Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 112 of 373
Found at i:36751156 original size:23 final size:22
Alignment explanation
Indices: 36751109--36751187 Score: 69
Period size: 22 Copynumber: 3.7 Consensus size: 22
36751099 CATTAATTAC
*
36751109 TTATTTTATAT-TATTCTA-AA
1 TTATTTTATATATATTATATAA
36751129 CTTATATTTATATATATTATATAA
1 -TTAT-TTTATATATATTATATAA
*
36751153 TTATTTTAT-TATA-AATATAA
1 TTATTTTATATATATTATATAA
* *
36751173 TT-TTTTTTACATATT
1 TTATTTTATATATATT
36751188 TGGTATTTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 5 0.10
20 11 0.23
21 8 0.17
22 12 0.25
23 10 0.21
24 2 0.04
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (22 bp):
TTATTTTATATATATTATATAA
Found at i:36751276 original size:18 final size:17
Alignment explanation
Indices: 36751218--36751276 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
36751208 TTCTAAACCA
*
36751218 ATATATATTTTTATTTT
1 ATATAAATTTTTATTTT
*
36751235 ATATATAATTATTATTCTT
1 ATATA-AATTTTTATT-TT
* *
36751254 TTATAAATTTTTGTTATT
1 ATATAAATTTTTATT-TT
36751272 ATATA
1 ATATA
36751277 TTATATATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
17 5 0.15
18 22 0.67
19 6 0.18
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
ATATAAATTTTTATTTT
Found at i:36751316 original size:24 final size:25
Alignment explanation
Indices: 36751283--36751329 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
36751273 TATATTATAT
36751283 ATTATATTAAATA-C-TATTTTAAA
1 ATTATATTAAATATCATATTTTAAA
36751306 ATTATTATTAAATATCATATTTTA
1 ATTA-TATTAAATATCATATTTTA
36751330 TTTGTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 9 0.43
25 1 0.05
26 7 0.33
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTATATTAAATATCATATTTTAAA
Found at i:36752859 original size:98 final size:99
Alignment explanation
Indices: 36752684--36752927 Score: 312
Period size: 99 Copynumber: 2.5 Consensus size: 99
36752674 TACTGTATAT
* * ** *
36752684 CAAGTACGCCACATAATATGTTAACACTTTTCATACCTAATTCATTCCCATTCATTTTCAATATA
1 CAAGTACGCAACATAATATGTTAACACTTTT-ATACCTGATTCATTTTCATTCATTTTCAACATA
* * * * *
36752749 ATAAGTGTAGACAC-TTATCGATCATATGGAATAA
65 ATAAGTGAAGACACTTTAGCAATCACATAGAATAA
* **
36752783 CAAGTACGCAACATAATATGTTAATACTTTTATACCTGATTCATTTTCATTCATTTTTGACATAA
1 CAAGTACGCAACATAATATGTTAACACTTTTATACCTGATTCATTTTCATTCATTTTCAACATAA
36752848 TAAGTGAAGACACTTTAGCAATCACATAGAATAA
66 TAAGTGAAGACACTTTAGCAATCACATAGAATAA
* * * *
36752882 CAAGTATGCAACATGATATGTTAACACTTTCATATCTGATT-ATTTT
1 CAAGTACGCAACATAATATGTTAACACTTTTATACCTGATTCATTTT
36752928 ATAAAACCTG
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 45 0.36
99 81 0.64
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (99 bp):
CAAGTACGCAACATAATATGTTAACACTTTTATACCTGATTCATTTTCATTCATTTTCAACATAA
TAAGTGAAGACACTTTAGCAATCACATAGAATAA
Found at i:36753584 original size:29 final size:29
Alignment explanation
Indices: 36753542--36753599 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
36753532 CATTTTCACT
* *
36753542 ACTTAATACAATGTTGGTAGCTCTAGCAA
1 ACTTAATACAATGTGGGTAGATCTAGCAA
36753571 ACTTAATACAATGTGGGTAGATCTAGCAA
1 ACTTAATACAATGTGGGTAGATCTAGCAA
36753600 TAGTCTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (29 bp):
ACTTAATACAATGTGGGTAGATCTAGCAA
Found at i:36756333 original size:24 final size:24
Alignment explanation
Indices: 36756306--36756351 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
36756296 TTATATTAAA
36756306 TTATATTA-AAAATTTTAAAATATT
1 TTAT-TTACAAAATTTTAAAATATT
* *
36756330 TTATTTACTACATTTTAAAATA
1 TTATTTACAAAATTTTAAAATA
36756352 ATACACTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATTTACAAAATTTTAAAATATT
Found at i:36758280 original size:22 final size:22
Alignment explanation
Indices: 36758252--36758295 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
36758242 GTAAAACAAT
*
36758252 ATTCAAATCAGCTCGTACCAAG
1 ATTCAAATCAGCTCGGACCAAG
36758274 ATTCAAATCAGCTCGGACCAAG
1 ATTCAAATCAGCTCGGACCAAG
36758296 GTTCTACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.20
Consensus pattern (22 bp):
ATTCAAATCAGCTCGGACCAAG
Found at i:36761425 original size:43 final size:44
Alignment explanation
Indices: 36761377--36761470 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
36761367 TCCTAATTGG
36761377 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
36761420 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
*
36761464 AAAAATA
1 GAAAATA
36761471 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
43 40 0.85
44 7 0.15
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:36766193 original size:43 final size:44
Alignment explanation
Indices: 36766124--36766216 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
36766114 TCCTAATTGG
36766124 GAAAATAGTTCCCTTAGTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTAGTCTAATAAACTACTAAAACATAAAATA
* * *
36766167 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTAGTCTAATAAACTACTAAAACATAAAATA
36766211 -AAAATA
1 GAAAATA
36766217 TTTCTAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.27
Consensus pattern (44 bp):
GAAAATAGTTCCCTTAGTCTAATAAACTACTAAAACATAAAATA
Found at i:36767776 original size:15 final size:15
Alignment explanation
Indices: 36767756--36767786 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36767746 CTCCAATAAC
36767756 CCTTGCAACCAATGG
1 CCTTGCAACCAATGG
36767771 CCTTGCAACCAATGG
1 CCTTGCAACCAATGG
36767786 C
1 C
36767787 AGTCCTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.35, G:0.19, T:0.19
Consensus pattern (15 bp):
CCTTGCAACCAATGG
Found at i:36772907 original size:17 final size:17
Alignment explanation
Indices: 36772881--36772918 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
36772871 TAGAAATTTC
36772881 AAATATTTTTAAATTAAA
1 AAATATTTTTAAA-TAAA
36772899 AAATATTTTTAAATAAA
1 AAATATTTTTAAATAAA
36772916 AAA
1 AAA
36772919 GGATCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATTTTTAAATAAA
Found at i:36773690 original size:30 final size:30
Alignment explanation
Indices: 36773656--36773717 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
36773646 TATTTTTTTA
* *
36773656 TTAATTTTGTTATTATTTTAAAGATATTTG
1 TTAATTTTATTATTATCTTAAAGATATTTG
* *
36773686 TTAATTTTATTATTATCTTAGAGGTATTTG
1 TTAATTTTATTATTATCTTAAAGATATTTG
36773716 TT
1 TT
36773718 TGTTAAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.60
Consensus pattern (30 bp):
TTAATTTTATTATTATCTTAAAGATATTTG
Found at i:36774078 original size:22 final size:22
Alignment explanation
Indices: 36774053--36774095 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
36774043 TATCCAAACA
36774053 ATAACA-ATAAAATAGTAGCAAC
1 ATAACAGA-AAAATAGTAGCAAC
* *
36774075 ATAATAGAAAAATGGTAGCAA
1 ATAACAGAAAAATAGTAGCAA
36774096 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.19
Consensus pattern (22 bp):
ATAACAGAAAAATAGTAGCAAC
Found at i:36776576 original size:46 final size:46
Alignment explanation
Indices: 36776485--36776609 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 46
36776475 TGGGTAAGGT
*
36776485 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTAACATCTCG-AG
* *
36776533 GCCGATGCATCTCCCAGACATGTCTTACACTGGCTTAAC-TCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TAACATCTCGAG
* * * *
36776579 GCTGATGCATGTCCTAAACATGTCATACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
36776610 AGCTCTCGTC
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 43 0.64
47 16 0.24
48 7 0.10
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTAACATCTCGAG
Found at i:36781926 original size:93 final size:93
Alignment explanation
Indices: 36781767--36781938 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
36781757 GCCCATAAGT
* * *
36781767 GAACTCGGACTAAACTTAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTAAACTCAACGAGCTAGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36781832 CGAGCTCGGATGCCTAGTAACATCTCTC
66 CGAGCTCGGATGCCTAGTAACATCTCTC
* *
36781860 GAACTCGGACTCAACTCAACGAGTTTAGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTAAACTCAACGAG-CTAGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
36781924 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
36781939 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.96
94 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTAAACTCAACGAGCTAGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTAACATCTCTC
Found at i:36781930 original size:46 final size:45
Alignment explanation
Indices: 36781759--36781928 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
36781749 TGTAACCCGC
* * *
36781759 CCATAAGTGAACTCGGACTAAACTTAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGA-CATTCGCAT
* *
36781805 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACATTCGC-A-T
* *** * *
36781850 AACATCTCTCGAACTCGGACTCAACTCAACGAGTTTAGACATTCGCAT
1 -CCATAAGT-GAACTCGGACTCAACTCAACGAG-CTCGACATTCGCAT
36781898 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
36781929 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 60 0.60
47 27 0.27
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACATTCGCAT
Found at i:36781953 original size:46 final size:45
Alignment explanation
Indices: 36781810--36781953 Score: 109
Period size: 46 Copynumber: 3.1 Consensus size: 45
36781800 CGCATCCATA
* *
36781810 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTAACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AA-ATC-CT
* * * * *
36781859 --CGAACTCGGACTCAACTCAACGAGTTTAGACATTCGC---ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCG-GATGCCCAAAATCC-T
36781902 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAA-ATCCT
36781949 AGTGA
1 AGTGA
36781954 CATGTCACTT
Statistics
Matches: 73, Mismatches: 12, Indels: 23
0.68 0.11 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 3 0.04
46 28 0.38
47 24 0.33
48 6 0.08
49 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAAATCCT
Found at i:36784042 original size:46 final size:46
Alignment explanation
Indices: 36783975--36784149 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
36783965 TGTAACCCGC
36783975 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
36784021 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
36784071 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
36784114 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
36784150 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:36784094 original size:93 final size:93
Alignment explanation
Indices: 36783982--36784153 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
36783972 CGCCCATAAG
* * *
36783982 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
36784047 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
36784075 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36784140 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
36784154 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:36790896 original size:46 final size:48
Alignment explanation
Indices: 36790774--36790903 Score: 155
Period size: 47 Copynumber: 2.8 Consensus size: 48
36790764 TGTAACCCGC
36790774 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* *
36790824 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
* *
36790867 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36790904 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 28 0.39
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:36790922 original size:46 final size:44
Alignment explanation
Indices: 36790782--36790922 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 44
36790772 GCCCATAAGC
*
36790782 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
36790829 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
36790875 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
36790921 GA
1 GA
36790923 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.41
47 31 0.40
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:36793895 original size:30 final size:30
Alignment explanation
Indices: 36793852--36793940 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
36793842 CAAAGGTAAC
36793852 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
36793881 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * *
