTTCATATGAACAGAAT-AACATTTAGT
65 AAAAAACC-AAAAAAACGAC-ACCGTTTTGATATAAACAGAATAAAC-TTTAGT
* * * * * * *
32845646 GGCATTTTATCACCAAGCGCCGCTAAAGGCGAAA-CTATTCCGGCGTTTTACCCTAAAACGCTAC
1 GGC-GTTTATAACCTAGCGCCGCTAAAGGC-AAACCTATTGCGGCGTTTTAACATAAAACGCCAC
* * * * * * * * *
32845710 TAATAATCGAATAAAACTACATCATTTTGATATAAACA-AATTAACCATTAGT
64 TAAAAAACCAAAAAAACGACACCGTTTTGATATAAACAGAA-TAAACTTTAGT
* * * *
32845762 GGCGTTTAT-ACCTTAGCGCCACTAAA-TCAAACCTATTGTGGCGTTTGAACCA-AAAACGCCAC
1 GGCGTTTATAACC-TAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAA-CATAAAACGCCAC
* * * * * * *
32845824 TAAAAATCCATAAAAACTACACCGTTTTGATCTAAACAAAATAACCCTTAGT
64 TAAAAAACCAAAAAAACGACACCGTTTTGATATAAACAGAATAAACTTTAGT
* * * ** *
32845876 GGCGTTTATAACCTTGCGCCGCTAAA-TCAACCCTATTTTGGCGTTTTAACCTAAAACGCCACTA
1 GGCGTTTATAACCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACATAAAACGCCACTA
*
32845940 AAAATCCAAAGAAAACG
66 AAAAACCAAA-AAAACG
32845957 GTGTCGTCTT
Statistics
Matches: 345, Mismatches: 62, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
113 6 0.02
114 171 0.50
115 79 0.23
116 37 0.11
117 47 0.14
118 5 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.25
Consensus pattern (115 bp):
GGCGTTTATAACCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACATAAAACGCCACTA
AAAAACCAAAAAAACGACACCGTTTTGATATAAACAGAATAAACTTTAGT
Found at i:32846832 original size:22 final size:22
Alignment explanation
Indices: 32846802--32846876 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
32846792 TGGGGTTTAA
* *
32846802 TTAGGGTTTTAAAGGTTATAGT
1 TTAGTGTTTTAGAGGTTATAGT
* * **
32846824 TTAGTG-TTTAGTGTTTAGGGGT
1 TTAGTGTTTTAGAGGTTA-TAGT
* *
32846846 TTAGTGTTTTAGGGGTTATAGA
1 TTAGTGTTTTAGAGGTTATAGT
32846868 TTAGTGTTT
1 TTAGTGTTT
32846877 ATGTTTTTTG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 8 0.20
22 23 0.57
23 9 0.22
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (22 bp):
TTAGTGTTTTAGAGGTTATAGT
Found at i:32846858 original size:16 final size:16
Alignment explanation
Indices: 32846829--32846907 Score: 62
Period size: 16 Copynumber: 5.2 Consensus size: 16
32846819 ATAGTTTAGT
32846829 GTTTAGTG-TTTAGGG
1 GTTTAGTGTTTTAGGG
32846844 GTTTAGTGTTTTAGGG
1 GTTTAGTGTTTTAGGG
* *
32846860 G-TTA-TAG-ATTA-GT
1 GTTTAGT-GTTTTAGGG
*
32846873 GTTTA-TGTTTTTTGGG
1 GTTTAGTG-TTTTAGGG
*
32846889 GTTTAGGGTTTTAGGG
1 GTTTAGTGTTTTAGGG
32846905 GTT
1 GTT
32846908 AAATGACTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
13 3 0.06
14 8 0.16
15 14 0.28
16 24 0.48
17 1 0.02
ACGTcount: A:0.14, C:0.00, G:0.35, T:0.51
Consensus pattern (16 bp):
GTTTAGTGTTTTAGGG
Found at i:32846863 original size:44 final size:45
Alignment explanation
Indices: 32846802--32846908 Score: 153
Period size: 44 Copynumber: 2.4 Consensus size: 45
32846792 TGGGGTTTAA
** *
32846802 TTAGGGTTTTAAAGGTTATAGTTTAGTGTTTA-GTGTTTAGGGGT
1 TTAGGGTTTTAGGGGTTATAGATTAGTGTTTATGTGTTTAGGGGT
* * *
32846846 TTAGTGTTTTAGGGGTTATAGATTAGTGTTTATGTTTTTTGGGGT
1 TTAGGGTTTTAGGGGTTATAGATTAGTGTTTATGTGTTTAGGGGT
32846891 TTAGGGTTTTAGGGGTTA
1 TTAGGGTTTTAGGGGTTA
32846909 AATGACTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 28 0.51
45 27 0.49
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.50
Consensus pattern (45 bp):
TTAGGGTTTTAGGGGTTATAGATTAGTGTTTATGTGTTTAGGGGT
Found at i:32846967 original size:41 final size:41
Alignment explanation
Indices: 32846915--32847105 Score: 143
Period size: 41 Copynumber: 4.7 Consensus size: 41
32846905 GTTAAATGAC
32846915 TTTTAGCGGCGTTTTTGGTAAAACGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGGTAAAACGCCACTAATGCTCTGGT
* **** * * ** * *
32846956 TTTTAGTGGCGTTTTACACAAAGCACTGCTAATTCTTTGGT
1 TTTTAGCGGCGTTTTTGGTAAAACGCCACTAATGCTCTGGT
* * *** *
32846997 TTTTAGTGACG-TTTTACCAAAAGCGCCACTAATGCTCTGGC
1 TTTTAGCGGCGTTTTTGGTAAAA-CGCCACTAATGCTCTGGT
* * * * *
32847038 TTTTAGCGGCGTTTTGGGTAAAACACCACTATTGCTATGTT
1 TTTTAGCGGCGTTTTTGGTAAAACGCCACTAATGCTCTGGT
*
32847079 TTTTGGCGGCGTTTTCT-GTAAAACGCC
1 TTTTAGCGGCGTTTT-TGGTAAAACGCC
32847106 GCTATTTCTA
Statistics
Matches: 111, Mismatches: 36, Indels: 6
0.73 0.24 0.04
Matches are distributed among these distances:
40 7 0.06
41 97 0.87
42 7 0.06
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTGGTAAAACGCCACTAATGCTCTGGT
Found at i:32847111 original size:41 final size:40
Alignment explanation
Indices: 32846996--32847195 Score: 159
Period size: 41 Copynumber: 4.9 Consensus size: 40
32846986 AATTCTTTGG
* * * * * * *
32846996 TTTTTAGTGACGTTTTACCAAAAGCGCCACTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTAT-A
* **** * * *
32847037 CTTTTAGCGGCGTTTTGGGTAAAACACCACTATTGCTATGT
1 TTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTAT-A
* ** *
32847078 TTTTTGGCGGCGTTTT-CTGTAAAACGCCGCTATTTCTATAA
1 TTTTTAGCGGCGTTTTAC-CAAAAACGCCGCTATTGCTAT-A
* *
32847119 TTTTTAGCTGCGTTTTACCAAAAACGCCGCTATTGCTCTA
1 TTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTATA
*
32847159 TTTTTAGTGGCGTTTTACCAAAAACGCCGCTATTGCT
1 TTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCT
32847196 CTGCGTTTTA
Statistics
Matches: 129, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 36 0.28
41 92 0.71
42 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTATA
Found at i:32847133 original size:123 final size:122
Alignment explanation
Indices: 32846913--32847174 Score: 285
Period size: 123 Copynumber: 2.1 Consensus size: 122
32846903 GGGTTAAATG
* * * *
32846913 ACTTTTAGCGGCGTTTTTGGTAAAACGCCACTAATGCTCTGGTTTTTAGTGGCGTTTTACACAAA
1 ACTTTTAGCGGCGTTTTGGGTAAAACACCACTAATGCTATGGTTTTTAGCGGCGTTTTACACAAA
* * * ** *
32846978 GCACTGCTAATTCTTTGGTTTTTAGTGACGTTTTACCAAAAGCGCCACTAATGCTCT
66 ACACCGCTAATTCTATAATTTTTAGTGACGTTTTACCAAAAACGCCACTAATGCTCT
* * * * **
32847035 GGCTTTTAGCGGCGTTTTGGGTAAAACACCACTATTGCTATGTTTTTTGGCGGCGTTTT-CTGTA
1 -ACTTTTAGCGGCGTTTTGGGTAAAACACCACTAATGCTATGGTTTTTAGCGGCGTTTTAC-ACA
* * * *
32847099 AAACGCCGCTATTTCTATAATTTTTAGCTG-CGTTTTACCAAAAACGCCGCTATTGCTCT
64 AAACACCGCTAATTCTATAATTTTTAG-TGACGTTTTACCAAAAACGCCACTAATGCTCT
* *
32847158 ATTTTTAGTGGCGTTTT
1 ACTTTTAGCGGCGTTTT
32847175 ACCAAAAACG
Statistics
Matches: 114, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
122 15 0.13
123 97 0.85
124 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (122 bp):
ACTTTTAGCGGCGTTTTGGGTAAAACACCACTAATGCTATGGTTTTTAGCGGCGTTTTACACAAA
ACACCGCTAATTCTATAATTTTTAGTGACGTTTTACCAAAAACGCCACTAATGCTCT
Found at i:32851120 original size:7 final size:7
Alignment explanation
Indices: 32851110--32851135 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32851100 AGGAGAGAAT
32851110 GATGAGG
1 GATGAGG
32851117 GATGAGG
1 GATGAGG
32851124 GATGAGG
1 GATGAGG
32851131 GATGA
1 GATGA
32851136 TTGAAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.54, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:32868656 original size:40 final size:40
Alignment explanation
Indices: 32868547--32868774 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
32868537 TATTCGGATG
* * * * *
32868547 ATAACCAGGTTAAGTCCCGAAGGTATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
32868587 A-ATTTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32868626 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32868666 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32868706 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32868746 ATAACTGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
32868775 AGCAAGTAGG
Statistics
Matches: 173, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 34 0.20
40 139 0.80
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32870932 original size:28 final size:27
Alignment explanation
Indices: 32870875--32871026 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32870865 TAAATTGTGC
*
32870875 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
32870902 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
32870930 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32870957 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
32870985 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32871012 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32871027 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:32870939 original size:55 final size:55
Alignment explanation
Indices: 32870875--32871026 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32870865 TAAATTGTGC
*
32870875 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
32870930 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
32870985 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
32871027 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:32878914 original size:27 final size:27
Alignment explanation
Indices: 32878881--32879031 Score: 257
Period size: 27 Copynumber: 5.6 Consensus size: 27
32878871 TAAATTGTGC
*
32878881 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
32878908 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
32878936 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
32878963 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
32878990 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32879017 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32879032 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
27 92 0.77
28 27 0.23
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:32880884 original size:40 final size:40
Alignment explanation
Indices: 32880687--32880870 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
32880677 CGAATGATGT
* * * * *
32880687 CCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32880727 CCGGACTAAGAT-CCGAAGGCACTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32880767 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32880805 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32880846 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32880871 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 80 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32880892 original size:79 final size:79
Alignment explanation
Indices: 32880739--32880893 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
32880729 GGACTAAGAT
* **
32880739 CCGAAGGCACTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCACTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
