Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 106 of 373
Found at i:34597906 original size:98 final size:98
Alignment explanation
Indices: 34597731--34597915 Score: 221
Period size: 98 Copynumber: 1.9 Consensus size: 98
34597721 TTGGGGTTGG
* * * * *
34597731 ATGAGATCCCGTATAAGACCATATCTGGGATATGGGATTGGCATTGGTATGTGTTATCATGTAAG
1 ATGAGATCCCATATAAGACCATATCTGGGACATGGCATTGGCATTCGTATGTGTGATCATGTAAG
* * *
34597796 ACCATGTTTGGGACATGGCATTGGCATCGACAT
66 ACCATATCTGGGACATGACATTGGCATCGACAT
* * * *
34597829 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-TCGTTTG-GTGATCCTATGTA
1 ATGAGATCCCATATAAGACCATATCTGGGACATGGCATTGGCATTCGTATGTGTGAT-C-ATGTA
*
34597892 AGACCATATCTGGGATATGACATT
64 AGACCATATCTGGGACATGACATT
34597916 AACATCTTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
96 4 0.06
97 6 0.08
98 62 0.86
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (98 bp):
ATGAGATCCCATATAAGACCATATCTGGGACATGGCATTGGCATTCGTATGTGTGATCATGTAAG
ACCATATCTGGGACATGACATTGGCATCGACAT
Found at i:34608767 original size:76 final size:76
Alignment explanation
Indices: 34608686--34608839 Score: 263
Period size: 76 Copynumber: 2.0 Consensus size: 76
34608676 TATATATTAT
* * * * *
34608686 ATATATGTATGCATGTGTTAATGCCTTGTTAGTGATGTAGTTTTTTAATGCTTGGCAAATGGTTG
1 ATATATGCATGCATGTGTCAATGCCTTGTGAGTGATGTAGTTTATTAATGCTTGACAAATGGTTG
34608751 AGTGTGGCTTA
66 AGTGTGGCTTA
34608762 ATATATGCATGCATGTGTCAATGCCTTGTGAGTGATGTAGTTTATTAATGCTTGACAAATGGTTG
1 ATATATGCATGCATGTGTCAATGCCTTGTGAGTGATGTAGTTTATTAATGCTTGACAAATGGTTG
34608827 AGTGTGGCTTA
66 AGTGTGGCTTA
34608838 AT
1 AT
34608840 GGGTTGTTGA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.24, C:0.09, G:0.26, T:0.41
Consensus pattern (76 bp):
ATATATGCATGCATGTGTCAATGCCTTGTGAGTGATGTAGTTTATTAATGCTTGACAAATGGTTG
AGTGTGGCTTA
Found at i:34616610 original size:42 final size:42
Alignment explanation
Indices: 34616557--34616707 Score: 162
Period size: 42 Copynumber: 3.6 Consensus size: 42
34616547 GTAACACTAT
34616557 GTGTAAGACCATATCTGGGATATGACATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGACATCTATATGAGACTTC
* * **
34616599 GTGTAACACCATATCTGAGATACAACAT-TGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGACATCT-ATATGAGACTTC
* * * * *
34616641 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGA-TTAC
1 GTGTAAGACCATATCTGGGATA-TGACATCTATATGAGACTT-C
* *
34616684 ATGTAAGACCATATATGGGATATG
1 GTGTAAGACCATATCTGGGATATG
34616708 GAATTGGTAT
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 58 0.66
43 29 0.33
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGACATCTATATGAGACTTC
Found at i:34618303 original size:42 final size:42
Alignment explanation
Indices: 34618193--34618362 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 42
34618183 ATCCGATATG
* * *
34618193 TGTTTTCATGTAAGACAACG-CTTGGGACGTTGGCATCG-ACTT
1 TGTTTACATGTAAGACCACGTC-TGGGACGTTGGCATTGTA-TT
* * * * *
34618235 ATGATTTACGTGTAAAAACACATCTGGGATGTTGGCATTGTATT
1 -TG-TTTACATGTAAGACCACGTCTGGGACGTTGGCATTGTATT
* ** **
34618279 TGATTT-CGTGTAAGACCTTGTCTGGGACAATGGCATTGATATT
1 TG-TTTACATGTAAGACCACGTCTGGGACGTTGGCATTG-TATT
34618322 TGTTTACATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TGTTTACATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
34618363 GAGCTTTCTA
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
42 30 0.30
43 41 0.41
44 28 0.28
45 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (42 bp):
TGTTTACATGTAAGACCACGTCTGGGACGTTGGCATTGTATT
Found at i:34625665 original size:17 final size:17
Alignment explanation
Indices: 34625643--34625685 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
34625633 TCTTCCATAC
34625643 GAGCTTACTAAGCTATA
1 GAGCTTACTAAGCTATA
*
34625660 GAGCTTGCTAAGCTATA
1 GAGCTTACTAAGCTATA
*
34625677 TAGCTTACT
1 GAGCTTACT
34625686 CCATTTTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (17 bp):
GAGCTTACTAAGCTATA
Found at i:34632382 original size:48 final size:48
Alignment explanation
Indices: 34632246--34632396 Score: 178
Period size: 48 Copynumber: 3.1 Consensus size: 48
34632236 GTGAGTATTT
* * **
34632246 AGATCCCATATAAGACCATATTTGGGATATGGCATCGACATCAAAATG
1 AGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCAGTATG
* * * * *
34632294 AGATCTCGTGTAAGACCATATCTGAGACATGGCATCGGCATCAGTATG
1 AGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCAGTATG
* *
34632342 AGATCCCATGTAAGACCATATTTGGGATGTGGCATTGGCATC-GATATG
1 AGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCAG-TATG
*
34632390 AGGTCCC
1 AGATCCC
34632397 GTCCAAGATC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
47 1 0.01
48 84 0.99
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (48 bp):
AGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCAGTATG
Found at i:34632457 original size:96 final size:96
Alignment explanation
Indices: 34632246--34632440 Score: 239
Period size: 96 Copynumber: 2.0 Consensus size: 96
34632236 GTGAGTATTT
* * * * **
34632246 AGATCCCATATAAGACCATATTTGGGATATGGCATCGACATCAAAATGAGATCTCGTGTAAGACC
1 AGATCCCATGTAAGACCATATTTGGGATGTGGCATTGACATCAAAATGAGATCCCGTCCAAGACC
* *
34632311 ATATCTGAGACATGGCATCGGCATCAGTATG
66 ATATCTGAGACATGGCATCGACACCAGTATG
* * * * *
34632342 AGATCCCATGTAAGACCATATTTGGGATGTGGCATTGGCATCGATATGAGGTCCCGTCCAAGATC
1 AGATCCCATGTAAGACCATATTTGGGATGTGGCATTGACATCAAAATGAGATCCCGTCCAAGACC
* *
34632407 ATGTCT-AGGACATGGCATCGACACCATTATG
66 ATATCTGA-GACATGGCATCGACACCAGTATG
34632438 AGA
1 AGA
34632441 CTTTGTGTAA
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 1 0.01
96 82 0.99
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (96 bp):
AGATCCCATGTAAGACCATATTTGGGATGTGGCATTGACATCAAAATGAGATCCCGTCCAAGACC
ATATCTGAGACATGGCATCGACACCAGTATG
Found at i:34638420 original size:40 final size:40
Alignment explanation
Indices: 34638360--34638543 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
34638350 TATTCGAATG
*
34638360 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
34638400 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
34638440 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
34638480 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
34638520 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
34638544 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:34638493 original size:80 final size:80
Alignment explanation
Indices: 34638360--34638579 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
34638350 TATTCGAATG
* * * *
34638360 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
34638424 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
34638440 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
34638504 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
34638520 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
34638580 ATACTTTGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 90 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:34661651 original size:21 final size:20
Alignment explanation
Indices: 34661627--34661665 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34661617 TCATGTTGAT
34661627 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
*
34661648 TTCGTTTTTGGCCCATTT
1 TTCGTCTTTGGCCCATTT
34661666 CTCGTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:34674530 original size:48 final size:48
Alignment explanation
Indices: 34674475--34674813 Score: 547
Period size: 48 Copynumber: 7.0 Consensus size: 48
34674465 ATGTGTATAC
34674475 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
34674523 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
34674571 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* * *
34674619 ATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGT
*
34674669 ATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
34674717 ATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGT
*
34674767 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
34674814 ACAGTCGATG
Statistics
Matches: 270, Mismatches: 13, Indels: 16
0.90 0.04 0.05
Matches are distributed among these distances:
47 2 0.01
48 177 0.66
49 8 0.03
50 81 0.30
51 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
Found at i:34674724 original size:98 final size:98
Alignment explanation
Indices: 34674470--34674813 Score: 604
Period size: 98 Copynumber: 3.5 Consensus size: 98
34674460 TGTGAATGTG
* *
34674470 TATACATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
34674535 TATGTGGTAAAGCCGAATGG-CTAATGTG-AA-A
66 TATGTGGTAAAGCCGAATGGTC-AATGTGAAATA
*
34674566 TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
*
34674631 TATGTGGTAAAGCTGAATGGTCAATGTGAAATA
66 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
*
34674664 TATATATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
34674729 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
66 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
*
34674762 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
34674814 ACAGTCGATG
Statistics
Matches: 236, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
96 87 0.37
97 3 0.01
98 146 0.62
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
Found at i:34674737 original size:146 final size:148
Alignment explanation
Indices: 34674470--34674812 Score: 554
Period size: 146 Copynumber: 2.3 Consensus size: 148
34674460 TGTGAATGTG
* *
34674470 TATACATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATG
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
*
34674533 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
34674598 AATGG-CTAATGTG-AA-A
131 AATGGTC-AATGTGAAATA
* * * *
34674614 TATGTATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGGTAT
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATAT
