Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 103 of 373
Found at i:33551148 original size:51 final size:50
Alignment explanation
Indices: 33551104--33551201 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 50
33551094 AGCTACCACA
33551104 TAACATGTAA-CACATCCATAATGAACTCAGACCTCTCAACGAGCTCAAATG
1 TAACATG-AATCACATCCATAATGAACTCAGACCTCTCAACGAGCTCAAA-G
* * * *
33551155 TAACATGAATCGCATCCATTATTAACTCGGACCTCTCAACGAGCTCA
1 TAACATGAATCACATCCATAATGAACTCAGACCTCTCAACGAGCTCA
33551202 GATGCTCGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.23
Consensus pattern (50 bp):
TAACATGAATCACATCCATAATGAACTCAGACCTCTCAACGAGCTCAAAG
Found at i:33551212 original size:43 final size:43
Alignment explanation
Indices: 33551164--33551282 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
33551154 GTAACATGAA
* *
33551164 TCGCATCCATTATTAACTCGGACCTCTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGC
* * *
33551207 TCGCATCCATAATGAACTCGGATCTCTCAACGAGTTCGGATGC
1 TCGCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGC
* * * *
33551250 -CGCATATC-TCACGAACTCGGACCACTCAACGAG
1 TCGCAT-CCATAATGAACTCGGACCTCTCAACGAG
33551283 TTTGGATGTC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 26 0.40
43 39 0.60
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGC
Found at i:33556968 original size:80 final size:79
Alignment explanation
Indices: 33556884--33557055 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
33556874 GGACTAAGAT
*
33556884 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
33556948 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
33556964 CCGAAGCCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
33557029 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
33557043 CCGAAGGCATTTG
1 CCGAAGGCATTTG
33557056 AACGAGGAGC
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 37 0.48
80 37 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:33557035 original size:39 final size:39
Alignment explanation
Indices: 33556831--33557053 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
33556821 TTGAATGCTG
* * * * *
33556831 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
33556871 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
33556910 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
33556951 TCCGGGTTAAGTCCCGAAGCCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
33556991 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
33557030 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33557054 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:33568305 original size:47 final size:47
Alignment explanation
Indices: 33568236--33568331 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
33568226 GACTATCATA
*
33568236 AACCTCAAACATAAAACGTAAAATAAACATGAACAATATAAAAAATC
1 AACCTCAAACATAAAACGTAAAATAAACATCAACAATATAAAAAATC
*
33568283 AACCTCAAACATAAGACGTAAAATAAACATCAACAATATAAAAAATC
1 AACCTCAAACATAAAACGTAAAATAAACATCAACAATATAAAAAATC
33568330 AA
1 AA
33568332 TTATATGTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.61, C:0.18, G:0.04, T:0.17
Consensus pattern (47 bp):
AACCTCAAACATAAAACGTAAAATAAACATCAACAATATAAAAAATC
Found at i:33568469 original size:23 final size:23
Alignment explanation
Indices: 33568427--33568471 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
33568417 AAACTTATGT
* *
33568427 ATTTTGTACAAATAATCTATTTG
1 ATTTTATACAAATAACCTATTTG
*
33568450 ATTTTATACAAATAGCCTATTT
1 ATTTTATACAAATAACCTATTT
33568472 AATAGTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (23 bp):
ATTTTATACAAATAACCTATTTG
Found at i:33568602 original size:31 final size:31
Alignment explanation
Indices: 33568535--33568603 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
33568525 AATCTATACT
* * * *
33568535 AAATTTTATTTGTTAAATTTTGTACAAATAT
1 AAATTTTATCTGTTAAATATTATACAAATAA
* * *
33568566 TAATTTTATCTGTTAAATATTATATACATAA
1 AAATTTTATCTGTTAAATATTATACAAATAA
33568597 AAATTTT
1 AAATTTT
33568604 TCATATTATT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (31 bp):
AAATTTTATCTGTTAAATATTATACAAATAA
Found at i:33572778 original size:22 final size:22
Alignment explanation
Indices: 33572751--33572795 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
33572741 TGCAAGAGGA
33572751 AATAATATGCAGTTTCTTACTT
1 AATAATATGCAGTTTCTTACTT
33572773 AATAATATGCAGTTTCTTACTT
1 AATAATATGCAGTTTCTTACTT
33572795 A
1 A
33572796 CTGGGGAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (22 bp):
AATAATATGCAGTTTCTTACTT
Found at i:33575793 original size:72 final size:72
Alignment explanation
Indices: 33575676--33575820 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 72
33575666 GGCTCACATA
*
33575676 TGTATCTTGAACTCTTGATTTATTTTAGTTAATAAAGTAAAATTTATTACCTAATTGAGTAGTTT
1 TGTATCTTGAACTCTTGATTTATTTTAGTTAATAAACTAAAATTTATTACCTAATTGAGTAGTTT
33575741 ACACAAG
66 ACACAAG
33575748 TGTATCTTGAACTCTTGATTTATTTTAGTTAATAAACTAAAATTTATTACCTAATTGAGTAGTTT
1 TGTATCTTGAACTCTTGATTTATTTTAGTTAATAAACTAAAATTTATTACCTAATTGAGTAGTTT
33575813 ACACAAG
66 ACACAAG
33575820 T
1 T
33575821 TTTATTTTAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (72 bp):
TGTATCTTGAACTCTTGATTTATTTTAGTTAATAAACTAAAATTTATTACCTAATTGAGTAGTTT
ACACAAG
Found at i:33576562 original size:20 final size:17
Alignment explanation
Indices: 33576524--33576561 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
33576514 GATGTTGGGA
33576524 TATTTTATTAATATTAT
1 TATTTTATTAATATTAT
* *
33576541 TATTTTATTAAGATAAT
1 TATTTTATTAATATTAT
33576558 TATT
1 TATT
33576562 AAAGAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TATTTTATTAATATTAT
Found at i:33582563 original size:40 final size:40
Alignment explanation
Indices: 33582487--33582732 Score: 359
Period size: 40 Copynumber: 6.2 Consensus size: 40
33582477 AACCCAAGTA
* * ** *
33582487 CCTTCGGGA-TTTAGCCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
* **
33582526 CCTTCGGGACTTAGCCCGGATATAGTAACTAATACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
* *
33582566 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
*
33582606 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
* *
33582646 CCTTCGGGACTTAACGCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
*
33582686 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
33582726 CCTTCGG
1 CCTTCGG
33582733 ATCTTAGTCC
Statistics
Matches: 190, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 9 0.05
40 181 0.95
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
Found at i:33589163 original size:32 final size:33
Alignment explanation
Indices: 33589119--33589223 Score: 127
Period size: 32 Copynumber: 3.4 Consensus size: 33
33589109 AATATTAAAC
33589119 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
* *
33589152 TGGGCC-TAG-CCCATATCAGTATC--A--AT-C
1 TGGGCCATAGCCCCTTA-CAGTATCAGAGTATAT
33589179 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
33589212 TGGGCC-TAGCCC
1 TGGGCCATAGCCC
33589224 ATATCAGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
27 6 0.10
28 12 0.20
29 5 0.08
30 2 0.03
31 5 0.08
32 18 0.30
33 12 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (33 bp):
TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
Found at i:33589182 original size:60 final size:60
Alignment explanation
Indices: 33589098--33589287 Score: 278
Period size: 60 Copynumber: 3.2 Consensus size: 60
33589088 AACTGAGCCT
* * *
33589098 TAGCCCATATCAATATTAAACTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
33589158 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
* *
33589218 TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA--AGTC-GAGATATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCC-CTTACAGTA-TCAGAG-TATATTGGGCC
*
33589278 TTGCCCATAT
1 TAGCCCATAT
33589288 TAACACAGTT
Statistics
Matches: 121, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
59 4 0.03
60 112 0.93
61 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (60 bp):
TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
Found at i:33589184 original size:27 final size:28
Alignment explanation
Indices: 33589098--33589251 Score: 100
Period size: 28 Copynumber: 5.2 Consensus size: 28
33589088 AACTGAGCCT
* * *
33589098 TAGCCCATATCAATATTAAACTGGGCCA
1 TAGCCCATATCAGTATCAATCTGGGCCA
* *
33589126 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC-
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCCA
33589158 TAGCCCATATCAGTATCAATCTGGGCCA
1 TAGCCCATATCAGTATCAATCTGGGCCA
* *
33589186 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC-
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCCA
*
33589218 TAGCCCATATCAGTATCAATCTGGGCCG
1 TAGCCCATATCAGTATCAATCTGGGCCA
33589246 TAGCCC
1 TAGCCC
33589252 TATTACAAGT
Statistics
Matches: 99, Mismatches: 11, Indels: 32
0.70 0.08 0.23
Matches are distributed among these distances:
27 14 0.14
28 36 0.36
30 4 0.04
32 31 0.31
33 14 0.14
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (28 bp):
TAGCCCATATCAGTATCAATCTGGGCCA
Found at i:33589191 original size:28 final size:27
Alignment explanation
Indices: 33589152--33589251 Score: 103
Period size: 28 Copynumber: 3.4 Consensus size: 27
33589142 CAGAGTATAT
33589152 TGGGCCTAGCCCATATCAGTATCAATC
1 TGGGCCTAGCCCATATCAGTATCAATC
* *
33589179 TGGGCCATAGCCCCT-TACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATAT-CAGTATC--A--AT-C
33589212 TGGGCCTAGCCCATATCAGTATCAATC
1 TGGGCCTAGCCCATATCAGTATCAATC
33589239 TGGGCCGTAGCCC
1 TGGGCC-TAGCCC
33589252 TATTACAAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
27 13 0.22
28 22 0.37
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (27 bp):
TGGGCCTAGCCCATATCAGTATCAATC
