Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 110 of 373
Found at i:36146354 original size:20 final size:19
Alignment explanation
Indices: 36146329--36146391 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
36146319 TTGTACGGGA
36146329 TTTGCACTTTGGTGCCTCTG
1 TTTGCACTTT-GTGCCTCTG
36146349 TTTGCACATTTGTGTCCT-TG
1 TTTGCAC-TTTGTG-CCTCTG
* * *
36146369 TCTGTACTTCAGTGCCTCTG
1 TTTGCACTT-TGTGCCTCTG
36146389 TTT
1 TTT
36146392 TGCATCGGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 5 0.14
20 24 0.69
21 6 0.17
ACGTcount: A:0.08, C:0.24, G:0.21, T:0.48
Consensus pattern (19 bp):
TTTGCACTTTGTGCCTCTG
Found at i:36147084 original size:17 final size:17
Alignment explanation
Indices: 36147062--36147095 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36147052 TTTCTAGAGG
36147062 TTACATGCATGCATTTA
1 TTACATGCATGCATTTA
36147079 TTACATGCATGCATTTA
1 TTACATGCATGCATTTA
36147096 AAATAATCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
TTACATGCATGCATTTA
Found at i:36150747 original size:40 final size:40
Alignment explanation
Indices: 36150703--36150930 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
36150693 GCTACTTGCT
*
36150703 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
36150743 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
36150783 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
36150823 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
36150863 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
36150902 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
36150931 CATCCGAATA
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.18
40 140 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:36150802 original size:80 final size:80
Alignment explanation
Indices: 36150670--36150926 Score: 378
Period size: 80 Copynumber: 3.2 Consensus size: 80
36150660 AAACCAAGTA
* * * *
36150670 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
36150733 GTAACTCGTACAAATG
65 GTAACTCGCACAAATG
36150749 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
36150814 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* *
36150829 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
36150892 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
*
36150908 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36150927 TTATCATCCG
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 56 0.34
80 108 0.65
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:36159733 original size:39 final size:40
Alignment explanation
Indices: 36159688--36159859 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
36159678 GCTCCTCGTT
* * *
36159688 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36159728 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
36159767 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36159807 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
36159847 CAAATGCCTTCGG
1 CAAATGCCTTCGG
36159860 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36159788 original size:40 final size:39
Alignment explanation
Indices: 36159690--36159912 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
36159680 TCCTCGTTCA
* * * *
36159690 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
36159729 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36159768 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
36159808 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
36159848 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
36159889 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36159913 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:36159872 original size:80 final size:79
Alignment explanation
Indices: 36159688--36159912 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
36159678 GCTCCTCGTT
* * * * *
36159688 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
36159752 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
36159767 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
36159832 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
36159847 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
36159911 GA
63 GA
36159913 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:36159921 original size:41 final size:41
Alignment explanation
Indices: 36159844--36159921 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36159834 TTTGTATCTC
* * *
36159844 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36159885 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36159922 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36167722 original size:40 final size:40
Alignment explanation
Indices: 36167622--36167791 Score: 209
Period size: 40 Copynumber: 4.3 Consensus size: 40
36167612 GCTCCTCGTT
* * *
36167622 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36167662 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36167701 CGAATGCCTTCGGGACTTAACCCGAATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36167741 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
36167781 CAAATGCCTTC
1 CAAATGCCTTC
36167792 AGATCTTAGT
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 76 0.66
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36174500 original size:42 final size:43
Alignment explanation
Indices: 36174389--36174527 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
36174379 CATATACAAT
* * * * *
36174389 GCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCGAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCAAACATCGAC
* * * * * * *
36174432 GCCACTGTCTCTGACAGGGTTTTACACGAAATCAGA-TTCGAC
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCAAACATCGAC
* *
36174474 GCCAATGTCCCAGACATGGTCTTACACGTAAAACAAA-AGTCGAT
1 GCCAATGTCCCAGACATGGTCTTACACG-AAATCAAACA-TCGAC
*
36174518 GCCAACGTCC
1 GCCAATGTCC
36174528 TAGATGTGGT
Statistics
Matches: 72, Mismatches: 22, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
42 27 0.38
43 32 0.44
44 13 0.18
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACACGAAATCAAACATCGAC
Found at i:36174997 original size:70 final size:69
Alignment explanation
Indices: 36174919--36175065 Score: 231
Period size: 70 Copynumber: 2.1 Consensus size: 69
36174909 ACAACACATT
* * * *
36174919 TTAATTAGCTAAACACCATGATTTTGTCCTAATTTGGATTGCCAATAATTTAAAGTATTACAGTA
1 TTAATTAGCTAAACACCATAAATTTGTCCTAATTTGGATAGCCAATAA-TTAAAGTATTACAATA
36174984 GCATA
65 GCATA
* *
36174989 TTAATTAGCTAAGCACCATAAATTTGTCCTAATTTGGATAGCCAATAATTACAGTATTACAATAG
1 TTAATTAGCTAAACACCATAAATTTGTCCTAATTTGGATAGCCAATAATTAAAGTATTACAATAG
36175054 CATA
66 CATA
36175058 TTAATTAG
1 TTAATTAG
36175066 TAATAAACTA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
69 27 0.38
70 44 0.62
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36
Consensus pattern (69 bp):
TTAATTAGCTAAACACCATAAATTTGTCCTAATTTGGATAGCCAATAATTAAAGTATTACAATAG
CATA
Found at i:36180053 original size:58 final size:57
Alignment explanation
Indices: 36179947--36180059 Score: 138
Period size: 58 Copynumber: 2.0 Consensus size: 57
36179937 TCTTGTTTCC
* ** **
36179947 AACATATGCTCACAAGAGCTTAATTAGGATTACCTGTCCGGGCTAAATCATTTCTAT
1 AACATATGCTCACAAGAGCTTAATCAGGATTACCAATCCAAGCTAAATCATTTCTAT
* *
36180004 AACATATGCTCA-AGAGGGCTTATATCAGGATTACCAATCCAAGCTAAATCCTTTCT
1 AACATATGCTCACA-AGAGCTTA-ATCAGGATTACCAATCCAAGCTAAATCATTTCT
36180060 GTAATGAGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
56 1 0.02
57 19 0.40
58 27 0.57
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (57 bp):
AACATATGCTCACAAGAGCTTAATCAGGATTACCAATCCAAGCTAAATCATTTCTAT
Found at i:36196269 original size:2 final size:2
Alignment explanation
Indices: 36196262--36196286 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36196252 TCATGGATTG
36196262 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
36196287 TAATGATTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:36214980 original size:18 final size:18
Alignment explanation
Indices: 36214957--36214991 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
36214947 TACCCTATTC
36214957 CTTTCATATGAAAATAGT
1 CTTTCATATGAAAATAGT
36214975 CTTTCATATGAAAATAG
1 CTTTCATATGAAAATAG
36214992 ACTCAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (18 bp):
CTTTCATATGAAAATAGT
Found at i:36215928 original size:55 final size:54
Alignment explanation
Indices: 36215810--36215995 Score: 207
Period size: 55 Copynumber: 3.4 Consensus size: 54
36215800 TCCATGTCGA
* *
36215810 ACATGGTCTTACATGTTATCCTTGCCTTAT-GAACTCAACAATGCCATGCCTTG
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAACAATGCCATGCCTTG
** * * * *
36215863 GTATGGTCTTACATGGGA-CCTTTACCTTATAGTAACTTATCAATGCCATGTCTTG
1 ACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTTAACAATGCCATGCCTTG
* * *
36215918 ACATGGTCTTACATGATATCCTTGCCTTAGA-AACCTTACCAATTGCCATGCCTTG
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAA-CTTAACAA-TGCCATGCCTTG
*
36215973 GCATGGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGGTATCCTT
36215996 AAACCCTAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 24 0.22
54 8 0.07
55 73 0.67
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAACAATGCCATGCCTTG
Found at i:36223134 original size:24 final size:24
Alignment explanation
Indices: 36223102--36223148 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
36223092 CTGTCAGGAG
**
36223102 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
36223126 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
36223149 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:36224670 original size:28 final size:28
Alignment explanation
Indices: 36224573--36224678 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 28
36224563 GGAAGCGTCC
* * *
36224573 TGGTTGCTATGCCACAATTATCTG-ATC
1 TGGTGGCTCTGCCACAATTATCTGTATA
*
36224600 TAGTGGCTCTGCCACATATT-TCTGT-TA
1 TGGTGGCTCTGCCACA-ATTATCTGTATA
*
36224627 TGGTGGCTCTGCCACAATTATCTGTATT
1 TGGTGGCTCTGCCACAATTATCTGTATA
* *
36224655 TGGTGACTCTGTCAC-ATTATCTGT
1 TGGTGGCTCTGCCACAATTATCTGT
36224679 TCTGGCAACC
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
26 3 0.04
27 47 0.70
28 17 0.25
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.40
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAATTATCTGTATA
Found at i:36224678 original size:54 final size:54
Alignment explanation
Indices: 36224573--36224679 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
36224563 GGAAGCGTCC
* * *
36224573 TGGTTGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATTTCTGTTA
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTA
* * * *
36224627 TGGTGGCTCTGCCACAATTATCTGTATTTGGTGACTCTGTCACAT-TATCTGTT