34674678 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCC
65 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCC
34674743 GAATGGTCAATGTGAAATA
130 GAATGGTCAATGTGAAATA
*
34674762 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
34674813 GACAGTCGAT
Statistics
Matches: 181, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
143 1 0.01
144 39 0.22
145 2 0.01
146 89 0.49
147 3 0.02
148 46 0.25
149 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (148 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGTCAATGTGAAATA
Found at i:34674926 original size:37 final size:37
Alignment explanation
Indices: 34674872--34674979 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
34674862 GGAAATATAT
*
34674872 TCCGGGTAAGACACGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34674909 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
34674946 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
34674980 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34676225 original size:31 final size:31
Alignment explanation
Indices: 34676187--34676250 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
34676177 TACTTCTGTA
34676187 ATTATTAGAAGCAAATGATTGTGACTTACTC
1 ATTATTAGAAGCAAATGATTGTGACTTACTC
34676218 ATTATTAGAAGCAAATGATTGTGACTTACTC
1 ATTATTAGAAGCAAATGATTGTGACTTACTC
34676249 AT
1 AT
34676251 AGTTCTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (31 bp):
ATTATTAGAAGCAAATGATTGTGACTTACTC
Found at i:34676531 original size:34 final size:34
Alignment explanation
Indices: 34676486--34676553 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
34676476 TTCCTGTTCG
34676486 GACACAATCATATTTCTCTACTTGAGTTCTAAAA
1 GACACAATCATATTTCTCTACTTGAGTTCTAAAA
*
34676520 GACACAGTCATATTTCTCTACTTGAGTTCTAAAA
1 GACACAATCATATTTCTCTACTTGAGTTCTAAAA
34676554 ATTCTTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (34 bp):
GACACAATCATATTTCTCTACTTGAGTTCTAAAA
Found at i:34678884 original size:47 final size:46
Alignment explanation
Indices: 34678785--34679047 Score: 202
Period size: 46 Copynumber: 5.6 Consensus size: 46
34678775 ATTGTTGGCT
34678785 AGTGTAAGACATGTCTGGGACATGCATCGTCCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGT---CATTGAGATGAGAGCC
* * *
34678831 AATGTAAGACCATGTCTGGGACATGGCATCGTTATTGAGATGAGA-CT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGTCATTGAGATGAGAGCC
* * * * * *
34678878 AGTGTAAGACATGTTTGGGACCTGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGTCATTGAGATG-AGAGCC
* * *
34678924 AGTGTAAGACATGTCTGGGACATGCATCGGC-TATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGTCAT-TGAGATGAGAGCC
*
34678970 AGTGTAAGACCA-GTTCTGGGACATGGCATCGAC-TTGAGAT-ATGAGCC
1 AGTGTAAGA-CATG-TCTGGGACAT-GCATCGTCATTGAGATGA-GAGCC
* * *
34679017 AGTGTTAGACCATGTTTAGGACATAGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
34679048 GCACCTTATC
Statistics
Matches: 179, Mismatches: 24, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
45 18 0.10
46 70 0.39
47 69 0.39
48 22 0.12
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGTCATTGAGATGAGAGCC
Found at i:34692421 original size:27 final size:27
Alignment explanation
Indices: 34692387--34692564 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
34692377 TAAATTGTAC
34692387 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34692414 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
34692440 ATGCACTAAGTGTGTGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34692468 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34692496 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34692523 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34692550 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34692565 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34692555 original size:82 final size:81
Alignment explanation
Indices: 34692384--34692564 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
34692374 CATTAAATTG
* *
34692384 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
34692449 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34692465 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34692529 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34692547 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34692565 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34704366 original size:42 final size:42
Alignment explanation
Indices: 34704260--34704372 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
34704250 TAGAGAACAT
* *
34704260 ATACAATGCCAATGTCCCAGA-GGTGGTCTTACATGTAATCAA
1 ATACAATGCCAATGTCCCAGACAG-GGTCTTACACGTAATCAA
* * *
34704302 ACATCAATGCCACTGTCCCAGACAGGGTCTTACACG-AAGTCAG
1 ATA-CAATGCCAATGTCCCAGACAGGGTCTTACACGTAA-TCAA
* *
34704345 ATACGATGCCAATGTCCCAGACATGGTC
1 ATACAATGCCAATGTCCCAGACAGGGTC
34704373 CTACGTGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.44
43 32 0.54
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAA
Found at i:34707459 original size:30 final size:30
Alignment explanation
Indices: 34707425--34707482 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
34707415 GCTTATGTGC
34707425 ATGAAAGAGTGGTAAGAATCAAAGTATGCA
1 ATGAAAGAGTGGTAAGAATCAAAGTATGCA
34707455 ATGAAAGAGTGGTAAGAATCAAAGTATG
1 ATGAAAGAGTGGTAAGAATCAAAGTATG
34707483 TAATTTCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.47, C:0.05, G:0.28, T:0.21
Consensus pattern (30 bp):
ATGAAAGAGTGGTAAGAATCAAAGTATGCA
Found at i:34707650 original size:14 final size:15
Alignment explanation
Indices: 34707631--34707660 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
34707621 GATGTCACAT
34707631 TAAAGTGAGTT-TCG
1 TAAAGTGAGTTATCG
34707645 TAAAGTGAGTTATCG
1 TAAAGTGAGTTATCG
34707660 T
1 T
34707661 TTAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TAAAGTGAGTTATCG
Found at i:34716537 original size:26 final size:27
Alignment explanation
Indices: 34716508--34716565 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
34716498 TATAATCACT
34716508 TATCTCATAG-GGCATAACAGCCATTC
1 TATCTCATAGAGGCATAACAGCCATTC
* * *
34716534 TATCACATAGAGGCATAATAGTCATTC
1 TATCTCATAGAGGCATAACAGCCATTC
34716561 TATCT
1 TATCT
34716566 ATTAGGGTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (27 bp):
TATCTCATAGAGGCATAACAGCCATTC
Found at i:34719034 original size:46 final size:46
Alignment explanation
Indices: 34718984--34719157 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
34718974 GTTGAGCATT
*
34718984 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* * * *
34719030 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTC
* * * * *
34719077 CGAACCCGTTGAGTTGATTCCGAGTTCACTCATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* *
34719123 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34719158 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:34719143 original size:93 final size:93
Alignment explanation
Indices: 34718979--34719150 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
34718969 GGATGGTTGA
* * * * *
34718979 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
34719044 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
34719072 GCATCCGAACCCGTTGAGTTGATTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
34719137 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34719151 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34723473 original size:5 final size:5
Alignment explanation
Indices: 34723460--34723491 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
34723450 GATAAAAGCT
*
34723460 TTTAG TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TT
34723492 ATCAAATTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (5 bp):
TTTAA
Found at i:34724636 original size:33 final size:33
Alignment explanation
Indices: 34724594--34724656 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
34724584 TCGTGGATAA
34724594 ACAAAATTTATTCTTGAATCTAAAAATGAATAC
1 ACAAAATTTATTCTTGAATCTAAAAATGAATAC
34724627 ACAAAATTTATTCTTGAATCTAAAAATGAA
1 ACAAAATTTATTCTTGAATCTAAAAATGAA
34724657 CTCTAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.33
Consensus pattern (33 bp):
ACAAAATTTATTCTTGAATCTAAAAATGAATAC
Found at i:34738903 original size:48 final size:49
Alignment explanation
Indices: 34738795--34738918 Score: 169
Period size: 48 Copynumber: 2.5 Consensus size: 49
34738785 TGTCTTCAAC
** * *
34738795 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* *
34738845 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
*
34738893 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
34738919 CTGTCCTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
48 36 0.55
50 30 0.45
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:34740318 original size:273 final size:273
Alignment explanation
Indices: 34739831--34740367 Score: 700
Period size: 273 Copynumber: 2.0 Consensus size: 273
34739821 TTACAGCGAA
* *
34739831 AAACACCCATAGTGAGCTTGGATCTGAATTAACAGTCCAGGCTAAATTCAGACCCTAGTCGGATT
1 AAACACCCATAGTGAGCTCGGATCTGAATTAACAGTCCAGGCTAAATTCAGACCCTAGTCGAATT
* * * *
34739896 ACACGTCCGAGCTAAATCCACAATGCACATATATTCTTCGAGAGGCTCGATCGCTCATGCAACAC
66 ACACGTCCGAGCTAAATCCACAATGCACACATATTCTTCGAGAGGCTCAATCACTCAAGCAACAC
* *
34739961 CTGTCTGAGCTAGATCCTTCCAATATTTGAGATAAATCAATTACCCGTCCGGGCTAAATTCTTTT
131 CTGTCCGAGCTAGATCCTTCCAATATTTGAGATAAATCAATTACCCGTCCGGGCTAAATCCTTTT
* *
34740026 CTGCAACACATGCAGGATCTCAAGGCATATAAGTCATGGTATATCCATCAAATTTTCCTTTTTGA
196 CTGCAACACATGCAGGATCTCAAGGCATATAAGCCATGGTATATCCATCAAATTTCCCTTTTTGA
34740091 CTTCCACAGTGAC
261 CTTCCACAGTGAC
* * * ** *
34740104 AAACACCCGTAGTGAGCTCGGATCTGAATTACCAGTCTAGGCTAAATTTTGACTCTAGTCGAATT
1 AAACACCCATAGTGAGCTCGGATCTGAATTAACAGTCCAGGCTAAATTCAGACCCTAGTCGAATT
* * * * * * *