Found at i:33593011 original size:18 final size:18
Alignment explanation
Indices: 33592988--33593024 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
33592978 CAGGTATAGT
33592988 ATCAGAAGCAAAGGAATC
1 ATCAGAAGCAAAGGAATC
33593006 ATCAGAAGCAAAGGAATC
1 ATCAGAAGCAAAGGAATC
33593024 A
1 A
33593025 GCTCGAGCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.22, T:0.11
Consensus pattern (18 bp):
ATCAGAAGCAAAGGAATC
Found at i:33594304 original size:32 final size:32
Alignment explanation
Indices: 33594260--33594364 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 32
33594250 AATATTAATC
33594260 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCCTTACAGTATCAGAGTATAT
* *
33594293 TGGGCCTAG-CCCATATCAGTATC--A--AT-C
1 TGGGCCTAGCCCCTTA-CAGTATCAGAGTATAT
*
33594320 TGGGCTATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGC-CTAGCCCCTTACAGTATCAGAGTATAT
33594353 TGGGCCTAGCCC
1 TGGGCCTAGCCC
33594365 ATATCAGTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
27 5 0.09
28 12 0.21
29 5 0.09
30 2 0.03
31 5 0.09
32 18 0.31
33 11 0.19
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (32 bp):
TGGGCCTAGCCCCTTACAGTATCAGAGTATAT
Found at i:33594310 original size:60 final size:60
Alignment explanation
Indices: 33594239--33594428 Score: 278
Period size: 60 Copynumber: 3.2 Consensus size: 60
33594229 AACTGAGCCT
* *
33594239 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
*
33594299 TAGCCCATATCAGTATCAATCTGGGCTATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
* *
33594359 TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA--AGTCA-AGATATATTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCCATAGCCC-CTTACAGTA-TCAGAG-TATATTGGGCC
*
33594419 TTGCCCATAT
1 TAGCCCATAT
33594429 TAACACAGTT
Statistics
Matches: 120, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
59 3 0.03
60 112 0.93
61 5 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (60 bp):
TAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
Found at i:33594332 original size:28 final size:27
Alignment explanation
Indices: 33594239--33594384 Score: 80
Period size: 32 Copynumber: 5.0 Consensus size: 27
33594229 AACTGAGCCT
* *
33594239 TAGCCCATATCAATATTAATCTGGGCCA
1 TAGCCCATATCAGTATCAATCTGGG-CA
* * *
33594267 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCA
33594299 TAGCCCATATCAGTATCAATCTGGGCTA
1 TAGCCCATATCAGTATCAATCTGGGC-A
* * *
33594327 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCA
33594359 TAGCCCATATCAGTATCAATCTGGGC
1 TAGCCCATATCAGTATCAATCTGGGC
33594385 CGTAGCCCTA
Statistics
Matches: 90, Mismatches: 13, Indels: 31
0.67 0.10 0.23
Matches are distributed among these distances:
27 12 0.13
28 30 0.33
30 4 0.04
32 33 0.37
33 11 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGCCCATATCAGTATCAATCTGGGCA
Found at i:33594392 original size:28 final size:27
Alignment explanation
Indices: 33594239--33594392 Score: 96
Period size: 28 Copynumber: 5.2 Consensus size: 27
33594229 AACTGAGCCT
* *
33594239 TAGCCCATATCAATATTAATCTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCC
* *
33594266 ATAGCCCCT-TACAGTATCAGAGTATATTGGGCC
1 -TAGCCCATAT-CAGTATC--A--AT-CTGGGCC
*
33594299 TAGCCCATATCAGTATCAATCTGGGCTA
1 TAGCCCATATCAGTATCAATCTGGGC-C
* *
33594327 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCC
33594359 TAGCCCATATCAGTATCAATCTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCC
33594386 GTAGCCC
1 -TAGCCC
33594393 TATTACAAGT
Statistics
Matches: 98, Mismatches: 12, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
27 13 0.13
28 36 0.37
30 4 0.04
32 32 0.33
33 13 0.13
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGCCCATATCAGTATCAATCTGGGCC
Found at i:33599448 original size:32 final size:33
Alignment explanation
Indices: 33599404--33599508 Score: 118
Period size: 32 Copynumber: 3.4 Consensus size: 33
33599394 AATATTAATC
33599404 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
* * *
33599437 TGGGCC-TAG-CCCATATCAGTTTC--A--AT-C
1 TGGGCCATAGCCCCTTA-CAGTATCAGAGTATAT
33599464 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
33599497 TGGGCC-TAGCCC
1 TGGGCCATAGCCC
33599509 ATATCAGTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
27 6 0.10
28 11 0.19
29 5 0.09
30 2 0.03
31 5 0.09
32 17 0.29
33 12 0.21
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (33 bp):
TGGGCCATAGCCCCTTACAGTATCAGAGTATAT
Found at i:33599454 original size:60 final size:60
Alignment explanation
Indices: 33599383--33599572 Score: 271
Period size: 60 Copynumber: 3.2 Consensus size: 60
33599373 AACTGAGCCT
*
33599383 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
33599443 TAGCCCATATCAGT-TTCAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAGTATT-AATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
* * *
33599503 TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA--AGTC-GAGATATATTGGGCC
1 TAGCCCATATCAGTATTAATCTGGGCCATAGCCC-CTTACAGTA-TCAGAG-TATATTGGGCC
*
33599563 TTGCCCATAT
1 TAGCCCATAT
33599573 TAACACAGTT
Statistics
Matches: 120, Mismatches: 5, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
59 6 0.05
60 108 0.90
61 6 0.05
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (60 bp):
TAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
Found at i:33599469 original size:27 final size:28
Alignment explanation
Indices: 33599383--33599536 Score: 100
Period size: 28 Copynumber: 5.2 Consensus size: 28
33599373 AACTGAGCCT
* *
33599383 TAGCCCATATCAATATTAATCTGGGCCA
1 TAGCCCATATCAGTATCAATCTGGGCCA
* *
33599411 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC-
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCCA
*
33599443 TAGCCCATATCAGTTTCAATCTGGGCCA
1 TAGCCCATATCAGTATCAATCTGGGCCA
* *
33599471 TAGCCCCT-TACAGTATCAGAGTATATTGGGCC-
1 TAGCCCATAT-CAGTATC--A--AT-CTGGGCCA
*
33599503 TAGCCCATATCAGTATCAATCTGGGCCG
1 TAGCCCATATCAGTATCAATCTGGGCCA
33599531 TAGCCC
1 TAGCCC
33599537 TATTACAAGT
Statistics
Matches: 98, Mismatches: 12, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
27 14 0.14
28 35 0.36
30 4 0.04
32 31 0.32
33 14 0.14
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (28 bp):
TAGCCCATATCAGTATCAATCTGGGCCA
Found at i:33602041 original size:6 final size:6
Alignment explanation
Indices: 33602030--33602065 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
33602020 AAGTAAAAGC
33602030 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
33602066 TTAATAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:33634654 original size:28 final size:29
Alignment explanation
Indices: 33634614--33634668 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
33634604 TGGGTTTTCA
33634614 GACACGGCCGTGT-CTAGGCCGTGTGAGG
1 GACACGGCCGTGTGCTAGGCCGTGTGAGG
** *
33634642 GACACGGTTGTGTGCTTGGCCGTGTGA
1 GACACGGCCGTGTGCTAGGCCGTGTGA
33634669 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.13, C:0.22, G:0.42, T:0.24
Consensus pattern (29 bp):
GACACGGCCGTGTGCTAGGCCGTGTGAGG
Found at i:33635641 original size:11 final size:12
Alignment explanation
Indices: 33635611--33635644 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
33635601 GTATGTTTAC
33635611 TTATTATATAAG
1 TTATTATATAAG
33635623 TATATTAT-TAAG
1 T-TATTATATAAG
33635635 TTATTATATA
1 TTATTATATA
33635645 TATATAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:33635695 original size:15 final size:16
Alignment explanation
Indices: 33635669--33635698 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33635659 AATAAAAGAA
33635669 AGAAAGGAAACAAAAG
1 AGAAAGGAAACAAAAG
33635685 AGAAA-GAAACAAAA
1 AGAAAGGAAACAAAA
33635699 TAGCAAACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (16 bp):
AGAAAGGAAACAAAAG
Found at i:33636182 original size:18 final size:19
Alignment explanation
Indices: 33636139--33636187 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
33636129 ATGGAAAGTG
*
33636139 AATTG-AATTATATTGATT
1 AATTGAAATTATAGTGATT
*
33636157 TATT-AAATTAT-GTGATT
1 AATTGAAATTATAGTGATT
33636174 AATTGAAATATATA
1 AATTGAAAT-TATA
33636188 CATATTGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
17 8 0.33
18 13 0.54
19 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (19 bp):
AATTGAAATTATAGTGATT
Found at i:33636627 original size:18 final size:18
Alignment explanation
Indices: 33636606--33636689 Score: 71
Period size: 18 Copynumber: 4.7 Consensus size: 18
33636596 CTGAATTATC
33636606 GACTGTTACTGAATAACT
1 GACTGTTACTGAATAACT
** *
33636624 GACTACTACTGAATAATT
1 GACTGTTACTGAATAACT
* *
33636642 GACTGATATTGAATAAAC-
1 GACTGTTACTGAAT-AACT
* *
33636660 GACCGTTATTGAATAACT
1 GACTGTTACTGAATAACT
* *
33636678 GATTATTACTGA
1 GACTGTTACTGA
33636690 TGACTAACTA
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
17 3 0.06
18 46 0.90
19 2 0.04
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (18 bp):
GACTGTTACTGAATAACT
Found at i:33636642 original size:54 final size:53
Alignment explanation
Indices: 33636577--33636689 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
33636567 TAAATAAAGG
* * * *
33636577 TACTGAAAATTGACCGCTACTGAATTATCGACTGTTACTGAATAACTGACTAC
1 TACTGAAAATTGACCGATACTGAATAAACGACCGTTACTGAATAACTGACTAC
* * * * *
33636630 TACTGAATAATTGACTGATATTGAATAAACGACCGTTATTGAATAACTGATTAT
1 TACTGAA-AATTGACCGATACTGAATAAACGACCGTTACTGAATAACTGACTAC
33636684 TACTGA
1 TACTGA
33636690 TGACTAACTA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
53 7 0.14
54 43 0.86
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (53 bp):
TACTGAAAATTGACCGATACTGAATAAACGACCGTTACTGAATAACTGACTAC
Found at i:33641630 original size:45 final size:45
Alignment explanation
Indices: 33641545--33641630 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
