Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 113 of 373
Found at i:36973466 original size:43 final size:43
Alignment explanation
Indices: 36973417--36973544 Score: 172
Period size: 43 Copynumber: 3.0 Consensus size: 43
36973407 GATTACTGAG
*
36973417 ATGTGATTACATGTAAGACCATATTTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGA-ATTGGCATTGTAT
*
36973461 -TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTG-AT
1 ATGTGATTACATGTAAGACCATATCTGGGA-ATTGGCATTGTAT
* *
36973503 ATGTGATAATATGTAAGACCATATCTGGG-ATGTGGCATTGTA
1 ATGTGATTACATGTAAGACCATATCTGGGAAT-TGGCATTGTA
36973545 CAAGCTATAT
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.03
42 10 0.13
43 63 0.84
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGAATTGGCATTGTAT
Found at i:36976854 original size:40 final size:40
Alignment explanation
Indices: 36976797--36977018 Score: 342
Period size: 40 Copynumber: 5.6 Consensus size: 40
36976787 TATTCGAATG
*
36976797 ATATCCGGGCTATGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
36976837 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36976877 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36976917 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
36976957 ATATCCGGGCTAAGACCCGAAGGCATGTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-A-TTGACT
* *
36976997 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36977019 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.08
40 153 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:36988957 original size:40 final size:40
Alignment explanation
Indices: 36988902--36989163 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
36988892 TATTCGAATG
*
36988902 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36988942 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
36988982 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36989022 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
36989062 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
36989102 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
36989142 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36989164 TACTTGGGTT
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 14 0.07
40 192 0.92
41 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:36993286 original size:31 final size:32
Alignment explanation
Indices: 36993248--36993319 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 32
36993238 GAAACAGGGT
* *
36993248 CACACGCCCGTGTGGG-TAGGCCGTGTGGTCA
1 CACACGCCCGTGTGGGTTAAGCCATGTGGTCA
* *
36993279 CACACGCCTGTGTGGGTTAAGCCATGTGGTGA
1 CACACGCCCGTGTGGGTTAAGCCATGTGGTCA
*
36993311 CACATGCCC
1 CACACGCCC
36993320 ATATGGCTCG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 15 0.44
32 19 0.56
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (32 bp):
CACACGCCCGTGTGGGTTAAGCCATGTGGTCA
Found at i:36995013 original size:28 final size:28
Alignment explanation
Indices: 36994968--36995042 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
36994958 ATCTTCGATG
*
36994968 TCTCGCACACTAAATGCCATACTCAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
*
36994996 TCTCGCACA-TCAAGTGCCATTCTCAATA
1 TCTCGCACACT-AAGTGCCATACTCAATA
* *
36995024 TTTTGCACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
36995043 CATATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.02
28 39 0.95
29 1 0.02
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.28
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATACTCAATA
Found at i:36995139 original size:40 final size:40
Alignment explanation
Indices: 36995053--36995128 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
36995043 CATATATATA
36995053 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCACATT
* * *
36995093 TAGCCGAAGCTATTTCAAATTGCACACTAAGTGCCA
1 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCA
36995129 TTCTTAGCCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCACATT
Found at i:36995373 original size:21 final size:20
Alignment explanation
Indices: 36995336--36995374 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
36995326 AAATAATCAA
*
36995336 ATTCAACTAATTTAATCATT
1 ATTCAACTAATTCAATCATT
*
36995356 ATTCTACTCAATTCAATCA
1 ATTCAACT-AATTCAATCA
36995375 AATTTCATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTCAACTAATTCAATCATT
Found at i:36996875 original size:6 final size:6
Alignment explanation
Indices: 36996845--36996913 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
36996835 AAGAAACATT
* * * *
36996845 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
36996894 ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
36996914 TAGGTGACAA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:36996904 original size:31 final size:31