34740169 ACCCGTCCGGGCTGAATCCACAATGCACACGTATTCTTTGAGAGGCTCAATCACTCAAGGAATAC
66 ACACGTCCGAGCTAAATCCACAATGCACACATATTCTTCGAGAGGCTCAATCACTCAAGCAACA-
* * * * ** * * **
34740234 CCT-TCCGGGTTAGATCCTTCCTATATTTGAGATCAATGGATTGCTCGTCCTTGCTAAATCCTTT
130 CCTGTCCGAGCTAGATCCTTCCAATATTTGAGATAAATCAATTACCCGTCCGGGCTAAATCCTTT
* * * **
34740298 TCTAG-AACACATGCAGGATCTCAAGTCATGTAAGCCATGGTTTATCCATTGAATTTCCCTTTTT
195 TCT-GCAACACATGCAGGATCTCAAGGCATATAAGCCATGGTATATCCATCAAATTTCCCTTTTT
34740362 GACTTC
259 GACTTC
34740368 AACCGGGACA
Statistics
Matches: 224, Mismatches: 38, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
273 220 0.98
274 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (273 bp):
AAACACCCATAGTGAGCTCGGATCTGAATTAACAGTCCAGGCTAAATTCAGACCCTAGTCGAATT
ACACGTCCGAGCTAAATCCACAATGCACACATATTCTTCGAGAGGCTCAATCACTCAAGCAACAC
CTGTCCGAGCTAGATCCTTCCAATATTTGAGATAAATCAATTACCCGTCCGGGCTAAATCCTTTT
CTGCAACACATGCAGGATCTCAAGGCATATAAGCCATGGTATATCCATCAAATTTCCCTTTTTGA
CTTCCACAGTGAC
Found at i:34750231 original size:45 final size:46
Alignment explanation
Indices: 34750171--34750285 Score: 144
Period size: 47 Copynumber: 2.5 Consensus size: 46
34750161 TGCACACTTT
* *
34750171 TCACAATTGGTCATTCGACCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGACCTTATCACATATAACACTTACACAT-TCA
* *
34750217 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGACCTTATCACATATA-ACACTTACACATTCA
*
34750264 TCACATTGGCCATTCGATCTTA
1 TCACATTGGCCATTCGACCTTA
34750286 AGCTAGATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 24 0.40
46 5 0.08
47 31 0.52
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGACCTTATCACATATAACACTTACACATTCA
Found at i:34752871 original size:22 final size:20
Alignment explanation
Indices: 34752831--34752871 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
34752821 AGTCCTATTA
*
34752831 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
34752851 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
34752872 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:34754150 original size:40 final size:40
Alignment explanation
Indices: 34754095--34754690 Score: 1003
Period size: 40 Copynumber: 14.9 Consensus size: 40
34754085 GAATACACAT
* *
34754095 CACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
34754135 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
** *
34754175 CTTCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
34754215 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
34754255 CACCAACACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
34754295 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
34754335 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
** *
34754375 CTTCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
34754415 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
34754455 CACCAACACAAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
34754495 CACCAGCACGAATGCTCTTCGGGACTTAGCCGGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
34754535 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
34754575 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
34754615 AACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
34754655 CTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
34754691 CATCGGCGAG
Statistics
Matches: 517, Mismatches: 39, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 517 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:34756060 original size:38 final size:38
Alignment explanation
Indices: 34756009--34756164 Score: 150
Period size: 38 Copynumber: 3.9 Consensus size: 38
34755999 AAAATGGAAA
*
34756009 AACGTGGTGCTAAGTGGATATACCATGGTTATATGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATATGTGT
* *
34756047 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATAT-G--T--GT
* * **
34756094 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATATGTGT
* *
34756132 AACGTGGTGCTAAGTGGATATGCCACAGTTATA
1 AACGTGGTGCTAAGTGGATATACCACGGTTATA
34756165 CATGTTAATT
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
38 56 0.58
39 1 0.01
40 1 0.01
42 5 0.05
43 4 0.04
45 1 0.01
46 1 0.01
47 27 0.28
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATATGTGT
Found at i:34758362 original size:68 final size:68
Alignment explanation
Indices: 34758276--34758409 Score: 182
Period size: 68 Copynumber: 2.0 Consensus size: 68
34758266 TAATTAAACT
* *
34758276 TAATTACTTTAATATTAAA-TAATATAATACTTATCAAGATAAATA-TTAGATTAAATATAATAT
1 TAATCACTTTAATATTAAATTAATAAAATAC-TATCAAGATAAATATTTA-ATTAAATATAATAT
34758339 TAAGA
64 TAAGA
* * * *
34758344 TAATCACTTTAATATTAAATTAATAAAATACTATTAAGATAAGTATTTAATTTAATTTAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATACTATCAAGATAAATATTTAATTAAATATAATATTA
34758409 A
66 A
34758410 ATCTATTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
68 45 0.78
69 13 0.22
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATACTATCAAGATAAATATTTAATTAAATATAATATTA
AGA
Found at i:34758833 original size:19 final size:19
Alignment explanation
Indices: 34758795--34758834 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
34758785 AAAATATCAT
*
34758795 ATTAATTTAATTTAATTTG
1 ATTAATTTAATTTAACTTG
*
34758814 ATTAATTTAATTTTACTTG
1 ATTAATTTAATTTAACTTG
34758833 AT
1 AT
34758835 CAAAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (19 bp):
ATTAATTTAATTTAACTTG
Found at i:34764881 original size:26 final size:27
Alignment explanation
Indices: 34764826--34764883 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
34764816 GTCATACATA
*
34764826 TCATAGGGGCATATTAGTCATTTTACC
1 TCATAAGGGCATATTAGTCATTTTACC
34764853 TCATAAGGGCATATTAGT-ATTTTACC
1 TCATAAGGGCATATTAGTCATTTTACC
34764879 TCATA
1 TCATA
34764884 GGAACATGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 13 0.43
27 17 0.57
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (27 bp):
TCATAAGGGCATATTAGTCATTTTACC
Found at i:34769650 original size:20 final size:20
Alignment explanation
Indices: 34769625--34769663 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
34769615 AGGGGCTATT
34769625 TTGTAAAGT-TGTAAAATAAG
1 TTGT-AAGTGTGTAAAATAAG
*
34769645 TTGTAAGTGTGTGAAATAA
1 TTGTAAGTGTGTAAAATAA
34769664 TTGAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGTAAGTGTGTAAAATAAG
Found at i:34771165 original size:115 final size:115
Alignment explanation
Indices: 34770963--34771193 Score: 417
Period size: 115 Copynumber: 2.0 Consensus size: 115
34770953 GATAGTTATC
*
34770963 ATTATATTGCACCAAAACAGTGTTGGACAGCAGCAGTTGTATAAATTTGAAAATCCACCAAAAAT
1 ATTATATTGCACCAAAACAGTGTTGGACAGCAGCAGTTGTATAAATTTCAAAATCCACCAAAAAT
34771028 TGTGGAAATTGAGTTAAAGGCTGAGTAAAATATGAAATTAAATATTAATG
66 TGTGGAAATTGAGTTAAAGGCTGAGTAAAATATGAAATTAAATATTAATG
* * *
34771078 ATTATATTGCACCAAAACAGTGTTGGACAGCAGTAGTTGTATGAATTTCAAAATCCATCAAAAAT
1 ATTATATTGCACCAAAACAGTGTTGGACAGCAGCAGTTGTATAAATTTCAAAATCCACCAAAAAT
*
34771143 TGTGGAAATTGAGTTAAAGGCTGTGTAAAATATGAAATTAAATATTAATG
66 TGTGGAAATTGAGTTAAAGGCTGAGTAAAATATGAAATTAAATATTAATG
34771193 A
1 A
34771194 GTGTAGTTTC
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (115 bp):
ATTATATTGCACCAAAACAGTGTTGGACAGCAGCAGTTGTATAAATTTCAAAATCCACCAAAAAT
TGTGGAAATTGAGTTAAAGGCTGAGTAAAATATGAAATTAAATATTAATG
Found at i:34771725 original size:38 final size:38
Alignment explanation
Indices: 34771683--34771758 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
34771673 GATAAATTGC
*
34771683 TTACTATTTTCATACGGTCTTACTAAGCTATAAAGCTT
1 TTACTATTTTCATACGGTCTTACTAAGCTAGAAAGCTT
*
34771721 TTACTGTTTTCATACGGTCTTACTAAGCTAGAAAGCTT
1 TTACTATTTTCATACGGTCTTACTAAGCTAGAAAGCTT
34771759 ACCCTATCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (38 bp):
TTACTATTTTCATACGGTCTTACTAAGCTAGAAAGCTT
Found at i:34775779 original size:46 final size:46
Alignment explanation
Indices: 34775729--34775904 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
34775719 TGATTGAGCA
34775729 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34775775 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34775820 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34775868 -CCTGAGCTCGTCGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34775905 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34775885 original size:93 final size:93
Alignment explanation
Indices: 34775726--34775897 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
34775716 GGATGATTGA
* *
34775726 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAGT
34775791 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34775819 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTCGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTCGAG
34775883 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
34775898 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34785187 original size:46 final size:46
Alignment explanation
Indices: 34785131--34785306 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
34785121 TGATTGAGCA
34785131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34785177 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34785222 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34785270 -CCTGAGCTCGTCGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34785307 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34785287 original size:93 final size:93
Alignment explanation
Indices: 34785128--34785299 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
34785118 GGATGATTGA
* *
34785128 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAGT
34785193 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34785221 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTCGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTCGAG
34785285 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
34785300 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34799569 original size:40 final size:40
Alignment explanation
Indices: 34799468--34799679 Score: 221
Period size: 40 Copynumber: 5.3 Consensus size: 40
34799458 TATTCGAATG
* * * *
34799468 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
34799509 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
34799549 ATATCCGGACCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
34799589 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACG
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * **
34799629 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
34799668 ATATCCGG-CTAA
1 ATATCCGGACTAA
34799680 ATCCCAAAGA
Statistics
Matches: 143, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 4 0.03
39 17 0.12
40 95 0.66
41 27 0.19
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:34802772 original size:510 final size:510
Alignment explanation
Indices: 34801808--34802827 Score: 1941
Period size: 510 Copynumber: 2.0 Consensus size: 510
34801798 GCTTAGCCGA
34801808 TACGCGCGAGAATGCATTTCTTCAGAGGCCGTGATGTGTAAACGTTTCCAGGATGGACTGAATGA
1 TACGCGCGAGAATGCATTTCTTCAGAGGCCGTGATGTGTAAACGTTTCCAGGATGGACTGAATGA
*
34801873 TGATATAAAGCTGTGTGTTGGCATTTTAGAAATCTGAGAATTTGTGGTACTCGTCGAGCGAGCTT
66 TGATATAAAGCTGTGTGTTGGCATTTTAGAAATCCGAGAATTTGTGGTACTCGTCGAGCGAGCTT
*
34801938 GCAAAGCCGAGGAGCTCAGTATGGATAAAAGAAAAGCTGATATGGGAGCAAAGGAGTTTCGTAAG
131 GCAAAGCCGAGGAGCTCAGTATGGAGAAAAGAAAAGCTGATATGGGAGCAAAGGAGTTTCGTAAG
34802003 AGGTCTTCGGGGAGGCCCTTTCAACAGTCATCGAAGAAATTTAGAGATGATTTAGGCCGATCTAG
196 AGGTCTTCGGGGAGGCCCTTTCAACAGTCATCGAAGAAATTTAGAGATGATTTAGGCCGATCTAG
*
34802068 AAACACTTTGGGCTTTTCTAGACGAGATCGCGATCGACCCCCTGTGAGTGCACGAGTCACTTCGG
261 AAACACTTCGGGCTTTTCTAGACGAGATCGCGATCGACCCCCTGTGAGTGCACGAGTCACTTCGG
*
34802133 TCGCCAGTGTTGGAACTGATCGTCGAGACAGAGCGGAGTGCCAGTATTGTGGTAAATGGCATTTG
326 TCGCCAGTGTTGGAACTGATCGTCGAGACAGAGCGGAGTGCCAGTATTGTGGTAAATGGCATTCG
34802198 GGGAGTTGTAGATTCCATGACAGCTCCTGTTACAAGTGCGGGTCAGTTGACCACTTTATTAAAGA
391 GGGAGTTGTAGATTCCATGACAGCTCCTGTTACAAGTGCGGGTCAGTTGACCACTTTATTAAAGA
* *
34802263 TTGCTCGAGGTTGTCTGAATAGAATGTAAATCAGAGTGGGAAACCGGGTGCTACC
456 TTGCCCGAGGTTGTCTGAATAGAATATAAATCAGAGTGGGAAACCGGGTGCTACC
* *
34802318 TACGTGCGAGAATGCATTTCTTCAGAGGCCGTGATGTGTAAACGTTTCGAGGATGGACTGAATGA
1 TACGCGCGAGAATGCATTTCTTCAGAGGCCGTGATGTGTAAACGTTTCCAGGATGGACTGAATGA
34802383 TGATATAAAGCTGTGTGTTGGCATTTTAGAAATCCGAGAATTTGTGGTACTCGTCGAGCGAGCTT
66 TGATATAAAGCTGTGTGTTGGCATTTTAGAAATCCGAGAATTTGTGGTACTCGTCGAGCGAGCTT
34802448 GCAAAGCCGAGGAGCTCAGTATGGAGAAAAGAAAAGCTGATATGGGAGCAAAGGAGTTTCGTAAG
131 GCAAAGCCGAGGAGCTCAGTATGGAGAAAAGAAAAGCTGATATGGGAGCAAAGGAGTTTCGTAAG
34802513 AGGTCTTCGGGGAGGCCCTTTCAACAGTCATCGAAGAAATTTAGAGATGATTTAGGCCGATCTAG
196 AGGTCTTCGGGGAGGCCCTTTCAACAGTCATCGAAGAAATTTAGAGATGATTTAGGCCGATCTAG
*
34802578 AAACACTTCGGGCTTTTCTAGACGAGATCGTGATCGACCCCCTGTGAGTGCACGAGTCACTTCGG
261 AAACACTTCGGGCTTTTCTAGACGAGATCGCGATCGACCCCCTGTGAGTGCACGAGTCACTTCGG
*
34802643 TCGCCAGTGTTGGAACTGATTGTCGAGACAGAGCGGAGTGCCAGTATTGTGGTAAATGGCATTCG
326 TCGCCAGTGTTGGAACTGATCGTCGAGACAGAGCGGAGTGCCAGTATTGTGGTAAATGGCATTCG
*
34802708 GGGAGTTGTAGATTCCATGACCGCTCCTGTTACAAGTGCGGGTCAGTTGACCACTTTATTAAAGA
391 GGGAGTTGTAGATTCCATGACAGCTCCTGTTACAAGTGCGGGTCAGTTGACCACTTTATTAAAGA
34802773 TTGCCCGAGGTTGTCTGAATAGAATATAAATCAGAGTGGGAAACCGGGTGCTACC
456 TTGCCCGAGGTTGTCTGAATAGAATATAAATCAGAGTGGGAAACCGGGTGCTACC
34802828 ACTGCTCGAG
Statistics
Matches: 499, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
510 499 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (510 bp):
TACGCGCGAGAATGCATTTCTTCAGAGGCCGTGATGTGTAAACGTTTCCAGGATGGACTGAATGA
TGATATAAAGCTGTGTGTTGGCATTTTAGAAATCCGAGAATTTGTGGTACTCGTCGAGCGAGCTT
GCAAAGCCGAGGAGCTCAGTATGGAGAAAAGAAAAGCTGATATGGGAGCAAAGGAGTTTCGTAAG
AGGTCTTCGGGGAGGCCCTTTCAACAGTCATCGAAGAAATTTAGAGATGATTTAGGCCGATCTAG
AAACACTTCGGGCTTTTCTAGACGAGATCGCGATCGACCCCCTGTGAGTGCACGAGTCACTTCGG
TCGCCAGTGTTGGAACTGATCGTCGAGACAGAGCGGAGTGCCAGTATTGTGGTAAATGGCATTCG
GGGAGTTGTAGATTCCATGACAGCTCCTGTTACAAGTGCGGGTCAGTTGACCACTTTATTAAAGA
TTGCCCGAGGTTGTCTGAATAGAATATAAATCAGAGTGGGAAACCGGGTGCTACC
Found at i:34808319 original size:40 final size:40
Alignment explanation
Indices: 34808215--34808411 Score: 216
Period size: 40 Copynumber: 4.9 Consensus size: 40
34808205 TATTCGAATG
* * *
34808215 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
** * * *
34808256 ATATCCGAACTAAGATCCAAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
34808296 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
34808336 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
*
34808376 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
34808412 GTTATATCTG
Statistics
Matches: 127, Mismatches: 29, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
39 9 0.07
40 92 0.72
41 26 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:34818364 original size:27 final size:27
Alignment explanation
Indices: 34818293--34818368 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
34818283 GTCATACATA
* **
34818293 TCATAGGGGCATATTAGTCATTTTACC
1 TCATAGAGGCATAACAGTCATTTTACC
*
34818320 TCATA-TGGCATAACAGTCATTTTACC
1 TCATAGAGGCATAACAGTCATTTTACC
34818346 TCATAGAGGCATAACAGTCATTT
1 TCATAGAGGCATAACAGTCATTT
34818369 CATCAAATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (27 bp):
TCATAGAGGCATAACAGTCATTTTACC
Found at i:34828236 original size:20 final size:18
Alignment explanation
Indices: 34828208--34828247 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
34828198 AATTCGGTTA
34828208 AATTATTATCGAAAATAATT
1 AATTATTAT-G-AAATAATT
*
34828228 AATTTTTATGAAATAATT
1 AATTATTATGAAATAATT
34828246 AA
1 AA
34828248 AGTGCACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 1 0.05
20 8 0.42
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (18 bp):
AATTATTATGAAATAATT
Found at i:34839391 original size:47 final size:47
Alignment explanation
Indices: 34839333--34839539 Score: 297
Period size: 47 Copynumber: 4.4 Consensus size: 47
34839323 CAGCCAAGAC
**
34839333 AGTGTATATATGTGATAAGGCCTAACAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
34839380 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
34839427 AGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
34839474 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
34839521 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
34839540 TCCCGAAGGG
Statistics
Matches: 143, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 143 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:34839714 original size:37 final size:37
Alignment explanation
Indices: 34839658--34839736 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
34839648 CCGAGCTCTA
** *
34839658 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAG-ATTATGTCCGGGT
*
34839695 AAGACCCGACAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
34839732 AAGAC
1 AAGAC
34839737 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (37 bp):
AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34841650 original size:43 final size:43
Alignment explanation
Indices: 34841602--34841747 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
34841592 TTGGTTTTCA
34841602 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34841645 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
34841688 GCACTAAGTGTGCAGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34841731 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
34841748 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:34841764 original size:29 final size:29
Alignment explanation
Indices: 34841729--34841802 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
34841719 GTTGTGAGAT
* *
34841729 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
34841758 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
34841787 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34841803 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:34842239 original size:40 final size:40
Alignment explanation
Indices: 34842192--34842348 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
34842182 GAGTTACTAA
*
34842192 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
34842232 ATACGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
34842272 ATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
34842312 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTAGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
34842349 CGTGTATTCG
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:34842250 original size:80 final size:80
Alignment explanation
Indices: 34842113--34842348 Score: 210
Period size: 80 Copynumber: 3.0 Consensus size: 80
34842103 TCGAATGATG
** * * * *
34842113 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATACGGGCTAA-ATCCCGAAGAGC
** *
34842174 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
* *
34842193 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATACGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATACGGGCTAAATCCCGAAGAGCATT
* **
34842258 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
* * * * * * *
34842273 TCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATACGGGCTAAATCCCGAAGAGCATT
*
34842338 CATGCTAGTGA
66 CATGCGAGTGA
34842349 CGTGTATTCG
Statistics
Matches: 129, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.01
80 104 0.81
81 18 0.14
82 6 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATACGGGCTAAATCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:34842328 original size:120 final size:120
Alignment explanation