33641535 ATAAGTGTCG
** * *
33641545 CCTTACTGTTACTGTTCCGGATTTGTTCTGAAGAGTTACTCCGTA
1 CCTTACTGTTACTGTTCCAAATTTGTTCCGAAGAGGTACTCCGTA
*
33641590 CCTTACTGTTACTGTTCCAAATTTGTTCCGATGAGGTACTC
1 CCTTACTGTTACTGTTCCAAATTTGTTCCGAAGAGGTACTC
33641631 TGTGTACCGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40
Consensus pattern (45 bp):
CCTTACTGTTACTGTTCCAAATTTGTTCCGAAGAGGTACTCCGTA
Found at i:33641652 original size:47 final size:45
Alignment explanation
Indices: 33641548--33641652 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
33641538 AGTGTCGCCT
** * * *
33641548 TACTGTTACTGTTCCGGATTTGTTCTGAAGAGTTACTCCGTACCT
1 TACTGTTACTGTTCCAAATTTGTTCCGAAGAGGTACTCCGTACCG
* *
33641593 TACTGTTACTGTTCCAAATTTGTTCCGATGAGGTACTCTGTGTACCG
1 TACTGTTACTGTTCCAAATTTGTTCCGAAGAGGTACTC--CGTACCG
*
33641640 TACTGCTACTGTT
1 TACTGTTACTGTT
33641653 ACTGTTACTG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
45 33 0.66
47 17 0.34
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (45 bp):
TACTGTTACTGTTCCAAATTTGTTCCGAAGAGGTACTCCGTACCG
Found at i:33641818 original size:18 final size:18
Alignment explanation
Indices: 33641780--33641860 Score: 92
Period size: 18 Copynumber: 4.6 Consensus size: 18
33641770 TAAATAAAGG
* *
33641780 TACTGAA-AATTGACCGC
1 TACTGAATAATTGACTGA
* *
33641797 TACTGAATAGTTGACTGT
1 TACTGAATAATTGACTGA
* *
33641815 TACTGAATAACTGACTGC
1 TACTGAATAATTGACTGA
33641833 TACTGAATAATTGACTGA
1 TACTGAATAATTGACTGA
*
33641851 TATTGAATAA
1 TACTGAATAA
33641861 ACGACCGTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
17 7 0.13
18 47 0.87
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (18 bp):
TACTGAATAATTGACTGA
Found at i:33641837 original size:36 final size:36
Alignment explanation
Indices: 33641780--33641878 Score: 112
Period size: 36 Copynumber: 2.8 Consensus size: 36
33641770 TAAATAAAGG
* * *
33641780 TACTGAA-AATTGACCGCTACTGAATAGTTGACTGT
1 TACTGAATAACTGACCGCTACTGAATAATTGACTGA
*
33641815 TACTGAATAACTGACTGCTACTGAATAATTGACTGA
1 TACTGAATAACTGACCGCTACTGAATAATTGACTGA
* * *
33641851 TATTGAATAAAC-GACCGTTATTGAATAA
1 TACTGAAT-AACTGACCGCTACTGAATAA
33641879 CTGATTATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
35 7 0.13
36 44 0.81
37 3 0.06
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (36 bp):
TACTGAATAACTGACCGCTACTGAATAATTGACTGA
Found at i:33641858 original size:54 final size:53
Alignment explanation
Indices: 33641780--33641882 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
33641770 TAAATAAAGG
* *** *
33641780 TACTGAAAATTGACCGCTACTGAATAGTTGACTGTTACTGAATAACTGACTGC
1 TACTGAAAATTGACCGATACTGAATAAACGACCGTTACTGAATAACTGACTGC
* * *
33641833 TACTGAATAATTGACTGATATTGAATAAACGACCGTTATTGAATAACTGA
1 TACTGAA-AATTGACCGATACTGAATAAACGACCGTTACTGAATAACTGA
33641883 TTATTACTGA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 7 0.17
54 34 0.83
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (53 bp):
TACTGAAAATTGACCGATACTGAATAAACGACCGTTACTGAATAACTGACTGC
Found at i:33650508 original size:23 final size:22
Alignment explanation
Indices: 33650477--33650520 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
33650467 TTGATAATAT
*
33650477 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
33650500 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
33650521 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:33655319 original size:40 final size:40
Alignment explanation
Indices: 33655226--33655483 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
33655216 AAGCCAAGTA
* * *
33655226 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
33655264 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33655304 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
33655344 CCTTCGGGACTTAGCCCAGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
33655384 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33655424 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
33655465 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33655484 TTATCATCCA
Statistics
Matches: 199, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 142 0.71
41 24 0.12
42 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33660316 original size:22 final size:22
Alignment explanation
Indices: 33660286--33660344 Score: 93
Period size: 22 Copynumber: 2.6 Consensus size: 22
33660276 GAAATATTTG
33660286 ATGACTTAGAAAGATCTAAATCT
1 ATGA-TTAGAAAGATCTAAATCT
33660309 ATGATTAGAAAGATCTAAATCT
1 ATGATTAGAAAGATCTAAATCT
33660331 ATGA-TAGAGAAGAT
1 ATGATTAGA-AAGAT
33660345 GGTTAGAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.11
22 27 0.77
23 4 0.11
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (22 bp):
ATGATTAGAAAGATCTAAATCT
Found at i:33663245 original size:42 final size:43
Alignment explanation
Indices: 33663189--33663306 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
33663179 CTATTTTACG
33663189 TGTAAGACCATGTCTGGGACA-TCGGCA-TCATATTTGATT-TCA
1 TGTAAGACCATGTCTGGGACAGT-GGCATTCATATTTGATTAT-A
* * *
33663231 TGTAAGACCCTGTCTGGGACAGTGGCATTGATGTTTGATTATA
1 TGTAAGACCATGTCTGGGACAGTGGCATTCATATTTGATTATA
**
33663274 TGTAAGACCACATCTGGGAC-GTTGGCATT-ATAT
1 TGTAAGACCATGTCTGGGACAG-TGGCATTCATAT
33663307 ATGTTCTCTG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 28 0.43
43 36 0.55
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATTCATATTTGATTATA
Found at i:33665574 original size:17 final size:17
Alignment explanation
Indices: 33665552--33665584 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
33665542 ATGGTTTACC
33665552 CCTGTAGGGCCCACATA
1 CCTGTAGGGCCCACATA
33665569 CCTGTAGGGCCCACAT
1 CCTGTAGGGCCCACAT
33665585 GGCCCAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (17 bp):
CCTGTAGGGCCCACATA
Found at i:33671682 original size:68 final size:68
Alignment explanation
Indices: 33671559--33671717 Score: 182
Period size: 68 Copynumber: 2.3 Consensus size: 68
33671549 TGTCGTAGCT
* *
33671559 GAGCTATTGTCTTACACCTTGTAGCGCCATGTTTAAAGTCACGACAGACATTATTGGT-TGCTAT
1 GAGCTATAGTCTTACACCTTGTAGCCCCATGTTTAAAGTCACGACAGACATTATTGGTCT-CTAT
33671623 AATC
65 AATC
* * *
33671627 GAGCTATAGTCTTACACCTTGTAGCCCCGTGTTTAATA-TC-CTAGTAGAC-TCTATTGGTCTCT
1 GAGCTATAGTCTTACACCTTGTAGCCCCATGTTTAA-AGTCACGA-CAGACAT-TATTGGTCTCT
*
33671689 ATAGTC
63 ATAATC
* *
33671695 GAGCTATGGTCTTACATCTTGTA
1 GAGCTATAGTCTTACACCTTGTA
33671718 CTGTCTCCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
67 3 0.04
68 74 0.94
69 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (68 bp):
GAGCTATAGTCTTACACCTTGTAGCCCCATGTTTAAAGTCACGACAGACATTATTGGTCTCTATA
ATC
Found at i:33676927 original size:43 final size:42
Alignment explanation
Indices: 33676816--33676932 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
33676806 TAGGGTTATT
**
33676816 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATGT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * * * * *
33676858 GAGACTT-CGTGTAAAATCGTAGCTGGGCTATTGTCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
*
33676901 GAGATTACATGTAAGACCATATCTGGGATATG
1 GAGATTACGTGTAAGACCATATCTGGGATATG
33676933 CATTGGTACG
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:33686372 original size:47 final size:47
Alignment explanation
Indices: 33686232--33686408 Score: 182
Period size: 47 Copynumber: 3.8 Consensus size: 47
33686222 GATTTCTTGT
* * * *
33686232 GTGCCAGTGTAAGACATGCCTGGGACATGCATCGGCCAC-ATTACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGA
** * * *
33686278 GTGTTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATAGA-AATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATAATGA
* *
33686326 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGATAATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGA
*
33686373 -TAGCCAGTGTAAGACGTG-CGTGGGACATGCATCGGC
1 GT-GCCAGTGTAAGACATGTC-TGGGACATGCATCGGC
33686409 TAAGAGTCGT
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
46 23 0.21
47 61 0.56
48 23 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (47 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGA
Found at i:33687464 original size:55 final size:55
Alignment explanation
Indices: 33687346--33687464 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
33687336 AGGCCACGCG
* *
33687346 GGCGTGTGTCATGGCCGTGTTTTAAAGTCAGTGTTGTACACGGGCAAGTCCCACA
1 GGCGTGTGTAATGGCCGTGTTTTAAAGTCAGTGTTGCACACGGGCAAGTCCCACA
* * * * * **
33687401 GACATGTGTAATGGTCTTGTTTTGAAGTCAGTGTTGCACACGGGCTAAG-GGCACA
1 GGCGTGTGTAATGGCCGTGTTTTAAAGTCAGTGTTGCACACGGGC-AAGTCCCACA
33687456 GGCGTGTGT
1 GGCGTGTGT
33687465 GACCACACGG
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
55 49 0.94
56 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (55 bp):
GGCGTGTGTAATGGCCGTGTTTTAAAGTCAGTGTTGCACACGGGCAAGTCCCACA
Found at i:33689598 original size:47 final size:45
Alignment explanation
Indices: 33689525--33689794 Score: 217
Period size: 47 Copynumber: 5.8 Consensus size: 45
33689515 ATTTCTTGTG
* * *
33689525 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGAT-GA
*
33689571 TGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGA-GATGA
1 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAGATGATGA
* * *
33689618 GTGCCAGTGTAAGACATGTTTGGGACATGCACCAGGCTTGATGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTAGATGATGA
**
33689665 TAGCCAGTGTAAGATGTGTCTGGGACATGCATCGGCTA-A-GAGTCG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGA-T-GA
* * * * *
33689710 TACTAGTGTAAGACATGTCTCGGACATGCATCAGCATATAT-ATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-TAGATGAT--GA
* * *
33689757 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
33689795 AACTTATCCC
Statistics