32880804 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
32880818 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCACTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
32880881 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
32880894 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCACTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:32888834 original size:39 final size:41
Alignment explanation
Indices: 32888734--32888917 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
32888724 TCGAATGATG
* * *
32888734 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
32888773 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32888813 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
32888852 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
32888892 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32888918 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 46 0.37
40 70 0.56
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:32888939 original size:79 final size:79
Alignment explanation
Indices: 32888789--32888940 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
32888779 CTAAGATCCG
* **
32888789 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
32888854 CGGGTTAAGTCCCA
66 CGGGTTAAGTCCCA
* * *
32888868 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
32888931 ATCC-GGTTAA
63 ATCCGGGTTAA
32888941 ATTCCGAAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGTCCCA
Found at i:32891220 original size:13 final size:13
Alignment explanation
Indices: 32891202--32891226 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32891192 GGTTTGTTTA
32891202 TTAAACTAATTAT
1 TTAAACTAATTAT
32891215 TTAAACTAATTA
1 TTAAACTAATTA
32891227 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:32892649 original size:40 final size:40
Alignment explanation
Indices: 32892604--32892745 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
32892594 AAATCGGGTA
*
32892604 TATATATGACACTTAGTGTGCGATTCAATATAGCTTCGGC
1 TATATATGACACTTAGTGTGCGATTCAACATAGCTTCGGC
* * *
32892644 TATATATGGCACTAAGTGTGTGATTCAACATAGCTTCGGC
1 TATATATGACACTTAGTGTGCGATTCAACATAGCTTCGGC
* * * * *
32892684 TATATAT-AGCACTTAGTGTGTGAGATCGAGATAGCTTCCGC
1 TATATATGA-CACTTAGTGTGCGA-TTCAACATAGCTTCGGC
* *
32892725 TATATATGGCACTTTGTGTGC
1 TATATATGACACTTAGTGTGC
32892746 TAGATATCAA
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
40 56 0.65
41 30 0.35
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (40 bp):
TATATATGACACTTAGTGTGCGATTCAACATAGCTTCGGC
Found at i:32900040 original size:34 final size:33
Alignment explanation
Indices: 32900002--32900109 Score: 105
Period size: 34 Copynumber: 3.2 Consensus size: 33
32899992 TCTGTGCCTA
32900002 AGCCCATATTAGTAACAGTAGCAAACTGGAGCTT
1 AGCCCATATTAGTAACAGTAGCAAACTGG-GCTT
* *
32900036 AGCCCAT-TTCAGTAACAGTAGC--AGTGGGGCCTA
1 AGCCCATATT-AGTAACAGTAGCAAACT-GGG-CTT
* * *
32900069 AGCCCATATCAGTAACAGTGGCAATCTGGGCATT
1 AGCCCATATTAGTAACAGTAGCAAACTGGGC-TT
32900103 AGCCCAT
1 AGCCCAT
32900110 TACAGAATCA
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
32 3 0.05
33 25 0.42
34 31 0.52
35 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (33 bp):
AGCCCATATTAGTAACAGTAGCAAACTGGGCTT
Found at i:32900081 original size:33 final size:34
Alignment explanation
Indices: 32899997--32900097 Score: 116
Period size: 34 Copynumber: 3.0 Consensus size: 34
32899987 TACATTCTGT
*
32899997 GCCTAAGCCCATATTAGTAACAGTAGCAAACTGGA
1 GCCTAAGCCCATATCAGTAACAGTAGC-AACTGGA
* * * *
32900032 G-CTTAGCCCATTTCAGTAACAGTAGC-AGTGGG
1 GCCTAAGCCCATATCAGTAACAGTAGCAACTGGA
*
32900064 GCCTAAGCCCATATCAGTAACAGTGGCAATCTGG
1 GCCTAAGCCCATATCAGTAACAGTAGCAA-CTGG
32900098 GCATTAGCCC
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
32 5 0.09
33 22 0.41
34 23 0.43
35 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (34 bp):
GCCTAAGCCCATATCAGTAACAGTAGCAACTGGA
Found at i:32900105 original size:67 final size:66
Alignment explanation
Indices: 32899997--32900126 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 66
32899987 TACATTCTGT
* *
32899997 GCCTAAGCCCATATTAGTAACAGTAGCAAACTGGAGCTTAGCCCATTTCAGTAA-CAGTAGCAGT
1 GCCTAAGCCCATATCAGTAACAGTAGCAAACTGGAGCTTAGCCCATTACAG-AATCAGT-GCAGT
32900061 GGG
64 GGG
* *
32900064 GCCTAAGCCCATATCAGTAACAGTGGCAATCTGG-GCATTAGCCCATTACAGAATCAGTGCAGT
1 GCCTAAGCCCATATCAGTAACAGTAGCAAACTGGAGC-TTAGCCCATTACAGAATCAGTGCAGT
32900127 ATGCAAACAG
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
66 9 0.16
67 48 0.84
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (66 bp):
GCCTAAGCCCATATCAGTAACAGTAGCAAACTGGAGCTTAGCCCATTACAGAATCAGTGCAGTGG
G
Found at i:32901264 original size:39 final size:39
Alignment explanation
Indices: 32901210--32901315 Score: 176
Period size: 39 Copynumber: 2.7 Consensus size: 39
32901200 TTCAGCGATG
*
32901210 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
* *
32901249 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
*
32901288 TATATCCGGACTTAAGGTCCGCAGGCTA
1 TATATCCGGACTTAGGGTCCGCAGGCTA
32901316 CATGCTGGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
Found at i:32901322 original size:39 final size:39
Alignment explanation
Indices: 32901210--32901353 Score: 173
Period size: 39 Copynumber: 3.7 Consensus size: 39
32901200 TTCAGCGATG
* * *
32901210 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
32901249 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
** *
32901288 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
32901327 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAGGT-CCGCAGGCT
32901354 TCGAGCTGGT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 5 0.05
39 88 0.95
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:32901362 original size:39 final size:39
Alignment explanation
Indices: 32901279--32901393 Score: 101
Period size: 39 Copynumber: 2.9 Consensus size: 39
32901269 GCAGGCTATG
* * * *
32901279 TGCTGGAATTATATCCGGACTTAAGGT-CCGCAGGCTACA
1 TGCTGGAATTATGTCCGGGC-TAAAGTCCCGCAGGCTTCA
*
32901318 TGCTGGAAATATGTCCGGGCTAAAGTCCCGCAGGCTTCGA
1 TGCTGGAATTATGTCCGGGCTAAAGTCCCGCAGGCTTC-A
** * *
32901358 -GCTGGTTTTATG-CCGGGTTTAAATTCCCGCAGGCTT
1 TGCTGGAATTATGTCCGGG-CTAAAGTCCCGCAGGCTT
32901394 GTACTGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
38 10 0.16
39 52 0.83
40 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
TGCTGGAATTATGTCCGGGCTAAAGTCCCGCAGGCTTCA
Found at i:32902259 original size:23 final size:23
Alignment explanation
Indices: 32902212--32902259 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
32902202 CCCATGCAGC
*
32902212 GCAACATAATATTATACATTGAT
1 GCAACATAATATTATACATGGAT
32902235 GCAACATACATA-TA-ACATGGTAT
1 GCAACATA-ATATTATACATGG-AT
32902258 GC
1 GC
32902260 TCAAATACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 5 0.23
23 14 0.64
24 3 0.14
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (23 bp):
GCAACATAATATTATACATGGAT
Found at i:32902432 original size:26 final size:27
Alignment explanation
Indices: 32902348--32902447 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
32902338 GGGTATTTCA
* *
32902348 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
*
32902375 GTCATTTTATCACCTGAGGGAAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
32902402 GTCATTTTATCACATGAGGG-AAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
*
32902428 GTCATCTTATCACATGAGGG
1 GTCATTTTATCACATGAGGG
32902448 TTTAGGTACG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 25 0.37
27 43 0.63
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (27 bp):
GTCATTTTATCACATGAGGGAAAAATC
Found at i:32905258 original size:43 final size:44
Alignment explanation
Indices: 32905211--32905348 Score: 135
Period size: 43 Copynumber: 3.2 Consensus size: 44
32905201 TTCCAGACGT
32905211 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGATAG
1 GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGATAG
*** * * *
32905254 GGTCTTACACAAAATCAAATAT-GATGCCGA-TGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGATAG
* *
32905296 GGTCTTACATGTAAATCATAA-GTCGATGCCAAC-GTCCCAAAT-G
1 GGTCTTACATGT-AATCA-AATATCGATGCCAACTGTCCCAGATAG
32905339 TGGTCTTACA
1 -GGTCTTACA
32905349 CGAAGACACA
Statistics
Matches: 76, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
42 25 0.33
43 26 0.34
44 25 0.33
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (44 bp):
GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGATAG
Found at i:32905300 original size:42 final size:43
Alignment explanation
Indices: 32905203--32905304 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
32905193 TGCCAACGTT
* ***
32905203 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTC
1 CCAGACATGGTCTTACACAAAATCAAATATCGATGCCACTGTC
* *
32905246 CCAGATAGGGTCTTACACAAAATCAAATAT-GATGCCGA-TGTC
1 CCAGACATGGTCTTACACAAAATCAAATATCGATGCC-ACTGTC
32905288 CCAGACATGGTCTTACA
1 CCAGACATGGTCTTACA
32905305 TGTAAATCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
CCAGACATGGTCTTACACAAAATCAAATATCGATGCCACTGTC
Found at i:32907019 original size:40 final size:40
Alignment explanation
Indices: 32906921--32907224 Score: 468
Period size: 40 Copynumber: 7.6 Consensus size: 40
32906911 TCCTCGTTCA
* * * * *
32906921 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32906960 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32907000 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32907040 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32907080 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32907120 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32907160 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32907200 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
32907225 ATATTCACTT
Statistics
Matches: 249, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 37 0.15
40 212 0.85
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32907247 original size:80 final size:79
Alignment explanation
Indices: 32906921--32907263 Score: 440
Period size: 80 Copynumber: 4.3 Consensus size: 79
32906911 TCCTCGTTCA
* * * * * *
32906921 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32906985 TTAACAACTCGCACG
66 TTATC-ACTCGCACG