Indices: 34842115--34842345 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
34842105 GAATGATGTC
** *
34842115 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTGGT
1 CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
* * *
34842180 GCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATA
66 GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTATA
** * * *
34842235 CGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCTGAAGAGCATT
1 CGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATT
* * *
34842298 CGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGCAATCATGCTAG
63 CGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAG
34842346 TGACGTGTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
120 68 0.72
121 20 0.21
122 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTATA
Found at i:34842540 original size:25 final size:25
Alignment explanation
Indices: 34842511--34842562 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
34842501 TGTGTATTAA
34842511 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* * *
34842536 TGAATAATTAGAGGCACTGTGTGTG
1 TGAATAATAAGAGGCACTATGTATG
34842561 TG
1 TG
34842563 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:34845924 original size:47 final size:47
Alignment explanation
Indices: 34845866--34846072 Score: 306
Period size: 47 Copynumber: 4.4 Consensus size: 47
34845856 CAGCCAAGAC
* *
34845866 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
* *
34845913 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
34845960 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
* * * * * *
34846007 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
* *
34846054 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
34846073 TCCCGAAGGG
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
Found at i:34846247 original size:37 final size:37
Alignment explanation
Indices: 34846194--34846269 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
34846184 AGCTCTAAAT
* *
34846194 ACCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAAG
*
34846231 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
34846268 AC
1 AC
34846270 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 34 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:34854995 original size:40 final size:40
Alignment explanation
Indices: 34854951--34855039 Score: 178
Period size: 40 Copynumber: 2.2 Consensus size: 40
34854941 TTTATTCTCA
34854951 ACTATTAAATATATTTTTCAGAACAACAATTCTACTAGGT
1 ACTATTAAATATATTTTTCAGAACAACAATTCTACTAGGT
34854991 ACTATTAAATATATTTTTCAGAACAACAATTCTACTAGGT
1 ACTATTAAATATATTTTTCAGAACAACAATTCTACTAGGT
34855031 ACTATTAAA
1 ACTATTAAA
34855040 GAAGAGAGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.37
Consensus pattern (40 bp):
ACTATTAAATATATTTTTCAGAACAACAATTCTACTAGGT
Found at i:34856190 original size:21 final size:21
Alignment explanation
Indices: 34856149--34856192 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
34856139 AAAATTGTCA
*
34856149 TAGCATGTAACAACCTAGTTT
1 TAGCATGTAACAACCCAGTTT
*
34856170 TAGCATGTAACAACCCGGTTT
1 TAGCATGTAACAACCCAGTTT
34856191 TA
1 TA
34856193 ACAAATCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (21 bp):
TAGCATGTAACAACCCAGTTT
Found at i:34858104 original size:40 final size:40
Alignment explanation
Indices: 34858074--34858283 Score: 278
Period size: 40 Copynumber: 5.3 Consensus size: 40
34858064 GGACTAAGAT
* * * *
34858074 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
34858114 CCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
34858154 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * *
34858194 CCGAAGGCATTCATGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * * * *
34858234 CCGAAAGCATT-GTGTGAGTTACTAAAACCGAGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
34858273 CCGAAGGCATT
1 CCGAAGGCATT
34858284 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 31 0.20
40 121 0.80
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:34858158 original size:80 final size:80
Alignment explanation
Indices: 34858021--34858283 Score: 280
Period size: 80 Copynumber: 3.3 Consensus size: 80
34858011 ATGAATGCTG
* * * * * **
34858021 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTG-TGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
34858084 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
34858101 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
34858166 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * * * * *
34858181 TCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAATCCGGGTTATGTCCCGAAAG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
34858245 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* * *
34858260 ACCGAGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34858284 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 35 0.23
80 115 0.74
81 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:34860592 original size:43 final size:41
Alignment explanation
Indices: 34860491--34860620 Score: 136
Period size: 43 Copynumber: 3.1 Consensus size: 41
34860481 GGTTATCGAG
* *
34860491 ATGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTG-T
* * *
34860534 AAT-TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTGAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTG-T
* * *
34860577 ATGTGATAACATGTAAGACCATATCTGGGATATGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGT
34860618 ATG
1 ATG
34860621 AGCTTTTGTG
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 4 0.06
42 10 0.14
43 56 0.78
44 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (41 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGT
Found at i:34866279 original size:12 final size:12
Alignment explanation
Indices: 34866262--34866287 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34866252 CATTCCGAAG
34866262 TATATATATACA
1 TATATATATACA
34866274 TATATATATACA
1 TATATATATACA
34866286 TA
1 TA
34866288 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:34866801 original size:27 final size:27
Alignment explanation
Indices: 34866770--34866943 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
34866760 TAAATTGTAC
34866770 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34866797 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34866823 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34866851 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34866879 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34866906 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34866933 AGCACTGAGTG
1 AGCACTAAGTG
34866944 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34866884 original size:82 final size:81
Alignment explanation
Indices: 34866771--34866926 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34866761 AAATTGTACA
* *
34866771 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34866835 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34866852 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34866917 TGCGAGTTGA
65 TGCGAATTGA
34866927 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34883421 original size:12 final size:12
Alignment explanation
Indices: 34883404--34883429 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34883394 CATTCCGAAG
34883404 TATATATATACA
1 TATATATATACA
34883416 TATATATATACA
1 TATATATATACA
34883428 TA
1 TA
34883430 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:34883938 original size:27 final size:27
Alignment explanation
Indices: 34883907--34884084 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34883897 TAAATTGTAC
34883907 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34883934 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34883960 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34883988 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34884016 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34884043 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34884070 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34884085 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34884021 original size:82 final size:81
Alignment explanation
Indices: 34883908--34884063 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34883898 AAATTGTACA
* *
34883908 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34883972 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34883989 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34884054 TGCGAGTTGA
65 TGCGAATTGA
34884064 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34884075 original size:82 final size:81
Alignment explanation
Indices: 34883904--34884084 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34883894 GATTAAATTG
* *
34883904 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34883969 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34883985 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34884049 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34884067 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34884085 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34891516 original size:12 final size:12
Alignment explanation
Indices: 34891499--34891524 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34891489 CATTCCGAAG
34891499 TATATATATACA
1 TATATATATACA
34891511 TATATATATACA
1 TATATATATACA
34891523 TA
1 TA
34891525 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:34892038 original size:27 final size:27
Alignment explanation
Indices: 34892007--34892182 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
34891997 TAAATTGTAC
*