Matches: 183, Mismatches: 24, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
44 30 0.16
45 6 0.03
46 29 0.16
47 64 0.35
48 32 0.17
49 15 0.08
50 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGATGA
Found at i:33689685 original size:94 final size:91
Alignment explanation
Indices: 33689524--33689739 Score: 240
Period size: 94 Copynumber: 2.3 Consensus size: 91
33689514 GATTTCTTGT
* *
33689524 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGATGCCAGTGTAAGACCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCACATGATGGATGCCAGTGTAAGACCATG
*
33689589 TCTGGGACATGGCATTGGCGT-AGAGATGA
66 TCTGGGACAT-GCATCGGC-TAAGAG-T-A
* *** **
33689618 GTGCCAGTGTAAGACATGTTTGGGACATGCACCAGGCTTGATGAT-GATAGCCAGTGTAAGA-TG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCACC-GGCCACATGATGGAT-GCCAGTGTAAGACCA
*
33689681 TGTCTGGGACATGCATCGGCTAAGAGTC
64 TGTCTGGGACATGCATCGGCTAAGAGTA
* * *
33689709 GTACTAGTGTAAGACATGTCTCGGACATGCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCA
33689740 TCAGCATATA
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
91 27 0.26
92 2 0.02
93 11 0.10
94 46 0.44
95 19 0.18
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCACATGATGGATGCCAGTGTAAGACCATG
TCTGGGACATGCATCGGCTAAGAGTA
Found at i:33712939 original size:70 final size:70
Alignment explanation
Indices: 33712821--33712960 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
33712811 CCGGTGCTCC
*
33712821 CCAAGGAGACACACTAGGCCTAATGTAGCCTCTATCTAACAACTCTTGAATTTGAGCCTTCAGTT
1 CCAAGGAGACACACTAGGCCTAATGTAGCCTCTATCTAACAACCCTTGAATTTGAGCCTTCAGTT
33712886 CCACT
66 CCACT
33712891 CCAAGGAGACACACTAGGCCTAATGTAGCCTCTATCTAACAACCCTTGAATTTGAGCCTTCAGTT
1 CCAAGGAGACACACTAGGCCTAATGTAGCCTCTATCTAACAACCCTTGAATTTGAGCCTTCAGTT
33712956 CCACT
66 CCACT
33712961 AACTCCTTCG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (70 bp):
CCAAGGAGACACACTAGGCCTAATGTAGCCTCTATCTAACAACCCTTGAATTTGAGCCTTCAGTT
CCACT
Found at i:33737107 original size:17 final size:17
Alignment explanation
Indices: 33737068--33737109 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
33737058 TACCCAAGTA
33737068 GGGCCCACATACCCATG
1 GGGCCCACATACCCATG
* *
33737085 GAGCCCACATGA-CCGTG
1 GGGCCCACAT-ACCCATG
33737102 GGGCCCAC
1 GGGCCCAC
33737110 TCGACCCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.21, C:0.40, G:0.29, T:0.10
Consensus pattern (17 bp):
GGGCCCACATACCCATG
Found at i:33748210 original size:28 final size:28
Alignment explanation
Indices: 33748172--33748278 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
33748162 GAATCATTCG
* *
33748172 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
33748200 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
33748228 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
33748256 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
33748279 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:33751978 original size:46 final size:48
Alignment explanation
Indices: 33751873--33751986 Score: 135
Period size: 46 Copynumber: 2.4 Consensus size: 48
33751863 TGTCTTCGAC
* * * *
33751873 ATGGACTTACATGAATTATTCCTATCTCCAATGGCATATATATATAAT
1 ATGGACTTACATGGATCATTCCTATCTCCAATAGCACATATATATAAT
* * *
33751921 ATAGG-CTTACATGGATCATTCCTGTCTCCAA-AGC-CATATATCTGAT
1 AT-GGACTTACATGGATCATTCCTATCTCCAATAGCACATATATATAAT
33751967 ATGGACTTACATGGATCATT
1 ATGGACTTACATGGATCATT
33751987 TTTGTCCCGT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
45 2 0.04
46 26 0.46
47 2 0.04
48 25 0.44
49 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGATCATTCCTATCTCCAATAGCACATATATATAAT
Found at i:33755711 original size:22 final size:22
Alignment explanation
Indices: 33755686--33755761 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
33755676 AAGTGTATGT
33755686 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
33755708 ATGTGATGAATGTGAAAGTGTATG
1 ATGTGAT-AAGGCCTAA-TGGCCG
33755732 TATGTGATAAGGCCTAATGGCCG
1 -ATGTGATAAGGCCTAATGGCCG
33755755 ATGTGAT
1 ATGTGAT
33755762 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:33755741 original size:47 final size:47
Alignment explanation
Indices: 33755672--33755932 Score: 414
Period size: 47 Copynumber: 5.5 Consensus size: 47
33755662 GTGTGTATAC
*
33755672 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
33755719 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33755766 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33755815 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
33755862 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
33755909 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
33755933 TCCTGAAGGG
Statistics
Matches: 201, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 155 0.77
49 46 0.23
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:33755792 original size:96 final size:94
Alignment explanation
Indices: 33755672--33755932 Score: 414
Period size: 96 Copynumber: 2.8 Consensus size: 94
33755662 GTGTGTATAC
* *
33755672 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
33755737 GATAAGGCCTAATGGCCGATGTGATGAAT
66 GATAAGGCCTAATGGCCGATGTGATGAAT
33755766 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
33755831 GTGATAAGGCCTAATGGCCGATGTGATGAAT
64 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
33755862 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
33755927 GATAAG
66 GATAAG
33755933 TCCTGAAGGG
Statistics
Matches: 155, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
94 63 0.41
96 92 0.59
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:33763847 original size:40 final size:40
Alignment explanation
Indices: 33763791--33763994 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
33763781 CATTTGAATG
* *
33763791 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
33763831 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
33763871 TTATCCAGGCTAAGACCCGGAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
33763911 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * *
33763951 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
33763991 ATAT
1 ATAT
33763995 TCAGAAGAAA
Statistics
Matches: 145, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 140 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:33766662 original size:51 final size:50
Alignment explanation
Indices: 33766607--33766755 Score: 143
Period size: 51 Copynumber: 3.1 Consensus size: 50
33766597 CTACCACATA
* *
33766607 ACATGTAACACATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGTT
1 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG-T
* * * * *
33766658 ACATG-AATCACATACATCATGAACTTGGACCACTCAATGAGCTCGGATG-
1 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGT
*
33766707 -C---T--CGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
1 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG-T
33766752 ACAT
1 ACAT
33766756 ACCTCACGAA
Statistics
Matches: 78, Mismatches: 13, Indels: 17
0.72 0.12 0.16
Matches are distributed among these distances:
43 35 0.45
46 1 0.01
48 1 0.01
50 2 0.03
51 39 0.50
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (50 bp):
ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGT
Found at i:33773821 original size:47 final size:47
Alignment explanation
Indices: 33773763--33774196 Score: 661
Period size: 47 Copynumber: 9.2 Consensus size: 47
33773753 AAGGTGTGTC
* * *
33773763 TATGTGATAAGGCCTAATGGCCGATGTGATGAATCTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
33773810 TATGTGGTAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTGTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
33773857 TATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
33773904 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
33773951 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
33773998 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
33774045 TATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * * * * *
33774092 TATGAGATAAGACCTAATGGCCGATGTGGTGGATGTGAAGGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
33774139 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGCGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
33774186 AATGTGATAAG
1 TATGTGATAAG
33774197 TCCCGAAGGG
Statistics
Matches: 349, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 349 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:33776638 original size:23 final size:23
Alignment explanation
Indices: 33776612--33776661 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
33776602 ACATATATCA
* *
33776612 ACATC-CTCCACTAGTGATATGCC
1 ACATCTCTCAACTA-TGATATGAC
33776635 ACATCTCTCAACTATGATATGAC
1 ACATCTCTCAACTATGATATGAC
33776658 ACAT
1 ACAT
33776662 TTCAAGCACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.32, C:0.30, G:0.10, T:0.28
Consensus pattern (23 bp):
ACATCTCTCAACTATGATATGAC
Found at i:33777492 original size:20 final size:20
Alignment explanation
Indices: 33777467--33777518 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
33777457 GAGGCAATGC
33777467 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
*
33777487 ACACGCCCGAGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
33777507 ACACGCCCGTGT
1 ACACGCCCGTGT
33777519 CCCTTACCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:33779055 original size:43 final size:43
Alignment explanation
Indices: 33778994--33779078 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
33778984 TACATGAATT
* *
33778994 GCATCCATCATGAACTCGGACCACTCAATGAGCTCAGATGCTC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCTC
* * *
33779037 GCATCTATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCT
33779079 ACATAACTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (43 bp):
GCATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCTC
Found at i:33809427 original size:47 final size:47
Alignment explanation
Indices: 33809373--33809566 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
33809363 TTAGGATTTT
** * *
33809373 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33809420 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
33809467 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
33809514 ATGTGATGAATATGAATATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33809561 ATGTGA
1 ATGTGA
33809567 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:33809473 original size:22 final size:22
Alignment explanation
Indices: 33809402--33809520 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
33809392 GTATATATGA
33809402 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
33809424 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
33809449 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
33809471 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
33809496 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
33809518 GAT
1 GAT
33809521 GAATATGAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:33809627 original size:50 final size:49
Alignment explanation
Indices: 33809443--33809669 Score: 215
Period size: 47 Copynumber: 4.7 Consensus size: 49
33809433 GAACATGCAT
* * * * * *
33809443 ATATGTGATAAGGCCGAATGGCCAATGTG-AT-GA-ATGTGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGC
* * *
33809488 ATATGTGTGATAAGGCCGAATGGCCAATGTG-AT-GA-ATATGA-ATATGC
1 ATATGTG-G-TAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGC
*
33809535 ATATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGAGATATGC
1 --ATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGC
*
33809585 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AATATATATATGAGATATGC
*
33809635 ATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATAT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAATATAT
33809670 GTAGGCGATG
Statistics
Matches: 159, Mismatches: 10, Indels: 23
0.83 0.05 0.12
Matches are distributed among these distances:
45 7 0.04
47 54 0.34
48 34 0.21
49 16 0.10
50 47 0.30
51 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGC
Found at i:33809650 original size:98 final size:95
Alignment explanation
Indices: 33809402--33809672 Score: 311
Period size: 94 Copynumber: 2.8 Consensus size: 95
33809392 GTATATATGA
* * * * * *
33809402 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAAGCCGAATGGCCAATGTGATGAATATGAATATG-ATATATGTGGTAAAGCCGAATGGCTA
*
33809467 ATGTGATGA-ATG--TGAGCATGCATATGTGT
65 ATGTGA-AATATGTATGAGCATGCATATGTGT
*
33809496 GATAAGGCCGAATGGCCAATGTGATGAATATGAATATGCATATATGTGGTAAAGCCGAATGGCTA
1 GATAAAGCCGAATGGCCAATGTGATGAATATGAATATG-ATATATGTGGTAAAGCCGAATGGCTA
*
33809561 ATGTGAAATATGTATGAGATATGCATATGTG-
65 ATGTGAAATATGTATGAG-CATGCATATGTGT
* *
33809592 G-TAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG-TATATGTGGTAAAGCCGAATG
1 GATAAAGCCGAATGGCCAATGTG--AT-GA-ATATGA-ATATGATATATGTGGTAAAGCCGAATG
*
33809655 GCTAGTGTGAAATATGTA
61 GCTAATGTGAAATATGTA
33809673 GGCGATGTGC
Statistics
Matches: 157, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
93 1 0.01
94 69 0.44
95 19 0.12
96 5 0.03
97 13 0.08
98 39 0.25
99 6 0.04
100 5 0.03
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (95 bp):
GATAAAGCCGAATGGCCAATGTGATGAATATGAATATGATATATGTGGTAAAGCCGAATGGCTAA
TGTGAAATATGTATGAGCATGCATATGTGT
Found at i:33809687 original size:50 final size:50
Alignment explanation
Indices: 33809524--33809693 Score: 208
Period size: 50 Copynumber: 3.4 Consensus size: 50
33809514 ATGTGATGAA
*
33809524 TATGA-ATATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
33809573 TATGAGATATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATA
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG
*
33809623 TATGAGATAT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* * *
33809671 TAGGCGATGTGCGTATATTGTGG
1 TATGAGATATGCGTATA-TGTGG
33809694 CCGAACGACC
Statistics
Matches: 105, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.36
49 9 0.09
50 51 0.49
51 6 0.06
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
TATGAGATATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:33809927 original size:37 final size:37
Alignment explanation
Indices: 33809819--33809927 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
33809809 GGAAATATAA
*
33809819 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
33809856 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
33809893 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
33809928 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:33810852 original size:20 final size:20
Alignment explanation
Indices: 33810829--33810866 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
33810819 AAGCAAAGCA
33810829 AAATTCATATGAATTATGTT
1 AAATTCATATGAATTATGTT
33810849 AAATTCATATGAATTATG
1 AAATTCATATGAATTATG
33810867 CTCAAGTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
AAATTCATATGAATTATGTT
Found at i:33813215 original size:29 final size:27
Alignment explanation
Indices: 33813159--33813217 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
33813149 ATTTGAGTAA
*
33813159 TTAGGGCTAAATTGTAAAAATTATAAAT
1 TTAGGGCTAAAATGTAAAAA-TATAAAT
33813187 TTAGGGACTAAAATGTGAAAAA-ATGAAAT
1 TTAGGG-CTAAAATGT-AAAAATAT-AAAT
33813216 TT
1 TT
33813218 GTAATGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 8 0.30
29 14 0.52
30 5 0.19
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.32
Consensus pattern (27 bp):
TTAGGGCTAAAATGTAAAAATATAAAT
Found at i:33823069 original size:19 final size:20
Alignment explanation
Indices: 33823045--33823082 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33823035 GGTACCACCA
33823045 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
33823064 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
33823083 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:33823890 original size:30 final size:30
Alignment explanation
Indices: 33823856--33823915 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
33823846 ATTTAATACG
*
33823856 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTACCCCTA
*** *
33823886 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTAAAAAAATTACACTTTTACCCCTA
33823916 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTACCCCTA
Found at i:33830357 original size:19 final size:20
Alignment explanation
Indices: 33830333--33830370 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33830323 GGTACCACCA
33830333 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
33830352 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
33830371 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:33830710 original size:93 final size:93
Alignment explanation
Indices: 33830600--33830770 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
33830590 GCCCCTAAGT
33830600 GAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCAGTTC-CATCCATAAATGAACTCGGACTCAACTCA
*
33830664 ACAAGTTTGGATGCCTAGTTACATCTCAC
65 ACAAGTTCGGATGCCTAGTTACATCTCAC
* * *
33830693 GAACTCGGACTCAACTCAACGAGTTCGGGCATTTCCATCCATAACTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCAGTTCCATCCATAAATGAACTCGGACTCAACTCAA
*
33830758 CGAGTTCGGATGC
66 CAAGTTCGGATGC
33830771 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 69 0.96
94 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCAGTTCCATCCATAAATGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33830758 original size:46 final size:46
Alignment explanation
Indices: 33830599--33830766 Score: 200
Period size: 46 Copynumber: 3.6 Consensus size: 46
33830589 CGCCCCTAAG
* *
33830599 TGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCAGTTC-CATCCATAAC
* * * *
33830645 TGAACTCGGACTCAACTCAACAAGTTTGGATGCCTAGTTACAT-C-TCAC
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-AGTTCCATCCATAAC
*
33830693 -GAACTCGGACTCAACTCAACGAGTTCGGGCATTTCCATCCATAAC
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCAGTTCCATCCATAAC
33830738 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
33830767 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 54 0.52
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCAGTTCCATCCATAAC
Found at i:33840562 original size:15 final size:15
Alignment explanation
Indices: 33840542--33840571 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33840532 ATTATGAAAT
33840542 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
33840557 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
33840572 GAATTTTTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:33852243 original size:40 final size:40
Alignment explanation
Indices: 33852095--33852306 Score: 214
Period size: 40 Copynumber: 5.3 Consensus size: 40
33852085 CATTTGAATG
* * * * *
33852095 ATATCCGGGCTAAGTCTCGAAGGCATCTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
33852135 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
33852175 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
33852215 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * * ** *
33852255 ATACCCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
33852295 ATATCC-GGCTAA
1 ATATCCGGGCTAA
33852307 ATTCCGAAGA
Statistics
Matches: 151, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.05
40 141 0.93
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:33869482 original size:37 final size:37
Alignment explanation
Indices: 33869419--33869527 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