1 TGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
36224680 CTGGCAACCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 29 0.64
55 16 0.36
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTA
Found at i:36237942 original size:48 final size:48
Alignment explanation
Indices: 36237881--36238107 Score: 239
Period size: 48 Copynumber: 4.7 Consensus size: 48
36237871 CTACATGTGA
* * * *
36237881 GATCCCATGTAAGACCATGTCTGGGACATAGCATTGGCATTGAGATGA
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGT
* * *
36237929 GATCTCATATAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGT
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGT
* *
36237977 G-TGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACG-TGT
1 GAT-CTCA-TGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GATGT
* * * *
36238025 GAGC-CAGTGTAAGACAATGTCTGGGACATGGCATCGACATCT-ATATGT
1 GATCTCA-TGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGATGT
* *
36238073 GATTTCGTGTAAGACCATGTCTGGGACATGGCATC
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATC
36238108 ATTATGACAC
Statistics
Matches: 150, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
47 2 0.01
48 147 0.98
49 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (48 bp):
GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGT
Found at i:36238052 original size:96 final size:96
Alignment explanation
Indices: 36237888--36238107 Score: 268
Period size: 96 Copynumber: 2.3 Consensus size: 96
36237878 TGAGATCCCA
* * * * *
36237888 TGTAAGACCATGTCTGGGACATAGCATTGGCATTGAGATGAGATCTCATATAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTCATATAAGACAATGTCTGG
* *
36237953 GACATGGCATCGGCGT-TGATATGTG-TGCTAG
66 GACATGGCATCGACATCT-ATATGTGAT-CTAG
* * *
36237984 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACG-TGTGAGC-CAGTGTAAGACAATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGAGAGCTCA-TATAAGACAATGTCT
* *
36238047 GGGACATGGCATCGACATCTATATGTGATTTCG
64 GGGACATGGCATCGACATCTATATGTGATCTAG
36238080 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
36238108 ATTATGACAC
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
95 2 0.02
96 103 0.95
97 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTCATATAAGACAATGTCTGG
GACATGGCATCGACATCTATATGTGATCTAG
Found at i:36238198 original size:48 final size:48
Alignment explanation
Indices: 36237881--36238198 Score: 236
Period size: 48 Copynumber: 6.9 Consensus size: 48
36237871 CTACATGTGA
* * * * *
36237881 GATCCCATGTAAGACCATGTCTGGGACATAGCATTGGCATTGAGATGA
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
36237929 GATCTCATATAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGT
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * **
36237977 G-TGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACGTGT
1 GAT-CTCA-TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * *
36238025 GAGC-CAGTGTAAGACAATGTCTGGGACATGGCATCGACATCTATATGT
1 GATCTCA-TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * *
36238073 GATTTCGTGTAAGACCATGTCTGGGACATGGCA-T--CAT---TATGA
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
36238115 CA-CATCGTGTAAGACC--GTAGTGGGGC-T---ATTGGCATCGATATGT
1 GATC-TCATGTAAGACCATGT-CTGGGACATGGCATTGGCATCGATATGT
* *
36238158 GATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
36238199 TTATTATATG
Statistics
Matches: 214, Mismatches: 36, Indels: 40
0.74 0.12 0.14
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
40 6 0.03
41 5 0.02
42 17 0.08
43 16 0.07
44 5 0.02
45 5 0.02
47 2 0.01
48 155 0.72
49 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (48 bp):
GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:36241889 original size:40 final size:40
Alignment explanation
Indices: 36241808--36242025 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
36241798 CAACCAAGTA
** * *
36241808 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
** *
36241847 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
36241887 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
* *
36241927 CCTTCGGGACTTAGCCCAGAAATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
36241967 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
36242007 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36242026 TTATCATCCA
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 13 0.08
40 152 0.92
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:36244959 original size:29 final size:29
Alignment explanation
Indices: 36244925--36244983 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
36244915 TCGGTTAGGT
36244925 AAATTGAATAATAATAGTTTACAGAAATA
1 AAATTGAATAATAATAGTTTACAGAAATA
*
36244954 AAATTGAATAATAATAGTTTACATAAATA
1 AAATTGAATAATAATAGTTTACAGAAATA
36244983 A
1 A
36244984 GACAAATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.32
Consensus pattern (29 bp):
AAATTGAATAATAATAGTTTACAGAAATA
Found at i:36244982 original size:16 final size:16
Alignment explanation
Indices: 36244934--36244983 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
36244924 TAAATTGAAT
*
36244934 AATAATAGTTTACAGA
1 AATAATAGTTTACATA
* *
36244950 AATAA-AATTGA-AT-
1 AATAATAGTTTACATA
36244963 AATAATAGTTTACATA
1 AATAATAGTTTACATA
36244979 AATAA
1 AATAA
36244984 GACAAATACA
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 6 0.23
16 10 0.38
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.32
Consensus pattern (16 bp):
AATAATAGTTTACATA
Found at i:36245730 original size:29 final size:31
Alignment explanation
Indices: 36245697--36245754 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
36245687 TATGTGCATT
*
36245697 ATATACATGCTGAA-TT-AAGT-TGTAAAAGA
1 ATATAAATG-TGAAGTTGAAGTATGTAAAAGA
36245726 ATATAAATGTGAAGTTGAAGTATGTAAAA
1 ATATAAATGTGAAGTTGAAGTATGTAAAA
36245755 TATGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 4 0.16
31 7 0.28
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (31 bp):
ATATAAATGTGAAGTTGAAGTATGTAAAAGA
Found at i:36254231 original size:49 final size:49
Alignment explanation
Indices: 36254168--36254404 Score: 300
Period size: 49 Copynumber: 4.8 Consensus size: 49
36254158 GGCATCCGAG
* * *
36254168 ATGTGTACCAGTGTAAGACCATGTCTAGACATGGCATCGGCACTGATAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGACATGGCATCGGCACTGATAT
* * * *
36254217 ATTTGTGCCTGTGTAAGATCATGTCTGGGCATGGCATCAGCACTGATAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGGACATGGCATCGGCACTGATAT
* *
36254266 ATGTGTGCCTGTGAAAGACCATGTTTGGGACATGGCATCGGCACTGATAT
1 ATGTGTGCCTGTGTAAGACCATGTCT-GGACATGGCATCGGCACTGATAT
* *
36254316 ATGTATGCTTGTGTAAGACCATGTCTGGCACATGGCATC-G-AC-GATGAT
1 ATGTGTGCCTGTGTAAGACCATGTCTGG-ACATGGCATCGGCACTGAT-AT
* *
36254364 ATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 ATGTGTGCCTGTGTAAGACCATGTCT-GGACATGGCATCGG
36254405 TGATGATATG
Statistics
Matches: 162, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
47 3 0.02
48 36 0.22
49 70 0.43
50 53 0.33
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
ATGTGTGCCTGTGTAAGACCATGTCTGGACATGGCATCGGCACTGATAT
Found at i:36254316 original size:50 final size:50
Alignment explanation
Indices: 36254132--36254445 Score: 317
Period size: 48 Copynumber: 6.4 Consensus size: 50
36254122 AGATTCCATA
* * * * * * *
36254132 TAAGACCATGTATGGGACATGACATTGGCATCCG--AGATGTGTACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCA-CTGATATATGTGTGCCTGTG
* *
36254181 TAAGACCATGTCT-AGACATGGCATCGGCACTGATATATTTGTGCCTGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGATATATGTGTGCCTGTG
* *
36254230 TAAGATCATGTCTGGG-CATGGCATCAGCACTGATATATGTGTGCCTGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGATATATGTGTGCCTGTG
* * * *
36254279 AAAGACCATGTTTGGGACATGGCATCGGCACTGATATATGTATGCTTGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGATATATGTGTGCCTGTG
* * *
36254329 TAAGACCATGTCTGGCACATGGCATC-G-AC-GATGATATATGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGAT-ATATGTGTGCCTGTG
** *
36254377 TAAGACCATGTCTGGGACATGGCATCGG---TGATGATATGTG-GATTAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCACTGAT-ATATGTGTGCCT-GTG
*
36254425 TAAGACCACGTCTGGGACATG
1 TAAGACCATGTCTGGGACATG
36254446 CCATTGGTAC
Statistics
Matches: 224, Mismatches: 33, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
47 6 0.03
48 83 0.37
49 81 0.36
50 54 0.24
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACTGATATATGTGTGCCTGTG
Found at i:36259254 original size:55 final size:55
Alignment explanation
Indices: 36259119--36259247 Score: 152
Period size: 55 Copynumber: 2.3 Consensus size: 55
36259109 GCGATATGGT
** * * *
36259119 CGTGGTCGAACCTGCCAAAACAACACGGGCGTGTGACACGCCTGTGTGGAAGAAC
1 CGTGGTCGAACCTGTTAAAACAACACGGGCGTGTGACACGCCAGTGTCGAACAAC
* * * **
36259174 CATGGGCAAACCTGTTAAAACAACACGGGCGT-TCGACACGCCAGTGTCGAACCCC
1 CGTGGTCGAACCTGTTAAAACAACACGGGCGTGT-GACACGCCAGTGTCGAACAAC
36259229 CGTGGTCGAACCTGTTAAA
1 CGTGGTCGAACCTGTTAAA
36259248 TTAACACAGG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 1 0.02
55 59 0.98
ACGTcount: A:0.28, C:0.29, G:0.27, T:0.16
Consensus pattern (55 bp):
CGTGGTCGAACCTGTTAAAACAACACGGGCGTGTGACACGCCAGTGTCGAACAAC
Found at i:36261297 original size:7 final size:7
Alignment explanation
Indices: 36261281--36261309 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
36261271 ATTTTAGAAA
36261281 TTTT-AT
1 TTTTAAT
36261287 TTTTAAT
1 TTTTAAT
36261294 TTTTAAT
1 TTTTAAT
36261301 TTTTAAT
1 TTTTAAT
36261308 TT
1 TT
36261310 CGGTTATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTAAT
Found at i:36268072 original size:23 final size:23
Alignment explanation
Indices: 36268042--36268092 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
36268032 AAATCTCTTG
36268042 CACA-TGATAGCCTCGGTGGAAA
1 CACACTGATAGCCTCGGTGGAAA
*
36268064 CACACTGATAGCCTTGGTGGAAA
1 CACACTGATAGCCTCGGTGGAAA
36268087 CACACT
1 CACACT
36268093 CTCGAGCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (23 bp):
CACACTGATAGCCTCGGTGGAAA
Found at i:36279353 original size:20 final size:19
Alignment explanation
Indices: 36279302--36279355 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
36279292 AATTAGATAA
36279302 TTATTATTTATTTAATATT
1 TTATTATTTATTTAATATT
* ** *
36279321 TTAATAAGATATTTATTATT
1 TT-ATTATTTATTTAATATT
36279341 TTATTATTTTATTTA
1 TTATTA-TTTATTTA
36279356 GTATATATAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTATTATTTATTTAATATT
Found at i:36288905 original size:43 final size:43
Alignment explanation
Indices: 36288844--36288928 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
36288834 GTTTGAGTTC
36288844 ATGATGGATGTGTTACATGTTATGTGGTAGCTTTGGCTACGTA
1 ATGATGGATGTGTTACATGTTATGTGGTAGCTTTGGCTACGTA