32907000 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32907065 TTAACAACTCGCACG
66 TTATC-ACTCGCACG
32907080 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32907145 TTAATAACTCGCACG
66 TT-ATCACTCGCACG
* * * * *
32907160 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA
* *
32907224 TATATTCACTTAGCAC-
65 TTTA-TCAC-TCGCACG
* * *
32907240 AAAGCCTTCGGGATTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32907264 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
79 38 0.16
80 196 0.82
81 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTATCACTCGCACG
Found at i:32907247 original size:120 final size:118
Alignment explanation
Indices: 32906921--32907263 Score: 456
Period size: 120 Copynumber: 2.9 Consensus size: 118
32906911 TCCTCGTTCA
* * * * *
32906921 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
*
32906986 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TATC-ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
**
32907040 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
32907105 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
65 TT-ATCACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32907160 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * * * *
32907224 TATATTCACTTAGCAC-AAAGCCTTCGGGATTTAGCCCGGA
64 TTTA-TCAC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
32907264 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
119 37 0.19
120 155 0.78
121 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TATCACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32914452 original size:40 final size:40
Alignment explanation
Indices: 32914354--32914657 Score: 468
Period size: 40 Copynumber: 7.6 Consensus size: 40
32914344 TCCTCGTTCA
* * * * *
32914354 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32914393 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32914433 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32914473 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32914513 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32914553 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32914593 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32914633 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
32914658 ATATTCACTT
Statistics
Matches: 249, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 37 0.15
40 212 0.85
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32914680 original size:80 final size:79
Alignment explanation
Indices: 32914354--32914696 Score: 440
Period size: 80 Copynumber: 4.3 Consensus size: 79
32914344 TCCTCGTTCA
* * * * * *
32914354 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32914418 TTAACAACTCGCACG
66 TTATC-ACTCGCACG
32914433 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32914498 TTAACAACTCGCACG
66 TTATC-ACTCGCACG
32914513 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
32914578 TTAATAACTCGCACG
66 TT-ATCACTCGCACG
* * * * *
32914593 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA
* *
32914657 TATATTCACTTAGCAC-
65 TTTA-TCAC-TCGCACG
* * *
32914673 AAAGCCTTCGGGATTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32914697 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
79 38 0.16
80 196 0.82
81 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTATCACTCGCACG
Found at i:32914680 original size:120 final size:118
Alignment explanation
Indices: 32914354--32914696 Score: 456
Period size: 120 Copynumber: 2.9 Consensus size: 118
32914344 TCCTCGTTCA
* * * * *
32914354 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
*
32914419 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TATC-ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
**
32914473 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
32914538 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
65 TT-ATCACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32914593 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * * * *
32914657 TATATTCACTTAGCAC-AAAGCCTTCGGGATTTAGCCCGGA
64 TTTA-TCAC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
32914697 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
119 37 0.19
120 155 0.78
121 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TATCACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32918246 original size:6 final size:6
Alignment explanation
Indices: 32918235--32918357 Score: 128
Period size: 6 Copynumber: 20.2 Consensus size: 6
32918225 AACCAAAATG
*
32918235 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AG-AATC AGA-ATC
*
32918284 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATC AGTATC AGGTAA-C
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
* *
32918333 AGAATC AAAATC AGAATC AGTATC A
1 AGAATC AGAATC AGAATC AGAATC A
32918358 AGTAACAGAA
Statistics
Matches: 100, Mismatches: 7, Indels: 20
0.79 0.06 0.16
Matches are distributed among these distances:
5 7 0.07
6 80 0.80
7 11 0.11
8 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:32918288 original size:31 final size:31
Alignment explanation
Indices: 32918235--32918315 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 31
32918225 AACCAAAATG
32918235 AGAATCAG-AATCAGAATCAGTAACAGAATC
1 AGAATCAGAAATCAGAATCAGTAACAGAATC
*
32918265 AGAATCAGAAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAAATCAGA-ATCAGTAACAGAATC
32918296 AGAATCAG-AATCAGAATCAG
1 AGAATCAGAAATCAGAATCAG
32918316 AATCAGTATC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 18 0.39
31 28 0.61
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAGAAATCAGAATCAGTAACAGAATC
Found at i:32918294 original size:43 final size:43
Alignment explanation
Indices: 32918246--32918357 Score: 156
Period size: 43 Copynumber: 2.6 Consensus size: 43
32918236 GAATCAGAAT
*
32918246 CAGAATCAGTAA-CAGAATCAGAATCAGAAATCAATATTA-GTAA
1 CAGAATCAG-AATCAGAATCAGAATCAG-AATCAATATCAGGTAA
*
32918289 CAGAATCAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAATATCAGGTAA
* *
32918332 CAGAATCAAAATCAGAATCAGTATCA
1 CAGAATCAGAATCAGAATCAGAATCA
32918358 AGTAACAGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
42 11 0.17
43 52 0.83
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.20
Consensus pattern (43 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAATATCAGGTAA
Found at i:32918338 original size:31 final size:31
Alignment explanation
Indices: 32918301--32918377 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
32918291 GAATCAGAAT
* *
32918301 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
32918332 CAGAATCAAAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
32918363 CAGAATCTAAAATCA
1 CAGAATC-AAAATCA
32918378 AAATGTGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
31 36 0.84
32 7 0.16
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAAGTAA
Found at i:32918617 original size:27 final size:27
Alignment explanation
Indices: 32918518--32918619 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
32918508 GCTCAGTTAT
** * * *
32918518 CAGATATTGTGATAGAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGAAA
* *
32918545 TAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAAAGCCACCAGAAA
* *
32918571 CATATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAGAAA
* *
32918599 CAGATAATGTAGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
32918620 TTAACAGAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 5 0.08
27 49 0.80
28 7 0.11
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:32919326 original size:27 final size:27
Alignment explanation
Indices: 32919269--32919571 Score: 401
Period size: 27 Copynumber: 11.3 Consensus size: 27
32919259 GGGGCAAAAT
* * *
32919269 GGTAATTTTACCCTACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32919295 TGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32919322 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32919349 GGTAATTCTACCTTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32919376 GATAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32919403 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32919430 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32919457 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
32919484 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32919511 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
32919538 AGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
32919565 GGTAATT
1 GGTAATT
32919572 TTTTAAATCG
Statistics
Matches: 244, Mismatches: 32, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 14 0.06
27 230 0.94
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32919639 original size:27 final size:26
Alignment explanation
Indices: 32919609--32919950 Score: 263
Period size: 27 Copynumber: 12.7 Consensus size: 26
32919599 CTGTAAATCA
* *
32919609 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACG
*** **
32919636 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACG
* *** *
32919663 AAGGTATTTCAATAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAA-CG
32919689 AGGGATATTTTGGTAATTTTACAAACTG
1 AGGG-TATTTTGGTAATTTTACAAAC-G
* * *
32919717 GGGGTATTTTGATAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACG
*
32919743 AGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACG
* * *
32919770 AGGGGTATTTTGGTGATTTTATAAACAA
1 A-GGGTATTTTGGTAATTTTACAAAC-G
* *
32919798 AGGGTATTTTAGTAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACG
** *
32919824 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAA-CG
*
32919852 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACG
* * *
32919878 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAA-CG
* * * *
32919906 AGGATATTCTAGTAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACG
*
32919932 AGGGGTATTTTGTTAATTT
1 A-GGGTATTTTGGTAATTT
32919951 GGTAAACTAA
Statistics
Matches: 256, Mismatches: 47, Indels: 24
0.78 0.14 0.07
Matches are distributed among these distances:
26 9 0.04
27 239 0.93
28 8 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACG
Found at i:32919874 original size:108 final size:108
Alignment explanation
Indices: 32919689--32919957 Score: 421
Period size: 108 Copynumber: 2.5 Consensus size: 108
32919679 TTCACAAATC
* * ** * *