36793911 AAGAGATCCAGGATAAAG-AATCCCAAGATA
1 AAGAAAACCAGAATAAAGAAAT-CCAAGATA
36793941 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 12 0.24
30 36 0.72
31 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:36793900 original size:15 final size:15
Alignment explanation
Indices: 36793852--36793930 Score: 90
Period size: 15 Copynumber: 5.3 Consensus size: 15
36793842 CAAAGGTAAC
*
36793852 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
36793866 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
36793881 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
36793896 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
36793911 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
36793926 AAGAA
1 AAGAA
36793931 TCCCAAGATA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:36793940 original size:15 final size:14
Alignment explanation
Indices: 36793863--36793940 Score: 59
Period size: 15 Copynumber: 5.2 Consensus size: 14
36793853 AGAAAACCGA
36793863 ATAAAGAAATCCAAG
1 ATAAAG-AATCCAAG
* * *
36793878 ATAGAGAAACCCAG
1 ATAAAGAATCCAAG
36793892 AATAAAGAAATCC-AG
1 -ATAAAG-AATCCAAG
*
36793907 AATAAAGAGATCCAGG
1 -ATAAAGA-ATCCAAG
36793923 ATAAAGAATCCCAAG
1 ATAAAGAAT-CCAAG
36793938 ATA
1 ATA
36793941 CGATACTATG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
14 9 0.18
15 37 0.73
16 5 0.10
ACGTcount: A:0.55, C:0.15, G:0.17, T:0.13
Consensus pattern (14 bp):
ATAAAGAATCCAAG
Found at i:36796969 original size:46 final size:45
Alignment explanation
Indices: 36796902--36797076 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
36796892 TGTAACCCGC
36796902 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
36796948 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * * * *
36796994 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
36797041 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36797077 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:36797022 original size:93 final size:93
Alignment explanation
Indices: 36796910--36797081 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
36796900 GCCCATAAGT
* * * * *
36796910 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36796975 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
36797003 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
36797068 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
36797082 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:36801616 original size:47 final size:48
Alignment explanation
Indices: 36801545--36801762 Score: 229
Period size: 47 Copynumber: 4.6 Consensus size: 48
36801535 TAGGTATGGT
* *
36801545 GCCGATGCCATGTCCCAAACATGGTCTTAGACTAGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
* * **
36801592 GTCGATGCCATGTCCCAGACATGGTCTTACA-TTGACT-ATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATC-TCAA
* * * *
36801640 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTAT-GTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AA
*
36801686 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
*
36801731 TGTCGATGCCATGTCCCAGACATGGTCTTACA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACA
36801763 ATGCCTCTCA
Statistics
Matches: 144, Mismatches: 17, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
45 3 0.02
46 61 0.42
47 64 0.44
48 16 0.11
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
Found at i:36801805 original size:140 final size:141
Alignment explanation
Indices: 36801545--36801814 Score: 393
Period size: 140 Copynumber: 1.9 Consensus size: 141
36801535 TAGGTATGGT
*
36801545 GCCGATGCCATGTCCCAAACATGGTCTTAGACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
* ** *
36801610 ACATGGTCTTACATTGACTATCATCTTGTAGCCGATGCATGTCCTAGACATGTCTTACACTAGCT
66 ACATGGTCTTACAATGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
36801675 TATGTCTCGAG
131 TATGTCTCGAG
* *
36801686 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATCTCAA-GTCGATGCCATGTCCC
* * * * *
36801748 AGACATGGTCTTACAATGCCTCTCATAATGTGGTCGATGCATGTCCCAGATATGTCTTACACTAG
64 AGACATGGTCTTACAATGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTAG
36801813 CT
129 CT
36801815 CACAAACAAA
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
138 1 0.01
139 20 0.17
140 87 0.76
141 7 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACAATGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
TATGTCTCGAG
Found at i:36803104 original size:19 final size:19
Alignment explanation
Indices: 36803080--36803118 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36803070 AGCTATGGAG
36803080 AATGGAGAAATCCCAAGAA
1 AATGGAGAAATCCCAAGAA
*
36803099 AATGGAGAAATCCTAAGAA
1 AATGGAGAAATCCCAAGAA
36803118 A
1 A
36803119 TGCCAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.13, G:0.21, T:0.13
Consensus pattern (19 bp):
AATGGAGAAATCCCAAGAA
Found at i:36803431 original size:5 final size:5
Alignment explanation
Indices: 36803423--36803461 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
36803413 AAGTGATGTG
*
36803423 AAAAT AAAAT AAAAT AAAAT AAAACT AAACT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAA
36803462 GAACATACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:36803456 original size:16 final size:15
Alignment explanation
Indices: 36803423--36803461 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
36803413 AAGTGATGTG
36803423 AAAATAAAATAAAAT
1 AAAATAAAATAAAAT
*
36803438 AAAATAAAACTAAACT
1 AAAATAAAA-TAAAAT
36803454 AAAATAAA
1 AAAATAAA
36803462 GAACATACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:36807861 original size:5 final size:5
Alignment explanation
Indices: 36807844--36807881 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
36807834 CATATTTATG
*
36807844 AAAAT AAAA- AAAAT AAAAT AAAACT AATAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAA
36807882 GAACATACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.14
5 21 0.72
6 4 0.14
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:36807863 original size:14 final size:15
Alignment explanation
Indices: 36807844--36807881 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
36807834 CATATTTATG
36807844 AAAATAAAA-AAAAT
1 AAAATAAAACAAAAT
*
36807858 AAAATAAAACTAATAT
1 AAAATAAAAC-AAAAT
36807874 AAAATAAA
1 AAAATAAA
36807882 GAACATACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
16 12 0.57
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATAAAACAAAAT
Found at i:36812678 original size:43 final size:43
Alignment explanation
Indices: 36812617--36812829 Score: 234
Period size: 43 Copynumber: 5.0 Consensus size: 43
36812607 ATTTATGTGA
36812617 ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCCCT
1 ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCCCT
* * *
36812660 ACAAATGCCGCTACAGAACATGACCTTTAGCGACACTTTCTCC-
1 ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTC-CCT
* * * *
36812703 ACAAACGCCGCTAAAGAACTTGACTTTTA-CCAGTGCTTT-CCT
1 ACAAACGCCGCTAAAGAACATGACCTTTAGCGA-CGCTTTCCCT
* * * * *
36812745 AAAAACACCGCTAAAGAACATGACCTTTAGCGGCGCTCTCTCT
1 ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCCCT
* * * * *
36812788 ATAAACGTCGCTAAAAAACTTGACTTTTAGCGACGCTTTCCC
1 ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCCC
36812830 AAAAAGGCCA
Statistics
Matches: 137, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.01
42 31 0.23
43 102 0.74
44 2 0.01
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (43 bp):
ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCCCT
Found at i:36812844 original size:85 final size:85
Alignment explanation
Indices: 36812617--36812866 Score: 270
Period size: 85 Copynumber: 2.9 Consensus size: 85
36812607 ATTTATGTGA
* * * * *
36812617 ACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCCCTACAAATGCCGCTACAGAACATG
1 ACAAACGCCGCTAAAGAACTTGACTTTTAGCGACGCTTTCCC-AAAAACGCCGCTAAAGAACATG
* * *
36812682 ACCTTTAGCGACACTTTCTCC
65 ACCTTTAGCGGCGCTCTCTCC
* * * *
36812703 ACAAACGCCGCTAAAGAACTTGACTTTTA-CCAGTGCTTTCCTAAAAACACCGCTAAAGAACATG
1 ACAAACGCCGCTAAAGAACTTGACTTTTAGCGA-CGCTTTCCCAAAAACGCCGCTAAAGAACATG
*
36812767 ACCTTTAGCGGCGCTCTCTCT
65 ACCTTTAGCGGCGCTCTCTCC
* * * * * *
36812788 ATAAACGTCGCTAAAAAACTTGACTTTTAGCGACGCTTTCCCAAAAAGGCCACTAAA-AGTCATG
1 ACAAACGCCGCTAAAGAACTTGACTTTTAGCGACGCTTTCCCAAAAACGCCGCTAAAGA-ACATG
**
36812852 TTCTTTAGCGGCGCT
65 ACCTTTAGCGGCGCT
36812867 TTTCTCAAAA
Statistics
Matches: 136, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
84 1 0.01
85 99 0.73
86 36 0.26
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (85 bp):
ACAAACGCCGCTAAAGAACTTGACTTTTAGCGACGCTTTCCCAAAAACGCCGCTAAAGAACATGA
CCTTTAGCGGCGCTCTCTCC
Found at i:36812859 original size:42 final size:43
Alignment explanation
Indices: 36812813--36812894 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
36812803 AAACTTGACT
36812813 TTTAGCGACGC-TTTCCCAAAAAGGCCACTAAAAGTCATGTTC
1 TTTAGCGACGCTTTTCCCAAAAAGGCCACTAAAAGTCATGTTC
* * * *
36812855 TTTAGCGGCGCTTTTCTCAAAAATGCCACTAAAGGTCATG
1 TTTAGCGACGCTTTTCCCAAAAAGGCCACTAAAAGTCATG
36812895 AAAAATAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 10 0.29
43 25 0.71
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
TTTAGCGACGCTTTTCCCAAAAAGGCCACTAAAAGTCATGTTC
Found at i:36813557 original size:23 final size:23
Alignment explanation
Indices: 36813524--36814066 Score: 311
Period size: 23 Copynumber: 23.7 Consensus size: 23
36813514 TTTCATCAAC
* *
36813524 TAAACAATTCAATTTGCAATACT
1 TAAACACTTCAATTTGCAACACT
* * *
36813547 TAAAAACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAACACT
* *
36813570 TAAACACTTCAATTTGTAGCACT
1 TAAACACTTCAATTTGCAACACT
* * * *
36813593 TTAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTGCAACACT
*
36813616 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTGCAACACT
* ** *
36813639 TTAACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTGCAACACT
* * * * *
36813662 TATACACCTCAA-CTACAGCGA-T
1 TAAACACTTCAATTTGCAAC-ACT
* *
36813684 AAAACA-TCTCAATTT-CTAGCAGC-
1 TAAACACT-TCAATTTGC-AACA-CT
**
36813707 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTGCAACACT
* * *
36813730 TAAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTGCAACACT
* *
36813753 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAACACT
*
36813776 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTGCAACACT
* * * *
36813799 TTAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTGCAACACT
* *
36813822 TAAACACTTCAATTTACAGCACT
1 TAAACACTTCAATTTGCAACACT
* ** *
36813845 TTAACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTGCAACACT
* * * *
36813868 TATACACCTCAA-TTACAGCGA-T
1 TAAACACTTCAATTTGCAAC-ACT
* * *
36813890 AAAACA-TCTCAATTTCCAGCAGC-
1 TAAACACT-TCAATTTGCAACA-CT
** *
36813913 TAAACACTTCAATTTGCAGTACG
1 TAAACACTTCAATTTGCAACACT
* *
36813936 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAACACT
* * *
36813959 TAAGCACTTCAATTTACATCA-T
1 TAAACACTTCAATTTGCAACACT
* *
36813981 ATAAACACTTCAATTTACAGCA-T
1 -TAAACACTTCAATTTGCAACACT
* *
36814004 TTAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTGCAACACT
* * ** *
36814027 TTAACACTTCAATTTACAGTATT
1 TAAACACTTCAATTTGCAACACT
*
36814050 TAAACACTTTAATTTGC
1 TAAACACTTCAATTTGC
36814067 TGCACTTTCA
Statistics
Matches: 417, Mismatches: 81, Indels: 44
0.77 0.15 0.08
Matches are distributed among these distances:
22 54 0.13
23 360 0.86
24 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.33
Consensus pattern (23 bp):
TAAACACTTCAATTTGCAACACT
Found at i:36813884 original size:137 final size:137
Alignment explanation
Indices: 36813526--36814074 Score: 442
Period size: 137 Copynumber: 4.0 Consensus size: 137
36813516 TCATCAACTA
* * * * * * * *** *
36813526 AACAATTCAATTTGCAATACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGTAGCA
1 AACACTTCAATTTACAACATTTAAACACTTCAATTTACAGCATATAAACACTTCAATTAACAACA
* * *
36813591 CTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTT-AACA-TCTCAATTA
66 -TTTAACACCTCAATTTACAGCATTTAAACACTTCAATTTACAGCA-TTTAAACACT-TCAATTT
* *
36813654 ACAACA-TTT
128 GCAGCACTTT
* * * * ** **
36813663 ATACACCTCAA-CTACAGCGA-TAAAACA-TCTCAATTT-CTAGCAGCTAAACACTTCAATTTGC
1 A-ACACTTCAATTTACAAC-ATTTAAACACT-TCAATTTAC-AGCATATAAACACTTCAATTAAC