36288887 ATGATGGATGTGTTACATGTTATGTGGTAGCTTTGGCTACGT
1 ATGATGGATGTGTTACATGTTATGTGGTAGCTTTGGCTACGT
36288929 TTGTATACGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (43 bp):
ATGATGGATGTGTTACATGTTATGTGGTAGCTTTGGCTACGTA
Found at i:36290299 original size:20 final size:20
Alignment explanation
Indices: 36290270--36290307 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
36290260 CCCACACAAG
*
36290270 TAAAGGACACGGGCGTGTCC
1 TAAAGCACACGGGCGTGTCC
36290290 TAAAGCACACGGGCGTGT
1 TAAAGCACACGGGCGTGT
36290308 GCATTGCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.24, G:0.34, T:0.16
Consensus pattern (20 bp):
TAAAGCACACGGGCGTGTCC
Found at i:36292238 original size:19 final size:19
Alignment explanation
Indices: 36292214--36292254 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
36292204 GGGAGACATC
36292214 ACACTATCACGAAGCTGTA
1 ACACTATCACGAAGCTGTA
36292233 ACACTATCACGAAGCTGTA
1 ACACTATCACGAAGCTGTA
36292252 ACA
1 ACA
36292255 TGTATAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.27, G:0.15, T:0.20
Consensus pattern (19 bp):
ACACTATCACGAAGCTGTA
Found at i:36306921 original size:24 final size:24
Alignment explanation
Indices: 36306888--36306949 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
36306878 CTGAGTTGAT
* *
36306888 GAACAATAAGCTCTATCAAGCTG-
1 GAACAGTAAGCTCTAACAAGCTGA
* *
36306911 GAAATAGTAAGCTCTAACGAGCTGA
1 G-AACAGTAAGCTCTAACAAGCTGA
36306936 GAACAGTAAGCTCT
1 GAACAGTAAGCTCT
36306950 TATGAGCTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.03
24 30 0.94
25 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (24 bp):
GAACAGTAAGCTCTAACAAGCTGA
Found at i:36306956 original size:24 final size:26
Alignment explanation
Indices: 36306916--36306984 Score: 88
Period size: 24 Copynumber: 2.7 Consensus size: 26
36306906 AGCTGGAAAT
* *
36306916 AGTAAGCTCTAACGAGCTGAGA-A-C
1 AGTAAGCTCTTATGAGCTGAGATATC
*
36306940 AGTAAGCTCTTATGAGCTGATATATC
1 AGTAAGCTCTTATGAGCTGAGATATC
*
36306966 AGTAAGCTCATATGAGCTG
1 AGTAAGCTCTTATGAGCTG
36306985 CAGTGAGTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 19 0.49
25 1 0.03
26 19 0.49
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
AGTAAGCTCTTATGAGCTGAGATATC
Found at i:36308611 original size:22 final size:23
Alignment explanation
Indices: 36308565--36308618 Score: 83
Period size: 22 Copynumber: 2.4 Consensus size: 23
36308555 TAGCTTGTAT
*
36308565 GAGCTTACCGTTTTAGCTCTACG
1 GAGCTTACCGTTTCAGCTCTACG
*
36308588 GAGCTTACCG-TTCAGCTCTTCG
1 GAGCTTACCGTTTCAGCTCTACG
36308610 GAGCTTACC
1 GAGCTTACC
36308619 ATTTATCAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 19 0.66
23 10 0.34
ACGTcount: A:0.17, C:0.30, G:0.22, T:0.31
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCTACG
Found at i:36308852 original size:25 final size:25
Alignment explanation
Indices: 36308787--36308859 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
36308777 GATTATATGA
*
36308787 TATAAGAGCTATATGATTTACATGAAT
1 TATAAGA--TATATGAATTACATGAAT
* * *
36308814 TATAAGTTACATGAATTACATGGAT
1 TATAAGATATATGAATTACATGAAT
* *
36308839 TTTATGATATATGAATTACAT
1 TATAAGATATATGAATTACAT
36308860 AACTTATGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 32 0.84
27 6 0.16
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (25 bp):
TATAAGATATATGAATTACATGAAT
Found at i:36310011 original size:20 final size:20
Alignment explanation
Indices: 36309951--36310011 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
36309941 TTCTGAAATT
*
36309951 TTTAATATGTTACAATTT-AG
1 TTTAATATG-TATAATTTAAG
* * *
36309971 TCCTAA-ATGTATGATTAAAG
1 T-TTAATATGTATAATTTAAG
36309991 TTTAATATGTATAATTTAAG
1 TTTAATATGTATAATTTAAG
36310011 T
1 T
36310012 ACATAATGGA
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
19 8 0.26
20 20 0.65
21 3 0.10
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (20 bp):
TTTAATATGTATAATTTAAG
Found at i:36312206 original size:20 final size:20
Alignment explanation
Indices: 36312181--36312221 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36312171 TTTTGATATC
*
36312181 ATTGTAGCTTAATCTAACTA
1 ATTGTACCTTAATCTAACTA
36312201 ATTGTACCTTAATCTAACTA
1 ATTGTACCTTAATCTAACTA
36312221 A
1 A
36312222 CCCAAGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (20 bp):
ATTGTACCTTAATCTAACTA
Found at i:36315521 original size:40 final size:40
Alignment explanation
Indices: 36315466--36315676 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
36315456 ATTTGAATGA
*
36315466 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
36315506 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * * *
36315546 TATCCGGCCTAAGACCCGAAGGCATTTGTGCGAGTAGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGT-GATTT
* * * *
36315586 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
36315626 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
36315666 TATCC-GGCTAA
1 TATCCGGGCTAA
36315677 ATTCTGAAGA
Statistics
Matches: 153, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 7 0.05
40 143 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:36333048 original size:37 final size:37
Alignment explanation
Indices: 36333002--36333172 Score: 152
Period size: 37 Copynumber: 4.5 Consensus size: 37
36332992 TACTCGTTCA
*
36333002 AATGCCTTCGGACATAGCCCGTTATAGTAACTCGCAC
1 AATGCCTTCGGACTTAGCCCGTTATAGTAACTCGCAC
*
36333039 AATGCCTTCGGACTTAACCCGGATT-TAGTAACTCGCACC
1 AATGCCTTCGGACTTAGCCC-G-TTATAGTAACTCGCA-C
**
36333078 AATGCCTTCGG-CTTAG-CCGGAATTAGTAACTCGCAC
1 AATGCCTTCGGACTTAGCCCGTTA-TAGTAACTCGCAC
* * * * *
36333114 AAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC
1 -AATGCCTTCGGA-CTTAG-CCCGTTATAGTAAC-TCGCAC
*
36333155 AAAG-CTTCGGACTTAGCC
1 AATGCCTTCGGACTTAGCC
36333173 TGGACATCAT
Statistics
Matches: 111, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
36 2 0.02
37 45 0.41
38 22 0.20
39 26 0.23
40 8 0.07
41 8 0.07
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (37 bp):
AATGCCTTCGGACTTAGCCCGTTATAGTAACTCGCAC
Found at i:36341265 original size:39 final size:40
Alignment explanation
Indices: 36341151--36341333 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
36341141 GCTACTCGTT
*
36341151 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36341191 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36341231 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
36341270 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36341311 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
36341334 AACATCATTC
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36341296 original size:79 final size:80
Alignment explanation
Indices: 36341153--36341333 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
36341143 TACTCGTTCA
* *
36341153 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
36341218 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
***
36341233 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
36341295 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
36341312 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
36341334 AACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 58 0.67
80 25 0.29
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:36344537 original size:15 final size:17
Alignment explanation
Indices: 36344507--36344538 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
36344497 ACTTGTATTC
36344507 ATATTGTCATTGAATTG
1 ATATTGTCATTGAATTG
36344524 ATATTGT-A-TGAATTG
1 ATATTGTCATTGAATTG
36344539 TTAAGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (17 bp):
ATATTGTCATTGAATTG
Found at i:36344858 original size:44 final size:44
Alignment explanation
Indices: 36344741--36345047 Score: 192
Period size: 47 Copynumber: 6.7 Consensus size: 44
36344731 ATAGAAATGA
* *
36344741 GTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT--A-AGAGTT
** * * *
36344789 -AACCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGTT
* ** *
36344832 GTGCTAGTGTAAGACATGTCTGGGACATGCATTAGC-ACGCATGTAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAG-A-GT-T
* * * * * *
36344878 GAGAGCCACTGTAAGACTATGTC-GAGGACATGGCCTC-GATATAGAAATGA
1 --GTGCCAGTGTAAGAC-ATGTCTG-GGACAT-GCATCGGCTA-AG-AGT-T
* * * *
36344928 GTGCCAGAGTAAGACACGTCTGGGACATGCATCAGCCTCGACAGAGAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCT--A-AGAGTT
* *
36344976 -AGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGTT
*
36345019 GTGCTAGTGTAAGACATGTCTGGGACATG
1 GTGCCAGTGTAAGACATGTCTGGGACATG
36345048 TATCAGCACT
Statistics
Matches: 195, Mismatches: 47, Indels: 38
0.70 0.17 0.14
Matches are distributed among these distances:
43 12 0.06
44 55 0.28
45 2 0.01
46 10 0.05
47 66 0.34
48 27 0.14
49 13 0.07
50 8 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGTT
Found at i:36344859 original size:91 final size:91
Alignment explanation
Indices: 36344749--36345054 Score: 341
Period size: 91 Copynumber: 3.3 Consensus size: 91
36344739 GAGTGCCAGA
* *
36344749 GTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAACCAATGTAAGACGTGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
36344814 ACGCATCGGCTAAGAGTTGTGCTAGT
66 ACGCATCGGCTAAGAGTTGTGCTAGT
* * * * *
36344840 GTAAGACATGTCTGGGACATGCATTAG-CACG-CATGTATGAGAGCCACTGTAAGACTATGTC-G
1 GTAAGACATGTCTGGGACATGCATCAGCCTCGACA-G-A-GATAGCCAATGTAAGAC-GTGTCTG
* * * * * * *
36344902 AGGACATGGCCTC-GATATAGAAATGAGTGCCAGA
62 -GGACA-CGCATCGGCTA-AG-AGT-TGTGCTAGT
* *
36344936 GTAAGACACGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
*
36345001 ATGCATCGGCTAAGAGTTGTGCTAGT
66 ACGCATCGGCTAAGAGTTGTGCTAGT
*
36345027 GTAAGACATGTCTGGGACATGTATCAGC
1 GTAAGACATGTCTGGGACATGCATCAGC
36345055 ACTCATGTAT
Statistics
Matches: 173, Mismatches: 29, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
89 2 0.01
90 4 0.02
91 58 0.34
92 17 0.10
93 18 0.10
94 18 0.10
95 18 0.10
96 32 0.18
97 4 0.02
98 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (91 bp):
GTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCCAATGTAAGACGTGTCTGGGAC
ACGCATCGGCTAAGAGTTGTGCTAGT
Found at i:36344968 original size:187 final size:187
Alignment explanation
Indices: 36344649--36345101 Score: 689
Period size: 187 Copynumber: 2.4 Consensus size: 187
36344639 TGATTTCTGC
* * * *
36344649 GCTAGTGTAAGACATGTATGGGACATGC-TTCAGC-CATAT-TATGAAAGTCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATT-AGCACACATGTATGAGAGCCAGTGTAAGACCAT
* * * *
36344711 GTCTAGGACATGGTATCGATATAGAAATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGG
65 GTCGAGGACATGGCATCGATATAGAAATGAGTGCCAGAGTAAGACACGTCTGGGACATGCATCAG
36344776 CCTCGACAGAGATAACCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
130 CCTCGACAGAGATAACCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
* * *
36344834 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACGCATGTATGAGAGCCACTGTAAGACTATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACACATGTATGAGAGCCAGTGTAAGACCATG
*
36344899 TCGAGGACATGGCCTCGATATAGAAATGAGTGCCAGAGTAAGACACGTCTGGGACATGCATCAGC
66 TCGAGGACATGGCATCGATATAGAAATGAGTGCCAGAGTAAGACACGTCTGGGACATGCATCAGC
* * *
36344964 CTCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGT
131 CTCGACAGAGATAACCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
* * * *
36345021 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACTCATGTATGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACACATGTATGAGAGCCAGTGTAAGACCATG
36345086 TCTG-GGACATGGCATC
66 TC-GAGGACATGGCATC
36345102 AGCAATTTCT
Statistics
Matches: 242, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
185 30 0.12
186 5 0.02
187 206 0.85
188 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (187 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTAGCACACATGTATGAGAGCCAGTGTAAGACCATG
TCGAGGACATGGCATCGATATAGAAATGAGTGCCAGAGTAAGACACGTCTGGGACATGCATCAGC
CTCGACAGAGATAACCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
Found at i:36350265 original size:22 final size:24
Alignment explanation
Indices: 36350229--36350276 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
36350219 AATTCTATGC
36350229 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
36350251 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
36350275 TA
1 TA
36350277 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:36355821 original size:46 final size:45
Alignment explanation
Indices: 36355697--36355861 Score: 113
Period size: 46 Copynumber: 3.5 Consensus size: 45
36355687 TGTGAGAGCT
* **
36355697 AGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACGAGT-GGT
1 AGTGTAAGA-CATGTCT-GGACAT-GCATCGGCTA-CGAGACGA-TAGCC
* *
36355745 AGAGTAAGATATGTCTGGAACATGCATCGGCCT-CGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGG-ACATGCATCGG-CTACGAGACGAT-AGCC
** * **
36355791 AGTGTAAGACATGTCTGAGACATGTGTCGGCTACGAGATGATAGTT
1 AGTGTAAGACATGTCTG-GACATGCATCGGCTACGAGACGATAGCC
36355837 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCT-GGACATG
36355862 GCTTCAACTT
Statistics
Matches: 95, Mismatches: 12, Indels: 21
0.74 0.09 0.16
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 57 0.60
47 26 0.27
48 9 0.09
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCTACGAGACGATAGCC
Found at i:36357107 original size:21 final size:22
Alignment explanation
Indices: 36357068--36357108 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
36357058 TTGGAACGGT
*
36357068 CACACGGGCGTGTTGCCCCTCC
1 CACACGAGCGTGTTGCCCCTCC
36357090 CACACGAGCGTG-TGCCCCT
1 CACACGAGCGTGTTGCCCCT
36357109 GTGACAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGAGCGTGTTGCCCCTCC
Found at i:36358673 original size:13 final size:13
Alignment explanation
Indices: 36358655--36358686 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
36358645 ATGCAGGGGA
36358655 CACACAACGGTAT
1 CACACAACGGTAT
36358668 CACACAACGGTAT
1 CACACAACGGTAT
36358681 CACACA
1 CACACA
36358687 CCCATAGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.34, G:0.12, T:0.12
Consensus pattern (13 bp):
CACACAACGGTAT
Found at i:36359706 original size:42 final size:43
Alignment explanation
Indices: 36359627--36359716 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 43
36359617 TTACATGGGG
* * * *
36359627 TCTCATATCGATGCCAATAGCCCAACTATGGTCTTACACAAAA
1 TCTCAGATCGATGCCAATAACCCAAATATAGTCTTACACAAAA
**
36359670 TCTCAGATCGATGCC-ATAACCCAAATATAGTCTTACACGTAA
1 TCTCAGATCGATGCCAATAACCCAAATATAGTCTTACACAAAA
36359712 TCTCA
1 TCTCA
36359717 ACTAACCCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 27 0.66
43 14 0.34
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (43 bp):
TCTCAGATCGATGCCAATAACCCAAATATAGTCTTACACAAAA
Found at i:36361563 original size:27 final size:27
Alignment explanation
Indices: 36361544--36361782 Score: 327
Period size: 27 Copynumber: 8.9 Consensus size: 27
36361534 ATTACCAAAG
* * *
36361544 TACCCTCGATTTACAGAATTGCCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
**
36361571 TACCCTCGATTTATAGAGCTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
36361598 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
36361625 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
36361652 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
** *
36361679 TACTTTCGATTTACAGAA-TACCCATTT
1 TACCCTCGATTTATAGAATTA-CCATTT
* * *
36361706 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
36361733 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
36361760 TACCCTCGATTTACAGAATTACC
1 TACCCTCGATTTATAGAATTACC
36361783 GTACAAAATT
Statistics
Matches: 186, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 182 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:36361948 original size:27 final size:27
Alignment explanation
Indices: 36361787--36362076 Score: 230
Period size: 27 Copynumber: 10.8 Consensus size: 27
36361777 ATTACCGTAC
** * * **
36361787 AAAATTACTGAAATACCCATGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
36361814 AAAATTACCTAAATACCCTTGATTAGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
36361841 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
36361868 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
**
36361895 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
36361922 AAAATTACCAAAATACCTCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
36361949 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * **
36361976 AAAA-TATCGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* **
36362002 AGAATTACCAAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* **
36362029 AAAATTACCGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* *
36362056 AGAATTACTAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
36362077 TAGGGTAGAA
Statistics
Matches: 225, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
25 1 0.00
26 19 0.08
27 205 0.91
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:36362077 original size:27 final size:27
Alignment explanation
Indices: 36361983--36362172 Score: 254
Period size: 27 Copynumber: 7.0 Consensus size: 27
36361973 TGTAAAATAT
36361983 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
36362010 CAAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
36362037 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
36362064 TAAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36362091 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
36362118 CGAAATACCCTTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * ** *
36362145 GGAGATACCCTTGCGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
36362172 C
1 C
36362173 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:36362411 original size:25 final size:25
Alignment explanation
Indices: 36362377--36362496 Score: 195
Period size: 25 Copynumber: 4.8 Consensus size: 25
36362367 AGGAAGTGCT
36362377 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
36362402 AAAAGGGCTTTGCCCTAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
36362427 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
36362452 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
36362477 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
36362497 ATTAAAAGAG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 88 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:36362520 original size:50 final size:50
Alignment explanation
Indices: 36362377--36362521 Score: 161
Period size: 50 Copynumber: 2.9 Consensus size: 50
36362367 AGGAAGTGCT
** * *
36362377 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATC-A
**
36362427 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
36362477 AAAAGGGCTTTGCCCTAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
36362522 ATAAGATAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
48 5 0.06
49 10 0.12
50 69 0.81
51 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:36362520 original size:75 final size:75
Alignment explanation
Indices: 36362377--36362521 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 75
36362367 AGGAAGTGCT
* **
36362377 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACTGAAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCTAGTTTACTGAAAAGGGCTAGGCCC
36362442 CAGTTTACCG
66 CAGTTTACCG
* *
36362452 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCTAG-TTA-TTAAAAGAGGCTAGGCC
1 AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCTAGTTTACTGAAAAG-GGCTAGGCC
36362515 TCCAGTT
65 -CCAGTT
36362522 ATAAGATAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
73 6 0.10
74 10 0.16
75 47 0.75
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (75 bp):
AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCTAGTTTACTGAAAAGGGCTAGGCCC
CAGTTTACCG
Found at i:36362787 original size:29 final size:29
Alignment explanation
Indices: 36362717--36362794 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 29
36362707 ATTTACAGTG
*
36362717 AAGGCTTCGGCCCAGTGATTTAATTTATGAA
1 AAGGCTTCGGCCCAGTAATTTAA--TATGAA
*
36362748 AAGGCTCCGGCCCAGTAACTGTTAA-ATG-A
1 AAGGCTTCGGCCCAGTAA-T-TTAATATGAA
*
36362777 AAGGCTTCGGCCTAGTAA
1 AAGGCTTCGGCCCAGTAA
36362795 ATGTCAAGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 17 0.41
30 3 0.07
31 16 0.39
32 1 0.02
33 4 0.10
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (29 bp):
AAGGCTTCGGCCCAGTAATTTAATATGAA
Found at i:36378232 original size:40 final size:39
Alignment explanation
Indices: 36378172--36378390 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 39
36378162 TATTCGAATG
* *
36378172 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* * * *
36378212 ATATCCGGACTAAGATCCGAAGGCATTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAG-TGACT
**
36378251 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAACGACT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* * * *
36378291 ATATCCGGGCTAAGCCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* **
36378331 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACT
36378370 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
36378391 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 48 0.32
40 88 0.59
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACT
Found at i:36378373 original size:79 final size:79
Alignment explanation
Indices: 36378172--36378381 Score: 246
Period size: 79 Copynumber: 2.7 Consensus size: 79
36378162 TATTCGAATG
* * * * * *
36378172 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