33869409 AGCTCAGACG
* *
33869419 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
33869456 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
33869493 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
33869528 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:33869786 original size:47 final size:47
Alignment explanation
Indices: 33869734--33869927 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
33869724 CATACATATT
* * * *
33869734 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
33869781 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
33869828 TCGCATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
33869875 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33869922 TCACAT
1 TCACAT
33869928 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:33879508 original size:20 final size:21
Alignment explanation
Indices: 33879483--33879521 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
33879473 ACCCATTAGC
33879483 TTGTACAAAAATTG-TAATGG
1 TTGTACAAAAATTGCTAATGG
*
33879503 TTGTACCAAAATTGCTAAT
1 TTGTACAAAAATTGCTAAT
33879522 CGATATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (21 bp):
TTGTACAAAAATTGCTAATGG
Found at i:33879702 original size:19 final size:19
Alignment explanation
Indices: 33879680--33879748 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
33879670 ATGAGTTAAA
**
33879680 AAATTTGGTATCGTGTTAG
1 AAATTTGGTATCGCATTAG
33879699 AAATATTGGTATC-CATTAG
1 AAAT-TTGGTATCGCATTAG
** *
33879718 AAATTTAATATCACATTAG
1 AAATTTGGTATCGCATTAG
33879737 AAATTTTGGTAT
1 AAA-TTTGGTAT
33879749 TGGTTAGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
18 6 0.15
19 21 0.51
20 14 0.34
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (19 bp):
AAATTTGGTATCGCATTAG
Found at i:33880159 original size:14 final size:13
Alignment explanation
Indices: 33880140--33880173 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
33880130 AATATAAAAA
*
33880140 ATAAAATTTATAT
1 ATAAAAATTATAT
33880153 ATGAAAAATTATAT
1 AT-AAAAATTATAT
33880167 ATAAAAA
1 ATAAAAA
33880174 CGTAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (13 bp):
ATAAAAATTATAT
Found at i:33880228 original size:17 final size:17
Alignment explanation
Indices: 33880208--33880249 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
33880198 AAATTTGTAA
33880208 AAAAATTAAAAAATTAT
1 AAAAATTAAAAAATTAT
* * *
33880225 AAAAATTTATAAATTGT
1 AAAAATTAAAAAATTAT
33880242 AAAAATTA
1 AAAAATTA
33880250 TAGTAGATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAAATTAAAAAATTAT
Found at i:33883810 original size:65 final size:65
Alignment explanation
Indices: 33883729--33883859 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
33883719 TAAAGATATG
33883729 TTAAAGATAGAGATAATGAGCATGAAGAAGGCAAAAAATTATGATGGACGGTGATTTTTGAGAAT
1 TTAAAGATAGAGATAATGAGCATGAAGAAGGCAAAAAATTATGATGGACGGTGATTTTTGAGAAT
33883794 TTAAAGATAGAGATAATGAGCATGAAGAAGGCAAAAAATTATGATGGACGGTGATTTTTGAGAAT
1 TTAAAGATAGAGATAATGAGCATGAAGAAGGCAAAAAATTATGATGGACGGTGATTTTTGAGAAT
33883859 T
1 T
33883860 GAAACAACTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.43, C:0.05, G:0.26, T:0.27
Consensus pattern (65 bp):
TTAAAGATAGAGATAATGAGCATGAAGAAGGCAAAAAATTATGATGGACGGTGATTTTTGAGAAT
Found at i:33891614 original size:20 final size:20
Alignment explanation
Indices: 33891568--33891619 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
33891558 CGGGCTGAGG
*
33891568 ACACGGGCGTGTCCCAAGTC
1 ACACGGGCGTGTCCCAAGCC
*
33891588 ACGCGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
* *
33891608 ATACGGGTGTGT
1 ACACGGGCGTGT
33891620 GTAGCCACAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.31, G:0.35, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:33898141 original size:13 final size:13
Alignment explanation
Indices: 33898123--33898148 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33898113 TAAGGTAGCA
33898123 TGTAGCTACATTT
1 TGTAGCTACATTT
33898136 TGTAGCTACATTT
1 TGTAGCTACATTT
33898149 GATGCACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
TGTAGCTACATTT
Found at i:33904079 original size:57 final size:57
Alignment explanation
Indices: 33903981--33904088 Score: 146
Period size: 57 Copynumber: 1.9 Consensus size: 57
33903971 TGTGCCTTGG
33903981 CTATGTGGATTTTAAGTATCAACAGTGAGTCACACGACCTGGGCACACGCCCGTGTC
1 CTATGTGGATTTTAAGTATCAACAGTGAGTCACACGACCTGGGCACACGCCCGTGTC
* * * * * *
33904038 CTATGTGG-TTTTATATTATGAACAGTGAGTTATATGGCCTGGGCACACGCC
1 CTATGTGGATTTTA-AGTATCAACAGTGAGTCACACGACCTGGGCACACGCC
33904089 TATGTCCTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
56 5 0.11
57 39 0.89
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (57 bp):
CTATGTGGATTTTAAGTATCAACAGTGAGTCACACGACCTGGGCACACGCCCGTGTC
Found at i:33904948 original size:26 final size:26
Alignment explanation
Indices: 33904917--33904967 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33904907 TACAGACAGA
* *
33904917 TGCTTAACCAGTGAACTAGTAGGCTT
1 TGCTTAACCAGTGAACCAGCAGGCTT
*
33904943 TGCTTAACTAGTGAACCAGCAGGCT
1 TGCTTAACCAGTGAACCAGCAGGCT
33904968 CATTCTTGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
TGCTTAACCAGTGAACCAGCAGGCTT
Found at i:33908398 original size:47 final size:47
Alignment explanation
Indices: 33908340--33908786 Score: 741
Period size: 47 Copynumber: 9.5 Consensus size: 47
33908330 GTTCAGCCAA
33908340 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33908387 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
33908434 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
33908481 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33908530 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
33908577 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
33908624 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
33908671 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
33908718 GAAAGTGTATATATGTGACACGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33908765 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
33908787 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 330 0.88
49 47 0.12
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:33908961 original size:37 final size:37
Alignment explanation
Indices: 33908905--33908983 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
33908895 CCGAGCTCTA
* *
33908905 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
33908942 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33908979 AAGAC
1 AAGAC
33908984 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33911441 original size:6 final size:6
Alignment explanation
Indices: 33911423--33911510 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
33911413 AAAAAACATT
*
33911423 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
33911472 ATCAGA ATCAGT ATCAGGTA A-CATA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
33911511 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:33911444 original size:18 final size:18
Alignment explanation
Indices: 33911423--33911510 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
33911413 AAAAAACATT
33911423 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
33911441 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
33911458 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
* *
33911478 ATCAGTATCAGGTAA-CATA
1 ATCAGAATCA-G-AATCAGA
*
33911497 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
33911511 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 3 0.05
18 23 0.40
19 28 0.49
20 3 0.05
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:33911470 original size:31 final size:31
Alignment explanation
Indices: 33911432--33911510 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
33911422 TATCAGAACT
*
33911432 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
33911463 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
33911494 ATAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
33911511 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:33911662 original size:27 final size:26
Alignment explanation
Indices: 33911625--33911706 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 26
33911615 AGCATTACTG
* *
33911625 CCAGAACAGATATTGTGACAGAGCCA
1 CCAGAACAGATATTGTGGCAAAGCCA
33911651 CCAGATACAGATATTTGTGGCATAA-CCA
1 CCAGA-ACAGATA-TTGTGGCA-AAGCCA
*
33911679 CCAGAATCAGATACTGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
33911706 C
1 C
33911707 TTAATAGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
26 7 0.15
27 19 0.40
28 21 0.44
29 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:33911912 original size:22 final size:22
Alignment explanation
Indices: 33911864--33911922 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
33911854 GTAAATACGT
*
33911864 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
33911886 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
33911908 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
33911923 CGATAATGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:33912395 original size:81 final size:81
Alignment explanation
Indices: 33912271--33912538 Score: 376
Period size: 81 Copynumber: 3.3 Consensus size: 81
33912261 GGGCAAAATG
* * * * **
33912271 GTAATTTTACCTCAC-GAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 GTAATTCTACCTTACAG-GGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
**
33912335 CCTACAGGGGTATTTCG
65 CCTACAGGGGTATTTTA
*
33912352 GTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* *
33912417 TTACAAGGGTATTTTA
66 CTACAGGGGTATTTTA
* * * *
33912433 GTAATTGTACCTTATAGGGGTGTTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