Alignment explanation
Indices: 36996866--36996965 Score: 137
Period size: 31 Copynumber: 3.2 Consensus size: 31
36996856 AATCAAAATG
*
36996866 AGAATCAGAATCAAAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* * *
36996897 AGAATCAGAATCAGAATTAGGTGACAAAATT
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* *
36996928 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
36996959 AAAATCA
1 AGAATCA
36996966 AAATGTGAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:36997508 original size:27 final size:27
Alignment explanation
Indices: 36997476--36997928 Score: 576
Period size: 27 Copynumber: 16.8 Consensus size: 27
36997466 ACCCAAAATG
36997476 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
36997503 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
36997530 GTAATTCTGTAAATCGAGGGTAAAAC-
1 GTAATTTTATAAATCGAGGGTAAAACA
* * * *
36997556 GATAATTCTATAAATTGAGGATAAAATA
1 G-TAATTTTATAAATCGAGGGTAAAACA
*
36997584 GTAATTTTGTAAATCGAGGGTAAAAC-
1 GTAATTTTATAAATCGAGGGTAAAACA
36997610 GATAATTTTATAAATCGA-GGTAAAACA
1 G-TAATTTTATAAATCGAGGGTAAAACA
36997637 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
*
36997664 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
*
36997691 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
* * *
36997718 GTAATTCTATAAATCGAGGATAAAA-T
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
36997744 GATAATTATATAAATCGAGGGTAAAATA
1 G-TAATTTTATAAATCGAGGGTAAAACA
* *
36997772 GTAATTTTGTAAATCGAGGGTAAAA-T
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
36997798 GATAATTTTGTAAATTGAGGGTAAAACA
1 G-TAATTTTATAAATCGAGGGTAAAACA
*
36997826 GTAA-TTCAGTAAATCGAGGGTAAAACA
1 GTAATTTTA-TAAATCGAGGGTAAAACA
*
36997853 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
* * *
36997880 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACA
* *
36997907 GTAATTCTATAAATTGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
36997929 CTTTGGTAAT
Statistics
Matches: 380, Mismatches: 35, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
26 30 0.08
27 345 0.91
28 5 0.01
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACA
Found at i:36997952 original size:27 final size:26
Alignment explanation
Indices: 36997922--36998102 Score: 148
Period size: 27 Copynumber: 6.7 Consensus size: 26
36997912 TCTATAAATT
*
36997922 GAGGGTACTTTGGTAATTTTACAAGTC
1 GAGGGTATTTTGGTAATTTTACAA-TC
** * *
36997949 GAGGGTATTTCAGTAATTTTACATGTT
1 GAGGGTATTTTGGTAATTTTACA-ATC
** *
36997976 GAGGTGTATTTCAGTAATTTCACAAATC
1 GAGG-GTATTTTGGTAATTTTAC-AATC
*
36998004 -AGAGGTATTTTGGTAATTTTACAAAC
1 GAG-GGTATTTTGGTAATTTTACAATC
* *
36998030 TAGGGGTATTTTGGTAATTTTACAAAC
1 GA-GGGTATTTTGGTAATTTTACAATC
* * *
36998057 CAGGGGTATTTTGGTAATTTTATAAACC
1 GA-GGGTATTTTGGTAATTTTA-CAATC
*
36998085 AAGGGTATTTTGGTAATT
1 GAGGGTATTTTGGTAATT
36998103 CTACCCTACA
Statistics
Matches: 131, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.02
27 103 0.79
28 24 0.18
29 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GAGGGTATTTTGGTAATTTTACAATC
Found at i:36998116 original size:54 final size:54
Alignment explanation
Indices: 36997989--36998106 Score: 166
Period size: 54 Copynumber: 2.2 Consensus size: 54
36997979 GTGTATTTCA
* * * *
36997989 GTAATT-TCACAAATCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTCT-ACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
* *
36998043 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTG
1 GTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
36998097 GTAATTCTAC
1 GTAATTCTAC
36998107 CCTACAGGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
GTAATTCTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
Found at i:36998121 original size:27 final size:27
Alignment explanation
Indices: 36998097--36998167 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
36998087 GGGTATTTTG
36998097 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
36998124 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
36998151 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
36998168 ATATGAGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:36998128 original size:54 final size:54
Alignment explanation
Indices: 36998016--36998129 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
36998006 AGGTATTTTG
* * * * **
36998016 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACCAGGGGCATTTCA
* **
36998070 GTAATTTTATAAACCAAGGGTATTTTGGTAATTCTACCCTA-CAGGGGCATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA-CAAACCAGGGGCATTTCA
36998124 GTAATT
1 GTAATT
36998130 CTACCCTACA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 48 0.96
55 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACCAGGGGCATTTCA
Found at i:37001693 original size:42 final size:42
Alignment explanation
Indices: 37001625--37001853 Score: 251
Period size: 42 Copynumber: 5.3 Consensus size: 42
37001615 CATTCCAACT
* * *
37001625 ATGGTCTTACACGAAGTCTCACATCGATGCCATGTCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
* * * **
37001667 ATAGTCTTATACGAAATCACATATCGATGCCGCATCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
* * * * *
37001709 ACGGTCTTACACGAAATCTCATACCGAAGCCATATCCCATAT
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
* *
37001751 ATGGTCTTACACGTAATCTCATATCGATGCTAATGCCATATCCCAGAT
1 ATGGTCTTACACGAAATCTCATATC---G---ATGCCATATCCCAGAC
* *
37001799 ATGGTCTTACACGAGATCTCATATCGATGCCATGTCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
37001841 ATGGTCTTACACG
1 ATGGTCTTACACG
37001854 TATCACAATG
Statistics
Matches: 154, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
42 115 0.75
45 2 0.01
48 37 0.24
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
Found at i:37001790 original size:48 final size:48
Alignment explanation
Indices: 37001737--37001828 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
37001727 TCATACCGAA
*
37001737 GCCATATCCCATATATGGTCTTACACGTA-ATCTCATATCGATGCTAAT
1 GCCATATCCCAGATATGGTCTTACACG-AGATCTCATATCGATGCTAAT
37001785 GCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
1 GCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
37001829 CATGTCCCAG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 1 0.02
48 41 0.98
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCTAAT
Found at i:37001916 original size:37 final size:36
Alignment explanation
Indices: 37001823--37001961 Score: 149
Period size: 37 Copynumber: 3.8 Consensus size: 36
37001813 GATCTCATAT
37001823 CGATGCCAT-GTCCCAGAC-ATGGTCTTACACGT-ATCA
1 CGATGCCATAG-CCCA-ACTATGGTCTTACAC-TCATCA
* * *
37001859 CAATGGCATAGCCCAGCTATGGTCTTACATCTCATCA
1 CGATGCCATAGCCCAACTATGGTCTTACA-CTCATCA
* * *
37001896 TGATGCCATAGCCCAACTATGGTCTTACACACTATTA
1 CGATGCCATAGCCCAACTATGGTCTTACACTC-ATCA
*
37001933 CGATGCCATAGCCCAGCTATGGTCTTACA
1 CGATGCCATAGCCCAACTATGGTCTTACA
37001962 AATACTCACA
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
35 1 0.01
36 25 0.29
37 61 0.70
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (36 bp):
CGATGCCATAGCCCAACTATGGTCTTACACTCATCA
Found at i:37001918 original size:73 final size:74
Alignment explanation
Indices: 37001782--37001961 Score: 206
Period size: 74 Copynumber: 2.4 Consensus size: 74
37001772 TATCGATGCT
* *
37001782 AATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCCATGTCCCAGACATGGTC
1 AATGCCATAGCCCAGCTATGGTCTT--AC---ATCTCATATCGATGCCATGTCCCAGACATGGTC
*
37001847 TTACAC-GTATCAC
61 TTACACACTATCAC
*
37001860 AATGGCATAGCCCAGCTATGGTCTTACATCTCATCAT-GATGCCATAG-CCCA-ACTATGGTCTT
1 AATGCCATAGCCCAGCTATGGTCTTACATCTCAT-ATCGATGCCAT-GTCCCAGAC-ATGGTCTT
*
37001922 ACACACTATTAC
63 ACACACTATCAC
*
37001934 GATGCCATAGCCCAGCTATGGTCTTACA
1 AATGCCATAGCCCAGCTATGGTCTTACA
37001962 AATACTCACA
Statistics
Matches: 91, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
72 2 0.02
73 31 0.34
74 34 0.37
76 2 0.02
78 22 0.24
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (74 bp):
AATGCCATAGCCCAGCTATGGTCTTACATCTCATATCGATGCCATGTCCCAGACATGGTCTTACA
CACTATCAC
Found at i:37002904 original size:31 final size:32
Alignment explanation
Indices: 37002863--37002930 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
37002853 GAAACAGGGT
* **
37002863 CACACGCCCGTGTGGG-TAGGCCGTGTGGTCA
1 CACACACCCGTGTGGGTTAGAACGTGTGGTCA
37002894 CACACACCCGTGTGGGTTAGAACGTGTGGTCA
1 CACACACCCGTGTGGGTTAGAACGTGTGGTCA
37002926 CACAC
1 CACAC
37002931 GCCTGTATGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 15 0.45
32 18 0.55
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (32 bp):
CACACACCCGTGTGGGTTAGAACGTGTGGTCA
Found at i:37004768 original size:40 final size:40
Alignment explanation
Indices: 37004719--37004794 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
37004709 CACATATATA
37004719 TAGCCGAAGCTATCTCAAA-TCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCAAACT-GCACACCAAGTGCCACATT
* * *
37004759 TAGCCGAAGCTATTTTAAACTGCACACTAAGTGCCA
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCA
37004795 TTCTTAGTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 31 0.97
41 1 0.03
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCACATT
Found at i:37020673 original size:79 final size:82
Alignment explanation
Indices: 37020562--37020746 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37020552 GCTACTCGTT
* * *