34892007 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34892034 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34892060 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34892088 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34892116 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34892143 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34892170 AGCACTGAGTGTG
1 AGCACTAAGTGTG
34892183 TGGACTCAAT
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34892121 original size:82 final size:81
Alignment explanation
Indices: 34892008--34892163 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
34891998 AAATTGTACA
* * *
34892008 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34892072 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34892089 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34892154 TGCGAGTTGA
65 TGCGAATTGA
34892164 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34892175 original size:82 final size:81
Alignment explanation
Indices: 34892004--34892182 Score: 216
Period size: 82 Copynumber: 2.2 Consensus size: 81
34891994 GATTAAATTG
* * *
34892004 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34892069 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34892085 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34892149 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34892167 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
34892183 TGGACTCAAT
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34895101 original size:23 final size:24
Alignment explanation
Indices: 34895044--34895109 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 24
34895034 GTCATGTTCG
*
34895044 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGCTGA-AAACA
* *
34895070 ATAAACTCTATTGAGCTG-AAACA
1 GTAAGCTCTATTGAGCTGAAAACA
34895093 GTAAGCTCT-TATGAGCT
1 GTAAGCTCTAT-TGAGCT
34895110 ATGGTGAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 1 0.03
23 18 0.53
25 9 0.26
26 6 0.18
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (24 bp):
GTAAGCTCTATTGAGCTGAAAACA
Found at i:34899457 original size:5 final size:5
Alignment explanation
Indices: 34899447--34899472 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
34899437 CAGTCTAATT
34899447 TATCA TATCA TATCA TATCA TATCA T
1 TATCA TATCA TATCA TATCA TATCA T
34899473 TTCCATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TATCA
Found at i:34931873 original size:17 final size:17
Alignment explanation
Indices: 34931851--34931888 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
34931841 ATCAAAGGAT
34931851 ATAAACTTAAT-CTTAAC
1 ATAAACTTAATGC-TAAC
*
34931868 ATAAACTTTATGCTAAC
1 ATAAACTTAATGCTAAC
34931885 ATAA
1 ATAA
34931889 TTCCAAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (17 bp):
ATAAACTTAATGCTAAC
Found at i:34943473 original size:51 final size:51
Alignment explanation
Indices: 34943405--34943502 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
34943395 TGTTTGATTG
34943405 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGA-AAACGCATGTTTTTA
1 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAA-GCATGTTTTTA
34943456 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAAGCATGTT
1 AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAAGCATGTT
34943503 AATGTTAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 43 0.93
52 3 0.07
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34
Consensus pattern (51 bp):
AGTGTATGTGTATAGGTAAAATTGCCAAATTGATGAGAAAGCATGTTTTTA
Found at i:34947241 original size:16 final size:16
Alignment explanation
Indices: 34947220--34947252 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34947210 TAACCTTGTT
*
34947220 TTTCCCCCGATCTAAA
1 TTTCCCCCAATCTAAA
34947236 TTTCCCCCAATCTAAA
1 TTTCCCCCAATCTAAA
34947252 T
1 T
34947253 CTGAATTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.36, G:0.03, T:0.33
Consensus pattern (16 bp):
TTTCCCCCAATCTAAA
Found at i:34951114 original size:13 final size:13
Alignment explanation
Indices: 34951096--34951134 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
34951086 ATTCATTTTG
*
34951096 AGGCACACGGCCA
1 AGGCACACGCCCA
34951109 AGGCACACGCCCA
1 AGGCACACGCCCA
34951122 AGGCACACGCCCA
1 AGGCACACGCCCA
34951135 TGTGCTAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.44, G:0.26, T:0.00
Consensus pattern (13 bp):
AGGCACACGCCCA
Found at i:34954423 original size:43 final size:43
Alignment explanation
Indices: 34954366--34954452 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
34954356 GGCTTGACTC
34954366 ATAAATCATCTATTATCCATTCATTTATTAAATCCAAATTCAT
1 ATAAATCATCTATTATCCATTCATTTATTAAATCCAAATTCAT
34954409 ATAAATCATCTATTATCCATTCATTTATTAAATCCAAATTCAT
1 ATAAATCATCTATTATCCATTCATTTATTAAATCCAAATTCAT
34954452 A
1 A
34954453 CTTTTTATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.18, G:0.00, T:0.41
Consensus pattern (43 bp):
ATAAATCATCTATTATCCATTCATTTATTAAATCCAAATTCAT
Found at i:34955552 original size:43 final size:43
Alignment explanation
Indices: 34955382--34955552 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
34955372 ATAAAGCTCG
* * * * *
34955382 TACAATGCC-ATATCCTAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* ** * * *
34955423 TATCGATATCACTGTCCCAGACAGGGTCTTACACGAAATCA-AA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* *
34955466 TAACGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
**
34955510 TACAATGCCAATGTCCCAGACATGGTCTTACTTGTAATCACAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
34955553 CTCGATAATC
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 94 0.90
44 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
Found at i:34961292 original size:23 final size:23
Alignment explanation
Indices: 34961266--34961312 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
34961256 ACACAAAGTA
*
34961266 AGCTTTCAAAAGCTTAGTATGCC
1 AGCTTTCAAAAGCTTAGTAAGCC
34961289 AGCTTTCAAAAGCTTAGTAAGCC
1 AGCTTTCAAAAGCTTAGTAAGCC
34961312 A
1 A
34961313 TATACAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (23 bp):
AGCTTTCAAAAGCTTAGTAAGCC
Found at i:34961649 original size:43 final size:42
Alignment explanation
Indices: 34961601--34961705 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 42
34961591 AAAGCCAATA
* * *
34961601 TCCCAGACGTGGTCTTACATGTAATCAAATATCAATGCC-ACTT
1 TCCCAGACGTGGTCTTACACGAAATCAAATA-CAATGCCGA-TG
* *
34961644 TCCCAGATAG-GGTCTTACACGAAATCAAATACGATGCCGATG
1 TCCCAGA-CGTGGTCTTACACGAAATCAAATACAATGCCGATG
* *
34961686 TCCAAGACATGGTCTTACAC
1 TCCCAGACGTGGTCTTACAC
34961706 ATAGATCTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
42 23 0.45
43 27 0.53
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACACGAAATCAAATACAATGCCGATG
Found at i:34961701 original size:42 final size:43
Alignment explanation
Indices: 34961605--34961705 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
34961595 CCAATATCCC
* * * * *
34961605 AGACGTGGTCTTACATGTAATCAAATATCAATGCCACTTTCCC
1 AGACATGGTCTTACACGAAATCAAATATCAATGCCACTGTCCA
* * *
34961648 AGATAGGGTCTTACACGAAATCAAATA-CGATGCCGA-TGTCCA
1 AGACATGGTCTTACACGAAATCAAATATCAATGCC-ACTGTCCA
34961690 AGACATGGTCTTACAC
1 AGACATGGTCTTACAC
34961706 ATAGATCTCA
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 24 0.51
43 23 0.49
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
AGACATGGTCTTACACGAAATCAAATATCAATGCCACTGTCCA
Found at i:34964265 original size:47 final size:47
Alignment explanation
Indices: 34964199--34964624 Score: 701
Period size: 47 Copynumber: 9.1 Consensus size: 47
34964189 GAAATGATAG
34964199 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34964246 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
34964293 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34964340 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34964387 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
34964434 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34964481 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34964528 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
34964574 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34964621 TAAG
1 TAAG
34964625 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 40 0.11
47 321 0.89
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:34964812 original size:37 final size:37
Alignment explanation
Indices: 34964743--34964821 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
34964733 CCGAGCTCTA
* *
34964743 AAGACCCGATGACTACGTCTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTCTGGGAATTATGTCCGGGT
* *
34964780 AAGACCCGATAACTTCGTGT-GGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTCTGGGA-ATTATGTCCGGGT
34964817 AAGAC
1 AAGAC
34964822 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 3 0.08
37 34 0.92
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTCTGGGAATTATGTCCGGGT
Found at i:34989261 original size:21 final size:21
Alignment explanation
Indices: 34989231--34989276 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
34989221 GTGTTTTATG
34989231 ATAT-AATATGAGGTTTTAAA
1 ATATGAATATGAGGTTTTAAA
34989251 ATATGAATATGAGGTTTTAAA
1 ATATGAATATGAGGTTTTAAA
*
34989272 TTATG
1 ATATG
34989277 TTAGGCAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (21 bp):
ATATGAATATGAGGTTTTAAA
Found at i:34992223 original size:40 final size:40
Alignment explanation
Indices: 34992154--34992357 Score: 263
Period size: 40 Copynumber: 5.2 Consensus size: 40
34992144 CGGATGATAA
* *
34992154 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
34992194 CGAAGGCATTTGTGCGAGTTACTATTTCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
34992234 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