* *
36378237 TTGTGCGAGTTGCT
66 TTATGCGAGTTGCC
** *
36378251 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAACGACTATATCCGGGCTAAGCCCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
*
36378316 TTTATGCTAG-TGACC
66 -TTATGCGAGTTG-CC
* **
36378331 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCTAGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAA
36378382 ATCCCGAAGA
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
78 6 0.05
79 74 0.66
80 32 0.29
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
TTATGCGAGTTGCC
Found at i:36385619 original size:93 final size:93
Alignment explanation
Indices: 36385489--36385661 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
36385479 CGCCCATAAG
* * *
36385489 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
36385554 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
36385582 CGAACTCGGACTCAGCTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
36385647 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
36385662 CAAATATCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:36385657 original size:46 final size:46
Alignment explanation
Indices: 36385482--36385657 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
36385472 TGTAACCCGC
* * *
36385482 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
36385528 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* * *
36385578 -C-TCA-CGAACTCGGACTCAGCTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
36385621 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
36385658 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 66 0.61
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:36385676 original size:46 final size:46
Alignment explanation
Indices: 36385533--36385676 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 46
36385523 CGCATCCATA
* * * *
36385533 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AATATCTC
* * * * ** * *
36385581 A-CGAACTCGGACTCAGCTCAACGAGTTCGGACGCTCGCAT-CCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATC-TC
36385626 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCTC
36385672 AGTGA
1 AGTGA
36385677 CATGTCACTT
Statistics
Matches: 74, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
44 1 0.01
45 3 0.04
46 39 0.53
47 30 0.41
48 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCTC
Found at i:36389066 original size:40 final size:39
Alignment explanation
Indices: 36389004--36389222 Score: 228
Period size: 40 Copynumber: 5.6 Consensus size: 39
36388994 TATTCGAATG
* * *
36389004 ATATCCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* * * *
36389044 ATATCCGGACTAAGATCCGAAGGCATTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAG-TGACT
**
36389083 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAACGACT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* * * *
36389123 ATATCCGGGCTAAGCCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACT
* **
36389163 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACT
36389202 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
36389223 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 48 0.32
40 87 0.58
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACT
Found at i:36389205 original size:79 final size:79
Alignment explanation
Indices: 36389004--36389213 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 79
36388994 TATTCGAATG
* * * * * * *
36389004 ATATCCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
* *
36389069 TTGTGCGAGTTGCT
66 TTATGCGAGTTGCC
** *
36389083 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAACGACTATATCCGGGCTAAGCCCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
*
36389148 TTTATGCTAG-TGACC
66 -TTATGCGAGTTG-CC
* **
36389163 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCTAGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAA
36389214 ATCCCGAAGA
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 6 0.05
79 73 0.66
80 32 0.29
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
TTATGCGAGTTGCC
Found at i:36423048 original size:43 final size:43
Alignment explanation
Indices: 36423001--36423102 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 43
36422991 AACGAACTCA
* *
36423001 CACACTAAGTGCCGATTAATTAGCTGAAACTATAATTGTATGG
1 CACACTAAGTGCCAATTAATTAGCTGAAACTATAATTGTATCG
* * ** *
36423044 CACACTTAGTGCCAATTAATTAGTTGAGGCTATAATTGTTTCG
1 CACACTAAGTGCCAATTAATTAGCTGAAACTATAATTGTATCG
**
36423087 CACACTTTGTGCCAAT
1 CACACTAAGTGCCAAT
36423103 ACATTAAACA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (43 bp):
CACACTAAGTGCCAATTAATTAGCTGAAACTATAATTGTATCG
Found at i:36425146 original size:26 final size:26
Alignment explanation
Indices: 36425093--36425148 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
36425083 AAATAAAATG
*
36425093 TATTCTCTTTTACTTTCTTAATTTTT
1 TATTCTCTTTTACTTTCTTAATTCTT
* *
36425119 TATTCTCTTTTGCTATT-TTACTTCTT
1 TATTCTCTTTTACT-TTCTTAATTCTT
36425145 TATT
1 TATT
36425149 TTTACCTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.68
Consensus pattern (26 bp):
TATTCTCTTTTACTTTCTTAATTCTT
Found at i:36425159 original size:15 final size:14
Alignment explanation
Indices: 36425134--36425168 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
36425124 TCTTTTGCTA
36425134 TTTTACTTCTTTAT
1 TTTTACTTCTTTAT
36425148 TTTTACCTTCTTTAT
1 TTTTA-CTTCTTTAT
36425163 TATTTA
1 T-TTTA
36425169 TTTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 10 0.53
16 4 0.21
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTACTTCTTTAT
Found at i:36426537 original size:25 final size:25
Alignment explanation
Indices: 36426509--36426559 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36426499 TAAAATAAAT
36426509 TACTAATTAATCATGAGGTGTAGTG
1 TACTAATTAATCATGAGGTGTAGTG
36426534 TACTAATTAATCATGAGGTGTAGTG
1 TACTAATTAATCATGAGGTGTAGTG
36426559 T
1 T
36426560 GGTGGTTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
TACTAATTAATCATGAGGTGTAGTG
Found at i:36428891 original size:20 final size:22
Alignment explanation
Indices: 36428858--36428898 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
36428848 TATATGTGTG
*
36428858 ATAGTTTTGTATGC-TAATTTT
1 ATAGTTTTGGATGCTTAATTTT
36428879 ATAG-TTTGGATGCTTAATTT
1 ATAGTTTTGGATGCTTAATTT
36428899 GACAAAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.24, C:0.05, G:0.17, T:0.54
Consensus pattern (22 bp):
ATAGTTTTGGATGCTTAATTTT
Found at i:36430015 original size:42 final size:43
Alignment explanation
Indices: 36429968--36430080 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 43
36429958 TTCTAGTATG
* *
36429968 TGATTTCGTGTGAGACCATGTCTGGGACATTGGCA-TCATATA
1 TGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATTCATATA
* *
36430010 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTCATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATTCATATA
** * * *
36430053 TGATAACATGTAAGATCACGTCTGGGAC
1 TGATTTCGTGTAAGACCATGTCTGGGAC
36430081 GTTGGAATTG
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 32 0.53
43 28 0.47
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATTCATATA
Found at i:36430065 original size:43 final size:42
Alignment explanation
Indices: 36429980--36430080 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 42
36429970 ATTTCGTGTG
* * ** *
36429980 AGACCATGTCTGGGACATTGGCATCATATATGATTTCGTGTA
1 AGACCCTGTCTGGGACAGTGGCATCATATATGATAACATGTA
*
36430022 AGACCCTGTCTGGGACAGTGGCATTCATATTTGATAACATGTA
1 AGACCCTGTCTGGGACAGTGGCA-TCATATATGATAACATGTA
*
36430065 AGATCAC-GTCTGGGAC
1 AGA-CCCTGTCTGGGAC
36430081 GTTGGAATTG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 21 0.42
43 27 0.54
44 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
AGACCCTGTCTGGGACAGTGGCATCATATATGATAACATGTA
Found at i:36430267 original size:35 final size:35
Alignment explanation
Indices: 36430228--36430300 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
36430218 GAACGAAAGG
36430228 TAAGTATGTCTATAAATAATGACATGTGAATCTCA
1 TAAGTATGTCTATAAATAATGACATGTGAATCTCA
*
36430263 TAAGTATGTCTATAAATAATGACATGTGAATTTCA
1 TAAGTATGTCTATAAATAATGACATGTGAATCTCA
36430298 TAA
1 TAA
36430301 CAATGTATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (35 bp):
TAAGTATGTCTATAAATAATGACATGTGAATCTCA
Found at i:36436936 original size:40 final size:40
Alignment explanation
Indices: 36436892--36436977 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
36436882 CGGCCGGACC
* *
36436892 ACACACCCATGGGGCAAACCATGTGTCACACACGGTCTAG
1 ACACACCCACGGGGAAAACCATGTGTCACACACGGTCTAG
* *
36436932 ACACACGCACGGGTAAAACCATGTGTCACACACGGTCTAG
1 ACACACCCACGGGGAAAACCATGTGTCACACACGGTCTAG
36436972 ACACAC
1 ACACAC
36436978 GCCCGTGTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.33, G:0.21, T:0.14
Consensus pattern (40 bp):
ACACACCCACGGGGAAAACCATGTGTCACACACGGTCTAG
Found at i:36438026 original size:144 final size:146
Alignment explanation
Indices: 36437761--36438095 Score: 460
Period size: 144 Copynumber: 2.3 Consensus size: 146
36437751 AAGGGTAAGT
* * * *
36437761 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCATATATCAGTGTCGATGCCATGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAATGCCGAGGCCATGTCC
* * * *
36437826 CAAACATGGTCTTATACTGGCTCCTACAACAATGCCGATGCGATGTACGAAACATGGTCTTACAC
66 CAAACATGGTCTTACACTGGCTCATACAACAATGCCGATGCCATGTACCAAACATGGTCTTACAC
*
36437891 TGGCTCACATATTG-A
131 TGGCTCACATATCGAA
* ** * * * *
36437906 GGCTGATGCCATGTCTTAGACACGATCTTACACTAGCTCTCATA-A-CAATGCCGAGGCTATGTT
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAATGCCGAGGCCATGTC
*
36437969 CCAAACATGGTCTTACACTGGCTCATACAACAATGCCGATGCCATGTTCCAAACATGGTCTTACA
65 CCAAACATGGTCTTACACTGGCTCATACAACAATGCCGATGCCATGTACCAAACATGGTCTTACA
*
36438034 TTGGCTCACATATCGAA
130 CTGGCTCACATATCGAA
* *
36438051 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA
36438096 ACCCTAGTAT
Statistics
Matches: 162, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
144 120 0.74
145 7 0.04
146 35 0.22
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (146 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAATGCCGAGGCCATGTCC
CAAACATGGTCTTACACTGGCTCATACAACAATGCCGATGCCATGTACCAAACATGGTCTTACAC
TGGCTCACATATCGAA
Found at i:36438089 original size:48 final size:48
Alignment explanation
Indices: 36437763--36438094 Score: 319
Period size: 48 Copynumber: 6.9 Consensus size: 48
36437753 GGGTAAGTGT
* * * * *
36437763 CGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCATATATCAGTGT
1 CGATGCCATGTCCCAAACATGGTCTTACACT-G-GCTCACATATCAATGC
*
36437813 CGATGCCATGTCCCAAACATGGTCTTATACTGGCTCCTACA-A-CAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCT-C-ACATATCAATGC