* * * * *
36813724 AGTAC-TTAAACACTTTAATTTACAACATTTAAACACTTCAATTTACAACATTTAAACACTTCAA
62 A--ACATTTAACACCTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAAACACTTCAA
36813788 TTTGCAGCACTTT
125 TTTGCAGCACTTT
* *
36813801 AACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCACT-TTAACA-TCTCAATTAACAA
1 AACACTTCAATTTACAACATTTAAACACTTCAATTTACAGCA-TATAAACACT-TCAATTAACAA
* * **
36813864 CATTTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCAGCAGCTAAACACTTCAAT
64 CATTTA-ACACCTCAATTTACAGC-ATTTAAACACT-TCAATTTACAGCATTTAAACACTTCAAT
* * *
36813926 TTGCAGTACGTA
126 TTGCAGCACTTT
* * * *
36813938 AACACTTCAATTTACAACATTTAAGCACTTCAATTTACATCATATAAACACTTCAATTTACAGCA
1 AACACTTCAATTTACAACATTTAAACACTTCAATTTACAGCATATAAACACTTCAATTAACAACA
* * * *
36814003 TTTAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAGTATTTAAACACTTTAATTTGC
66 TTTAACACCTCAATTTACAGCA-TTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGC
*
36814067 TGCACTTT
130 AGCACTTT
36814075 CATACCTTCA
Statistics
Matches: 329, Mismatches: 58, Indels: 50
0.75 0.13 0.11
Matches are distributed among these distances:
136 18 0.05
137 248 0.75
138 60 0.18
139 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (137 bp):
AACACTTCAATTTACAACATTTAAACACTTCAATTTACAGCATATAAACACTTCAATTAACAACA
TTTAACACCTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCA
GCACTTT
Found at i:36813913 original size:206 final size:206
Alignment explanation
Indices: 36813524--36814045 Score: 877
Period size: 206 Copynumber: 2.5 Consensus size: 206
36813514 TTTCATCAAC
* * * * * *
36813524 TAAACAATTCAATTTGCAATACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGTAG
1 TAAACACTTCAATTTACAACATTTAAACACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
*
36813589 CACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTA
66 CACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCACTTTAACATCTCAATTA
*
36813654 ACAACATTTATACACCTCAACTACAGCGATAAAACATCTCAATTTCTAGCAGCTAAACACTTCAA
131 ACAACATTTATACACCTCAACTACAGCGATAAAACATCTCAATTTCCAGCAGCTAAACACTTCAA
*
36813719 TTTGCAGTACT
196 TTTGCAGTACG
*
36813730 TAAACACTTTAATTTACAACATTTAAACACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
1 TAAACACTTCAATTTACAACATTTAAACACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
36813795 CACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCACTTTAACATCTCAATTA
66 CACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCACTTTAACATCTCAATTA
*
36813860 ACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAGCTAAACACTTCAA
131 ACAACATTTATACACCTCAACTACAGCGATAAAACATCTCAATTTCCAGCAGCTAAACACTTCAA
36813925 TTTGCAGTACG
196 TTTGCAGTACG
* * * *
36813936 TAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACATCATATAAACACTTCAATTTACAG
1 TAAACACTTCAATTTACAACATTTAAACACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
*
36814001 CA-TTTAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAG
66 CACTTTAACACTTCAATTTACAGCA-TTTAAACACTTCAATTTACAG
36814046 TATTTAAACA
Statistics
Matches: 298, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
205 38 0.13
206 260 0.87
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (206 bp):
TAAACACTTCAATTTACAACATTTAAACACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
CACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCACTTTAACATCTCAATTA
ACAACATTTATACACCTCAACTACAGCGATAAAACATCTCAATTTCCAGCAGCTAAACACTTCAA
TTTGCAGTACG
Found at i:36814073 original size:46 final size:46
Alignment explanation
Indices: 36813546--36814074 Score: 437
Period size: 46 Copynumber: 11.6 Consensus size: 46
36813536 TTTGCAATAC
* * **
36813546 TTAAAAACTTCAATTTACAACA-TTTAAACACTTCAATTTGTAGCACT
1 TTAAACACTTCAATTTACAGCACTTT-AACACTTCAATTTACAGCA-T
*
36813593 TT-AACACTTCAATTTACAGCA-TTTAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCACTTT-AACACTTCAATTTACAGCA-T
* * * *
36813639 TT-AACA-TCTCAATTAACAACA-TTTATACACCTCAA-CTACAGCGA-
1 TTAAACACT-TCAATTTACAGCACTTTA-ACACTTCAATTTACAGC-AT
* * * * *
36813683 TAAAACA-TCTCAATTT-CTAGCAGC-TAAACACTTCAATTTGCAGTAC
1 TTAAACACT-TCAATTTAC-AGCA-CTTTAACACTTCAATTTACAGCAT
* * *
36813729 TTAAACACTTTAATTTACAACA-TTTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCACTTT-AACACTTCAATTTACAGCAT
*
36813775 TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCAT
* *
36813821 TTAAACACTTCAATTTACAGCACTTTAACA-TCTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCACTTTAACACT-TCAATTTACAGCAT
* * ** * *
36813867 TTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCAGCAG
1 TTAAACACTTCAATTTACAGC-ACTTTAACACT-TCAATTTACAGCAT
* * * * * *
36813912 CTAAACACTTCAATTTGCAGTACGTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCAT
* * *
36813958 TTAAGCACTTCAATTTACATCA-TATAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCACT-TTAACACTTCAATTTACAGCAT
* *
36814004 TT-AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGTAT
1 TTAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCAT
* * *
36814049 TTAAACACTTTAATTTGCTGCACTTT
1 TTAAACACTTCAATTTACAGCACTTT
36814075 CATACCTTCA
Statistics
Matches: 397, Mismatches: 63, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
44 2 0.01
45 106 0.27
46 281 0.71
47 8 0.02
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (46 bp):
TTAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCAT
Found at i:36816793 original size:7 final size:7
Alignment explanation
Indices: 36816748--36816915 Score: 79
Period size: 7 Copynumber: 23.7 Consensus size: 7
36816738 ATATCCCCTA
*
36816748 AAACCCT
1 AAACCAT
*
36816755 AAATCAT
1 AAACCAT
**
36816762 AAATAAT
1 AAACCAT
*
36816769 AAAACAT
1 AAACCAT
36816776 AAACCAT
1 AAACCAT
36816783 AAACCAT
1 AAACCAT
36816790 AAACCCAT
1 AAA-CCAT
* *
36816798 AACCCAC
1 AAACCAT
* *
36816805 AACCCCT
1 AAACCAT
* *
36816812 AACCCCT
1 AAACCAT
* *
36816819 AACCCCT
1 AAACCAT
*
36816826 AACCCAT
1 AAACCAT
*
36816833 AAACCTT
1 AAACCAT
**
36816840 AAACCCC
1 AAACCAT
* *
36816847 AACCCTT
1 AAACCAT
36816854 AAACCAT
1 AAACCAT
*
36816861 AATCCAT
1 AAACCAT
*
36816868 AAACCTT
1 AAACCAT
36816875 AAA--AT
1 AAACCAT
36816880 AGTAACTCAT
1 A--AAC-CAT
*
36816890 AAACCTT
1 AAACCAT
*
36816897 AAACCCT
1 AAACCAT
36816904 AAACCAT
1 AAACCAT
36816911 AAACC
1 AAACC
36816916 CTAAGCTATA
Statistics
Matches: 128, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
5 2 0.02
7 114 0.89
8 9 0.07
10 3 0.02
ACGTcount: A:0.48, C:0.34, G:0.01, T:0.18
Consensus pattern (7 bp):
AAACCAT
Found at i:36817471 original size:39 final size:40
Alignment explanation
Indices: 36817372--36817491 Score: 154
Period size: 40 Copynumber: 3.0 Consensus size: 40
36817362 TAATATTTTT
* * * * *
36817372 GCGGCCTTTTTCAAAAAGCGCCGCTAATGGTCGACCTCTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
*
36817412 GCGGTGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
*
36817452 -CGGCG-TTTTTAGAAAAGCGCCGCTAATTCTCGATCTATA
1 GCGGCGTTTTTTA-AAAAGCGCCGCTAATGCTCGATCTATA
36817491 G
1 G
36817492 AGCACCGCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 6 0.09
39 30 0.43
40 34 0.49
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:36817543 original size:65 final size:64
Alignment explanation
Indices: 36817432--36817556 Score: 205
Period size: 65 Copynumber: 1.9 Consensus size: 64
36817422 TTAAAAAGCG
* *
36817432 CCGCTAATGCTCGATCTATACGGCGTTTTTAGAAAAGCGCCGCTAATTCTCGATCTATAGAGCA
1 CCGCTAATGCTCGATCTATACGGCGTTTTTAGAAAAGCGCCGCTAATGCTCAATCTATAGAGCA
* *
36817496 CCGCTAATGCTCGATCTATAGCGGCGTTTTTAGAAAATCGCCTCTAATGCTCAATCTATAG
1 CCGCTAATGCTCGATCTATA-CGGCGTTTTTAGAAAAGCGCCGCTAATGCTCAATCTATAG
36817557 CGGCGTTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
64 20 0.36
65 36 0.64
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (64 bp):
CCGCTAATGCTCGATCTATACGGCGTTTTTAGAAAAGCGCCGCTAATGCTCAATCTATAGAGCA
Found at i:36817554 original size:40 final size:40
Alignment explanation
Indices: 36817499--36817646 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
36817489 TAGAGCACCG
*
36817499 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAATCGCCT
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGCGCCT
* *
36817539 CTAATGCTCAATCTATAGCGGCGTTTTTAGAAAAGCGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGCGCCT
* * *
36817579 CCAGTTCTCGATCTATAGCGGCGTTTTTCA-AAAAGCGCCT
1 CTAATGCTCGATCTATAGCGGCGTTTTT-AGAAAAGCGCCT
* **
36817619 ATAATGCTCGATCTATAGCTACGTTTTT
1 CTAATGCTCGATCTATAGCGGCGTTTTT
36817647 TTATCCAAAC
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 92 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (40 bp):
CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGCGCCT
Found at i:36817596 original size:105 final size:104
Alignment explanation
Indices: 36817392--36817596 Score: 304
Period size: 104 Copynumber: 2.0 Consensus size: 104
36817382 TCAAAAAGCG
* * * *
36817392 CCGCTAATGGTCGACCTCTAGCGGTGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATACGGCG
1 CCGCTAATGCTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCAATCTATACGGCG
*
36817457 TTTTTAGAAAAGCGCCGCTAATTCTCGATCTATAGAGCA
66 TTTTTAGAAAAGCGCCGCCAATTCTCGATCTATAGAGCA
* * *
36817496 CCGCTAATGCTCGATCTATAGCGGCG-TTTTTAGAAAATCGCCTCTAATGCTCAATCTATAGCGG
1 CCGCTAATGCTCGACCTATAGCGGCGTTTTTTA-AAAAGCGCCGCTAATGCTCAATCTATA-CGG
*
36817560 CGTTTTTAGAAAAGCGCCGCCAGTTCTCGATCTATAG
64 CGTTTTTAGAAAAGCGCCGCCAATTCTCGATCTATAG
36817597 CGGCGTTTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
103 6 0.07
104 46 0.51
105 38 0.42
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (104 bp):
CCGCTAATGCTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCAATCTATACGGCG
TTTTTAGAAAAGCGCCGCCAATTCTCGATCTATAGAGCA
Found at i:36821229 original size:55 final size:55
Alignment explanation
Indices: 36821162--36821273 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
36821152 AAAAACTGAT
*
36821162 CATGCATTACTTTATAATGGTATATTTTGATCTTCTAGTGGATAACATTATACAA
1 CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGATAACATTATACAA
*
36821217 CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGGTAACATTATACAA
1 CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGATAACATTATACAA
36821272 CA
1 CA
36821274 GATAGTTCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (55 bp):
CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGATAACATTATACAA
Found at i:36831852 original size:40 final size:40
Alignment explanation
Indices: 36831808--36832039 Score: 299
Period size: 40 Copynumber: 5.8 Consensus size: 40
36831798 ATAACCACAA
*
36831808 GCACAAATGCCCTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
36831848 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
36831888 GCACAAATGCCTTCGGGTCTTAGCCTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
36831928 GCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
36831968 GCACAAATGCCTTCGGGTCTTGGCCCGGATAAAATC-ACTAC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT-C
* * *
36832009 -CACAATTGCCTTCGGGACTTAGCCTGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
36832040 CATTCAAATG
Statistics
Matches: 166, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.02
40 154 0.93
41 8 0.05
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:36831911 original size:80 final size:80
Alignment explanation
Indices: 36831808--36832039 Score: 333
Period size: 80 Copynumber: 2.9 Consensus size: 80
36831798 ATAACCACAA
* * *
36831808 GCACAAATGCCCTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTCGCACAATTGCCTTCGGGTCTTAGC
*
36831872 CCGGATATATCAACTC
65 CCGGATATAGCAACTC
* * *
36831888 GCACAAATGCCTTCGGGTCTTAGCCTGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTCGCACAATTGCCTTCGGGTCTTAGCC
*
36831953 CGGGTATAGCAACTC
66 CGGATATAGCAACTC
* *
36831968 GCACAAATGCCTTCGGGTCTTGGCCCGGATAAAATCACTAC-CACAATTGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT-CGCACAATTGCCTTCGGGTCTTAGC
*
36832032 CTGGATAT
65 CCGGATAT
36832040 CATTCAAATG
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
80 131 0.97
81 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTCGCACAATTGCCTTCGGGTCTTAGCC
CGGATATAGCAACTC
Found at i:36832013 original size:120 final size:120
Alignment explanation
Indices: 36831779--36832038 Score: 355
Period size: 120 Copynumber: 2.2 Consensus size: 120
36831769 ACCCAAGTTT