34992274 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
34992313 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
34992352 CGAAGG
1 CGAAGG
34992358 TACTTGGTTT
Statistics
Matches: 146, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 5 0.03
39 35 0.24
40 106 0.73
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:34993786 original size:49 final size:49
Alignment explanation
Indices: 34993730--34993858 Score: 222
Period size: 49 Copynumber: 2.6 Consensus size: 49
34993720 AAAACTGTGA
34993730 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGG
*
34993779 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGG
* * *
34993828 TCGCATGTGTAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
34993859 TGCGTACCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGG
Found at i:34996933 original size:14 final size:15
Alignment explanation
Indices: 34996867--34996933 Score: 75
Period size: 15 Copynumber: 4.5 Consensus size: 15
34996857 TCGTATCTTA
*
34996867 GGTTTCTTTACTCTG
1 GGTTTCTTTATTCTG
34996882 GGTTTCTTTATTCTG
1 GGTTTCTTTATTCTG
*
34996897 GGTTTCTCTA-TCTTG
1 GGTTTCTTTATTC-TG
*
34996912 GATTTCTTTATTC-G
1 GGTTTCTTTATTCTG
*
34996926 GTTTTCTT
1 GGTTTCTT
34996934 ATTATCTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
14 10 0.22
15 33 0.73
16 2 0.04
ACGTcount: A:0.07, C:0.16, G:0.18, T:0.58
Consensus pattern (15 bp):
GGTTTCTTTATTCTG
Found at i:34999137 original size:37 final size:37
Alignment explanation
Indices: 34999091--34999165 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
34999081 AAAAACTGTG
*
34999091 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGT
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGT
*
34999128 ATCAGGTGTGTAGTACTAAGTGCAGGCTACTACATGT
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGT
34999165 A
1 A
34999166 CCGGATAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (37 bp):
ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGT
Found at i:34999190 original size:49 final size:49
Alignment explanation
Indices: 34999133--34999257 Score: 196
Period size: 49 Copynumber: 2.6 Consensus size: 49
34999123 CGTGTATCAG
*
34999133 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTTAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCAC
** *
34999182 GTGTGTAGTACTAAGTGCAGGCTACTAGGTGTACCGGATAATTGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCAC
* *
34999231 ATGTGTAGTACTATGTGCAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
34999258 TGCGTACCAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCAC
Found at i:35003669 original size:47 final size:47
Alignment explanation
Indices: 35003610--35003909 Score: 433
Period size: 47 Copynumber: 6.4 Consensus size: 47
35003600 GATGTACAAG
* *
35003610 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
35003657 GTGTATATATGTGATAAGG-TTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
35003704 GTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
* * * *
35003751 GTGTGTATATGAGATAAGACTTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
35003798 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
35003845 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
35003892 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
35003910 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 230 0.99
48 1 0.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:35003680 original size:25 final size:24
Alignment explanation
Indices: 35003640--35003727 Score: 74
Period size: 25 Copynumber: 3.6 Consensus size: 24
35003630 CTAATGGCCG
*
35003640 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAT-AAGGTGAAAGTGTATAT
***
35003665 ATGTGATAAGGTTG-AA-TGGCCA-
1 ATGTGATAAGG-TGAAAGTGTATAT
*
35003687 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAT-AAGGTGAAAGTGTATAT
35003712 ATGTGATAAGGCTGAA
1 ATGTGATAAGG-TGAA
35003728 TGGCCAATGT
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
22 9 0.19
23 8 0.17
24 11 0.23
25 20 0.42
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.32
Consensus pattern (24 bp):
ATGTGATAAGGTGAAAGTGTATAT
Found at i:35003693 original size:22 final size:21
Alignment explanation
Indices: 35003665--35003749 Score: 62
Period size: 22 Copynumber: 3.7 Consensus size: 21
35003655 AAGTGTATAT
35003665 ATGTGATAAGGTTGAATGGCCA
1 ATGTGATAAGG-TGAATGGCCA
* ***
35003687 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGTG-AA-TGGCCA
35003711 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGG-TGAATGGCCA
*
35003734 ATGTGATGAATGTGAA
1 ATGTGAT-AAGGTGAA
35003750 AGTGTGTATA
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
22 20 0.42
23 11 0.23
24 8 0.17
25 9 0.19
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.29
Consensus pattern (21 bp):
ATGTGATAAGGTGAATGGCCA
Found at i:35010367 original size:19 final size:19
Alignment explanation
Indices: 35010343--35010379 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
35010333 GACCCTATTT
35010343 TGTTGAACG-ATTTTCTAAG
1 TGTTGAA-GAATTTTCTAAG
35010362 TGTTGAAGAATTTTCTAA
1 TGTTGAAGAATTTTCTAA
35010380 AGTACTCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (19 bp):
TGTTGAAGAATTTTCTAAG
Found at i:35013458 original size:16 final size:16
Alignment explanation
Indices: 35013437--35013469 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
35013427 CCAAGTTCCA
*
35013437 AGAGTAAGTCTTTTCT
1 AGAGTAAGTCTTATCT
35013453 AGAGTAAGTCTTATCT
1 AGAGTAAGTCTTATCT
35013469 A
1 A
35013470 AACCCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (16 bp):
AGAGTAAGTCTTATCT
Found at i:35017287 original size:42 final size:41
Alignment explanation
Indices: 35017179--35017287 Score: 119
Period size: 43 Copynumber: 2.6 Consensus size: 41
35017169 GTACCAATGT
* ** *
35017179 CATATCCCAAATATGGTCTTACATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACA-CAAATCTCATATCGATGC
* * *
35017221 CAATAGCCCAGCTATGGTTTTACACAAAGTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACAAA-TCTCATATCGATGC
*
35017264 CATATCCTAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
35017288 GTAATATCAG
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 22 0.41
43 32 0.59
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACACAAATCTCATATCGATGC
Found at i:35024503 original size:46 final size:46
Alignment explanation
Indices: 35024453--35024628 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
35024443 TGGTTGAGCA
*
35024453 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
35024499 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
35024546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
35024592 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35024629 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:35024609 original size:93 final size:93
Alignment explanation
Indices: 35024450--35024621 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
35024440 GGATGGTTGA
* * * *
35024450 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
35024515 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
35024543 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
35024608 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
35024622 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:35027289 original size:23 final size:23
Alignment explanation
Indices: 35027240--35027289 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
35027230 AAGAGACCTT
** *
35027240 AATTAGTTGTATTTTTTTACGAG
1 AATTAGTTGTATTTTTTTAAAAA
35027263 AATTA-TTGATATTTTTTTAAAAA
1 AATTAGTTG-TATTTTTTTAAAAA
35027286 AATT
1 AATT
35027290 GTGGGCTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (23 bp):
AATTAGTTGTATTTTTTTAAAAA
Found at i:35027677 original size:7 final size:7
Alignment explanation
Indices: 35027658--35027708 Score: 72
Period size: 7 Copynumber: 7.7 Consensus size: 7
35027648 GTTTTTTATT
35027658 GGTTTAG
1 GGTTTAG
35027665 GG-TTAG
1 GGTTTAG
35027671 GGTTTA-
1 GGTTTAG
35027677 GGTTTAG
1 GGTTTAG
*
35027684 GGTTTAA
1 GGTTTAG
35027691 GGTTTA-
1 GGTTTAG
35027697 GGTTTAG
1 GGTTTAG
35027704 GGTTT
1 GGTTT
35027709 TAAGAGTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
6 18 0.45
7 22 0.55
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:35027708 original size:13 final size:13
Alignment explanation
Indices: 35027658--35027704 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
35027648 GTTTTTTATT
*
35027658 GGTTTAGGGTTAG
1 GGTTTAGGTTTAG
35027671 GGTTTAGGTTTAG
1 GGTTTAGGTTTAG
35027684 GGTTTAAGGTTTA-
1 GGTTT-AGGTTTAG
35027697 GGTTTAGG
1 GGTTTAGG
35027705 GTTTTAAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 3 0.09
13 22 0.69
14 7 0.22
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (13 bp):
GGTTTAGGTTTAG
Found at i:35027807 original size:56 final size:55
Alignment explanation
Indices: 35027740--35027890 Score: 149
Period size: 65 Copynumber: 2.5 Consensus size: 55
35027730 TTTTTAAGGG
* * *
35027740 AAAAATTAATTAACTTAGGGTTGAGGGTTAATTAATTAAGTTAACTATTAATTTTA
1 AAAAATCAATTAAATTAGGGTTGAGGGTTAATTAATTAAATTAACTATTAA-TTTA
* *
35027796 AAAAATCAATTAAATTAGGGTTTAGGATTTTTAAGGTTTATTAATTAAATTAACTATTAATTTA
1 AAAAATCAATTAAATTAGGG-TT--G------AGGGTTAATTAATTAAATTAACTATTAATTTA
*
35027860 AAAGAATCAATTAAATTAGGGTTTAGGGTTA
1 AAA-AATCAATTAAATTAGGGTTGAGGGTTA
35027891 TTAGAGTTAA
Statistics
Matches: 77, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
56 23 0.30
57 2 0.03
59 1 0.01
64 9 0.12
65 42 0.55
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (55 bp):
AAAAATCAATTAAATTAGGGTTGAGGGTTAATTAATTAAATTAACTATTAATTTA
Found at i:35027840 original size:65 final size:64
Alignment explanation
Indices: 35027765--35027936 Score: 247