* * * ** *
36437861 CGATGCGATGTACGAAACATGGTCTTACACTGGCTCACATATTGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGC
* ** * * * * * *
36437909 TGATGCCATGTCTTAGACACGATCTTACACTAGCTCTCATAACAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGC
* * * * * *
36437957 CGAGGCTATGTTCCAAACATGGTCTTACACTGGCTCATACAACAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGC
* * *
36438005 CGATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAA-GT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATC-AATGC
*
36438053 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAT
36438095 AACCCTAGTA
Statistics
Matches: 227, Mismatches: 50, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
46 3 0.01
47 2 0.01
48 186 0.82
49 5 0.02
50 31 0.14
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGC
Found at i:36440090 original size:21 final size:22
Alignment explanation
Indices: 36440043--36440090 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
36440033 TGATGCTGTT
*
36440043 GTGAATTGTAAATGAAAGACTA
1 GTGAATTGTAAATGAAAGAATA
* **
36440065 TTGAATTG-AAATGCCAGAATA
1 GTGAATTGTAAATGAAAGAATA
36440086 GTGAA
1 GTGAA
36440091 ATCCTTCAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (22 bp):
GTGAATTGTAAATGAAAGAATA
Found at i:36440091 original size:115 final size:115
Alignment explanation
Indices: 36439885--36440115 Score: 435
Period size: 115 Copynumber: 2.0 Consensus size: 115
36439875 ATGAATTCGA
*
36439885 TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAGATGAAAGACTA
1 TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
36439950 TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
66 TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
*
36440000 TGTGATTCTGGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
1 TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
*
36440065 TTGAATTGAAATGCCAGAATAGTGAAATCCTTCAAATTGAATCAGATGAG
66 TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
36440115 T
1 T
36440116 CAAGTGAATT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 113 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (115 bp):
TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
Found at i:36443733 original size:40 final size:40
Alignment explanation
Indices: 36443678--36443859 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
36443668 TATTCGAATG
*
36443678 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
36443718 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
36443758 AAATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
36443798 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
36443838 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36443860 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 15 0.12
40 109 0.87
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36445479 original size:40 final size:40
Alignment explanation
Indices: 36445425--36445618 Score: 300
Period size: 40 Copynumber: 4.9 Consensus size: 40
36445415 GATATAGCTT
*
36445425 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
36445465 CTCGCACAATTGCCTTCGGGAGTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
36445505 CTCGTACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
36445545 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
36445585 CTCGCACAAATGCCTTC-TGAGTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
36445619 CAATCCGAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 14 0.10
40 127 0.90
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:36445534 original size:80 final size:80
Alignment explanation
Indices: 36445398--36445618 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 80
36445388 AAACCAAGTA
** * *
36445398 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
36445461 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * * * *
36445477 CCTTCGGGAGTTAGCCCGGTTATAGTAACTCGTACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
36445542 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* *
36445557 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-TGAGTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
36445619 CAATCCGAAT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 27 0.22
80 97 0.78
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:36453351 original size:38 final size:40
Alignment explanation
Indices: 36453309--36453480 Score: 213
Period size: 39 Copynumber: 4.5 Consensus size: 40
36453299 TCGCTCAATG
36453309 CTTC-GGAC-TAGCCCGGTTATAGTAACTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGC
36453347 CTTCGGGACTTA-CCCGGTTATAGTAACTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGC
* *
36453386 CTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGC
* * *
36453424 CTTCGGGACTTAG-CCGGAT-TAGTCACTC-CGCAATAT-C
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT-TGC
36453461 CTTCGGG-CTTAG-CCGGTTAT
1 CTTCGGGACTTAGCCCGGTTAT
36453481 CATCCGAATA
Statistics
Matches: 122, Mismatches: 6, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
36 10 0.08
37 13 0.11
38 48 0.39
39 49 0.40
40 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGC
Found at i:36453363 original size:39 final size:38
Alignment explanation
Indices: 36453320--36453480 Score: 195
Period size: 38 Copynumber: 4.2 Consensus size: 38
36453310 TTCGGACTAG
36453320 CCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTA
1 CCCGGTTATAGTAACTCGCACAATTGCCTTCGGG-CTTA
36453359 CCCGGTTATAGTAACTCGCACAATTGCCTTCGGGCTTA
1 CCCGGTTATAGTAACTCGCACAATTGCCTTCGGGCTTA
* *
36453397 GCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTA
1 -CCCGGTTATAGTAACTCGCACAATTGCCTTCGGG-CTTA
* * * *
36453436 GCCGGAT-TAGTCACTC-CGCAATAT-CCTTCGGGCTTA
1 CCCGGTTATAGTAACTCGCACAAT-TGCCTTCGGGCTTA
*
36453472 GCCGGTTAT
1 CCCGGTTAT
36453481 CATCCGAATA
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
36 10 0.09
37 13 0.12
38 44 0.40
39 44 0.40
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (38 bp):
CCCGGTTATAGTAACTCGCACAATTGCCTTCGGGCTTA
Found at i:36453415 original size:77 final size:76
Alignment explanation
Indices: 36453309--36453474 Score: 221
Period size: 77 Copynumber: 2.2 Consensus size: 76
36453299 TCGCTCAATG
* * * *
36453309 CTTCGGAC-TAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTACCCGGTTATAGTAA
1 CTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTACCCGGAT-TAGTAA
36453373 CTCGCACAAT-TGC
65 CTC-CACAATAT-C
* *
36453386 CTTCGGGCTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATTAGTCAC
1 CTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTAGTAAC
*
36453450 TCCGCAATATC
66 TCCACAATATC
36453461 CTTCGGGCTTAGCC
1 CTTCGGGCTTAGCC
36453475 GGTTATCATC
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
75 20 0.25
76 9 0.11
77 42 0.52
78 9 0.11
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (76 bp):
CTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTAGTAAC
TCCACAATATC
Found at i:36455141 original size:39 final size:39
Alignment explanation
Indices: 36455029--36455162 Score: 160
Period size: 39 Copynumber: 3.7 Consensus size: 39
36455019 GGCTGTCACA
* * * *
36455029 AAGTTCGGAT-TAATTCTCGCATATAGCCTGCAGACAT-
1 AAGTCCGGATATAATTCTCGCATATAGCCTACGGACCTG
36455066 AAGTCCGG--ATAA--CTC-CATATAG-CTACGGA-CTG
1 AAGTCCGGATATAATTCTCGCATATAGCCTACGGACCTG
*
36455098 AAGTCCGGATATAATTCTCGCTTATAGCCTACGGACCTG
1 AAGTCCGGATATAATTCTCGCATATAGCCTACGGACCTG
36455137 AAGTCCGGATATAATTCTCGCATATA
1 AAGTCCGGATATAATTCTCGCATATA
36455163 TATTCACATG
Statistics
Matches: 82, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
31 1 0.01
32 13 0.16
33 7 0.09
34 7 0.09
36 6 0.07
37 13 0.16
38 7 0.09
39 28 0.34
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (39 bp):
AAGTCCGGATATAATTCTCGCATATAGCCTACGGACCTG
Found at i:36458218 original size:39 final size:39
Alignment explanation
Indices: 36458123--36458380 Score: 300
Period size: 39 Copynumber: 6.6 Consensus size: 39
36458113 TTGAATGATG
*
36458123 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
36458161 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
36458202 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
36458241 TCC-GGCTAAGCCC-AAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36458278 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
36458317 TCCGGGTTAAGTCCCGAA-GCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
36458355 AACCGGGCTATGTCCGAAGGCATTTG
1 -TCCGGGCTAAGCCCGAAGGCATTTG
36458381 AACGAGGAGC
Statistics
Matches: 194, Mismatches: 15, Indels: 20
0.85 0.07 0.09
Matches are distributed among these distances:
37 27 0.14
38 26 0.13
39 111 0.57
40 18 0.09
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36458269 original size:76 final size:77
Alignment explanation
Indices: 36458123--36458380 Score: 298
Period size: 76 Copynumber: 3.3 Consensus size: 77
36458113 TTGAATGATG
* *
36458123 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGG-CTAAG-TCCCAAGGCA
36458184 TTTGTGCGAGATACTAAT
60 TTTGTGCGAGATACTAAT
36458202 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAG-CCCAAGGCATTTGTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGTCCCAAGGCATTTGTG
36458266 CGAGATACTAAT
66 CGAGATACTAAT
* * *
36458278 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAA-GCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCC-GGCTAAGTCCC-AAGGCATTTG
36458342 TGCGA-ATTACT-AT
64 TGCGAGA-TACTAAT
* * *
36458355 AACCGGGCTATGTCCGAAGGCATTTG
1 -TCCGGGCTAAGCCCGAAGGCATTTG
36458381 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
76 66 0.41
77 9 0.06
78 55 0.34
79 20 0.12
80 11 0.07
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGTCCCAAGGCATTTGTG
CGAGATACTAAT
Found at i:36458398 original size:78 final size:77
Alignment explanation
Indices: 36458175--36458412 Score: 236
Period size: 76 Copynumber: 3.1 Consensus size: 77
36458165 GGACTAAGAT
* **
36458175 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAA-GCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
36458239 ATTCCGGCT-AAGC
64 AATCCGGTTAAATC
* ** *
36458252 CC-AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAA-GCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
36458316 ATCCGGGTTAAGTC
65 ATCC-GGTTAAATC
* *
36458330 CCGAAGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAG-GAGCT
1 CCGAAGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGA-CT
* *
36458392 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
36458407 CCGAAG
1 CCGAAG
36458413 GTACGTGATT
Statistics
Matches: 141, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
75 1 0.01
76 63 0.45
77 22 0.16
78 53 0.38