* * * *
36831779 CTTCGGAATTTAGCC-GGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATATC
1 CTTCGGGACTTAGCCTGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
*
36831843 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTCGCACAAATGC
* * * * * * *
36831898 CTTCGGGTCTTAGCCTGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGC
1 CTTCGGGACTTAGCCTGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
* *
36831963 AACTCGCACAAATGCCTTCGGGTCTTGGCCCGGATAAAATC-ACTAC-CACAATTGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACT-CGCACAAATGC
36832018 CTTCGGGACTTAGCCTGGATA
1 CTTCGGGACTTAGCCTGGATA
36832039 TCATTCAAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
119 12 0.10
120 106 0.86
121 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CTTCGGGACTTAGCCTGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTCGCACAAATGC
Found at i:36846118 original size:14 final size:14
Alignment explanation
Indices: 36846099--36846126 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36846089 CATTTTTGGT
36846099 GATTTTTCAAAGTC
1 GATTTTTCAAAGTC
36846113 GATTTTTCAAAGTC
1 GATTTTTCAAAGTC
36846127 ATATAACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
GATTTTTCAAAGTC
Found at i:36846479 original size:52 final size:50
Alignment explanation
Indices: 36846361--36846538 Score: 232
Period size: 51 Copynumber: 3.5 Consensus size: 50
36846351 TGGATACCCG
* * * *
36846361 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACAAAGCTATCTTCTTCACAAA
36846412 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CAAAGCTATC-TTCTTCACAAA
* * *
36846464 GTGGCTTTGACATAGTACCACACTTGTGACAAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTATCTTCTTCACAAA
** *
36846513 GTAACCTTCACAAAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
36846539 AGTAACTAGT
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 30 0.27
50 1 0.01
51 44 0.39
52 38 0.34
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTATCTTCTTCACAAA
Found at i:36846593 original size:10 final size:10
Alignment explanation
Indices: 36846578--36846602 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36846568 ATTCTGTTCC
36846578 TAAAACATAA
1 TAAAACATAA
36846588 TAAAACATAA
1 TAAAACATAA
36846598 TAAAA
1 TAAAA
36846603 TGTTATAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
TAAAACATAA
Found at i:36850303 original size:21 final size:20
Alignment explanation
Indices: 36850275--36850314 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
36850265 GATCTATACG
36850275 AGTAAATTT-AACATCAATTT
1 AGTAAATTTAAAC-TCAATTT
36850295 AGTACAATTTAAACTCAATT
1 AGTA-AATTTAAACTCAATT
36850315 CAATCCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 11 0.61
22 3 0.17
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (20 bp):
AGTAAATTTAAACTCAATTT
Found at i:36850854 original size:13 final size:13
Alignment explanation
Indices: 36850836--36850863 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36850826 CATCTTTTTA
36850836 TTATTTTTCATCT
1 TTATTTTTCATCT
36850849 TTATTTTTCATCT
1 TTATTTTTCATCT
36850862 TT
1 TT
36850864 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:36853897 original size:29 final size:29
Alignment explanation
Indices: 36853830--36853940 Score: 172
Period size: 29 Copynumber: 3.9 Consensus size: 29
36853820 CATACATGCA
* ** *
36853830 TATGGCCCACTAGGCCC-AATTTCATTCA
1 TATGGCCCATTAGGCCCAAATCACATTCG
36853858 TA-GGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
36853886 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
36853915 TATGGCCCATTAGGCCCAAATCACAT
1 TATGGCCCATTAGGCCCAAATCACAT
36853941 CAAGTTGCCA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 13 0.17
28 12 0.16
29 52 0.68
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTCG
Found at i:36860541 original size:14 final size:13
Alignment explanation
Indices: 36860518--36860549 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
36860508 GGGATATCAA
36860518 AACAATAATTAAG
1 AACAATAATTAAG
36860531 AACACATAATTAAG
1 AACA-ATAATTAAG
36860545 AACAA
1 AACAA
36860550 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:36869812 original size:39 final size:39
Alignment explanation
Indices: 36869752--36869845 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 39
36869742 TGTATATCTG
36869752 TACT-ATACTGTCACTGAAATGGGCTCTAA-CCC-AACTGA
1 TACTGATACTGTCACTGAAATGGG-T-TAAGCCCTAACTGA
*
36869790 TACTGATACTGGT-ACTGTAATGGGTTAAGGCCCTAACTGA
1 TACTGATACT-GTCACTGAAATGGGTTAA-GCCCTAACTGA
*
36869830 TACTGA-ATTGTCACTG
1 TACTGATACTGTCACTG
36869846 GATTGGGCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
37 3 0.06
38 7 0.15
39 24 0.50
40 14 0.29
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (39 bp):
TACTGATACTGTCACTGAAATGGGTTAAGCCCTAACTGA
Found at i:36880333 original size:46 final size:46
Alignment explanation
Indices: 36880276--36880383 Score: 121
Period size: 46 Copynumber: 2.3 Consensus size: 46
36880266 AGACAAGGGT
*
36880276 TAGTGTAAGACATGTCTAGGACAAGTATCAGCCT-CGAGATG-TAAGC
1 TAGTGTAAGACATGTCTAGGACAAGCATC-GCCTACGAGATGAT-AGC
* * * * *
36880322 TAGTGTAAGACATATCTGGGACATGCATCGGCTACGAGATGATAGT
1 TAGTGTAAGACATGTCTAGGACAAGCATCGCCTACGAGATGATAGC
36880368 TAGTGTAAGACCATGT
1 TAGTGTAAGA-CATGT
36880384 TTGGGACATG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.06
46 44 0.85
47 5 0.10
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTAGGACAAGCATCGCCTACGAGATGATAGC
Found at i:36880431 original size:140 final size:140
Alignment explanation
Indices: 36880179--36880438 Score: 355
Period size: 140 Copynumber: 1.9 Consensus size: 140
36880169 CACTTGTGTG
* *
36880179 AGCTAGTGTAAGACATGTCGGAGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATATCGGAGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGT
* **
36880244 CTGGGACATGCCATCGGCATTGAGACAAGGGTTAGTGTAAGACATGTCTAGGACAAGTATCAGCC
66 CTGGGACATGCCATCGACATTGAGACAAGGGCCAGTGTAAGACATGTCTAGGACAAGTATCAGCC
36880309 TCGAGATGTA
131 TCGAGATGTA
* * *
36880319 AGCTAGTGTAAGACATATCTGG-GACATGCATCGGCTACGA-GATGATAGTTAGTGTAAGACCAT
1 AGCTAGTGTAAGACATATC-GGAGACATGCATCGGCCAC-ATGATGAGAGCTAGTGTAAGACCAT
* * * * *
36880382 GTTTGGGACATGGCATCGAC-TTGAGATATGGGCCAGTGTAAGACCATGTCTGGGACA
64 GTCTGGGACATGCCATCGACATTGAGACAAGGGCCAGTGTAAGA-CATGTCTAGGACA
36880439 TGGCATTGGC
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
139 19 0.18
140 82 0.79
141 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAGACATATCGGAGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGCCATCGACATTGAGACAAGGGCCAGTGTAAGACATGTCTAGGACAAGTATCAGCC
TCGAGATGTA
Found at i:36880441 original size:47 final size:47
Alignment explanation
Indices: 36880177--36880444 Score: 214
Period size: 47 Copynumber: 5.7 Consensus size: 47
36880167 GTCACTTGTG
*
36880177 TGAGCTAGTGTAAGA-CATGTC-GGAGACAT-GCATCGGC-C-ACATTA
1 TGAGCTAGTGTAAGACCATGTCTGG-GACATGGCATCGGCTCGAGA-TA
* * *
36880221 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCGGCATTGAGACA
1 T--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGATA
* * * * * * * *
36880271 AGGGTTAGTGTAAGA-CATGTCTAGGACA-AGTATCAGCCTCGAGATG
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTCGAGATA
* *
36880317 TAAGCTAGTGTAAGA-CATATCTGGGACAT-GCATCGGCTACGAGATGA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGAT-A
* * * *
36880364 T-AGTTAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATA
* *
36880410 TGGGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
36880445 TGGCAGCGTA
Statistics
Matches: 176, Mismatches: 33, Indels: 27
0.75 0.14 0.11
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 68 0.39
47 72 0.41
48 29 0.16
50 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATA
Found at i:36884467 original size:46 final size:45
Alignment explanation
Indices: 36884414--36884676 Score: 218
Period size: 46 Copynumber: 5.6 Consensus size: 45
36884404 TCACTTGTGT
*
36884414 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTGA-GAC
*
36884460 GAGCTAGTGTAAGACCATGTCCGGGACATGGCATCGG-CATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATTGAGAC
* *
36884506 GAGGGCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-TTGAGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
* * * *
36884552 GTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-CGAGAT
1 G--AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
* *
36884598 GATTG-TCAGTGTAAGACCATGTCTGGGACATGACATC-GAC-TTGAGATAT
1 GA--GCT-AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCATTGAG--AC
*
36884647 GAGCCAGTGTAAGACCATGTCTGGGACATG
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG
36884677 GCATTGGCAC
Statistics
Matches: 184, Mismatches: 14, Indels: 37
0.78 0.06 0.16
Matches are distributed among these distances:
44 1 0.01
45 6 0.03
46 79 0.43
47 72 0.39
48 22 0.12
49 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
Found at i:36884526 original size:47 final size:47
Alignment explanation
Indices: 36884414--36884680 Score: 253
Period size: 47 Copynumber: 5.7 Consensus size: 47
36884404 TCACTTGTGT
* * *** * *
36884414 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GACGA
* *
36884460 GAGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACGA
* *
36884508 GGGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTTGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGAGACG-A
* *
36884555 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGACGA
** * * * *
36884600 TTGTCAGTGTAAGACCATGTCTGGGACATGACATCGACTTGAGA-TA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACGA
36884646 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
36884681 TGGCACCTTA
Statistics
Matches: 186, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
45 4 0.02
46 75 0.40
47 77 0.41
48 29 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACGA
Found at i:36884641 original size:93 final size:93
Alignment explanation
Indices: 36884465--36884685 Score: 277
Period size: 93 Copynumber: 2.4 Consensus size: 93
36884455 TATGAGAGCT
* *
36884465 AGTGTAAGACCATGTCCGGGACATGGCATCGGCATTGAGACGAGGGCCAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATCGAGACGAGGGCCAGTGTAAGACATGTCTG
* *
36884530 GGACATGCATCAGCCTTGAGACGTAAGCC
65 GGACATGCATCAGACTTGAGACATAAGCC
* ** *
36884559 AGTGTAAGA-CATGTCTGGGACATGCATCGGC-TACGAGATGATTGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCAT-CGAGACGAGGGCCAGTGTAAGA-CATGTCT
* *
36884622 GGGACATGACATC-GACTTGAGATATGAGCC
64 GGGACATG-CATCAGACTTGAGACATAAGCC
*
36884652 AGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
36884686 CCTTACCCAT
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
91 1 0.01
92 25 0.23
93 50 0.45
94 27 0.25
95 7 0.06
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCATCGAGACGAGGGCCAGTGTAAGACATGTCTGG
GACATGCATCAGACTTGAGACATAAGCC
Found at i:36884671 original size:140 final size:140
Alignment explanation
Indices: 36884419--36884676 Score: 362
Period size: 140 Copynumber: 1.8 Consensus size: 140
36884409 TGTGTGAGCT
* *
36884419 AGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCTAGTGTAAGACCATGTCCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCCGG
* * *
36884484 GACATGGCATCGGCATTGAGACGAGGGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGA
66 GACATGACATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGA
36884549 GACGTAAGCC
131 GACGTAAGCC
* ** *
36884559 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATTG-TCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCT-AGTGTAAGACCATGTCC
*
36884622 GGGACATGACATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATG
64 GGGACATGACATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATG
36884677 GCATTGGCAC
Statistics
Matches: 104, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 82 0.79
141 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCCGG
GACATGACATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGA
GACGTAAGCC
Found at i:36886142 original size:46 final size:46
Alignment explanation
Indices: 36886074--36886164 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
36886064 TATATATACA
* * *
36886074 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
36886120 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