32919689 AGGGATATTTTGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTT
1 AGGG-TATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGTAAACCAAGGGTATTTT
32919754 GGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAA
65 GGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAA
*
32919798 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGTAAACCAAGGGTATTTTG
*
32919863 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
66 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAA
* * * *
32919906 AGGATATTCTAGTAATTTTACAAACTAGGGGTATTTTGTTAATTTGGTAAAC
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGTAAAC
32919958 TAAAGTATTT
Statistics
Matches: 148, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 144 0.97
109 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (108 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGTAAACCAAGGGTATTTTG
GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAA
Found at i:32919957 original size:54 final size:54
Alignment explanation
Indices: 32919689--32919950 Score: 371
Period size: 54 Copynumber: 4.8 Consensus size: 54
32919679 TTCACAAATC
* * * *
32919689 AGGGATATTTTGGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAACTA
1 AGGG-TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
32919744 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
32919798 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
32919852 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
32919906 AGGATATTCTAGTAATTTTACAAACTAGGGGTATTTTGTTAATTT
1 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
32919951 GGTAAACTAA
Statistics
Matches: 184, Mismatches: 23, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
54 181 0.98
55 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:32919959 original size:27 final size:27
Alignment explanation
Indices: 32919675--32919950 Score: 329
Period size: 27 Copynumber: 10.2 Consensus size: 27
32919665 GGTATTTCAA
* *
32919675 TAATTTCACAAA-TCAGGGATATTTTGG
1 TAATTTTACAAACT-AGGGGTATTTTGG
* *
32919702 TAATTTTACAAACTGGGGGTATTTTGA
1 TAATTTTACAAACTAGGGGTATTTTGG
32919729 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
*
32919756 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
* * * * *
32919783 TGATTTTATAAACAAAGGGTATTTTAG
1 TAATTTTACAAACTAGGGGTATTTTGG
32919810 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
** * *
32919837 TAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
*
32919864 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
* * * * * * *
32919891 TGATTTTATAAACCAAGGATATTCTAG
1 TAATTTTACAAACTAGGGGTATTTTGG
*
32919918 TAATTTTACAAACTAGGGGTATTTTGT
1 TAATTTTACAAACTAGGGGTATTTTGG
32919945 TAATTT
1 TAATTT
32919951 GGTAAACTAA
Statistics
Matches: 210, Mismatches: 38, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 209 1.00
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACTAGGGGTATTTTGG
Found at i:32922292 original size:37 final size:37
Alignment explanation
Indices: 32922185--32922292 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
32922175 AGCTCAGACG
* * *
32922185 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
32922222 AAATCTCCAAACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32922259 TAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGG
32922293 GATATATTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32922552 original size:47 final size:47
Alignment explanation
Indices: 32922500--32922646 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
32922490 CATACATATT
* * * *
32922500 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
32922547 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
32922594 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
32922641 TCACAT
1 TCACAT
32922647 AAAATCCTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:32922572 original size:22 final size:22
Alignment explanation
Indices: 32922546--32922621 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
32922536 GTTCATATTC
32922546 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
32922568 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
32922592 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32922615 ATCACAT
1 ATCACAT
32922622 ATATACACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32927215 original size:14 final size:15
Alignment explanation
Indices: 32927196--32927225 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32927186 GTTTATTATA
32927196 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
32927210 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
32927225 T
1 T
32927226 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:32929841 original size:93 final size:93
Alignment explanation
Indices: 32929728--32929899 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32929718 CGCCCATAAG
* *
32929728 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32929793 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
32929821 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32929886 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
32929900 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32929896 original size:46 final size:46
Alignment explanation
Indices: 32929721--32929896 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
32929711 TGTAACCCGC
* * *
32929721 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
32929767 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
32929817 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32929860 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32929897 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32933499 original size:27 final size:27
Alignment explanation
Indices: 32933468--32933645 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32933458 TAAATTGTAC
32933468 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32933495 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32933521 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32933549 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32933577 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32933604 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32933631 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32933646 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32933582 original size:82 final size:81
Alignment explanation
Indices: 32933469--32933624 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32933459 AAATTGTACA
* *
32933469 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32933533 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32933550 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32933615 TGCGAGTTGA
65 TGCGAATTGA
32933625 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32933636 original size:82 final size:81
Alignment explanation
Indices: 32933465--32933645 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32933455 GATTAAATTG
* *
32933465 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32933530 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32933546 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32933610 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32933628 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32933646 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32935112 original size:44 final size:43
Alignment explanation
Indices: 32935063--32935200 Score: 154
Period size: 43 Copynumber: 3.2 Consensus size: 43
32935053 TTCGGGCCTT
* *
32935063 GGCCTAGCAAGCTTTAA-ACTGGTGA-ATAATATTATCGGGCTTCG
1 GGCCTAGCAAGCTATAATACCGGTGAGAT-A-A-TATCGGGCTTCG
* *
32935107 GGCCTAGCAGGCTATAATGCCGGTGAGATAATATCGGGCTTCG
1 GGCCTAGCAAGCTATAATACCGGTGAGATAATATCGGGCTTCG
* * * *
32935150 GGCCTAGCAAGCTATAATGCCGGTGAAATGATATCGGGCTTCA
1 GGCCTAGCAAGCTATAATACCGGTGAGATAATATCGGGCTTCG
*
32935193 AGCCTAGC
1 GGCCTAGC
32935201 GGCGAAATGC
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
43 58 0.70
44 16 0.19
45 7 0.08
46 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (43 bp):
GGCCTAGCAAGCTATAATACCGGTGAGATAATATCGGGCTTCG
Found at i:32935142 original size:43 final size:43
Alignment explanation
Indices: 32935090--32935217 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 43
32935080 ACTGGTGAAT
*
32935090 AATATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* *
32935133 GATAATATCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** *
32935176 AATGATATCGGGCTTCAAGCCTAGC-GGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
32935217 A
1 A
32935218 TGAGTTTAGA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
41 12 0.16
42 3 0.04
43 61 0.80
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:32943740 original size:56 final size:55
Alignment explanation
Indices: 32943642--32943767 Score: 189
Period size: 56 Copynumber: 2.3 Consensus size: 55
32943632 AAACGAAATC
* * *
32943642 CGCACACACAGTGCCCACTAATGATCTCGCACACATATTGCTCGGTTAAAGAATT
1 CGCACACACAGTGCCCACTAACGATCTCGCACACATAGTGCTCGATTAAAGAATT
* *
32943697 CGCACACAAAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGATTAAAGAATT
1 CGCACACACAGTGCCCACT-AACGATCTCGCACACATAGTGCTCGATTAAAGAATT
*
32943753 CGTACACACAGTGCC
1 CGCACACACAGTGCC
32943768 TCAATTCATT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 18 0.29
56 45 0.71
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (55 bp):
CGCACACACAGTGCCCACTAACGATCTCGCACACATAGTGCTCGATTAAAGAATT
Found at i:32943984 original size:43 final size:43
Alignment explanation
Indices: 32943923--32944022 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 43
32943913 CTTTGCTCGA
** *
32943923 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAAGAACGAAGACCCAAATACAC
* * *
32943966 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAAGAACGAAGACCCAAATACAC
32944009 ATCACCGGCACGAA
1 ATCACCGGCACGAA
32944023 TGCCCTTTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.35, C:0.33, G:0.21, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAAGAACGAAGACCCAAATACAC
Found at i:32944065 original size:40 final size:40
Alignment explanation
Indices: 32944011--32944131 Score: 170
Period size: 40 Copynumber: 3.0 Consensus size: 40
32944001 GAATACACAT
* * ** *