79 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (77 bp):
CCGAAGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
TCCGGTTAAATC
Found at i:36466236 original size:39 final size:40
Alignment explanation
Indices: 36466141--36466363 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
36466131 TTGAATGATG
*
36466141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36466179 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36466220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36466259 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36466298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36466337 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36466364 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36466327 original size:79 final size:81
Alignment explanation
Indices: 36466141--36466363 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
36466131 TTGAATGATG
* * *
36466141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
36466203 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
36466220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
36466281 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
36466298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
36466362 TG
66 TG
36466364 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:36466385 original size:79 final size:79
Alignment explanation
Indices: 36466141--36466396 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
36466131 TTGAATGATG
* * * *
36466141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
36466202 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
36466220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
36466284 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
36466298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
36466361 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
36466378 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36466397 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:36472934 original size:25 final size:25
Alignment explanation
Indices: 36472906--36472984 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
36472896 CTAATGGCTG
36472906 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
36472931 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
36472953 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
36472978 ATGTGAT
1 ATGTGAT
36472985 AAGGCTAATG
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:36472956 original size:47 final size:47
Alignment explanation
Indices: 36472890--36473458 Score: 942
Period size: 47 Copynumber: 12.1 Consensus size: 47
36472880 GAAATGATAG
*
36472890 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36472937 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36472984 TAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
36473032 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
36473079 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36473126 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36473173 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36473220 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36473267 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36473314 TAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36473361 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
36473408 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36473455 TAAG
1 TAAG
36473459 TCCCGAAGGG
Statistics
Matches: 497, Mismatches: 22, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 30 0.06
47 421 0.85
48 16 0.03
49 30 0.06
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36473633 original size:37 final size:37
Alignment explanation
Indices: 36473577--36473655 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
36473567 CCGAGCTCTA
* * *
36473577 AAGACCCGATGACTACGTGTGG-GAATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36473614 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36473651 AAGAC
1 AAGAC
36473656 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36475543 original size:43 final size:43
Alignment explanation
Indices: 36475495--36475640 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
36475485 TTGGTTTTCA
36475495 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
36475538 GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36475581 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36475624 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
36475641 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:36475657 original size:29 final size:29
Alignment explanation
Indices: 36475622--36475695 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
36475612 GTTGTGAGAT
* *
36475622 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36475651 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
36475680 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36475696 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36476133 original size:40 final size:40
Alignment explanation
Indices: 36476010--36476205 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
36476000 TCGAATGATG
** *
36476010 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
36476050 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
36476090 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
36476130 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
36476170 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
36476206 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:36476146 original size:80 final size:81
Alignment explanation
Indices: 36476010--36476206 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
36476000 TCGAATGATG
**
36476010 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
36476072 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
36476090 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
36476154 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
36476170 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
36476207 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:36479745 original size:46 final size:47
Alignment explanation
Indices: 36479598--36480053 Score: 651
Period size: 46 Copynumber: 10.1 Consensus size: 47
36479588 GAAATGATAG
36479598 TAAGGCCTAATGG-CGATGTGATG-ATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36479642 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36479689 T-A-GCCTAATGGCCGATGTGATGAAT-TGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36479733 TAAGGCCTAATGG-CGATGTGATGAATGTG-AAGTG-ATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
36479777 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36479824 TAAGGCCTAATAGCC-ATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36479869 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36479915 TAAGG-CTAATGGCCGATG-GATG-ATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36479958 TAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * * *
36480004 -CGGGCCGAGTGGCCAACGTGATGGATATGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36480050 TAAG
1 TAAG
36480054 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 17, Indels: 29
0.89 0.04 0.07
Matches are distributed among these distances:
43 38 0.10
44 62 0.16
45 117 0.31
46 119 0.31
47 43 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36479809 original size:91 final size:94
Alignment explanation
Indices: 36479598--36480053 Score: 651
Period size: 91 Copynumber: 5.0 Consensus size: 94
36479588 GAAATGATAG
36479598 TAAGGCCTAATGG-CGATGTGATG-ATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
36479660 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
36479689 T-A-GCCTAATGGCCGATGTGATGAAT-TGAAAGTGTATATATGTGATAAGGCCTAATGG-CGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
36479750 GTGATGAATGTG-AAGTG-ATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * *
36479777 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC-AT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
36479841 GTGATGAATGTGAAAGTGTATATATGT-A
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
36479869 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTAATAAGG-CTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
36479932 G-GATG-ATGTG-AAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
** * * * *
36479958 TAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * *
36480021 GTGATGGATATGAAAGTGCATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
36480050 TAAG
1 TAAG
36480054 TCCCGAAGGG
Statistics
Matches: 330, Mismatches: 19, Indels: 31
0.87 0.05 0.08
Matches are distributed among these distances:
88 50 0.15
89 50 0.15
90 67 0.20
91 102 0.31
92 54 0.16
93 7 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36479863 original size:135 final size:138
Alignment explanation
Indices: 36479598--36480001 Score: 668
Period size: 135 Copynumber: 3.0 Consensus size: 138
36479588 GAAATGATAG
36479598 TAAGGCCTAATGGCGATGTGATG-ATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 TAAGGCCTAATGGCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
36479662 GATGAATGTGAAAGTGTATATATGTGAT-A-GCCTAATGGCCGATGTGATGAAT-TGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
36479724 TATATGTGA
131 TATATGT-A
* *
36479733 TAAGGCCTAATGGCGATGTGATGAATGTGAAGTG-ATATGTGTGATAAGGCCTAATAGCCGATGT
1 TAAGGCCTAATGGCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
36479797 GATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC-ATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
36479861 TATATGTA
131 TATATGTA
*
36479869 TAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTATATATGTAATAAGG-CTAATGGCCGATG
1 TAAGGCCTAATGG-CGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
36479933 -GATG-ATGTG-AAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGT
65 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
36479994 ATATATGT
130 ATATATGT
36480002 GACGGGCCGA
Statistics
Matches: 253, Mismatches: 9, Indels: 15
0.91 0.03 0.05
Matches are distributed among these distances:
133 8 0.03
134 49 0.19
135 83 0.33
136 40 0.16
137 60 0.24
138 13 0.05
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (138 bp):
TAAGGCCTAATGGCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTA
Found at i:36480228 original size:37 final size:37
Alignment explanation
Indices: 36480172--36480250 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36480162 CCGAGCTCTA
* *
36480172 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36480209 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36480246 AAGAC