36886165 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:36886207 original size:22 final size:22
Alignment explanation
Indices: 36886181--36886256 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
36886171 ATCCACGTTC
36886181 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
36886203 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
36886228 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
36886250 ATCACAT
1 ATCACAT
36886257 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:36886209 original size:47 final size:47
Alignment explanation
Indices: 36886178--36886657 Score: 672
Period size: 47 Copynumber: 10.2 Consensus size: 47
36886168 CACATCCACG
* *
36886178 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
36886225 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
36886272 TTCTTCACATTGTCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
36886319 TTCATCAGATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
36886366 TTCATCACATTGGCCATTCGGTCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
36886413 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
36886460 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
** * * *
36886507 TTCATCACATTTTCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
36886554 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * **
36886601 TTCATCACATTTGCCATTCGGCCTTATCTCATGTATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
36886648 TCCATCACAT
1 TTCATCACAT
36886658 AAAATCCTAA
Statistics
Matches: 394, Mismatches: 39, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 394 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:36886562 original size:23 final size:23
Alignment explanation
Indices: 36886536--36886609 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
36886526 GGCCTTAGCA
36886536 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
36886559 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
36886583 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
36886606 CACA
1 CACA
36886610 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:36893225 original size:37 final size:37
Alignment explanation
Indices: 36893175--36893253 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36893165 TTATTACGAA
* *
36893175 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
36893212 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
36893249 GTCTT
1 GTCTT
36893254 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:36893450 original size:47 final size:47
Alignment explanation
Indices: 36893372--36893959 Score: 987
Period size: 47 Copynumber: 12.5 Consensus size: 47
36893362 CCCTTCGGGA
* * * * * * *
36893372 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36893419 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36893466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36893513 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36893560 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36893607 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36893654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36893701 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36893748 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36893795 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36893844 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36893891 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36893938 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
36893960 TTGGCTGAAT
Statistics
Matches: 514, Mismatches: 25, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
47 469 0.91
49 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36897717 original size:70 final size:70
Alignment explanation
Indices: 36897613--36897785 Score: 193
Period size: 70 Copynumber: 2.5 Consensus size: 70
36897603 ATTTATAATA
* * * * * * * * **
36897613 ATGTGCCTAGCACTAATCAAATGAATCAATGATGTTTTGCACCTAGCGCTAGTTAGATAATTGAC
1 ATGTGCCCAGCACTAGTCGAACGAATTAACGATGTTTTGCACCCAGCGCTAGTCAGATAACAGAC
36897678 GATGG
66 GATGG
* * *
36897683 ATGTGCCCAGCACTAGTCGAACGAATTAACGATGTTTTGCGCCCAGCGTTAGTCGGATAACAGAC
1 ATGTGCCCAGCACTAGTCGAACGAATTAACGATGTTTTGCACCCAGCGCTAGTCAGATAACAGAC
* *
36897748 TATTG
66 GATGG
* *
36897753 ATGTGCCCAGCACTAGCCGAACGAATTGACGAT
1 ATGTGCCCAGCACTAGTCGAACGAATTAACGAT
36897786 ATTAATTACC
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 86 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (70 bp):
ATGTGCCCAGCACTAGTCGAACGAATTAACGATGTTTTGCACCCAGCGCTAGTCAGATAACAGAC
GATGG
Found at i:36898823 original size:105 final size:105
Alignment explanation
Indices: 36898637--36898845 Score: 303
Period size: 105 Copynumber: 2.0 Consensus size: 105
36898627 ACTTCCAGCA
* * *
36898637 CTCTCTAATGGCATCTTTTCTTTCTTCTTTTCGGTAGCAACCCCCAATTAAGGAAGATGATAAAC
1 CTCTCTAATGGCATCTTTTCTTTCTTCTTTTCGGCAGCAACCCCCAACTAACGAAGATGATAAAC
*
36898702 TTCTTTTTTTCCCTTATTTGTTTAACGTTATTTTACTAAG
66 TTCTTTTTTTCCCTTATTTCTTTAACGTTATTTTACTAAG
* * * *
36898742 CTCTCTAATGGCTTCTTTTCTTTC-TCTTTTTCGGCAGCCAGCCCCAACTAACGAAGATGATACA
1 CTCTCTAATGGCATCTTTTCTTTCTTC-TTTTCGGCAGCAACCCCCAACTAACGAAGATGATAAA
** *
36898806 CTTCTTTTTTTTTCTTATTTCTTTAATGTTATTTTACTAA
65 CTTCTTTTTTTCCCTTATTTCTTTAACGTTATTTTACTAA
36898846 TTATTTACCT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
104 2 0.02
105 90 0.98
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.46
Consensus pattern (105 bp):
CTCTCTAATGGCATCTTTTCTTTCTTCTTTTCGGCAGCAACCCCCAACTAACGAAGATGATAAAC
TTCTTTTTTTCCCTTATTTCTTTAACGTTATTTTACTAAG
Found at i:36899618 original size:34 final size:34
Alignment explanation
Indices: 36899561--36899627 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
36899551 GAATACATTT
36899561 TGGGCCTAAGCCATCTCAGTAACAGTAA-CAGTC
1 TGGGCCTAAGCCATCTCAGTAACAGTAATCAGTC
* * *
36899594 TGGGCCTTAGCCCATTTTAGTAACAGTAATCAGT
1 TGGGCCTAAG-CCATCTCAGTAACAGTAATCAGT
36899628 GCAATAACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 9 0.31
34 16 0.55
35 4 0.14
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (34 bp):
TGGGCCTAAGCCATCTCAGTAACAGTAATCAGTC
Found at i:36899666 original size:18 final size:18
Alignment explanation
Indices: 36899612--36899669 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
36899602 AGCCCATTTT
36899612 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
* *
36899630 AATAACCATGT--TCAATGC
1 AGTAA-CA-GTAATCAGTGC
36899648 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
36899666 AGTA
1 AGTA
36899670 TGCAAGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 2 0.06
17 2 0.06
18 24 0.75
19 2 0.06
20 2 0.06
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (18 bp):
AGTAACAGTAATCAGTGC
Found at i:36899971 original size:22 final size:24
Alignment explanation
Indices: 36899928--36899977 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
36899918 ACCCCATGCA
*
36899928 ATGCAACTTAACATTATACATGG-
1 ATGCAACATAACATTATACATGGC
36899951 ATGCAACAT-ACA-TATACCATGGC
1 ATGCAACATAACATTATA-CATGGC
36899974 ATGC
1 ATGC
36899978 TCAAATACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 4 0.17
22 8 0.33
23 12 0.50
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (24 bp):
ATGCAACATAACATTATACATGGC
Found at i:36900058 original size:27 final size:26
Alignment explanation
Indices: 36900028--36900128 Score: 121
Period size: 27 Copynumber: 3.8 Consensus size: 26
36900018 TTAACTTACG
* *
36900028 GGGGTATTACAGTCATTTTACCCTAT
1 GGGGTATTTCGGTCATTTTACCCTAT
* *
36900054 AGGGGTATTTTGGTCATTCTACCCTAT
1 -GGGGTATTTCGGTCATTTTACCCTAT
36900081 GAGGGTATTTCGGTCATTTTACCCTAT
1 G-GGGTATTTCGGTCATTTTACCCTAT
* *
36900108 GATGGCATTTCGGTCATTTTA
1 G-GGGTATTTCGGTCATTTTA
36900129 TCACATAAGA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 64 0.98
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGGTATTTCGGTCATTTTACCCTAT
Found at i:36902882 original size:40 final size:40
Alignment explanation
Indices: 36902845--36903030 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
36902835 GCTACTCGTT
* *
36902845 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
36902885 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
36902925 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
36902965 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36903006 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36903031 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36905174 original size:91 final size:91
Alignment explanation
Indices: 36905063--36905248 Score: 318
Period size: 91 Copynumber: 2.0 Consensus size: 91
36905053 TTGTGTCACT
* * **
36905063 TTCTTCCACAACTAACTATTTATTTGTCGCCTCCTACCTGCTTCCATGCACAAGACCCAATACTT
1 TTCTTCCACAACTAACTATTTATTTGCCGCCTCCTACCTGCTCCCATAAACAAGACCCAATACTT
*
36905128 TTAGGCCCAAATTTGGGGCATTACAA
66 CTAGGCCCAAATTTGGGGCATTACAA
36905154 TTCTTCCACAACTAACTATTTATTTGCCGCCTCCTACCTGCTCCCATAAACAAGACCCAATACTT
1 TTCTTCCACAACTAACTATTTATTTGCCGCCTCCTACCTGCTCCCATAAACAAGACCCAATACTT
*
36905219 CTAGGCCTAAATTTGGGGCATTACAA
66 CTAGGCCCAAATTTGGGGCATTACAA
36905245 TTCT
1 TTCT
36905249 ACCCTTCATA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (91 bp):
TTCTTCCACAACTAACTATTTATTTGCCGCCTCCTACCTGCTCCCATAAACAAGACCCAATACTT
CTAGGCCCAAATTTGGGGCATTACAA
Found at i:36909049 original size:60 final size:59
Alignment explanation
Indices: 36908925--36909065 Score: 171
Period size: 60 Copynumber: 2.4 Consensus size: 59
36908915 CCCAACTGTG
* * *
36908925 TTGATATGGGCAAGGCCCAATATATCTCGACTTGTATAGGGCTACGGCCCAGATTGATA
1 TTGATATGGGCTAGGCCCAGTATATCTCGACTTGTATAGGGCTACGGCCCAGATTAATA
* *
36908984 CTGATATGGGCTAGGCCCAGTATA-CTCTGTTAC-TGTA-AGGGGCTATGGCCCAGATTAATA
1 TTGATATGGGCTAGGCCCAGTATATCTC-G--ACTTGTATA-GGGCTACGGCCCAGATTAATA
36909044 TTGATATGGGCTAAGGCCCAGT
1 TTGATATGGGCT-AGGCCCAGT
36909066 TAACACTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
58 3 0.04
59 23 0.32
60 34 0.48
61 11 0.15
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (59 bp):
TTGATATGGGCTAGGCCCAGTATATCTCGACTTGTATAGGGCTACGGCCCAGATTAATA
Found at i:36912616 original size:18 final size:19
Alignment explanation
Indices: 36912593--36912631 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
36912583 GTTATCTCAA
*
36912593 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
36912611 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
36912630 TT
1 TT
36912632 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:36913747 original size:21 final size:22
Alignment explanation
Indices: 36913723--36913764 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36913713 TTTTCACTTC
*
36913723 AATTTTT-TCGGATTTTTTTTG
1 AATTTTTATCGAATTTTTTTTG
*
36913744 AATTTTTATTGAATTTTTTTT
1 AATTTTTATCGAATTTTTTTT
36913765 AACTTGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.19, C:0.02, G:0.10, T:0.69
Consensus pattern (22 bp):
AATTTTTATCGAATTTTTTTTG
Found at i:36915053 original size:25 final size:25
Alignment explanation
Indices: 36915019--36915077 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
36915009 CCAAAGGGAT
36915019 TGGATCTTCTAGATACATTCATGCA
1 TGGATCTTCTAGATACATTCATGCA
36915044 TGGATCTTCTAGATACATTCATGCA
1 TGGATCTTCTAGATACATTCATGCA
*
36915069 TGAATCTTC
1 TGGATCTTC
36915078 ATCATTCATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (25 bp):
TGGATCTTCTAGATACATTCATGCA
Found at i:36915083 original size:21 final size:23
Alignment explanation
Indices: 36915022--36915087 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 23
36915012 AAGGGATTGG
*
36915022 ATCTTCTAGATACATTCATGCATGG
1 ATCTTC-A-ATACATTCATGCATGA
36915047 ATCTTCTAGATACATTCATGCATGA
1 ATCTTC-A-ATACATTCATGCATGA
36915072 ATCTTC-AT-CATTCATG
1 ATCTTCAATACATTCATG
36915088 TAACCAAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 8 0.20
22 2 0.05
25 30 0.75
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (23 bp):
ATCTTCAATACATTCATGCATGA
Found at i:36917077 original size:27 final size:27
Alignment explanation
Indices: 36916960--36917075 Score: 103
Period size: 27 Copynumber: 4.3 Consensus size: 27
36916950 TAGAACAAAT
* ** *
36916960 GTCATTTTACCTTACCAGGGTATCAT-A
1 GTCATTTTACCCTATGAGGGTAT-TTCA
*
36916987 GTCATTTTACCCTAT-AGGGGT-TTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCA
** * *
36917013 GTCATTCCACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGAGGGTATTTCA
*
36917040 GTCATTTTATCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCA
36917067 GTCATTTTA
1 GTCATTTTA
36917076 TCACGTAAGG
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.01
26 19 0.27
27 51 0.72
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCA
Found at i:36917086 original size:27 final size:26
Alignment explanation
Indices: 36917030--36917114 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
36917020 CACCCTATGG
*
36917030 GGGTATTTTAGTCATTTTATC-CTATGA
1 GGGTATTTCAGTCATTTTATCACTA--A
36917057 GGGTATTTCAGTCATTTTATCACGTAA
1 GGGTATTTCAGTCATTTTATCAC-TAA
* **
36917084 GGGAAAAATC-GTCATTTTATCACATAA
1 GGG-TATTTCAGTCATTTTATCAC-TAA
36917111 GGGT
1 GGGT
36917115 TCAGGTACGC
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 43 0.88
28 4 0.08
29 2 0.04
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTCAGTCATTTTATCACTAA
Found at i:36917256 original size:18 final size:18
Alignment explanation
Indices: 36917217--36917257 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
36917207 CATAATACGG
*
36917217 GCCCATGTGGGCCCACAC
1 GCCCATGTGGGCCCACAA
36917235 GCCCATGT-GGCCCACGAA
1 GCCCATGTGGGCCCAC-AA
36917253 GCCCA
1 GCCCA
36917258 AAAATGGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.20, C:0.44, G:0.27, T:0.10
Consensus pattern (18 bp):
GCCCATGTGGGCCCACAA
Found at i:36926561 original size:28 final size:28
Alignment explanation
Indices: 36926529--36926592 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
36926519 GTGGGAATAG
*
36926529 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
*
36926557 TTGGGCCTGATGGGCCATGTGAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
*
36926585 TTAGGCCT
1 TTGGGCCT
36926593 AAAGGGGCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:36926609 original size:29 final size:28
Alignment explanation
Indices: 36926540--36926609 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
36926530 TGGGCCTGAT
* * * *
36926540 GGGCCATATGAATGTGATTGGGCCTGAT
1 GGGCCATATGAATGAGATTAGGCCTAAG
*
36926568 GGGCCATGTGAATGAGATTAGGCCTAAAG
1 GGGCCATATGAATGAGATTAGGCCT-AAG
*
36926597 GGGCCAAATGAAT
1 GGGCCATATGAAT
36926610 AAGTTTGGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 22 0.65
29 12 0.35
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (28 bp):
GGGCCATATGAATGAGATTAGGCCTAAG
Found at i:36926961 original size:27 final size:27
Alignment explanation
Indices: 36926930--36927244 Score: 339
Period size: 27 Copynumber: 11.8 Consensus size: 27
36926920 ATACCCCTGG
* * *
36926930 TTGTAAAATTATTGAAGTGCCCCCGAT
1 TTGTAAAATTATTGAAATACCCTCGAT
* *
36926957 TTGTAAAATTATCGAAATACCCTAG-T
1 TTGTAAAATTATTGAAATACCCTCGAT
* * * *
36926983 TTATAAAATTATCGAAATACCCTTGGT
1 TTGTAAAATTATTGAAATACCCTCGAT
* * * *
36927010 TTGCAAAATTACTGCAATACCCTCAAT
1 TTGTAAAATTATTGAAATACCCTCGAT
*
36927037 TTGTAAAATTATCGAAATACCCTCGA-
1 TTGTAAAATTATTGAAATACCCTCGAT
36927063 TTGTAAAATTATTGAAATACCCTCGAT
1 TTGTAAAATTATTGAAATACCCTCGAT
* *
36927090 TTGTAAAATTACTGAAACACCCTCGA-
1 TTGTAAAATTATTGAAATACCCTCGAT
* * *
36927116 TTGTAAATTTATTGAAATACCTTCAAT
1 TTGTAAAATTATTGAAATACCCTCGAT
** * *
36927143 TTGTAAAATTACCGAAACACCCTTGAT
1 TTGTAAAATTATTGAAATACCCTCGAT
* *
36927170 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTATTGAAATACCCTCGAT
* * * *
36927197 TTGTAAAATTACTAAAACACCCCCGAT
1 TTGTAAAATTATTGAAATACCCTCGAT
*
36927224 TTGTAAAATTATCGAAATACC
1 TTGTAAAATTATTGAAATACC
36927245 TTTGTAGTAT
Statistics
Matches: 240, Mismatches: 45, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
26 70 0.29
27 170 0.71
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTATTGAAATACCCTCGAT
Found at i:36926990 original size:53 final size:53
Alignment explanation
Indices: 36926953--36927244 Score: 295
Period size: 53 Copynumber: 5.5 Consensus size: 53
36926943 GAAGTGCCCC
* * *
36926953 CGATTTGTAAAATTATCGAAATACCCTAGTTTATAAAATTATCGAAATACCCT
1 CGATTTGTAAAATTATCGAAATACCCTAGTTTGTAAAATTACCGAAACACCCT
* * * * * * *
36927006 TGGTTTGCAAAATTA-CTGCAATACCCTCAATTTGTAAAATTATCGAAATACCCT
1 CGATTTGTAAAATTATC-GAAATACCCT-AGTTTGTAAAATTACCGAAACACCCT
* * *
36927060 CGA-TTGTAAAATTATTGAAATACCCTCGATTTGTAAAATTACTGAAACACCCT
1 CGATTTGTAAAATTATCGAAATACCCTAG-TTTGTAAAATTACCGAAACACCCT
* * * *
36927113 CGA-TTGTAAATTTATTGAAATACCTTCAATTTGTAAAATTACCGAAACACCCT
1 CGATTTGTAAAATTATCGAAATACCCT-AGTTTGTAAAATTACCGAAACACCCT
* * * ** *
36927166 TGATTTGTAAAATTA-CTAAAATACCCTCGATTTGTAAAATTACTAAAACACCCC
1 CGATTTGTAAAATTATC-GAAATACCCTAG-TTTGTAAAATTACCGAAACACCCT
36927220 CGATTTGTAAAATTATCGAAATACC
1 CGATTTGTAAAATTATCGAAATACC
36927245 TTTGTAGTAT
Statistics
Matches: 197, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 110 0.56
54 85 0.43
55 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (53 bp):
CGATTTGTAAAATTATCGAAATACCCTAGTTTGTAAAATTACCGAAACACCCT
Found at i:36927044 original size:80 final size:80
Alignment explanation
Indices: 36926930--36927244 Score: 364
Period size: 80 Copynumber: 3.9 Consensus size: 80
36926920 ATACCCCTGG
* * * * *
36926930 TTGTAAAATTATTGAAGTGCCCCCGATTTGTAAAATTATCGAAATACCCTAGTTTATAAAATTAT
1 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTAGTTTGTAAAATTAT
*
36926995 CGAAATACCCTTGGT
66 CGAAATACCCTTGAT
* * * * *
36927010 TTGCAAAATTACTGCAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTAT
1 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTAGTTTGTAAAATTAT
* *
36927075 TGAAATACCCTCGAT
66 CGAAATACCCTTGAT
* * * * *
36927090 TTGTAAAATTACTGAAACACCCTCGA-TTGTAAATTTATTGAAATACCTTCAATTTGTAAAATTA
1 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCT-AGTTTGTAAAATTA
* *
36927154 CCGAAACACCCTTGAT
65 TCGAAATACCCTTGAT
* * * **
36927170 TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTA-CTAAAACACCCCCGATTTGTAAAATT
1 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTAG-TTTGTAAAATT
36927234 ATCGAAATACC
64 ATCGAAATACC
36927245 TTTGTAGTAT
Statistics
Matches: 192, Mismatches: 39, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
79 20 0.10
80 136 0.71
81 36 0.19
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTAGTTTGTAAAATTAT
CGAAATACCCTTGAT
Found at i:36927310 original size:27 final size:27
Alignment explanation
Indices: 36926958--36927312 Score: 145
Period size: 27 Copynumber: 13.3 Consensus size: 27
36926948 GCCCCCGATT
* * *
36926958 TGTAAAATTATCGAAATACCCTAGT-T
1 TGTAAAATTACCGAAATACCCTTGTAG
* * *
36926984 TATAAAATTATCGAAATACCCTTGGT-T
1 TGTAAAATTACCGAAATACCCTT-GTAG
* * * ** *
36927011 TGCAAAATTACTGCAATACCC-TCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * *
36927038 TGTAAAATTATCGAAATACCCTCG-AT
1 TGTAAAATTACCGAAATACCCTTGTAG
** * *
36927064 TGTAAAATTATTGAAATACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * * *
36927091 TGTAAAATTACTGAAACACCCTCG-AT
1 TGTAAAATTACCGAAATACCCTTGTAG
* ** ** *
36927117 TGTAAATTTATTGAAATA-CCTTCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* *
36927144 TGTAAAATTACCGAAACACCCTTG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
** * *
36927171 TGTAAAATTACTAAAATACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
** * ** *
36927198 TGTAAAATTACTAAAACACCCCCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* *
36927225 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
36927252 TATAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
36927279 TGTAAAATGACCGACATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
36927306 GGTAAAA
1 TGTAAAA
36927313 CGACTGTTTT
Statistics
Matches: 269, Mismatches: 51, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
25 3 0.01
26 64 0.24
27 197 0.73
28 5 0.02
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:36930129 original size:28 final size:28
Alignment explanation
Indices: 36930089--36930152 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
36930079 TGGGAAGTAG
*
36930089 TTGGGCCTGATGGGCCATATGAA-TATGA
1 TTGGGCCTGATGGGCCATATGAACGA-GA
*
36930117 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
36930145 TTGGGCCT
1 TTGGGCCT
36930153 AAAGGGGCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:36930502 original size:27 final size:26
Alignment explanation
Indices: 36930472--36930892 Score: 403
Period size: 27 Copynumber: 15.7 Consensus size: 26
36930462 TAATAAAGAG
*
36930472 AAATTACCGAAATACCCCCAGTTTGTA
1 AAATTACCGAAATACCCTC-GTTTGTA
*
36930499 AAATTACCGAAGTACCCTCGGTTTGTA
1 AAATTACCGAAATACCCTC-GTTTGTA
** *
36930526 AAATTATAGAAATACTCCT-GGTTGTA
1 AAATTACCGAAATAC-CCTCGTTTGTA
* *
36930552 AAATTACCAAAATATCCCTAGTTTGTA
1 AAATTACCGAAATA-CCCTCGTTTGTA
* *
36930579 AAATTACCGAAATACCCTTGGTTTGCA
1 AAATTACCGAAATACCC-TCGTTTGTA
****
36930606 AAATTGTTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
*
36930633 AAATTACCGAAATACCCTCGATTGTA
1 AAATTACCGAAATACCCTCGTTTGTA
*** *
36930659 AAATTAGTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTC-GTTTGTA
**
36930686 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
* *
36930713 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
*
36930740 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
**
36930767 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
* *
36930794 AAATTATCGAAATACCATCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
** * *
36930821 AAATTACTAAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCG-TTTGTA
* * *
36930848 AAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCTCGT-TTGTA
36930875 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
36930893 TATAGTGTAA
Statistics
Matches: 328, Mismatches: 58, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
26 47 0.14
27 278 0.85
28 3 0.01
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACCGAAATACCCTCGTTTGTA
Found at i:36930633 original size:54 final size:54
Alignment explanation
Indices: 36930493--36930892 Score: 477
Period size: 54 Copynumber: 7.4 Consensus size: 54
36930483 ATACCCCCAG
** * * *
36930493 TTTGTAAAATTACCGAAGTACCCTCGGTTTGTAAAATTATAGAAATACTCC-TG-
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATAC-CCTTGA
* * * * *
36930546 GTTGTAAAATTACCAAAATATCCCTAG-TTTGTAAAATTACCGAAATACCCTTGG
1 TTTGTAAAATTACTAAAATA-CCCTCGATTTGTAAAATTATCGAAATACCCTTGA
* ** * *
36930600 TTTGCAAAATTGTTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGA
* * * *
36930654 -TTGTAAAATTAGTAAAATACCCTCAATTTGTAAAATTATTGAAATACCCTCGA
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGA
* * *
36930707 TTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCGA
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGA
* *
36930761 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCATCGA
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGA
* *
36930815 TTTGTAAAATTACTAAAACACCTTCGATTTGTAAAATTATCGAAATACCCTTG-
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGA
* **
36930868 TAGTGTAAAATTACCGAAATACCCT
1 T-TTGTAAAATTACTAAAATACCCT
36930893 TATAGTGTAA
Statistics
Matches: 304, Mismatches: 37, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
52 2 0.01
53 91 0.30
54 211 0.69
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGA
Found at i:36930780 original size:81 final size:80
Alignment explanation
Indices: 36930472--36930918 Score: 476
Period size: 81 Copynumber: 5.5 Consensus size: 80
36930462 TAATAAAGAG
* * *
36930472 AAATTACCGAAATACCC-CCAGTTTGTAAAATTACCGAAGTACCCTCGGTTTGTAAAATTATAGA
1 AAATTACCGAAATACCCTCGA-TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATA-A
*
36930536 AATACTCCT-G-GTTGTA
64 AATAC-CCTCGATTTGTA
* * * * * *
36930552 AAATTACCAAAATATCCCTAG-TTTGTAAAATTACCGAAATACCCTTGGTTTGCAAAATTGTTAA
1 AAATTACCGAAATA-CCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATT-ATAA
36930616 AATACCCTCGATTTGTA
64 AATACCCTCGATTTGTA
*** * *
36930633 AAATTACCGAAATACCCTCGA-TTGTAAAATTAGTAAAATACCCTCAATTTGTAAAATTATTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-TAAA
36930697 ATACCCTCGATTTGTA
65 ATACCCTCGATTTGTA
* * *
36930713 AAATTACTGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-TAAA
36930778 ATACCCTCGATTTGTA
65 ATACCCTCGATTTGTA
* * ** * * *
36930794 AAATTATCGAAATACCATCGATTTGTAAAATTACTAAAACACCTTCGATTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAT-AAA