32944011 CACCGGCACGAATGCCCTTTAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
32944051 CACCAGCACGAATGCTCTTCGGGAATTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
32944091 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
32944131 C
1 C
32944132 TCTCAATTCT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:32952396 original size:43 final size:43
Alignment explanation
Indices: 32952335--32952889 Score: 654
Period size: 43 Copynumber: 13.0 Consensus size: 43
32952325 TGTGATTTCA
* *
32952335 ATATGTGATTATGTGTAAGACCACGTCTGGGACGTTGGCATCT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
32952378 ATATGTGATTACGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
*
32952421 ATATGTGATTACGTGTAAGACCCCGTCTGGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * *
32952464 ATATGTGATTATGTGTAAGACCATGTCTTGGATGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * *
32952507 ATAAGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCA
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
32952550 ATATGTGATTACGTGTAAGACCACGTCTAGGACATTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
32952593 ATATGTGATTACGTGTAAGACAACGTCTAGGACGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * *
32952636 ATATGTGATTACATGTAAGACAACGTCTGGGACATTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* ** *
32952679 ATATGTGATTACATGTAAGATGACGTCTGGGATGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * *
32952722 ATATGTGATTACGTATAAGACGACGTCTGAGATGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * * ***
32952765 ATATGTGATTATGTGTATGACCATGTCTGGGACATTAATATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * * * *
32952808 -TATTTGATT-TGTTTAAGACC-CTATTTGGGATAG-TGGCATCG
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCG
* * * *
32952849 ATATGTGATTACATGTAAGACCACATTTGGGACATTGGCAT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
32952890 TGTAAGATAT
Statistics
Matches: 442, Mismatches: 60, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
41 20 0.05
42 18 0.04
43 401 0.91
44 3 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:32955696 original size:30 final size:30
Alignment explanation
Indices: 32955662--32955722 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32955652 TCCTTAACTC
32955662 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
32955692 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
32955722 A
1 A
32955723 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:32957390 original size:47 final size:47
Alignment explanation
Indices: 32957230--32957595 Score: 633
Period size: 47 Copynumber: 7.7 Consensus size: 47
32957220 GCCCTTCGGG
*
32957230 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATAAATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACAT--ATATAC
*
32957280 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32957329 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32957376 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32957423 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
32957470 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32957517 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATCTAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32957564 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
32957596 ATACTATCAT
Statistics
Matches: 308, Mismatches: 6, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
47 223 0.72
49 79 0.26
50 4 0.01
51 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:32957463 original size:22 final size:23
Alignment explanation
Indices: 32957430--32957510 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
32957420 TACACTTTCA
32957430 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
32957453 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
32957477 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
32957500 CATT-ATCACAT
1 CATTCATCACAT
32957511 ATATATACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:32957486 original size:25 final size:24
Alignment explanation
Indices: 32957408--32957488 Score: 67
Period size: 25 Copynumber: 3.4 Consensus size: 24
32957398 CCATTAGGCC
32957408 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
32957432 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
32957455 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
32957479 TTCATCACAT
1 TT-ATCACAT
32957489 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 14, Indels: 7
0.65 0.23 0.12
Matches are distributed among these distances:
22 7 0.18
23 8 0.21
24 10 0.26
25 14 0.36
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (24 bp):
TTATCACATATATACACTTTCACA
Found at i:32964120 original size:30 final size:30
Alignment explanation
Indices: 32964105--32964206 Score: 152
Period size: 30 Copynumber: 3.4 Consensus size: 30
32964095 AACCAAAATG
32964105 AGAATCAGAATCAGAATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
32964135 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
* * *
32964165 AGAATCAGAATAAGAATTTCGTGACAGAATC
1 AGAATCAGAATCAGAA-TTAGTAACAGAATC
32964196 AGAATCAGAAT
1 AGAATCAGAAT
32964207 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.02
30 41 0.62
31 24 0.36
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.22
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:32964201 original size:6 final size:6
Alignment explanation
Indices: 32964105--32964181 Score: 79
Period size: 6 Copynumber: 12.8 Consensus size: 6
32964095 AACCAAAATG
* *
32964105 AGAATC AGAATC AGAATT AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
32964153 AGTAA-C AGAATC AGAATC AGAATA AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAAT
32964182 TTCGTGACAG
Statistics
Matches: 60, Mismatches: 5, Indels: 12
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.08
6 51 0.85
7 3 0.05
8 1 0.02
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:32964377 original size:27 final size:26
Alignment explanation
Indices: 32964324--32964396 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
32964314 AGCATGGCTG
* * *
32964324 CCAGAACAGAT-TCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
32964349 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
32964376 CCAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
32964397 ACCCACCTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.12
26 7 0.17
27 29 0.71
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:32964771 original size:27 final size:26
Alignment explanation
Indices: 32964709--32964788 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
32964699 ATCGGTCAAT
*
32964709 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGACAGAGTCACCAGA-AC
32964736 AGATATTGTGACAGAGTCACCAGAAC
1 AGATATTGTGACAGAGTCACCAGAAC
* * *
32964762 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGACAGAGTCACCAGAAC
32964789 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (26 bp):
AGATATTGTGACAGAGTCACCAGAAC
Found at i:32965017 original size:27 final size:27
Alignment explanation
Indices: 32964987--32965181 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
32964977 GGGGCAAAAT
* * *
32964987 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32965014 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32965041 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
32965068 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32965095 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32965122 AGTAATTCTACCCTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*** *
32965148 AAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32965175 AGTAATT
1 GGTAATT
32965182 TCACAATCAA
Statistics
Matches: 141, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 23 0.16
27 118 0.84
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32965131 original size:81 final size:80
Alignment explanation
Indices: 32964990--32965181 Score: 249
Period size: 81 Copynumber: 2.4 Consensus size: 80
32964980 GCAAAATGGT
* * * * * * *
32964990 AATTTTACCCCACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTATTTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
32965055 ACAAGGGTATTTCGAT
66 A-AAGGGTATTTCAAA
* * *
32965071 AATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTACAAGGGTATTTCAGTAATTCTACCCT
*
32965136 ATAGGGTATTTCAAA
66 AAAGGGTATTTCAAA
*
32965151 AATTCTACCCTACAGGGGTATTTCAGTAATT
1 AATTCTACCCTACAGGGGTATTTCGGTAATT
32965182 TCACAATCAA
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 39 0.41
81 56 0.59
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (80 bp):
AATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTACAAGGGTATTTCAGTAATTCTACCCT
AAAGGGTATTTCAAA
Found at i:32965216 original size:27 final size:27
Alignment explanation
Indices: 32965186--32965516 Score: 468
Period size: 27 Copynumber: 12.3 Consensus size: 27
32965176 GTAATTTCAC
* *
32965186 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32965213 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32965240 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
32965267 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32965294 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32965321 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32965348 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
32965375 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32965402 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
32965429 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32965456 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32965483 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32965510 AATCGAG
1 AATCGAG
32965517 AGTACTTTGG
Statistics
Matches: 270, Mismatches: 30, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 266 0.99
28 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:32966493 original size:56 final size:56
Alignment explanation
Indices: 32966407--32966592 Score: 354
Period size: 56 Copynumber: 3.3 Consensus size: 56
32966397 TTACAGACCA
*
32966407 TGGCATCGATATGTGATTTCAATATTTGTGTGCAAGTAAGACCCTATTTGGGACAG
1 TGGCATCGATATGTGATTCCAATATTTGTGTGCAAGTAAGACCCTATTTGGGACAG
32966463 TGGCATCGATATGTGATTCCAATATTTGTGTGCAAGTAAGACCCTATTTGGGACAG