37020562 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37020625 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37020642 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37020705 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37020722 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37020747 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37020746 original size:40 final size:40
Alignment explanation
Indices: 37020543--37020746 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37020533 CGGAATTTAA
** *
37020543 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37020583 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37020623 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37020662 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37020702 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37020742 CCGGA
1 CCGGA
37020747 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37028614 original size:79 final size:81
Alignment explanation
Indices: 37028504--37028684 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
37028494 CTACTCGTTG
* * *
37028504 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGG
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
37028568 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
* **
37028584 AAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 AAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
37028647 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
37028664 AAA-GCCTTCGGGACTTAGCCC
1 AAATGCCTTCGGGACTTAGCCC
37028685 AGACATCATT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 54 0.62
80 29 0.33
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:37028620 original size:39 final size:40
Alignment explanation
Indices: 37028504--37028684 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
37028494 CTACTCGTTG
*
37028504 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC
* *
37028544 AATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
37028584 AAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * *
37028623 AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC
1 AAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
37028664 AAA-GCCTTCGGGACTTAGCCC
1 AAATGCCTTCGGGACTTAGCCC
37028685 AGACATCATT
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 73 0.60
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:37034188 original size:28 final size:28
Alignment explanation
Indices: 37034155--37034253 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
37034145 ATGAATATAG
37034155 GCACTATGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
** * **
37034183 GCACTATGTGTGCGAGA-TCGGTCAGTG-
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
37034210 GACACTGTGTGTGCGAATTCTTTAACCGA
1 G-CACTATGTGTGCGAATTCTTTAACCGA
37034239 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
37034254 GATCGGTCAG
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 2 0.04
28 51 0.93
29 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:37034222 original size:56 final size:56
Alignment explanation
Indices: 37034156--37034280 Score: 232
Period size: 56 Copynumber: 2.2 Consensus size: 56
37034146 TGAATATAGG
*
37034156 CACTATGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
*
37034212 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGG
1 CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
37034268 CACTGTGTGTGCG
1 CACTGTGTGTGCG
37034281 GATTTCGTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (56 bp):
CACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGGA
Found at i:37034270 original size:28 final size:28
Alignment explanation
Indices: 37034183--37034280 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
37034173 CTTTAACCGA
37034183 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * ** * ** *
37034211 ACACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
37034239 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
37034267 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
37034281 GATTTCGTTT
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
27 1 0.02
28 49 0.96
29 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:37041610 original size:39 final size:39
Alignment explanation
Indices: 37041567--37041653 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
37041557 CCGGTAATTT
*
37041567 GCCTGCTAGGTATAAACTTGAACTTAACACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
* *
37041606 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
*
37041645 GCCTACTAG
1 GCCTGCTAG
37041654 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
Found at i:37044627 original size:19 final size:19
Alignment explanation
Indices: 37044556--37044629 Score: 82
Period size: 19 Copynumber: 4.1 Consensus size: 19
37044546 TTAATCATTC
*
37044556 ATACGTACCTAGACAATTT
1 ATACGTACCTGGACAATTT
* *
37044575 ATACATACTTGGACAATTT