33912498 CTACAGGGGTATTTTA
66 CTACAGGGGTATTTTA
*
33912514 GTAATTCTACCTTACAAGGGTATTT
1 GTAATTCTACCTTACAGGGGTATTT
33912539 CGATAATTTT
Statistics
Matches: 164, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 163 0.99
82 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
CTACAGGGGTATTTTA
Found at i:33912545 original size:27 final size:27
Alignment explanation
Indices: 33912271--33912546 Score: 312
Period size: 27 Copynumber: 10.2 Consensus size: 27
33912261 GGGCAAAATG
* *
33912271 GTAATTTTACCTCAC-GAGGGTATCTTG-
1 GTAATTCTACCTTACAG-GGGTAT-TTGA
* *
33912298 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTGA
*
33912325 GTAATTCTACCCTACAGGGGTATTTCG-
1 GTAATTCTACCTTACAGGGGTATTT-GA
*
33912352 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTGA
33912379 GTAATTCTACCTTACAGGGGTATTTCG-
1 GTAATTCTACCTTACAGGGGTATTT-GA
* *
33912406 GTAATTCTACCTTACAAGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTGA
* * * *
33912433 GTAATTGTACCTTATAGGGGTGTTTCA
1 GTAATTCTACCTTACAGGGGTATTTGA
*
33912460 GTAATTCTACCCTACAGGGGTATTTCG-
1 GTAATTCTACCTTACAGGGGTATTT-GA
* *
33912487 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTGA
*
33912514 GTAATTCTACCTTACAAGGGTATTTCGA
1 GTAATTCTACCTTACAGGGGTATTT-GA
33912542 -TAATT
1 GTAATT
33912547 TTGTAAATCG
Statistics
Matches: 216, Mismatches: 24, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.01
27 212 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCTTACAGGGGTATTTGA
Found at i:33912546 original size:54 final size:54
Alignment explanation
Indices: 33912288--33912538 Score: 360
Period size: 54 Copynumber: 4.6 Consensus size: 54
33912278 TACCTCACGA
*
33912288 GGGTATCTT-GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAG
1 GGGTAT-TTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAG
*
33912342 GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAG
* * * *
33912396 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTTAGTAATTGTACCTTATAG
1 GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAG
* * * **
33912450 GGGTGTTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAG
** *
33912504 GGGTATTTTAGTAATTCTACCTTACAAGGGTATTT
1 GGGTATTTCGGTAATTCTACCTTACAGGGGTATTT
33912539 CGATAATTTT
Statistics
Matches: 178, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 2 0.01
54 176 0.99
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAG
Found at i:33912904 original size:27 final size:27
Alignment explanation
Indices: 33912584--33912897 Score: 402
Period size: 27 Copynumber: 11.7 Consensus size: 27
33912574 CTGTAAATCG
* **
33912584 GGGGTACTTTGGTAATTTTACAAGTC-
1 GGGGTATTTTGGTAATTTTACAAACCA
* * *
33912610 GAGGGTATTTTAGTAATTTTGCAAATC-
1 G-GGGTATTTTGGTAATTTTACAAACCA
* * *
33912637 GAGGGTATTTTAGTAATTTTGCAAACTA
1 G-GGGTATTTTGGTAATTTTACAAACCA
* * * * *
33912665 -AGGTATTTCGATAATTTCACAAATCA
1 GGGGTATTTTGGTAATTTTACAAACCA
*
33912691 AGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
*
33912718 AGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
33912745 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
33912772 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
33912799 GGGGTATTTTGGTAATTTTACAAATCCA
1 GGGGTATTTTGGTAATTTTACAAA-CCA
**
33912827 -GGGTATTTTGGTAATTTTGTAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
*
33912853 AGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACCA
33912880 GGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTT
33912898 GGTAAACTAA
Statistics
Matches: 258, Mismatches: 25, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
26 22 0.09
27 233 0.90
28 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACCA
Found at i:33917084 original size:40 final size:40
Alignment explanation
Indices: 33917021--33917241 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
33917011 CGGATGTAAC
*
33917021 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* *
33917061 AACCCGCACGAATACCTTTGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* * *
33917101 AACCCGCACGAATACCTTCGAGATTTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* *
33917141 AACCAGCCCGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* * ** * *
33917181 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TACCTTCGGGA-CTTAACCCGGTTATAAT
* * *
33917221 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATACCTTCGG
33917242 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 5 0.03
40 152 0.95
41 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
Found at i:33917242 original size:40 final size:40
Alignment explanation
Indices: 33917011--33917257 Score: 160
Period size: 40 Copynumber: 6.2 Consensus size: 40
33917001 TAATTTGTCT
* * * * **
33917011 CGGATGTAACAACCAGCACGAATGCCTTCGGGA-CTTAACC
1 CGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGTC
* ** * * * **
33917051 CGGTTATAATAACCCGCACGAATACCTTTGGGA-CTTAACC
1 CGGATATAATAACTAGCACAAATGCC-TTCGGATCTTAGTC
* ** * * **
33917091 CGGTTATAATAACCCGCACGAATACCTTCGAGAT-TTAACC
1 CGGATATAATAACTAGCACAAATGCCTTCG-GATCTTAGTC
* * * * **
33917131 CGGTTATAATAACCAGCCCGAATGCCTTCGGGA-CTTAACC
1 CGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGTC
* *
33917171 CGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
*
33917211 CGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
33917251 CGGATAT
1 CGGATAT
33917258 CATCCGAATA
Statistics
Matches: 182, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 6 0.03
40 173 0.95
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
Found at i:33925263 original size:40 final size:40
Alignment explanation
Indices: 33925210--33925367 Score: 280
Period size: 40 Copynumber: 4.0 Consensus size: 40
33925200 TGTAACAACT
*
33925210 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATACCTTCGGGACTTAACCCGGTTATAATAACCC
*
33925250 GCATGAATACCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATACCTTCGGGACTTAACCCGGTTATAATAACCC
*
33925290 GCACGAATACCTTCGGGATTTAACCCGGTTATAATAACCC
1 GCACGAATACCTTCGGGACTTAACCCGGTTATAATAACCC
*
33925330 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAAC
1 GCACGAATACCTTCGGGACTTAACCCGGTTATAATAAC
33925368 TAGCACAATT
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
GCACGAATACCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:33925381 original size:40 final size:39
Alignment explanation
Indices: 33925210--33925385 Score: 253
Period size: 40 Copynumber: 4.4 Consensus size: 39
33925200 TGTAACAACT
33925210 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCAC-AATGCCTTCGGGACTTAACCCGGTTATAATAACCC
* *
33925250 GCATGAATACCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCA-CAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
* *
33925290 GCACGAATACCTTCGGGATTTAACCCGGTTATAATAACCC
1 GCAC-AATGCCTTCGGGACTTAACCCGGTTATAATAACCC
**
33925330 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTA
1 GCAC-AATGCCTTCGGGACTTAACCCGGTTATAATAACCC
33925370 GCACAATTGCCTTCGG
1 GCACAA-TGCCTTCGG
33925386 ATCTTAGTTC
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.02
40 123 0.98
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:33925383 original size:80 final size:80
Alignment explanation
Indices: 33925210--33925385 Score: 282
Period size: 80 Copynumber: 2.2 Consensus size: 80
33925200 TGTAACAACT
*
33925210 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCATGAATACCTTCGGGACTTAACC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATACCTTCGGGACTTAACC
*
33925275 CGGTTATAATAACCC
66 CGGTTATAATAACCA
* * *
33925290 GCACGAATACCTTCGGGATTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGGGACTTAACC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATACCTTCGGGACTTAACC
*
33925355 CGGTTATAATAACTA
66 CGGTTATAATAACCA
33925370 GCAC-AATTGCCTTCGG
1 GCACGAA-TGCCTTCGG
33925386 ATCTTAGTTC
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 2 0.02
80 86 0.98
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATACCTTCGGGACTTAACC
CGGTTATAATAACCA
Found at i:33925408 original size:40 final size:40
Alignment explanation
Indices: 33925319--33925441 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 40
33925309 TTAACCCGGT
** * ** * *
33925319 TATAATAACCCGCACGAATGCCTTCGGGA-CTTAACCCGGT
1 TATAATAACTAGCACAAATGCCTTC-GGATCTTAGTCTGGA
*
33925359 TATAATAACTAGCACAATTGCCTTCGGATCTTAGT-TCGGA
1 TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCT-GGA
*
33925399 TATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
1 TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
33925439 TAT
1 TAT
33925442 CATCCGAATA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.04
40 66 0.94
41 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (40 bp):
TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCTGGA
Found at i:33925419 original size:80 final size:80
Alignment explanation
Indices: 33925210--33925425 Score: 238
Period size: 80 Copynumber: 2.7 Consensus size: 80
33925200 TGTAACAACT
* * * * ** *
33925210 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCATGAATACCTTCGGGACTTAACC
1 GCACGAATACCTTCGGGATTTAACCCGGATATAATAACCAGCACAAATGCCTTCGGGACTTAACC
*
33925275 CGGTTATAATAACCC
66 CGGTTATAATAACCA
* * *
33925290 GCACGAATACCTTCGGGATTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGGGACTTAACC
1 GCACGAATACCTTCGGGATTTAACCCGGATATAATAACCAGCACAAATGCCTTCGGGACTTAACC
*
33925355 CGGTTATAATAACTA
66 CGGTTATAATAACCA
* *** * *
33925370 GCAC-AATTGCCTTC-GGATCTTAGTTCGGATATAGTAACTAGCACAAATGCCTTCGG
1 GCACGAA-TACCTTCGGGAT-TTAACCCGGATATAATAACCAGCACAAATGCCTTCGG
33925426 ATCTTAGTCT
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 6 0.05
80 113 0.95
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (80 bp):