* *
36930859 ATACCCTTG-TAGTGTA
65 ATACCCTCGAT-TTGTA
* * * *
36930875 AAATTACCGAAATACCCT-TATAGTGTAAAATGACCGACATACCC
1 AAATTACCGAAATACCCTCGAT-TTGTAAAATTACCGAAATACCC
36930919 CTATAGGGTA
Statistics
Matches: 307, Mismatches: 49, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.01
80 132 0.43
81 172 0.56
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATAAAA
TACCCTCGATTTGTA
Found at i:36930923 original size:27 final size:27
Alignment explanation
Indices: 36930844--36930935 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
36930834 ACCTTCGATT
* * *
36930844 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTATAG
*
36930871 TGTAAAATTACCGAAATACCCTTATAG
1 TGTAAAATGACCGAAATACCCTTATAG
* *
36930898 TGTAAAATGACCGACATACCCCTATAG
1 TGTAAAATGACCGAAATACCCTTATAG
*
36930925 GGTAAAATGAC
1 TGTAAAATGAC
36930936 TATTTTGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTATAG
Found at i:36936095 original size:19 final size:19
Alignment explanation
Indices: 36936060--36936140 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
36936050 AGATTACAAG
36936060 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
36936081 ATCATATCTAAGATTACAT
1 ATCATATCTAAGATTGCAT
36936100 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
36936119 ATCATATCTAAGATTCCAT
1 ATCATATCTAAGATTGCAT
36936138 ATC
1 ATC
36936141 CTTAAAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
19 48 0.84
20 1 0.02
21 8 0.14
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:36936117 original size:38 final size:40
Alignment explanation
Indices: 36936049--36936140 Score: 143
Period size: 38 Copynumber: 2.3 Consensus size: 40
36936039 TTAAATCTCC
*
36936049 AAGATTACAAGATCATATCTTCAAGATTGCATATCATATCT
1 AAGATTAC-ATATCATATCTTCAAGATTGCATATCATATCT
36936090 AAGATTACATATCATATC-T-AAGATTGCATATCATATCT
1 AAGATTACATATCATATCTTCAAGATTGCATATCATATCT
*
36936128 AAGATTCCATATC
1 AAGATTACATATC
36936141 CTTAAAGATT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
38 31 0.63
39 1 0.02
40 9 0.18
41 8 0.16
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (40 bp):
AAGATTACATATCATATCTTCAAGATTGCATATCATATCT
Found at i:36936583 original size:44 final size:45
Alignment explanation
Indices: 36936507--36936637 Score: 140
Period size: 45 Copynumber: 2.9 Consensus size: 45
36936497 ACTATCTTTG
* * * * *
36936507 ATCTGCTCCCTGTCTAATACAGAGACGTCAAAT-T-TTCTTCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT-ATCTCCA
*
36936551 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
* * * * *
36936596 ATTTACTCCCCATCTAATACAAAGATGCCAAATCTGTCATCT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCT
36936638 TGGATCTGCG
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
44 30 0.41
45 42 0.57
46 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
Found at i:36936837 original size:46 final size:45
Alignment explanation
Indices: 36936776--36936995 Score: 146
Period size: 46 Copynumber: 4.9 Consensus size: 45
36936766 GAAATCTTCA
* * *
36936776 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTATG
1 ATCTG-TTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCT-TG
* * * *
36936823 ATCTGTTCCCTGTAAACACAGGGATGCCAAATATGCTA--TCTTC
1 ATCTGTTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCTTG
* ** * *** *
36936866 AACTTGTTCCCTAAAAACACAGGGATGCCATG-T-TAAAATCT-TTG
1 ATC-TGTTCCCTGTAAACACAGGAATGCCA-GATCTGCTATGTCTTG
* * * *
36936910 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCA
1 ATCTG-TTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCTT-G
* *
36936957 ATCTGTTCCCTGTAAATACAGGGATGCC-GAATCTGCTAT
1 ATCTGTTCCCTGTAAACACAGGAATGCCAG-ATCTGCTAT
36936996 CTTCAACTTG
Statistics
Matches: 131, Mismatches: 32, Indels: 21
0.71 0.17 0.11
Matches are distributed among these distances:
43 8 0.06
44 51 0.39
45 6 0.05
46 56 0.43
47 10 0.08
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (45 bp):
ATCTGTTCCCTGTAAACACAGGAATGCCAGATCTGCTATGTCTTG
Found at i:36936884 original size:44 final size:44
Alignment explanation
Indices: 36936711--36937043 Score: 178
Period size: 44 Copynumber: 7.5 Consensus size: 44
36936701 CGAATATGGA
*
36936711 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGG
** * * *
36936755 GATGCC--ATGCTGAAATCTTCAA-TCTGCTTCGCTGTAAGCACAGG
1 GATGCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAACACAGG
* * * * * *
36936799 AATGTCAGATCTGCTATGTCTATGATC-TGTTCCCTGTAAACACAGG
1 GATGCCAAATCTGCTA--TCT-TCAACTTGTTCCCTATAAACACAGG
* *
36936845 GATGCCAAATATGCTATCTTCAACTTGTTCCCTAAAAACACAGG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGG
** *** ** * * *
36936889 GATGCCATGT-TAAAATCTTTGA-TCTGCTTCGCTGTAAGCACAGG
1 GATGCCAAATCTGCTATCTTCAACT-TG-TTCCCTATAAACACAGG
* * * * *
36936933 AATGTCAGATCTGCTATGTCTTCAA-TCTGTTCCCTGTAAATACAGG
1 GATGCCAAATCTGCTA--TCTTCAACT-TGTTCCCTATAAACACAGG
* * * * *
36936979 GATGCCGAATCTGCTATCTTCAACTTGCTCTCTGAT-AATACAGA
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCT-ATAAACACAGG
* *
36937023 GACGCCAAATCTTCTATCTTC
1 GATGCCAAATCTGCTATCTTC
36937044 GATCTGCTCT
Statistics
Matches: 216, Mismatches: 56, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
42 4 0.02
43 24 0.11
44 109 0.50
45 8 0.04
46 55 0.25
47 14 0.06
48 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGG
Found at i:36936886 original size:134 final size:134
Alignment explanation
Indices: 36936711--36937005 Score: 484
Period size: 134 Copynumber: 2.2 Consensus size: 134
36936701 CGAATATGGA
* * *
36936711 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGCTAAAATCTTCA
*
36936776 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTAT-GATCTGTTCCCTGTAAAC
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCT-TCAATCTGTTCCCTGTAAAC
36936840 ACAGG
130 ACAGG
* * **
36936845 GATGCCAAATATGCTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGTTAAAATCTTTG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGCTAAAATCTTCA
*
36936910 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTGTTCCCTGTAAATA
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTGTTCCCTGTAAACA
36936975 CAGG
131 CAGG
*
36936979 GATGCCGAATCTGCTATCTTCAACTTG
1 GATGCCAAATCTGCTATCTTCAACTTG
36937006 CTCTCTGATA
Statistics
Matches: 149, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
133 1 0.01
134 148 0.99
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (134 bp):
GATGCCAAATCTGCTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGCTAAAATCTTCA
ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTGTTCCCTGTAAACA
CAGG
Found at i:36936964 original size:90 final size:87
Alignment explanation
Indices: 36936821--36936984 Score: 204
Period size: 90 Copynumber: 1.9 Consensus size: 87
36936811 GCTATGTCTA
*
36936821 TGATCTGTTCCCTGTAAACACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTAAAAACAC
1 TGATCTGTTCCCTGTAAACACAGGAATGCCAAATATGCTATCTTCAACTTGTTCCCTAAAAACAC
36936886 AGGGATGCCATGTTAAAATCTT
66 AGGGATGCCATGTTAAAATCTT
* * * * * **
36936908 TGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAA-TCTGTTCCCTGTAA
1 TGATCTG-TTCCCTGTAAACACAGGAATGCCAAATATGCTA--TCTTCAACT-TGTTCCCTAAAA
*
36936972 ATACAGGGATGCC
62 ACACAGGGATGCC
36936985 GAATCTGCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
87 7 0.11
88 27 0.42
89 1 0.02
90 29 0.45
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (87 bp):
TGATCTGTTCCCTGTAAACACAGGAATGCCAAATATGCTATCTTCAACTTGTTCCCTAAAAACAC
AGGGATGCCATGTTAAAATCTT
Found at i:36937052 original size:44 final size:44
Alignment explanation
Indices: 36936971--36938083 Score: 297
Period size: 44 Copynumber: 25.4 Consensus size: 44
36936961 GTTCCCTGTA
* * * * *
36936971 AATACAGGGATGCCGAATCTGCTATCTTC-AACTTGCTCTCTGAT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATC-TGCTCTCTGCT
* *
36937015 AATACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCT
* * *
36937059 AATACAAAGATGTCAAATCTGT-TATCTTCGATCTGCTCCCTGTCT
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTG-CT
* * * * **
36937104 AATACAGAGATGCC-AA--GTCT-GCTTAGATTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGC-T
* * ** * *
36937144 AA-ACACGTGAAAGCCAAATCAGCTATGCCTTCGATCTGCTCCCTGCC
1 AATACA-GAG-ATGCCAAATCTTCTAT--CTTCGATCTGCTCTCTGCT
* * * * **
36937191 AATACAGAGACGCCAAA---TC-ATCTTAGGTTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGC-T
* ** ** * *
36937231 AA-ACACGTGAAAACCAAATCAGCTATGTCCTCGATCTGCTCTCTGCC
1 AATACA-GAG-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCT
* * * **
36937278 AATACAGAGACGCCAAA---TC-ATCTTAGATTTGCT-TCAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGC-T
* * ** * * *
36937318 AA-ACACGTGAAAGCCAAATCAGCTATGTCTTTGATCTGCTCCCTGCC
1 AATACA-GAG-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCT
* * *
36937365 AATATAGAGATGCCAAA---TC-ATCTTAGATTTGCT-TCAATG-T
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTC--TGCT
* * ** * *
36937405 AA-ACATGTGAAAGCCAAATCAGCTATGTCCTT-GATCTGCTCCCTGCC
1 AATACA-GAG-ATGCCAAATCTTCTA--T-CTTCGATCTGCTCTCTGCT
* * * * * * *
36937452 AATGCAAAGACGCCAAATCTACTGTCTTTGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCT
* * *
36937496 AATATAGAGATGCCAAATCTGT-TATCTTCAATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCT
*
36937540 AATATAGAGATGCCAAAT-TTGCTATCTTCGATCTGCTCTCTGAC-
1 AATACAGAGATGCCAAATCTT-CTATCTTCGATCTGCTCTCTG-CT
* * * * *
36937584 AATATAGAGACGCCAAA---TC-ATCTTGGATTTACT-TCAATG-T
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTC--TGCT
* * * * * * *
36937624 AA-ACATGTGAAAGCCAAATCAGTTATGTCTTCGATCTGCTCCCTTCC
1 AATACA-GAG-ATGCCAAATC--TTCTATCTTCGATCTGCTCTCTGCT
* *
36937671 AATACAGAGATGCCAAA---TC-ATCTTAGATTTGCT-TCAATG-T
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTC--TGCT
* * ** * * *
36937711 AA-ACACGTGAAAGCCAAATCAGCTATGTCCTCGATCTGCTCCCTGCC
1 AATACA-GAG-ATGCCAAATCTTCTA--TCTTCGATCTGCTCTCTGCT
* * * *
36937758 AATACAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCT
* * * * *
36937802 AATGCAGAGATGCCAAAT-TTGTTATCTTCAATCTACTCTCTGCC
1 AATACAGAGATGCCAAATCTT-CTATCTTCGATCTGCTCTCTGCT
* * * * * *
36937846 AAAACAGAGATGCCAAATCTGCTACCTTTGATTTGCTTTCTGAC-
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTG-CT
* * * * *
36937890 AATACAAAGACGCCAAA---TC-ATCTTGGATTTGCT-T-TAACGT
1 AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCT-GC-T
* * * * * * * * *
36937930 AA-ACACGTGAAAGCCAAATTAGTTATGTCTTCAATTTGCTCCCTGCC
1 AATACA-GAG-ATGCCAAA-T-CTTCTATCTTCGATCTGCTCTCTGCT
*
36937977 AATACAGAGATGCCAAATCTGT-TATCTTCGATCTGCTCTCTGCC
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTGCT
*
36938021 AATACAGAGATGCCAAATCTGTC-ATCTTCGATCTGCTCCCTGAC-
1 AATACAGAGATGCCAAATCT-TCTATCTTCGATCTGCTCTCTG-CT
36938065 AATACAGAGATGCCAAATC
1 AATACAGAGATGCCAAATC
36938084 ATCTTGGATC
Statistics
Matches: 782, Mismatches: 184, Indels: 206
0.67 0.16 0.18
Matches are distributed among these distances:
38 2 0.00
39 30 0.04
40 93 0.12
41 64 0.08
42 9 0.01
43 8 0.01
44 356 0.46
45 26 0.03
46 64 0.08
47 96 0.12
48 33 0.04
49 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTTCTATCTTCGATCTGCTCTCTGCT
Found at i:36937072 original size:134 final size:133
Alignment explanation
Indices: 36936711--36937126 Score: 380
Period size: 134 Copynumber: 3.1 Consensus size: 133
36936701 CGAATATGGA
* * * * * *
36936711 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGC-TGAAATCTTC
1 GATGCC-AATCTGCTATCTTCAACTTGCTCCCTAAAAACACAGAGACGCCAT-CTTAAAATCTTC
* * * *
36936775 AATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTAT-GATCTGTTCCCTGTAAA
64 GATCTGCTTCGCTGCAAACACAAGAATGTCAGATCTGCTATGTCT-TCGATCTGTTCCCTGTAAA
*
36936839 CACAGG
128 TACAGG
* * * * * *
36936845 GATGCCAAATATGCTATCTTCAACTTGTTCCCTAAAAACACAGGGATGCCATGTTAAAATCTTTG
1 GATGCC-AATCTGCTATCTTCAACTTGCTCCCTAAAAACACAGAGACGCCATCTTAAAATCTTCG
* * * *
36936910 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTGTTCCCTGTAAATA
65 ATCTGCTTCGCTGCAAACACAAGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAATA
36936975 CAGG
130 CAGG
* * * * **
36936979 GATGCCGAATCTGCTATCTTCAACTTGCTCTCTGATAATACAGAGACGCCAAATCTT-CTATCTT
1 GATGCC-AATCTGCTATCTTCAACTTGCTCCCTAAAAACACAGAGACGCC--ATCTTAAAATCTT
* * * *
36937043 CGATCTGC-TCTCTGCCAATACA-AAG-ATGTCAAATCTG-T-TATCTTCGATCTGCTCCCTGTC