1 ATACGTACCTGGACAATTT
* *
37044594 ATATGTA--T-AACAATTT
1 ATACGTACCTGGACAATTT
37044610 ATACGTACCTGGACAATTT
1 ATACGTACCTGGACAATTT
37044629 A
1 A
37044630 ATCTATTGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
16 13 0.30
17 1 0.02
18 1 0.02
19 29 0.66
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (19 bp):
ATACGTACCTGGACAATTT
Found at i:37044747 original size:39 final size:39
Alignment explanation
Indices: 37044704--37044790 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
37044694 CCGGCAATTT
*
37044704 GCCTGCTAGGTATAAACTTGAACTTAACACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
* * *
37044743 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAT
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
37044782 GCCTGCTAG
1 GCCTGCTAG
37044791 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
Found at i:37051497 original size:52 final size:51
Alignment explanation
Indices: 37051377--37051554 Score: 245
Period size: 52 Copynumber: 3.5 Consensus size: 51
37051367 ACTAGTGACT
* *
37051377 CAAGTGTGGTACTATGTGAAGGCAACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
37051426 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * *
37051478 CAAGTGTGGTACTATGTGAAGTCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* * *
37051529 TAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
37051555 CGGGTATCCG
Statistics
Matches: 116, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
49 33 0.28
50 2 0.02
51 40 0.34
52 41 0.35
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:37057724 original size:24 final size:24
Alignment explanation
Indices: 37057697--37057816 Score: 132
Period size: 24 Copynumber: 5.0 Consensus size: 24
37057687 GTCAAGTTGC
*
37057697 ACGTTGTGGACAAGCCACTCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
* * *
37057721 ACGTTGTTGCCAAGCCAGTCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
* **
37057745 ACATTGTTTTCAAGCCACTCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
* *
37057769 ATGTTGTGGTCAAGCCACCCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
* * *
37057793 ACATTGTGGTTAAACCACTCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
37057817 TTGCAGTAAA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 79 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (24 bp):
ACGTTGTGGTCAAGCCACTCAATA
Found at i:37060266 original size:20 final size:20
Alignment explanation
Indices: 37060241--37060279 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37060231 AGATAATCTG
37060241 AAAAACCCGATTCATTAGGA
1 AAAAACCCGATTCATTAGGA
37060261 AAAAACCCGATTCATTAGG
1 AAAAACCCGATTCATTAGG
37060280 TCCATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (20 bp):
AAAAACCCGATTCATTAGGA
Found at i:37062201 original size:27 final size:27
Alignment explanation
Indices: 37062147--37062201 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
37062137 AATATATAAT
*
37062147 AATTATAAAAAAATTAAATTGTACTTA
1 AATTATAAAAAAATTAAATTGTAATTA
* * * *
37062174 AATTATTAAAATATTGAATTTTAATTA
1 AATTATAAAAAAATTAAATTGTAATTA
37062201 A
1 A
37062202 TTTTTTAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (27 bp):
AATTATAAAAAAATTAAATTGTAATTA
Found at i:37074523 original size:28 final size:28
Alignment explanation
Indices: 37074448--37074658 Score: 222
Period size: 28 Copynumber: 7.6 Consensus size: 28
37074438 TATCTAGGAT
* * *
37074448 ATGGCAATGTGCTGAGTGAAATAGGACC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
37074476 ATGGC-A--T-CTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
* * *
37074500 ATGGAAATATGCTAAGTAAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
* * *
37074528 ATGACAATGTGGTAAGTGAAATAAGACC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
*
37074556 ATTGC-AT-T--TAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
37074580 ATGGCAATGTGCTAAGTCTAAGTGAAATAAGTCC
1 ATGGCAA--TG-T--G-CTAAGTGAAATAAGTCC
37074614 ATGGCAATGTGCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCC
37074642 ATGGCAATGTGCTAAGT
1 ATGGCAATGTGCTAAGT
37074659 CTAAGTGAAA
Statistics
Matches: 154, Mismatches: 15, Indels: 28
0.78 0.08 0.14
Matches are distributed among these distances:
24 37 0.24
25 3 0.02
26 1 0.01
27 5 0.03
28 80 0.52
29 2 0.01
31 1 0.01
32 2 0.01
34 23 0.15
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (28 bp):
ATGGCAATGTGCTAAGTGAAATAAGTCC
Found at i:37074549 original size:80 final size:83
Alignment explanation
Indices: 37074452--37074647 Score: 263
Period size: 80 Copynumber: 2.4 Consensus size: 83
37074442 TAGGATATGG
* *
37074452 CAATGTGCTGAGTGAAATAGGACCATGGCATCTAAGTGAAATAAGTCCATGGAAATATGCTAAG-
1 CAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGAAATATGCTAAGC
37074516 T-A-AAATAAGTCCATGA