1 TGGCATCGATATGTGATTCCAATATTTGTGTGCAAGTAAGACCCTATTTGGGACAG
*
32966519 TGGCATCGATATGTGATTCCAATATTTGTGTGCAAGTAATACCCTATTTGGGACAG
1 TGGCATCGATATGTGATTCCAATATTTGTGTGCAAGTAAGACCCTATTTGGGACAG
32966575 TGGCATCGATATGTGATT
1 TGGCATCGATATGTGATT
32966593 ACATGTAGGA
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 128 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCAATATTTGTGTGCAAGTAAGACCCTATTTGGGACAG
Found at i:32971334 original size:16 final size:15
Alignment explanation
Indices: 32971308--32971337 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32971298 TTCAACATCT
32971308 ATAAAACAGAGTAAC
1 ATAAAACAGAGTAAC
32971323 ATAAACACAGAGTAA
1 ATAAA-ACAGAGTAA
32971338 GCTACCATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.13, G:0.13, T:0.13
Consensus pattern (15 bp):
ATAAAACAGAGTAAC
Found at i:32974751 original size:27 final size:27
Alignment explanation
Indices: 32974693--32974846 Score: 69
Period size: 27 Copynumber: 5.7 Consensus size: 27
32974683 GCATACTTGA
* ***
32974693 ACCCTTATATGATAAAATGATGATTTT
1 ACCCTTATATGATAAAATGATCAAAAT
* *
32974720 GCCCTTATGTGATAAAATGATCAAAAT
1 ACCCTTATATGATAAAATGATCAAAAT
* * * * * *
32974747 ACCCTCAAAAGGTAAAATGACCGAAAT
1 ACCCTTATATGATAAAATGATCAAAAT
* * * * * *
32974774 ACCC-CATAGGGTAGAATGACCGAAAT
1 ACCCTTATATGATAAAATGATCAAAAT
* * *
32974800 ACCCCTATATGGTAAAATGA-CTATAAT
1 ACCCTTATATGATAAAATGATC-AAAAT
* * *
32974827 ACCCTTGTAAGGTAAAATGA
1 ACCCTTATATGATAAAATGA
32974847 CAGATTTGTT
Statistics
Matches: 100, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 24 0.24
27 76 0.76
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (27 bp):
ACCCTTATATGATAAAATGATCAAAAT
Found at i:32974793 original size:26 final size:26
Alignment explanation
Indices: 32974732--32974847 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 26
32974722 CCTTATGTGA
* * *
32974732 TAAAATGATCAAAATACCCTCAAAAGG
1 TAAAATGACCGAAATACCC-CATAAGG
*
32974759 TAAAATGACCGAAATACCCCATAGGG
1 TAAAATGACCGAAATACCCCATAAGG
* *
32974785 TAGAATGACCGAAATACCCCTATATGG
1 TAAAATGACCGAAATACCCC-ATAAGG
* **
32974812 TAAAATGA-CTATAATACCCTTGTAAGG
1 TAAAATGACCGA-AATACCC-CATAAGG
32974839 TAAAATGAC
1 TAAAATGAC
32974848 AGATTTGTTC
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 26 0.35
27 48 0.65
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.22
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCCATAAGG
Found at i:32974925 original size:23 final size:23
Alignment explanation
Indices: 32974882--32974931 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
32974872 CTATATTTGA
32974882 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
32974905 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
32974928 GCAT
1 GCAT
32974932 TGCATGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:32975218 original size:18 final size:18
Alignment explanation
Indices: 32975189--32975247 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
32975179 TCTGCTTCCA
*
32975189 TACTACACTGATTACTAT
1 TACTGCACTGATTACTAT
* * *
32975207 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-AT
*
32975225 TACTGCACTGATTTCTAT
1 TACTGCACTGATTACTAT
32975243 TACTG
1 TACTG
32975248 AAATGGGCTA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (18 bp):
TACTGCACTGATTACTAT
Found at i:32977683 original size:42 final size:43
Alignment explanation
Indices: 32977594--32977691 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 43
32977584 CCTAGACGTG
* *
32977594 GTCTTACATGTAATCAAACATCAATGCCATTGTCCCAGACAGG
1 GTCTTACATGTAATCAAACATCAATGCCATTGTCCCAAACAGA
* * *
32977637 GTCTTACATG-AACTCAAATA-CGATGCCGA-TGTCCCAAACATA
1 GTCTTACATGTAA-TCAAACATCAATGCC-ATTGTCCCAAACAGA
*
32977679 GTCTTAAATGTAA
1 GTCTTACATGTAA
32977692 AACAGAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
GTCTTACATGTAATCAAACATCAATGCCATTGTCCCAAACAGA
Found at i:32991344 original size:43 final size:42
Alignment explanation
Indices: 32991297--32991395 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
32991287 TCCCAGGCGT
*
32991297 GGTCTTACATGTAATCAAATATCAATGC-CACTGTCCCAGACAA
1 GGTCTTACACGTAATCAAATA-CAATGCTCA-TGTCCCAGACAA
* * * *
32991340 GGTCTTACACGAAATCAAATACGATGCTGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATACAATGCTCATGTCCCAGACAA
32991382 GGTCTTACACGTAA
1 GGTCTTACACGTAA
32991396 ATCATAAGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 29 0.59
43 20 0.41
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATACAATGCTCATGTCCCAGACAA
Found at i:32991398 original size:43 final size:44
Alignment explanation
Indices: 32991276--32991399 Score: 141
Period size: 43 Copynumber: 2.9 Consensus size: 44
32991266 AAAGCTCATA
* * *
32991276 CAATGCCAAC-GTCCCAGGCGTGGTCTTACATGT-AATCAAATAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCAAATAT
*
32991319 CAATGCCACTGTCCCAGACAAGGTCTTACACG-AAATCAAATA-
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATAT
* *
32991361 CGATGCTGA-TGTCCCAGACATGGTCTTACACGTAAATCA
1 CAATGC-CACTGTCCCAGACATGGTCTTACACGTAAATCA
32991400 TAAGTCGATG
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
42 29 0.41
43 41 0.59
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (44 bp):
CAATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATAT
Found at i:32993667 original size:30 final size:30
Alignment explanation
Indices: 32993631--32993704 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 30
32993621 AACTCATGCT
32993631 CAACTTTTTATTTTTTTTCCAAACTTTGAG
1 CAACTTTTTATTTTTTTTCCAAACTTTGAG
** *
32993661 CAACTTTGCTT-TTTTTTTTTGAGACTTTGAG
1 CAACTTT--TTATTTTTTTTCCAAACTTTGAG
32993692 C-ACTCTTTTATTT
1 CAACT-TTTTATTT
32993705 GCTCTTATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
29 2 0.05
30 13 0.35
31 20 0.54
32 2 0.05
ACGTcount: A:0.19, C:0.16, G:0.09, T:0.55
Consensus pattern (30 bp):
CAACTTTTTATTTTTTTTCCAAACTTTGAG
Found at i:32994154 original size:20 final size:20
Alignment explanation
Indices: 32994117--32994153 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
32994107 GCATTCCATC
*
32994117 ACTTAAGATAACATAAAATA
1 ACTTAAGATAAAATAAAATA
32994137 ACTT-AGATAAAATAAAA
1 ACTTAAGATAAAATAAAA
32994154 AATCATGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (20 bp):
ACTTAAGATAAAATAAAATA
Found at i:32996596 original size:25 final size:25
Alignment explanation
Indices: 32996535--32996598 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
32996525 TAAAACTCAC
*
32996535 ATGAAAATTAAAAACAAAGATTAAA
1 ATGAAAATTAAAAACAAAGATAAAA
* *
32996560 ATTAAAATTAAAGACAAAGATAAAA
1 ATGAAAATTAAAAACAAAGATAAAA
32996585 ATGAGAAA-TAAAAA
1 ATGA-AAATTAAAAA
32996599 TAAAACTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 30 0.91
26 3 0.09
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.19
Consensus pattern (25 bp):
ATGAAAATTAAAAACAAAGATAAAA
Found at i:32998274 original size:12 final size:12
Alignment explanation
Indices: 32998252--32998286 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
32998242 CTACACGCCA
*
32998252 CATTCTATCTTTT
1 CATT-TATCTTTC
32998265 CATTTATCTTTC
1 CATTTATCTTTC
32998277 CATTTATCTT
1 CATTTATCTT
32998287 CTTTATTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (12 bp):
CATTTATCTTTC
Found at i:32998728 original size:17 final size:17
Alignment explanation
Indices: 32998691--32998737 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
32998681 AAAGTGATCA
32998691 AAAAAGTACAAAAAAAT
1 AAAAAGTACAAAAAAAT
32998708 -AAAA-TACGAAAAAAAT
1 AAAAAGTAC-AAAAAAAT
*
32998724 AAAAAATA-AAAAAA
1 AAAAAGTACAAAAAA
32998738 TTCTGTGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.11
16 18 0.67
17 4 0.15
18 2 0.07
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.11
Consensus pattern (17 bp):
AAAAAGTACAAAAAAAT
Found at i:33002369 original size:12 final size:12
Alignment explanation
Indices: 33002347--33002381 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
33002337 CTACACACCG
*
33002347 CATTCTATCTTTT
1 CATT-TATCTTTC
33002360 CATTTATCTTTC
1 CATTTATCTTTC
33002372 CATTTATCTT
1 CATTTATCTT
33002382 CTTTATTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (12 bp):
CATTTATCTTTC
Found at i:33005126 original size:16 final size:16
Alignment explanation
Indices: 33005105--33005137 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33005095 CTACAAACTG
33005105 AACCAAAAAGGCTAAT
1 AACCAAAAAGGCTAAT
33005121 AACCAAAAAGGCTAAT
1 AACCAAAAAGGCTAAT
33005137 A
1 A
33005138 CATTCTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.18, G:0.12, T:0.12
Consensus pattern (16 bp):
AACCAAAAAGGCTAAT
Found at i:33006124 original size:21 final size:21
Alignment explanation
Indices: 33006095--33006142 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
33006085 TGGGGAGACT
*
33006095 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACC-CTAC
*
33006116 ACTCCACCCTACCAGCCCTAC
1 ACTCCACCCTACCAACCCTAC
33006137 ACTCCA
1 ACTCCA
33006143 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.31, C:0.54, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCCTAC
Found at i:33007895 original size:26 final size:26
Alignment explanation
Indices: 33007864--33007971 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
33007854 TGAAATGCCC
*
33007864 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
33007890 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
33007916 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
33007942 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33007968 ATCA
1 ATCA
33007972 ATTTTTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:33016805 original size:40 final size:40
Alignment explanation
Indices: 33016433--33016798 Score: 583
Period size: 40 Copynumber: 9.2 Consensus size: 40
33016423 AACCCAAGTA
* *
33016433 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
33016472 CCTTCGGGACTTAGCCTGGATATATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33016512 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33016552 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33016592 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** *
33016632 CCTTTAGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
33016672 CCTTTGGGACTTAGCCCAGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33016712 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