63 CGATCTGCTTCGCTG-CAA-ACACAAGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGT-
* *
36937103 TAATACAGA
125 AAATACAGG
36937112 GATGCCAAGTCTGCT
1 GATGCCAA-TCTGCT
36937127 TAGATTTGCT
Statistics
Matches: 242, Mismatches: 32, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
132 20 0.08
133 21 0.09
134 179 0.74
135 16 0.07
136 6 0.02
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (133 bp):
GATGCCAATCTGCTATCTTCAACTTGCTCCCTAAAAACACAGAGACGCCATCTTAAAATCTTCGA
TCTGCTTCGCTGCAAACACAAGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAATAC
AGG
Found at i:36937231 original size:87 final size:88
Alignment explanation
Indices: 36937084--36937470 Score: 604
Period size: 87 Copynumber: 4.4 Consensus size: 88
36937074 AATCTGTTAT
* * *
36937084 CTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAGTC-TGCTTAGATTTGCTTCAACGTAAAC
1 CTTCGATCTGCTCCCTG-CCAATACAGAGACGCCAAATCAT-CTTAGATTTGCTTCAACGTAAAC
36937148 ACGTGAAAGCCAAATCAGCTATG-C
64 ACGTGAAAGCCAAATCAGCTATGTC
*
36937172 CTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGGTTTGCTTCAACGTAAACAC
1 CTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
*
36937237 GTGAAAACCAAATCAGCTATGTC
66 GTGAAAGCCAAATCAGCTATGTC
*
36937260 C-TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
36937324 GTGAAAGCCAAATCAGCTATGT-
66 GTGAAAGCCAAATCAGCTATGTC
* * * * *
36937346 CTTTGATCTGCTCCCTGCCAATATAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACAT
1 CTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
36937411 GTGAAAGCCAAATCAGCTATGTC
66 GTGAAAGCCAAATCAGCTATGTC
* *
36937434 CTT-GATCTGCTCCCTGCCAATGCAAAGACGCCAAATC
1 CTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
36937471 TACTGTCTTT
Statistics
Matches: 277, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
86 1 0.00
87 253 0.91
88 23 0.08
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (88 bp):
CTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTC
Found at i:36937605 original size:306 final size:306
Alignment explanation
Indices: 36937261--36937995 Score: 1182
Period size: 306 Copynumber: 2.4 Consensus size: 306
36937251 AGCTATGTCC
* *
36937261 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGT
1 TCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACACGT
* * *
36937326 GAAAGCCAAATCAGCTATGTCTTTGATCTGCTCCCTGCCAATATAGAGATGCCAAATCATCTTAG
66 GAAAGCCAAATCAGTTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAG
* * *
36937391 ATTTGCTTCAATGTAAACATGTGAAAGCCAAATCAGCTATGTCCTTGATCTGCTCCCTGCCAATG
131 ATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATGTCCTCGATCTGCTCCCTGCCAATA
* *
36937456 CAAAGACGCCAAATCTACTGTCTTTGATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGTTAT
196 CAAAGACGCCAAATCTACTGTCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTAT
* * * * *
36937521 CTTCAATCTGCTCTCTGCCAATATAGAGATGCCAAATTTGCTATCT
261 CTTCAATCTACTCTCTGCCAAAACAGAGATGCCAAATCTGCTACCT
* * * *
36937567 TCGATCTGCTCTCTGACAATATAGAGACGCCAAATCATCTTGGATTTACTTCAATGTAAACATGT
1 TCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACACGT
*
36937632 GAAAGCCAAATCAGTTATGTCTTCGATCTGCTCCCTTCCAATACAGAGATGCCAAATCATCTTAG
66 GAAAGCCAAATCAGTTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAG
36937697 ATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATGTCCTCGATCTGCTCCCTGCCAATA
131 ATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATGTCCTCGATCTGCTCCCTGCCAATA
* * * *
36937762 CAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCAATGCAGAGATGCCAAATTTGTTAT
196 CAAAGACGCCAAATCTACTGTCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTAT
36937827 CTTCAATCTACTCTCTGCCAAAACAGAGATGCCAAATCTGCTACCT
261 CTTCAATCTACTCTCTGCCAAAACAGAGATGCCAAATCTGCTACCT
* * * * *
36937873 TTGATTTGCTTTCTGACAATACAAAGACGCCAAATCATCTTGGATTTGCTTTAACGTAAACACGT
1 TCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACACGT
* * *
36937938 GAAAGCCAAATTAGTTATGTCTTCAATTTGCTCCCTGCCAATACAGAGATGCCAAATC
66 GAAAGCCAAATCAGTTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATC
36937996 TGTTATCTTC
Statistics
Matches: 392, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
306 392 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (306 bp):
TCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACACGT
GAAAGCCAAATCAGTTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAG
ATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATGTCCTCGATCTGCTCCCTGCCAATA
CAAAGACGCCAAATCTACTGTCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTAT
CTTCAATCTACTCTCTGCCAAAACAGAGATGCCAAATCTGCTACCT
Found at i:36937674 original size:87 final size:87
Alignment explanation
Indices: 36937564--36937776 Score: 336
Period size: 87 Copynumber: 2.4 Consensus size: 87
36937554 AAATTTGCTA
* * * *
36937564 TCTTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCATCTTGGATTTACTTCAATGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTACTTCAATGTAAACA
* *
36937629 TGTGAAAGCCAAATCAGTTATG
66 CGTGAAAGCCAAATCAGCTATG
* * *
36937651 TCTTCGATCTGCTCCCTTCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTACTTCAATGTAAACA
36937716 CGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
*
36937738 TCCTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
36937777 TGCTGTCTTC
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 114 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (87 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTACTTCAATGTAAACA
CGTGAAAGCCAAATCAGCTATG
Found at i:36937947 original size:219 final size:219
Alignment explanation
Indices: 36937670--36938083 Score: 639
Period size: 219 Copynumber: 1.9 Consensus size: 219
36937660 TGCTCCCTTC
* * *
36937670 CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCT
1 CAATACAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCT
* *
36937735 ATGTCCTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTG
66 ATGTCCTCAATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * * *
36937800 CCAATGCAGAGATGCCAAATTTGTTATCTTCAATCTACTCTCTGCCAAAACAGAGATGCCAAATC
131 CCAATACAGAGATGCCAAATCTGTCATCTTCAATCTACTCCCTGACAAAACAGAGATGCCAAATC
36937865 TGCTACCTTTGATTTGCTTTCTGA
196 TGCTACCTTTGATTTGCTTTCTGA
* * * *
36937889 CAATACAAAGACGCCAAATCATCTTGGATTTGCTTTAACGTAAACACGTGAAAGCCAAATTAGTT
1 CAATACAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCT
* * * *
36937954 ATGTCTTCAATTTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTG
66 ATGTCCTCAATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * *
36938019 CCAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAAATC
131 CCAATACAGAGATGCCAAATCTGTCATCTTCAATCTACTCCCTGACAAAACAGAGATGCCAAATC
36938084 ATCTTGGATC
Statistics
Matches: 174, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
219 174 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (219 bp):
CAATACAAAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCT
ATGTCCTCAATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
CCAATACAGAGATGCCAAATCTGTCATCTTCAATCTACTCCCTGACAAAACAGAGATGCCAAATC
TGCTACCTTTGATTTGCTTTCTGA
Found at i:36939073 original size:7 final size:7
Alignment explanation
Indices: 36939061--36939107 Score: 53
Period size: 7 Copynumber: 6.6 Consensus size: 7
36939051 CCTCTCCTTG
36939061 TTTTTTC
1 TTTTTTC
36939068 TTTTTTC
1 TTTTTTC
36939075 TCTTTTT-
1 T-TTTTTC
36939082 TCTTTTTC
1 T-TTTTTC
36939090 TTTTTTC
1 TTTTTTC
36939097 TCTTTTT-
1 T-TTTTTC
36939104 TTTT
1 TTTT
36939108 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 3 0.08
7 23 0.62
8 11 0.30
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:36939077 original size:22 final size:22
Alignment explanation
Indices: 36939052--36939099 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
36939042 TCACCTTGGC
36939052 CTCTCCTTGT-TTTTTCTTTTTT
1 CTCT-CTTGTCTTTTTCTTTTTT
* *
36939074 CTCTTTTTTCTTTTTCTTTTTT
1 CTCTCTTGTCTTTTTCTTTTTT
36939096 CTCT
1 CTCT
36939100 TTTTTTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (22 bp):
CTCTCTTGTCTTTTTCTTTTTT
Found at i:36939078 original size:9 final size:8
Alignment explanation
Indices: 36939061--36939105 Score: 51
Period size: 9 Copynumber: 5.8 Consensus size: 8
36939051 CCTCTCCTTG
36939061 TTTTTTC-
1 TTTTTTCT
36939068 TTTTTTCT
1 TTTTTTCT
36939076 CTTTTTTC-
1 -TTTTTTCT
36939084 -TTTTTCT
1 TTTTTTCT
36939091 TTTTTCTCT
1 TTTTT-TCT
36939100 TTTTTT
1 TTTTTT
36939106 TTGAAATAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
6 6 0.18
7 7 0.21
8 5 0.15
9 15 0.45
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTCT
Found at i:36939093 original size:13 final size:13
Alignment explanation
Indices: 36939070--36939107 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
36939060 GTTTTTTCTT
36939070 TTTTCTCTTTTTTC
1 TTTT-TCTTTTTTC
36939084 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
36939097 TCTTTT-TTTTT
1 T-TTTTCTTTTT
36939108 GAAATAGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:36939100 original size:22 final size:22
Alignment explanation
Indices: 36939062--36939104 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
36939052 CTCTCCTTGT
36939062 TTTTTCTTTTTTCTCTTTTTTC
1 TTTTTCTTTTTTCTCTTTTTTC
36939084 TTTTTCTTTTTTCTCTTTTTT
1 TTTTTCTTTTTTCTCTTTTTT
36939105 TTTGAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTCTTTTTTCTCTTTTTTC
Found at i:36944288 original size:19 final size:19
Alignment explanation
Indices: 36944251--36944350 Score: 159
Period size: 19 Copynumber: 5.3 Consensus size: 19
36944241 CATGATTACA
36944251 ATATCATATCTTCAAGATTGC
1 ATATCATATC-T-AAGATTGC
36944272 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
36944291 ATATCATATCTAAGATTG-
1 ATATCATATCTAAGATTGC
*
36944309 -TATCATATCTAAGATCGC
1 ATATCATATCTAAGATTGC
36944327 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
36944346 ATATC
1 ATATC
36944351 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.21
19 48 0.64
20 1 0.01
21 10 0.13
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:36944319 original size:36 final size:37
Alignment explanation
Indices: 36944251--36944350 Score: 148
Period size: 36 Copynumber: 2.6 Consensus size: 37
36944241 CATGATTACA
*
36944251 ATATCATATCTTCAAGATTGCATATCATATCTAAGATTGC
1 ATATCATATC-T-AAGATTG-ATATCATATCTAAGATCGC
36944291 ATATCATATCTAAGATTG-TATCATATCTAAGATCGC
1 ATATCATATCTAAGATTGATATCATATCTAAGATCGC
36944327 ATATCATATCTAAGATTGCATATC
1 ATATCATATCTAAGATTG-ATATC
36944351 CTTAAAGATT
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
36 35 0.61
38 11 0.19
39 1 0.02
40 10 0.18
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (37 bp):
ATATCATATCTAAGATTGATATCATATCTAAGATCGC
Found at i:36951548 original size:93 final size:93
Alignment explanation
Indices: 36951436--36951607 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36951426 CGCCCATAAG
* *
36951436 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36951501 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36951529 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36951594 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36951608 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36951604 original size:46 final size:46
Alignment explanation
Indices: 36951429--36951604 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36951419 TGTAACCCGC
* * *
36951429 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36951475 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36951525 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36951568 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36951605 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36968761 original size:43 final size:43
Alignment explanation
Indices: 36968593--36968749 Score: 244
Period size: 43 Copynumber: 3.7 Consensus size: 43
36968583 ATATTGTACA
*
36968593 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
36968636 ATGCC-ACTGTCGCAGACGTGGTCTTACACGTAATCATATATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
36968679 ATGCTAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
36968722 ATGCCAACGTTCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
36968750 GGAGAACACA
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 2 0.02
43 98 0.96
44 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Done.