66 TAAGAAATAAGTCCATGA
* * * * *
37074532 CAATGTGGTAAGTGAAATAAGACCATTGCATTTAAGTGAAATAAGTCCATGGCAATGTGCTAAGT
1 CAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGAAATATGCTAAG-
*
37074597 CTAAGTGAAATAAGTCCATGG
65 CTAA--GAAATAAGTCCATGA
*
37074618 CAATGTGCTAAGTGAAATAAGTCCATGGCA
1 CAATGTGCTAAGTGAAATAAGACCATGGCA
37074648 ATGTGCTAAG
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
80 57 0.58
82 1 0.01
83 1 0.01
86 40 0.40
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (83 bp):
CAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGAAATATGCTAAGC
TAAGAAATAAGTCCATGA
Found at i:37074602 original size:34 final size:34
Alignment explanation
Indices: 37074564--37074683 Score: 189
Period size: 34 Copynumber: 3.7 Consensus size: 34
37074554 CCATTGCATT
37074564 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTC
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTC
37074598 TAAGTGAAATAAGTCCATGGCAA--TG-T--G-C
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTC
37074626 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTC
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTC
*
37074660 TAAGTGAAATAAGTCCACGGCAAT
1 TAAGTGAAATAAGTCCATGGCAAT
37074684 AGAATTATAA
Statistics
Matches: 79, Mismatches: 1, Indels: 12
0.86 0.01 0.13
Matches are distributed among these distances:
28 24 0.30
29 1 0.01
30 2 0.03
31 2 0.03
32 2 0.03
33 1 0.01
34 47 0.59
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (34 bp):
TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTC
Found at i:37074638 original size:62 final size:61
Alignment explanation
Indices: 37074482--37074683 Score: 269
Period size: 62 Copynumber: 3.4 Consensus size: 61
37074472 GACCATGGCA
* * *
37074482 TCTAAGTGAAATAAGTCCATGGAAATATGCTAAGTAAAATAAGTCCATGACAATGTG----G
1 TCTAAGTGAAATAAGTCCATGGCAAT-TGCTAAGTGAAATAAGTCCATGGCAATGTGCTAAG
* *
37074540 --TAAGTGAAATAAGACCATTGC-ATT--TAAGTGAAATAAGTCCATGGCAATGTGCTAAG
1 TCTAAGTGAAATAAGTCCATGGCAATTGCTAAGTGAAATAAGTCCATGGCAATGTGCTAAG
37074596 TCTAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCAATGTGCTAAG
1 TCTAAGTGAAATAAGTCCATGGCAAT-TGCTAAGTGAAATAAGTCCATGGCAATGTGCTAAG
*
37074658 TCTAAGTGAAATAAGTCCACGGCAAT
1 TCTAAGTGAAATAAGTCCATGGCAAT
37074684 AGAATTATAA
Statistics
Matches: 126, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
52 25 0.20
54 1 0.01
55 2 0.02
56 19 0.15
58 19 0.15
59 2 0.02
60 1 0.01
62 57 0.45
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (61 bp):
TCTAAGTGAAATAAGTCCATGGCAATTGCTAAGTGAAATAAGTCCATGGCAATGTGCTAAG
Found at i:37076856 original size:34 final size:34
Alignment explanation
Indices: 37076818--37076969 Score: 150
Period size: 34 Copynumber: 4.5 Consensus size: 34
37076808 TTCATGCATT
*
37076818 TTAAGCTGCTGGAATAAATGTTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATGTTCATCTTAGTTAA
* *
37076852 TTAAGTTGCTAGAATAAATGGTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATGTTCATCTTAGTTAA
* * *
37076886 TTGAGTTGTTGGAATAAATGCTT-ATTTTAGTTAA
1 TTAAGTTGCTGGAATAAATG-TTCATCTTAGTTAA
* * * **
37076920 TTAA-TTGCTAGAATAATTACTT-ATCTTAGTTTCT
1 TTAAGTTGCTGGAATAAAT-GTTCATCTTAG-TTAA
37076954 TTAA-TTGCTGGAATAA
1 TTAAGTTGCTGGAATAA
37076970 CTTATTGATA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
33 19 0.19
34 78 0.80
35 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (34 bp):
TTAAGTTGCTGGAATAAATGTTCATCTTAGTTAA
Found at i:37076966 original size:67 final size:68
Alignment explanation
Indices: 37076824--37076969 Score: 179
Period size: 67 Copynumber: 2.2 Consensus size: 68
37076814 CATTTTAAGC
**
37076824 TGCTGGAATAAATGTTCATCTTAGTTAATTAAGTTGCTAGAATAAATGGTCATCTTAGTTAATTG
1 TGCTGGAATAAATGTTCATCTTAGTTAATTAAGTTGCTAGAATAAATACTCATCTTAGTTAATTG
*
37076889 AGT
66 AAT
* * * * **
37076892 TGTTGGAATAAATGCTT-ATTTTAGTTAATTAA-TTGCTAGAATAATTACTTATCTTAGTTTCTT
1 TGCTGGAATAAATG-TTCATCTTAGTTAATTAAGTTGCTAGAATAAATACTCATCTTAGTTAATT
*
37076955 TAAT
65 GAAT
37076959 TGCTGGAATAA
1 TGCTGGAATAA
37076970 CTTATTGATA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
67 37 0.56
68 27 0.41
69 2 0.03
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (68 bp):
TGCTGGAATAAATGTTCATCTTAGTTAATTAAGTTGCTAGAATAAATACTCATCTTAGTTAATTG
AAT
Found at i:37077097 original size:12 final size:11
Alignment explanation
Indices: 37077063--37077097 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
37077053 ATTAAGTATA
*
37077063 GTGTGTTTAAT
1 GTGTTTTTAAT
37077074 GTGTTTTTAAT
1 GTGTTTTTAAT
37077085 GTGTTTGTTAAT
1 GTGTTT-TTAAT
37077097 G
1 G
37077098 CTTGTAGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.17, C:0.00, G:0.26, T:0.57
Consensus pattern (11 bp):
GTGTTTTTAAT
Found at i:37078094 original size:9 final size:10
Alignment explanation