33016752 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
33016792 CCTTCGG
1 CCTTCGG
33016799 ATCTTAGTCT
Statistics
Matches: 301, Mismatches: 24, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.04
40 287 0.95
41 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:33018911 original size:174 final size:175
Alignment explanation
Indices: 33018617--33018943 Score: 505
Period size: 175 Copynumber: 1.9 Consensus size: 175
33018607 TGAGATTGGC
* * * *
33018617 ACTAAGTGTGCGAGTTTACAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTG
1 ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
* ** *
33018682 TGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTC-GAT
66 TGCGAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAAAT
33018746 TTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
131 TTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
* * * * *
33018792 ACTAAGTGTGTGAGTTTAAAGTGCATGGCACTGAGTGTGCGTGGGTGATTACTAAACATTATGTG
1 ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
*
33018857 TGC-AACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGGCTTTACCGAGTCAAAT
66 TGCGAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAAAT
33018921 TTTGGACAGCGGAAAAGGTAAGT
131 TTTGGACAGCGGAAAAGGTAAGT
33018944 ACCTTGAGTT
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
174 64 0.47
175 73 0.53
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (175 bp):
ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
TGCGAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
Found at i:33021440 original size:13 final size:13
Alignment explanation
Indices: 33021424--33021451 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
33021414 TTTATTATTT
33021424 TTAACACAAAATA
1 TTAACACAAAATA
33021437 TTAACACAAAATA
1 TTAACACAAAATA
33021450 TT
1 TT
33021452 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:33027448 original size:40 final size:40
Alignment explanation
Indices: 33026996--33027441 Score: 743
Period size: 40 Copynumber: 11.2 Consensus size: 40
33026986 AACCCAAGTA
* * *
33026996 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
33027035 CCTTCGGGACTTAGCCCGGATATATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33027075 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
33027115 CCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
33027155 CCTTCGGGACTTAGCCCGGATATAATAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
33027195 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33027235 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
33027275 CCTTTGGGACTTAGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33027315 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
33027355 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
33027395 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
33027435 CCTTCGG
1 CCTTCGG
33027442 ATCTTAGTCC
Statistics
Matches: 387, Mismatches: 18, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 13 0.03
40 373 0.96
41 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:33028873 original size:13 final size:13
Alignment explanation
Indices: 33028857--33028884 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
33028847 TTTATTATTT
33028857 TTAACACAAAATA
1 TTAACACAAAATA
33028870 TTAACACAAAATA
1 TTAACACAAAATA
33028883 TT
1 TT
33028885 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:33042252 original size:15 final size:15
Alignment explanation
Indices: 33042204--33042283 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
33042194 GTATCTTGGG
*
33042204 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
33042219 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
33042234 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
33042249 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
33042264 TTTTTTTATTC-GGT
1 TTTCTTTATTCTGGA
33042278 TTTCTT
1 TTTCTT
33042284 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.79
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:33042264 original size:30 final size:30
Alignment explanation
Indices: 33042195--33042282 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
33042185 CATAGTATCG
* * * *
33042195 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
33042225 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
* *
33042255 TATCTTGGATTTTTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
33042283 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
29 8 0.16
30 40 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:33051797 original size:40 final size:40
Alignment explanation
Indices: 33051713--33051889 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
33051703 AAGCCAAGTA
* *
33051713 CCTTCGGGATTTAG-CCGGATATAGCT-ACTAGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATG
*
33051751 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
33051791 CCTTCGGGACTTAGCCTGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
33051831 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
*
33051871 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33051890 TTATCATCCA
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 14 0.11
39 17 0.14
40 93 0.75
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:33063288 original size:46 final size:46
Alignment explanation
Indices: 33063115--33063288 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
33063105 TGTAACCCGC
* * *
33063115 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
33063161 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
33063211 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
33063254 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
33063289 ATTGCTCAAT
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33063309 original size:46 final size:46
Alignment explanation
Indices: 33063166--33063309 Score: 131
Period size: 47 Copynumber: 3.1 Consensus size: 46
33063156 CGCATCCATA
*
33063166 AGTGAACTCGGACTCAACTCAACGAGTTCGGA-TGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTGCC-A-ATACATCT
* * *
33063213 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATT-CGC-ATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTGC-CAATACATCT
33063259 AGTGAACTCGGACTCAACTCAACGAGTTC-GATTGCTCAAT-CATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATTGC-CAATACAT-CT
33063305 AGTGA
1 AGTGA
33063310 CATGTCACTT
Statistics
Matches: 80, Mismatches: 7, Indels: 20
0.75 0.07 0.19
Matches are distributed among these distances:
43 3 0.04
44 5 0.06
45 4 0.05
46 31 0.39
47 32 0.40
48 1 0.01
49 2 0.03
50 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATTGCCAATACATCT
Found at i:33070817 original size:93 final size:93
Alignment explanation
Indices: 33070688--33070859 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
33070678 CGCCCATAAG
* *
33070688 CGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33070753 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
33070781 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
33070845 AACGAGTTCGGATGC
65 AACGAGTTCAGATGC
33070860 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:33070856 original size:46 final size:47
Alignment explanation
Indices: 33070681--33070853 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
33070671 TGTAACCCGC
* * *
33070681 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGACATTCGCAT
* * *
33070727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAG--GAC-A-TTCGCAT
*
33070777 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGACATTCGCAT
*
33070820 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
33070854 GGATGCTCAA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 60 0.56
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGACATTCGCAT
Found at i:33070875 original size:46 final size:46
Alignment explanation
Indices: 33070684--33070875 Score: 146
Period size: 46 Copynumber: 4.2 Consensus size: 46
33070674 AACCCGCCCA
* * * * * *
33070684 TAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCATCATCC
*
33070729 ATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * *** *
33070778 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
33070822 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
33070870 T-AGTGA
1 TAAGTGA
33070876 CATGTCACTT
Statistics
Matches: 114, Mismatches: 20, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 65 0.57
47 29 0.25
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:33076011 original size:40 final size:40
Alignment explanation
Indices: 33075956--33076036 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
33075946 CTTATATAAG
33075956 AATGAGTAGAACCGGGGTCAATCAAAGCAATTACATTAGT
1 AATGAGTAGAACCGGGGTCAATCAAAGCAATTACATTAGT
33075996 AATGAGTAGAACCGGGGTCAATCAAAGCAATTACATTAGT
1 AATGAGTAGAACCGGGGTCAATCAAAGCAATTACATTAGT
33076036 A
1 A
33076037 TCAAAGAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (40 bp):
AATGAGTAGAACCGGGGTCAATCAAAGCAATTACATTAGT
Found at i:33079009 original size:41 final size:41
Alignment explanation
Indices: 33078883--33079027 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 41
33078873 CTCGCACAAG
* * * * *
33078883 GCCTTCGGGTCTTAACTCGGATATGGTCGC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAT
33078923 GCCTTCGGGACTTAGCCCGGATATAGTCG-TTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAT
* * *
33078963 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAT
33079004 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
33079028 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 28 0.31
42 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.27
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAT
Found at i:33087026 original size:41 final size:39
Alignment explanation
Indices: 33086891--33087035 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 39
33086881 CTCGCACAAG
* * * * *
33086891 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
33086931 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
33086971 GCCTTCGGATCTTAGTCCGGATGTATTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
33087012 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTC-GGACTTAGCCCGGATAT