GCACGAATACCTTCGGGATTTAACCCGGATATAATAACCAGCACAAATGCCTTCGGGACTTAACC
CGGTTATAATAACCA
Found at i:33925423 original size:120 final size:120
Alignment explanation
Indices: 33925210--33925425 Score: 283
Period size: 120 Copynumber: 1.8 Consensus size: 120
33925200 TGTAACAACT
* *
33925210 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCATGAATACCTTCGGGACTTAACC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCATCAATACCTTCGGGACTTAACC
* * *
33925275 CGGTTATAATAACCCGCACGAATACCTTCGGGATTTAACCCGGTTATAATAACCC
66 CGGATATAATAACCAGCACAAATACCTTCGGGATTTAACCCGGTTATAATAACCC
* * *
33925330 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCA-CAATTGCCTTC-GGATCTTAG
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCATCAA-TACCTTCGGGA-CTTAA
** * * *
33925393 TTCGGATATAGTAACTAGCACAAATGCCTTCGG
64 CCCGGATATAATAACCAGCACAAATACCTTCGG
33925426 ATCTTAGTCT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
119 5 0.06
120 76 0.94
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (120 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCATCAATACCTTCGGGACTTAACC
CGGATATAATAACCAGCACAAATACCTTCGGGATTTAACCCGGTTATAATAACCC
Found at i:33936463 original size:23 final size:23
Alignment explanation
Indices: 33936437--33936482 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
33936427 TACGACAAGA
*
33936437 TAAAATTATTGTGTGAAAATTTC
1 TAAAATGATTGTGTGAAAATTTC
33936460 TAAAATGATTGTGTGAAAATTTC
1 TAAAATGATTGTGTGAAAATTTC
33936483 GTTAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.41
Consensus pattern (23 bp):
TAAAATGATTGTGTGAAAATTTC
Found at i:33941701 original size:27 final size:27
Alignment explanation
Indices: 33941642--33941751 Score: 89
Period size: 27 Copynumber: 4.0 Consensus size: 27
33941632 ACCCCTGGTT
* * * *
33941642 TGTAAAATGACCGTAATGCCCCTGTAG
1 TGTAAAATGACCGAAATACCCTTATAG
33941669 -GATAAAATGACCGAAATACCCTTATAG
1 TG-TAAAATGACCGAAATACCCTTATAG
* *
33941696 TGTAAAATTACTGAAATACCC-TATAG
1 TGTAAAATGACCGAAATACCCTTATAG
* ** *
33941722 AGCGAAATGACCGTAATACCCCTGTATAG
1 TGTAAAATGACCGAAATA-CCCT-TATAG
33941751 T
1 T
33941752 AACATGACGA
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 18 0.28
27 41 0.63
28 1 0.02
29 5 0.08
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTATAG
Found at i:33941739 original size:26 final size:27
Alignment explanation
Indices: 33941672--33941742 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 27
33941662 CCTGTAGGAT
* *
33941672 AAAATGACCGAAATACCCTTATAGTGT
1 AAAATGACCGAAATACCCTTATAGAGC
* *
33941699 AAAATTACTGAAATACCC-TATAGAGC
1 AAAATGACCGAAATACCCTTATAGAGC
* *
33941725 GAAATGACCGTAATACCC
1 AAAATGACCGAAATACCC
33941743 CTGTATAGTA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 20 0.56
27 16 0.44
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTTATAGAGC
Found at i:33942173 original size:33 final size:34
Alignment explanation
Indices: 33942131--33942201 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
33942121 TTAGGCCCAC
* * *
33942131 ACTGTTACTGTATAGGGCTAAGGACCAGGCTG-T
1 ACTGATACTGAATAGGGCTAAGGACCAGACTGTT
* *
33942164 ACTGATACTGAATAGGGCTCAGGCCCAGACTGTT
1 ACTGATACTGAATAGGGCTAAGGACCAGACTGTT
33942198 ACTG
1 ACTG
33942202 CATGCACTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (34 bp):
ACTGATACTGAATAGGGCTAAGGACCAGACTGTT
Found at i:33947985 original size:27 final size:27
Alignment explanation
Indices: 33947954--33948131 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33947944 TAAATTGTAC
33947954 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33947981 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33948007 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33948035 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33948063 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33948090 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33948117 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33948132 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33948068 original size:82 final size:81
Alignment explanation
Indices: 33947955--33948110 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33947945 AAATTGTACA
* *
33947955 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33948019 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33948036 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33948101 TGCGAGTTGA
65 TGCGAATTGA
33948111 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33948122 original size:82 final size:81
Alignment explanation
Indices: 33947951--33948131 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33947941 GATTAAATTG
* *
33947951 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33948016 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33948032 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33948096 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33948114 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33948132 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33955733 original size:27 final size:27
Alignment explanation
Indices: 33955702--33955879 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
33955692 TAAATTGTAC
*
33955702 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33955729 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33955755 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33955783 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33955811 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33955838 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33955865 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33955880 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33955816 original size:82 final size:81
Alignment explanation
Indices: 33955703--33955858 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
33955693 AAATTGTACA
* * *
33955703 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33955767 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33955784 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33955849 TGCGAGTTGA
65 TGCGAATTGA
33955859 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33955870 original size:82 final size:81
Alignment explanation
Indices: 33955699--33955879 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
33955689 GATTAAATTG
* * *
33955699 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33955764 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33955780 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33955844 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33955862 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33955880 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33958691 original size:50 final size:50
Alignment explanation
Indices: 33958616--33958715 Score: 155
Period size: 50 Copynumber: 2.0 Consensus size: 50
33958606 CGTCTTACTC
* ** * *
33958616 GCACACATATATCGGAGTCACATATCGATGTGAACGTATAAAATGTGGTT
1 GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
33958666 GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
1 GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
33958716 TTACTCGCAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (50 bp):
GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
Found at i:33959913 original size:14 final size:15
Alignment explanation
Indices: 33959896--33959924 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33959886 GCACGAAAAT
33959896 TTCACACA-AATAAA
1 TTCACACATAATAAA
33959910 TTCACACATAATAAA
1 TTCACACATAATAAA
33959925 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:33965975 original size:47 final size:47
Alignment explanation
Indices: 33965907--33966025 Score: 211
Period size: 47 Copynumber: 2.5 Consensus size: 47
33965897 ATCCATAAGT
*
33965907 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
33965954 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
33966001 GAACTTAGACTCAACTCAACGAGTT
1 GAACTCAGACTCAACTCAACGAGTT
33966026 TGGACGTTCG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33968391 original size:15 final size:15
Alignment explanation
Indices: 33968353--33968412 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
33968343 AAGAAAACCG
*
33968353 AATAAAGAAATCCAA
1 AATAAAGAAACCCAA
* **
33968368 GATTGAGAAACCCAA
1 AATAAAGAAACCCAA
* *
33968383 AATAAAGAAATCCAG
1 AATAAAGAAACCCAA
33968398 AATAAAGAAACCCAA
1 AATAAAGAAACCCAA
33968413 GATACGATAC
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
AATAAAGAAACCCAA
Found at i:33968407 original size:30 final size:30
Alignment explanation
Indices: 33968353--33968412 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
33968343 AAGAAAACCG
**
33968353 AATAAAGAAATCCAAGATTGAGAAACCCAA
1 AATAAAGAAATCCAAGATAAAGAAACCCAA
33968383 AATAAAGAAATCC-AGAATAAAGAAACCCAA
1 AATAAAGAAATCCAAG-ATAAAGAAACCCAA
33968413 GATACGATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.12
Consensus pattern (30 bp):
AATAAAGAAATCCAAGATAAAGAAACCCAA
Found at i:33971515 original size:46 final size:46
Alignment explanation
Indices: 33971391--33971518 Score: 190
Period size: 46 Copynumber: 2.8 Consensus size: 46
33971381 TGTAACCCGC
*
33971391 CCATAAGTGAA-TCGGACTCAACTCAACGAGCTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
33971436 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
33971482 CCATAAGTGAACTCAGACTCAACTCAATC-AGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAA-CGAGTTCGGA
33971519 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 3, Indels: 5
0.91 0.04 0.06
Matches are distributed among these distances:
45 13 0.17
46 63 0.82
47 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.