Indices: 37078076--37078100 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37078066 TGTATTTCAT
37078076 TTGAAAAAAA
1 TTGAAAAAAA
37078086 TTGAAAAAAA
1 TTGAAAAAAA
37078096 TTGAA
1 TTGAA
37078101 TTTTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (10 bp):
TTGAAAAAAA
Found at i:37080553 original size:40 final size:40
Alignment explanation
Indices: 37080470--37080692 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 40
37080460 TTGAATGCTG
* * * * *
37080470 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
37080510 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
37080550 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** *
37080590 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTGAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
37080630 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
37080669 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37080693 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
39 33 0.21
40 113 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:37080607 original size:80 final size:79
Alignment explanation
Indices: 37080470--37080694 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 79
37080460 TTGAATGCTG
* * * * * *
37080470 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
37080533 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
37080550 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
** *
37080615 GTGCGAATTGTTGAA
65 GTGCGAATTACTAAA
* * * *
37080630 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
37080694 G
65 G
37080695 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 80 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:37080712 original size:79 final size:80
Alignment explanation
Indices: 37080548--37080727 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 80
37080538 CGAGATACTA
** *
37080548 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAT
** ** *
37080613 TCGTGCGAATTGTTG
66 TCGAACGAAGAGCTG
* * *
37080628 AATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAT
* *
37080692 TTGAACGAGGAGCT-
66 TCGAACGAAGAGCTG
*
37080706 ATATCC-GGTTAAATCCCGAAGG
1 A-ATCCGGGTTAAGTCCCGAAGG
37080728 TACGTGATTT
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
78 15 0.18
79 44 0.52
80 25 0.30
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAT
TCGAACGAAGAGCTG
Found at i:37083433 original size:61 final size:61
Alignment explanation
Indices: 37083334--37083457 Score: 230
Period size: 61 Copynumber: 2.0 Consensus size: 61
37083324 TTGTTCTAAA
* *
37083334 TTGTGGTTAAAAAGATTCGATCGTGTTTTGAAAGATTATACTATTCAATTGCTACATGTTC
1 TTGTGGTTAAAAAGATTCGATCGTGTTTTGAAAAATTATACTACTCAATTGCTACATGTTC
37083395 TTGTGGTTAAAAAGATTCGATCGTGTTTTGAAAAATTATACTACTCAATTGCTACATGTTC
1 TTGTGGTTAAAAAGATTCGATCGTGTTTTGAAAAATTATACTACTCAATTGCTACATGTTC
37083456 TT
1 TT
37083458 TCTAAGTTGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (61 bp):
TTGTGGTTAAAAAGATTCGATCGTGTTTTGAAAAATTATACTACTCAATTGCTACATGTTC
Found at i:37085563 original size:27 final size:26
Alignment explanation
Indices: 37085531--37085854 Score: 177
Period size: 27 Copynumber: 12.0 Consensus size: 26
37085521 TTGGTAAATC
*
37085531 TACAAACCAAGGGTATTTTCATAATTT
1 TACAAATCAAGGGTA-TTTCATAATTT
* * * *
37085558 TGCAAACCAATGGTATTTCTGTAATTT
1 TACAAATCAAGGGTATTTC-ATAATTT
** *
37085585 TTGAAAGTCAAGGGTATTTCTGTAATTT
1 TACAAA-TCAAGGGTATTTC-ATAATTT
** ***
37085613 TGTAAATTTGGGGTATTTCTATAATTT
1 TACAAATCAAGGGTATTTC-ATAATTT
* *
37085640 TCCAAATCAAGGGTCTTTCGATAATTT
1 TACAAATCAAGGGTATTTC-ATAATTT
* * * **
37085667 TCCAAATTAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTA-TTTCATAATTT
* *
37085694 TAAAAATTAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCA-TAATTT
* *
37085721 TACAAGTCGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCA-TAATTT
* * *
37085748 TATAAGTCAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTC-ATAATTT
* * *
37085775 CACAAAT-TAGGCGTATTTTGGA-AATTT
1 TACAAATCAAGG-GTA-TTT-CATAATTT
* **
37085802 TACAAA-CCAGAGGTATTTTGGTAATTT
1 TACAAATCAAG-GGTA-TTTCATAATTT
*
37085829 TACAAACCAAGGGTATTTCAGTAATT
1 TACAAATCAAGGGTATTTCA-TAATT
37085855 CTACCCTACA
Statistics
Matches: 235, Mismatches: 49, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
26 14 0.06
27 188 0.80
28 33 0.14
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
TACAAATCAAGGGTATTTCATAATTT
Found at i:37085708 original size:81 final size:81
Alignment explanation
Indices: 37085511--37085846 Score: 240
Period size: 81 Copynumber: 4.1 Consensus size: 81
37085501 TTTCACCCTA
* * * * ** * * *
37085511 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTT-TCATAATTTTGCAAACCAATGGTATT
1 CAAGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCT-ATAATTTTACAAATCAAGGGTATT