33087036 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:33089701 original size:29 final size:29
Alignment explanation
Indices: 33089642--33089774 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
33089632 CTGACTGATT
* * *
33089642 TCGCACACATAGCG-CTCGATTATAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
33089670 TCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
33089699 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
* * *
33089728 TCGCACACATAGCG-CTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
33089756 TTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
33089775 TAATTCCAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
27 1 0.01
28 32 0.37
29 53 0.61
30 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:33089710 original size:57 final size:57
Alignment explanation
Indices: 33089642--33089774 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 57
33089632 CTGACTGATT
* * *
33089642 TCGCACACATAGCG-CTCGATTA-TAGAACTCGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGCGCCTCAATTACCA-AACTCGCACACATAGCG-CTCAATTAAAGAAC
* * * *
33089699 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
* * *
33089756 TTGCACACACAGTGCCTCA
1 TCGCACACATAGCGCCTCA
33089775 TAATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 42 0.65
58 22 0.34
59 1 0.02
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (57 bp):
TCGCACACATAGCGCCTCAATTACCAAACTCGCACACATAGCGCTCAATTAAAGAAC
Found at i:33089846 original size:40 final size:40
Alignment explanation
Indices: 33089780--33090168 Score: 613
Period size: 40 Copynumber: 9.8 Consensus size: 40
33089770 CCTCATAATT
* * *
33089780 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACA
* * * *
33089819 CTAGAACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
* *
33089859 CTAGCACGAATGCTCCTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
* * *
33089899 CCAACACAAATGCTCTTCGGAACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
33089939 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
33089979 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
33090019 CCAGCACGAATGCTCTTCGGGACTTAACCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
33090059 CCAGCACGAATGCTCTTCGGGACTTAGCCCGAACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
33090099 CCAGCACGAATGCTCTTCGGGACTTAG-CCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
33090138 CCAGCACGAATGCTCTTCGGGACTTAGCCCG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCG
33090169 ACTATATAAC
Statistics
Matches: 326, Mismatches: 21, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
39 51 0.16
40 275 0.84
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:33091507 original size:37 final size:37
Alignment explanation
Indices: 33091454--33091556 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
33091444 CGGATAGTCC
*
33091454 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
33091491 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
33091528 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
33091557 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:33091783 original size:48 final size:48
Alignment explanation
Indices: 33091729--33091989 Score: 423
Period size: 48 Copynumber: 5.4 Consensus size: 48
33091719 GCCAAAACAC
**
33091729 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
33091777 TAGCCATTCGGCTTTACCACGTATATATATCTCGTACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
33091825 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
33091873 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
33091921 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
33091969 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
33091990 CACATATATA
Statistics
Matches: 199, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 199 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:33098865 original size:40 final size:40
Alignment explanation
Indices: 33098840--33098988 Score: 176
Period size: 40 Copynumber: 3.8 Consensus size: 40
33098830 GCAGGCTTCG
* * *
33098840 TGCTGGAGTGGTATCTGGGTTTAAAGTCCCGCAGGCTATA
1 TGCTGGAATGGTATCCGGGTTTAAAGACCCGCAGGCTATA
*
33098880 TGCTGGAATTGTATCCGGGTTTAAAGACCCGCAGGCTATA
1 TGCTGGAATGGTATCCGGGTTTAAAGACCCGCAGGCTATA
* * * * * *
33098920 TGCTAGAATTGTATCCGGGTTTAAAAACTCGTAGGCT-TCG
1 TGCTGGAATGGTATCCGGGTTTAAAGACCCGCAGGCTAT-A
*
33098960 TGCTGGAATGGAATCCGGG-TTAAAGACCC
1 TGCTGGAATGGTATCCGGGTTTAAAGACCC
33098989 ATAGGCTCGT
Statistics
Matches: 94, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
39 9 0.10
40 85 0.90
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (40 bp):
TGCTGGAATGGTATCCGGGTTTAAAGACCCGCAGGCTATA
Found at i:33108152 original size:13 final size:13
Alignment explanation
Indices: 33108134--33108158 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33108124 TATATTGTAT
33108134 GTGTGAAAATTTC
1 GTGTGAAAATTTC
33108147 GTGTGAAAATTT
1 GTGTGAAAATTT
33108159 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:33109354 original size:41 final size:41
Alignment explanation
Indices: 33109297--33109381 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
33109287 TGGTATCAAT
*
33109297 ATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCG
1 ATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCG
*
33109338 ATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATTG
1 ATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCG
33109379 ATA
1 ATA
33109382 CGTGACTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (41 bp):
ATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCG
Found at i:33109430 original size:56 final size:56
Alignment explanation
Indices: 33109338--33109581 Score: 303
Period size: 56 Copynumber: 4.4 Consensus size: 56
33109328 ATTGGCATCG
* * * * * *
33109338 ATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATTGATACGTGACTTCAAT
1 ATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTTCGAT
* * * *
33109394 ATATTTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTTCGAT
1 ATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTTCGAT
* *
33109450 ATATATGTCCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGA-TTCTGAT
1 ATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTTC-GAT
* * * *
33109506 ATATATGTGTGAGTAAGATCACATTTAATACGTTGGCATCGATAT-TAGACTTTGAT
1 ATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT-GACTTCGAT
*
33109562 ATATGTGTGCGAGTAAGACC
1 ATATATGTGCGAGTAAGACC
33109582 CTGTCTGGGA
Statistics
Matches: 164, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
55 4 0.02
56 158 0.96
57 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (56 bp):
ATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTTCGAT
Found at i:33109599 original size:112 final size:112
Alignment explanation
Indices: 33109349--33109612 Score: 270
Period size: 112 Copynumber: 2.4 Consensus size: 112
33109339 TATGTGTGCA
* * ** * * * * **
33109349 AGTAAGACCACGTTTAATACATTGGCATTGATACGTGACTTC-AATATATTTGTGCAAGTAAGAC
1 AGTAAGACCACGTTGAACATGTTGGCATCGATATGTGA-TTCTGATATATATGTGTGAGTAAGAC
*
33109413 CACGTTTAATACGTTGGCATCAATATGTGATTTCGATATATATGTCCG
65 CACATTTAATACGTTGGCATCAATATGTGATTTCGATATATATGTCCG
* * *
33109461 AGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATATATGTGTGAGTAAGATC
1 AGTAAGACCACGTTGAACATGTTGGCATCGATATGTGATTCTGATATATATGTGTGAGTAAGACC
* * *
33109526 ACATTTAATACGTTGGCATCGATAT-TAGACTTT-GATATATGTGTGCG
66 ACATTTAATACGTTGGCATCAATATGT-GA-TTTCGATATATATGTCCG
*
33109573 AGTAAGACC-CTGTCTGGGACA-G-TGGCATCGATATGTGATT
1 AGTAAGACCAC-GT-T-GAACATGTTGGCATCGATATGTGATT
33109613 ACATGTAAGA
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
111 5 0.04
112 118 0.91
113 5 0.04
114 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (112 bp):
AGTAAGACCACGTTGAACATGTTGGCATCGATATGTGATTCTGATATATATGTGTGAGTAAGACC
ACATTTAATACGTTGGCATCAATATGTGATTTCGATATATATGTCCG
Found at i:33118477 original size:10 final size:10
Alignment explanation
Indices: 33118464--33118502 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
33118454 ATATGTGAAT
33118464 ATATCATGGC
1 ATATCATGGC
33118474 ATATCATGTGC
1 ATATCATG-GC
33118485 ATATCATGGC
1 ATATCATGGC
33118495 ATATCATG
1 ATATCATG
33118503 TACAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:33118490 original size:21 final size:21
Alignment explanation
Indices: 33118464--33118503 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
33118454 ATATGTGAAT
33118464 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
33118485 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
33118504 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:33118571 original size:25 final size:25
Alignment explanation
Indices: 33118543--33118593 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
33118533 ACAACATAAC
* * * *
33118543 CCTAGGGGTATAATGGTTATTTTCA
1 CCTAGGGGCAAAAAGGTCATTTTCA
33118568 CCTAGGGGCAAAAAGGTCATTTTCA
1 CCTAGGGGCAAAAAGGTCATTTTCA
33118593 C
1 C
33118594 ATTATAAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAAAGGTCATTTTCA
Found at i:33124487 original size:10 final size:10
Alignment explanation
Indices: 33124474--33124513 Score: 71
Period size: 10 Copynumber: 3.9 Consensus size: 10
33124464 CATATGTGAA
33124474 CATATCATGG
1 CATATCATGG
33124484 CATATCATGTG
1 CATATCATG-G
33124495 CATATCATGG
1 CATATCATGG
33124505 CATATCATG
1 CATATCATG
33124514 TACAAAAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (10 bp):
CATATCATGG
Found at i:33124500 original size:21 final size:21
Alignment explanation
Indices: 33124474--33124514 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
33124464 CATATGTGAA
33124474 CATATCATGGCATATCATGTG
1 CATATCATGGCATATCATGTG
33124495 CATATCATGGCATATCATGT
1 CATATCATGGCATATCATGT
33124515 ACAAAAGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (21 bp):
CATATCATGGCATATCATGTG
Found at i:33124582 original size:25 final size:25
Alignment explanation
Indices: 33124554--33124604 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
33124544 ATAACATAAC
* *
33124554 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGTAAAAAGGTCATTTTCA
33124579 CCTAGGGGTAAAAAGGTCATTTTCA
1 CCTAGGGGTAAAAAGGTCATTTTCA
33124604 C
1 C
33124605 ATTATAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (25 bp):
CCTAGGGGTAAAAAGGTCATTTTCA
Done.