Period size: 65 Copynumber: 2.6 Consensus size: 64
35027755 TAGGGTTGAG
* *
35027765 GGTTAATTAATTAAGTTAACTATTAATTTTAAAAAATCAATTAAATTAGGGTTTAGGATTTTTAA
1 GGTTAATTAATTAAATTAACTATTAATTTTAAAAAATCAATTAAATTAGGGTTTAGGATTATT-A
* *
35027830 GGTTTATTAATTAAATTAACTATTAA-TTTAAAAGAATCAATTAAATTAGGGTTTAGGGTTATTA
1 GGTTAATTAATTAAATTAACTATTAATTTTAAAA-AATCAATTAAATTAGGGTTTAGGATTATTA
**
35027894 GAGTTAATTAAATTAAATTAACTATTAATTCAAAAAAATCAAT
1 G-GTTAATT-AATTAAATTAACTATTAATTTTAAAAAATCAAT
35027937 ATATAATTTT
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
64 9 0.09
65 57 0.59
66 25 0.26
67 5 0.05
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (64 bp):
GGTTAATTAATTAAATTAACTATTAATTTTAAAAAATCAATTAAATTAGGGTTTAGGATTATTA
Found at i:35028111 original size:126 final size:126
Alignment explanation
Indices: 35027966--35028221 Score: 404
Period size: 126 Copynumber: 2.0 Consensus size: 126
35027956 TTTGCTGCAA
* * *
35027966 TAGTATTAGAGAAACTAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGT
1 TAGTATTAGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGC
* *
35028031 AGGATGCACTGTCAACAAATTTACGAAAAAAAGCTCCCACGTGGACACTCTTTTACTACAG
66 AGGATGCACTATCAACAAAATTACGAAAAAAAGCTCCCACGTGGACACTCTTTTACTACAG
* * *
35028092 TAGTATTTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
1 TAGTATTAGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGC
* * * *
35028157 AGGATGCACTATCAGCAAAATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAG
66 AGGATGCACTATCAACAAAATTACGAAAAAAAGCTCCCACGTGGACACTCTTTTACTACAG
35028218 TAGT
1 TAGT
35028222 TACTATTTGG
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 118 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (126 bp):
TAGTATTAGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGC
AGGATGCACTATCAACAAAATTACGAAAAAAAGCTCCCACGTGGACACTCTTTTACTACAG
Found at i:35032450 original size:45 final size:45
Alignment explanation
Indices: 35032352--35032558 Score: 287
Period size: 45 Copynumber: 4.6 Consensus size: 45
35032342 CCGACATTTC
* *
35032352 GCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCA-CTGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCATC-GGCATTATA
* *
35032395 GCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCATCGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGCATTATA
* *
35032440 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGCATTATA
* *
35032485 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCATTGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGCATTATA
*
35032530 GCCTGCTAGGATCAAAGGCCCGAATAGTA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
35032559 CTGTACGATA
Statistics
Matches: 151, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
43 16 0.11
44 5 0.03
45 128 0.85
46 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGCATTATA
Found at i:35033376 original size:25 final size:25
Alignment explanation
Indices: 35033354--35033409 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
35033344 ATAATAAGGG
35033354 CAAATTTAACCAGAATTATTAAGAA
1 CAAATTTAACCAGAATTATTAAGAA
*
35033379 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCAGAATTATTAAGAA
35033404 CAAATT
1 CAAATT
35033410 AACAAGCTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (25 bp):
CAAATTTAACCAGAATTATTAAGAA
Found at i:35034149 original size:68 final size:68
Alignment explanation
Indices: 35034077--35034216 Score: 271
Period size: 68 Copynumber: 2.1 Consensus size: 68
35034067 ATTTAACACC
*
35034077 ATAAATTATTTGGCCACTACAAAATTAACCTATCACATTTTCAAAAATTTTCACACAAGTCCTAT
1 ATAAATTATTTGGCCACTACAAAATTAACATATCACATTTTCAAAAATTTTCACACAAGTCCTAT
35034142 TTA
66 TTA
35034145 ATAAATTATTTGGCCACTACAAAATTAACATATCACATTTTCAAAAATTTTCACACAAGTCCTAT
1 ATAAATTATTTGGCCACTACAAAATTAACATATCACATTTTCAAAAATTTTCACACAAGTCCTAT
35034210 TTA
66 TTA
35034213 ATAA
1 ATAA
35034217 TTTCACTCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 71 1.00
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.35
Consensus pattern (68 bp):
ATAAATTATTTGGCCACTACAAAATTAACATATCACATTTTCAAAAATTTTCACACAAGTCCTAT
TTA
Found at i:35034728 original size:30 final size:30
Alignment explanation
Indices: 35034694--35034761 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
35034684 GTTGAAGTGT
* *
35034694 TGGGCCCGATGATTGTATGGGCGCTGTTGA
1 TGGGCCCGATGACTGTATGGGCACTGTTGA
* *
35034724 TGGGCCTGATGACTGTATGGGTACTGTTGA
1 TGGGCCCGATGACTGTATGGGCACTGTTGA
35034754 TGGGCCCG
1 TGGGCCCG
35034762 CGTCGCCATC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.13, C:0.18, G:0.40, T:0.29
Consensus pattern (30 bp):
TGGGCCCGATGACTGTATGGGCACTGTTGA
Found at i:35036481 original size:9 final size:10
Alignment explanation
Indices: 35036454--35036493 Score: 53
Period size: 11 Copynumber: 3.7 Consensus size: 10
35036444 TCGACAAAAA
35036454 TTGAGAGAAAT
1 TTGAGAG-AAT
35036465 TTGAGAGAAT
1 TTGAGAGAAT
35036475 TTGGAGAGAAT
1 TT-GAGAGAAT
35036486 TGTGAGAG
1 T-TGAGAG
35036494 GACTATTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.19
11 21 0.78
12 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.28
Consensus pattern (10 bp):
TTGAGAGAAT
Found at i:35037329 original size:19 final size:20
Alignment explanation
Indices: 35037301--35037340 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
35037291 TTTGGAAGGT
*
35037301 TTTGGATAAAA-ATATTAAG
1 TTTGGATAAAATATATCAAG
*
35037320 TTTGGTTAAAATATATCAAG
1 TTTGGATAAAATATATCAAG
35037340 T
1 T
35037341 ATGTGAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (20 bp):
TTTGGATAAAATATATCAAG
Found at i:35038073 original size:15 final size:16
Alignment explanation
Indices: 35038055--35038088 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
35038045 GTTCAATAAT
35038055 TTTTTAA-ATAAAATA
1 TTTTTAACATAAAATA
35038070 TTTTTAACATAAAATA
1 TTTTTAACATAAAATA
35038086 TTT
1 TTT
35038089 CTTTCCACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTTTAACATAAAATA
Found at i:35041303 original size:21 final size:22
Alignment explanation
Indices: 35041257--35041303 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
35041247 TTGCAGATAT
* *
35041257 TAAAATCTGAATTCAAATATAC
1 TAAAATATGAATTCAAATAAAC
*
35041279 TAAAATATGAATT-AATTAAAC
1 TAAAATATGAATTCAAATAAAC
35041300 TAAA
1 TAAA
35041304 CATAATTACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (22 bp):
TAAAATATGAATTCAAATAAAC
Found at i:35047025 original size:27 final size:27
Alignment explanation
Indices: 35046995--35047145 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
35046985 ATATTGAGCC
* *
35046995 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
35047022 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
35047049 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** *** *
35047077 CGCACACTTAGTGCCGCATGGCCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
35047104 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
35047131 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35047146 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
27 82 0.79
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:35047107 original size:55 final size:54
Alignment explanation
Indices: 35046995--35047144 Score: 158
Period size: 55 Copynumber: 2.8 Consensus size: 54
35046985 ATATTGAGCC
* * * * *
35046995 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAACCAAAT
* * ** *
35047049 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGCCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAACCAAAT
* **
35047104 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGC
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGC
35047145 TGTACAATTT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 37 0.46
55 44 0.54
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAACCAAAT
Found at i:35055099 original size:27 final size:27
Alignment explanation
Indices: 35055060--35055237 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
35055050 ATATTGAGCC
* *
35055060 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
35055087 AGCATACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
35055114 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
35055142 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
35055169 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
35055196 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
35055223 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35055238 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:35055220 original size:54 final size:55
Alignment explanation
Indices: 35055060--35055237 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
35055050 ATATTGAGCC
* * * * * * * *
35055060 CGCACACTCAGTGCTATATAATC-AACTAGCATACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
35055114 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
35055169 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
35055223 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35055238 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
54 60 0.58
55 43 0.42
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:35077261 original size:27 final size:27
Alignment explanation
Indices: 35077227--35077377 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
35077217 TAAATTGTAC
* *
35077227 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
35077253 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
35077281 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
35077309 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
35077336 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
35077363 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35077378 GGCTCAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Done.