1 AAGAC
36480251 TTCGTAATAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36492871 original size:21 final size:20
Alignment explanation
Indices: 36492847--36492889 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
36492837 AAACTTGTAT
* *
36492847 ATCTATCAACAAGCATTCATA
1 ATCTACCAACAA-AATTCATA
*
36492868 ATCTACCAAGAAAATTCATA
1 ATCTACCAACAAAATTCATA
36492888 AT
1 AT
36492890 ACATATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (20 bp):
ATCTACCAACAAAATTCATA
Found at i:36494521 original size:13 final size:13
Alignment explanation
Indices: 36494463--36494524 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
36494453 TTTACATCTC
*
36494463 AAAAAAT-TATAA
1 AAAAAATATATAT
36494475 AAAAGAATTATATAT
1 AAAA-AA-TATATAT
*
36494490 AAAAATTATAAATTAT
1 AAAAA--ATATA-TAT
36494506 AAAAAATATATAT
1 AAAAAATATATAT
36494519 AAAAAA
1 AAAAAA
36494525 CAAGCCCTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
12 4 0.10
13 11 0.27
14 6 0.15
15 11 0.27
16 9 0.22
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (13 bp):
AAAAAATATATAT
Found at i:36498077 original size:29 final size:29
Alignment explanation
Indices: 36498011--36498077 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
36498001 TGGTTGGACT
* * *
36498011 AAATTTAAAAAAAGAGAGTCATTTTTTAA
1 AAATTTATAAAAAGAGAGTCAATTTTAAA
*
36498040 AAATATTATAAAAATAGA-TCAAATTTTAAA
1 AAAT-TTATAAAAAGAGAGTC-AATTTTAAA
36498070 AAATTTAT
1 AAATTTAT
36498078 TAGAATAAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 10 0.31
30 22 0.69
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (29 bp):
AAATTTATAAAAAGAGAGTCAATTTTAAA
Found at i:36503264 original size:40 final size:40
Alignment explanation
Indices: 36503219--36503410 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
36503209 ATAACCACAA
* *
36503219 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
36503259 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
** * * *
36503299 GCACAAATGCCTTCGGGTCTTAGGCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
36503339 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
36503379 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
36503411 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:36503303 original size:80 final size:80
Alignment explanation
Indices: 36503190--36503409 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 80
36503180 ACCCAAGTTT
* * * * * * * * *
36503190 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
36503253 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * * *
36503269 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGGCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
36503333 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
36503349 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
36503410 TCATTCAAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 12 0.10
80 96 0.83
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:36511438 original size:39 final size:40
Alignment explanation
Indices: 36511336--36511444 Score: 159
Period size: 40 Copynumber: 2.8 Consensus size: 40
36511326 ATAACCACAA
* * *
36511336 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
36511376 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCTACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
36511416 GCACAAA-GCCTTCGGGTCTTAG-CCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
36511445 ATCATAGCAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 7 0.11
39 15 0.23
40 42 0.66
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:36521735 original size:30 final size:30
Alignment explanation
Indices: 36521701--36521757 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
36521691 GTCTCAACCG
36521701 TGTGTGACACACGGTTAGGTTACACGGTCA
1 TGTGTGACACACGGTTAGGTTACACGGTCA
36521731 TGTGTGACACACGGTTAGGTTACACGG
1 TGTGTGACACACGGTTAGGTTACACGG
36521758 CCGTGTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (30 bp):
TGTGTGACACACGGTTAGGTTACACGGTCA
Found at i:36522869 original size:46 final size:46
Alignment explanation
Indices: 36522816--36522988 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
36522806 TGGTTGAGCA
*
36522816 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
36522862 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
36522909 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
36522955 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36522989 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 62 0.59
47 28 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:36522972 original size:93 final size:93
Alignment explanation
Indices: 36522813--36522983 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
36522803 GGATGGTTGA
*** *
36522813 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
36522878 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
36522906 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
36522971 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36522984 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36529989 original size:46 final size:46
Alignment explanation
Indices: 36529939--36530107 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
36529929 TGAGCATCCG
*
36529939 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCA
* * * * * *
36529985 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCCT
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCA
* * *
36530032 AACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACG-CTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CA
*
36530078 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
36530108 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 55 0.56
47 27 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCA
Found at i:36530091 original size:93 final size:93
Alignment explanation
Indices: 36529932--36530102 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
36529922 GGATGGTTGA
*
36529932 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAGT
36529997 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * * *
36530025 GCATCCTAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CAAACTCGTTGAG
36530089 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
36530103 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36534471 original size:12 final size:12
Alignment explanation
Indices: 36534454--36534487 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
36534444 GAGATTTTGA
36534454 TAATGTTCATGC
1 TAATGTTCATGC
36534466 TAATGTTCATGC
1 TAATGTTCATGC
*
36534478 TAATATTCAT
1 TAATGTTCAT
36534488 CATGTTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (12 bp):
TAATGTTCATGC
Found at i:36535895 original size:4 final size:4
Alignment explanation
Indices: 36535870--36536657 Score: 783
Period size: 4 Copynumber: 202.5 Consensus size: 4
36535860 TGGAGGACAG
* *
36535870 GTAT GTAT GCAT GTAT GCAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
** ** *
36535918 GTAT GTAT GTAT GTAT GTAT ACAT GTAT GTAT GTAT ACAT GTAT GCAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
36535966 GCAT GGAT GTAT GTAT GCAT GTAT GCAT GTA- -TAT GCAT GCAT GGAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * *
36536012 GTAT GCAT GCAT GGAT GTAT GCAT GCAT GTAT GTAT GTAT GTAT GCAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
36536060 GTAT GGAT GTAT GCAT GCAT GCAT GCAT GTAT GTAT GTAT GCAT GCAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
36536108 GCAT GTAT GTAT G--T GTAT GCAT GTAT GTAT G--T GTAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
36536152 GTAT GTAT ATAT GTAT GTAT GTAT GTAT GTAT GCAT GTAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * *
36536200 GCAT GTAT GCAT GTAT GCAT GTA- -TAT GCAT GTAT GCAT GTA- -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * *
36536244 GTAT GTAT GTAT GCAT GTAT GCAT GTAT GCAT GTAT GCAT GTAT GCAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
36536292 GTAT GGAT GTA- -TAT GTAT GTAT GTAT GTAT GCAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * **
36536338 GCAT GTAT GCAT GTAT GTAT GTAT GTAT ATAT GTAT ACAT GTA- -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
36536384 GCAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GCAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * *
36536432 GCAT GTA- -TAT GCAT GTAT GTAT GCAT GTAT GCAT GTAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * *
36536478 GCAT GTAT GCAT GTA- -TAT GCAT GTAT GCAT GTA- -TAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
36536522 GCAT GCAT GTAT GTAT GCAT GTAT GCAT GCAT GTAT GCAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
36536570 GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
36536616 GTAT GTAT GTAG GTAT GTAT GTAT GTAT GTAT GCAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
36536658 TTAGATATGA
Statistics
Matches: 647, Mismatches: 115, Indels: 44
0.80 0.14 0.05
Matches are distributed among these distances:
2 22 0.03
4 625 0.97
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.42
Consensus pattern (4 bp):
GTAT
Found at i:36538051 original size:26 final size:26
Alignment explanation
Indices: 36538022--36538079 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
36538012 TAATTTAATA
* *
36538022 TAAAATA-ATTATATTAAGAATGTTAT
1 TAAAATATATT-TAATAAGAATCTTAT
* *
36538048 TAAATTATATTTAATAATAATCTTAT
1 TAAAATATATTTAATAAGAATCTTAT
36538074 TAAAAT
1 TAAAAT
36538080 TTAATAACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (26 bp):
TAAAATATATTTAATAAGAATCTTAT
Found at i:36538224 original size:44 final size:46
Alignment explanation
Indices: 36538161--36538252 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 46
36538151 CTATTACATA
* * *
36538161 TCTATTCCATTTAACCAAACACAAT-AA-TAC-TATTACAATTCTAT
1 TCTATTACATTCAACCAAACA-AATGAATTACTTATTACAACTCTAT
*
36538205 TCTATTACATTCAACCAAACAATTGAATTACTTATTACAACTCTAT
1 TCTATTACATTCAACCAAACAAATGAATTACTTATTACAACTCTAT
36538251 TC
1 TC
36538253 CACTATAGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 21 0.51
45 3 0.07
46 15 0.37
ACGTcount: A:0.39, C:0.23, G:0.01, T:0.37
Consensus pattern (46 bp):
TCTATTACATTCAACCAAACAAATGAATTACTTATTACAACTCTAT
Found at i:36543325 original size:16 final size:17
Alignment explanation
Indices: 36543297--36543328 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
36543287 TTTATTTTCA
36543297 TATTTGATAAATACAAT
1 TATTTGATAAATACAAT
36543314 TATTTG-TAAATACAA
1 TATTTGATAAATACAA
36543329 CATGTAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (17 bp):
TATTTGATAAATACAAT
Done.