**
37085575 TCTG-TAATTTTTGAAAGT
65 TC-GATAATTTTACAAA-T
** ** * *
37085593 CAAGGGTATTTCT-GTAATTTTGTAAATTTGGGGTATTTCTATAATTTTCCAAATCAAGGGTCTT
1 CAAGGGTATTT-TGGTAATTTTAAAAATTAAGGGTATTTCTATAATTTTACAAATCAAGGGTATT
*
37085657 TCGATAATTTTCCAAAT
65 TCGATAATTTTACAAAT
* * * *
37085674 TAGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTC-AGTAATTTTACAAGTCGAGGGTATT
1 CAAGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCTA-TAATTTTACAAATCAAGGGTATT
* *
37085738 TC-AGTAATTTTATAAGT
65 TCGA-TAATTTTACAAAT
* * * *
37085755 CAAGGGTATTTCGGTAATTTCACAAATT-AGGCGTATTT-TGGA-AATTTTACAAA-CCAGAGGT
1 CAAGGGTATTTTGGTAATTTTAAAAATTAAGG-GTATTTCT--ATAATTTTACAAATCAAG-GGT
* * *
37085816 ATTTTGGTAATTTTACAAAC
62 ATTTCGATAATTTTACAAAT
37085836 CAAGGGTATTT
1 CAAGGGTATTT
37085847 CAGTAATTCT
Statistics
Matches: 202, Mismatches: 40, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
80 9 0.04
81 131 0.65
82 59 0.29
83 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCTATAATTTTACAAATCAAGGGTATTT
CGATAATTTTACAAAT
Found at i:37085801 original size:54 final size:54
Alignment explanation
Indices: 37085592--37085834 Score: 215
Period size: 54 Copynumber: 4.5 Consensus size: 54
37085582 TTTTTGAAAG
* ** * *
37085592 TCAAGGGTATTTCTGTAATTTTGTAAATTTGGGGTATTTCT--ATAATTTTCCAAA
1 TCAAGGGTATTTCGGTAATTTTACAAATTAGGGGTATTT-TGGA-AATTTTACAAA
* * * * *
37085646 TCAAGGGTCTTTCGATAATTTTCCAAATTAGGGGTATTTTGGTAATTTTAAAAA
1 TCAAGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGAAATTTTACAAA
* * * * ** * * *
37085700 TTAAGGGTATTTCAGTAATTTTAC-AAGTCGAGGGTATTTCAGTAATTTTATAAG
1 TCAAGGGTATTTCGGTAATTTTACAAATTAG-GGGTATTTTGGAAATTTTACAAA
* *
37085754 TCAAGGGTATTTCGGTAATTTCACAAATTAGGCGTATTTTGGAAATTTTACAAA
1 TCAAGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGAAATTTTACAAA
* *
37085808 -CCAGAGGTATTTTGGTAATTTTACAAA
1 TCAAG-GGTATTTCGGTAATTTTACAAA
37085835 CCAAGGGTAT
Statistics
Matches: 150, Mismatches: 34, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
53 8 0.05
54 138 0.92
55 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
TCAAGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGAAATTTTACAAA
Found at i:37085873 original size:27 final size:27
Alignment explanation
Indices: 37085843--37085918 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
37085833 AACCAAGGGT
37085843 ATTTCAGTAATTCTACCCTACAGGGAC
1 ATTTCAGTAATTCTACCCTACAGGGAC
* **
37085870 ATTTCAATAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGAC
* *
37085897 ATTTCAGTAATACTAGCCTACA
1 ATTTCAGTAATTCTACCCTACA
37085919 AATATGAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGAC
Found at i:37087289 original size:34 final size:33
Alignment explanation
Indices: 37087148--37087290 Score: 92
Period size: 34 Copynumber: 4.2 Consensus size: 33
37087138 TTTAAGCTAC
*
37087148 TGGAATAAAT-GTTCATCTTAGTTAATTAAGTT-T
1 TGGAATAAATACTT-ATCTTAGTTAATTAA-TTGT
* ** * * * *
37087181 CTAGAATAAATGGTCATCTTAGTCACTTGATTTGT
1 -TGGAATAAATACTTATCTTAGTTAATT-AATTGT
* * * *
37087216 TGGCATAAATGCTTATTTTAGTTAATTAATTGC
1 TGGAATAAATACTTATCTTAGTTAATTAATTGT
* * *
37087249 TAGAATAATTACTTATCTTAGTTTATTTAATTGT
1 TGGAATAAATACTTATCTTAG-TTAATTAATTGT
37087283 TGGAATAA
1 TGGAATAA
37087291 CTTATTGCTA
Statistics
Matches: 83, Mismatches: 22, Indels: 8
0.73 0.19 0.07
Matches are distributed among these distances:
33 20 0.24
34 59 0.71
35 4 0.05
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (33 bp):
TGGAATAAATACTTATCTTAGTTAATTAATTGT
Found at i:37089870 original size:34 final size:34
Alignment explanation
Indices: 37089826--37089947 Score: 135
Period size: 34 Copynumber: 3.6 Consensus size: 34
37089816 TTCAAGCATT
* *
37089826 TTAAGCTGCTGGAGTAAATGCTCATATTAGTTAA
1 TTAAGTTGCTGGAATAAATGCTCATATTAGTTAA
* * *
37089860 TTAAGTTGCTGGAATAAATGTTCATCTTGGTTAA
1 TTAAGTTGCTGGAATAAATGCTCATATTAGTTAA
*
37089894 TTGAGTTGCTGGAATAAATGCT--TATTCCA-TTAA
1 TTAAGTTGCTGGAATAAATGCTCATATT--AGTTAA
*
37089927 TTAA-TTGCTGGAATAAGTGCT
1 TTAAGTTGCTGGAATAAATGCT
37089948 TGTCTTAGTT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
32 19 0.25
33 7 0.09
34 49 0.65
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (34 bp):
TTAAGTTGCTGGAATAAATGCTCATATTAGTTAA
Found at i:37090104 original size:12 final size:11
Alignment explanation
Indices: 37090075--37090104 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
37090065 GTATAGTATG
37090075 TTTAATGTGTT
1 TTTAATGTGTT
37090086 TTTAATGTGTT
1 TTTAATGTGTT
37090097 TGTTAATG
1 T-TTAATG
37090105 CTTGTAGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (11 bp):
TTTAATGTGTT
Found at i:37095716 original size:30 final size:31
Alignment explanation
Indices: 37095645--37095722 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
37095635 TTTAACGGTT
*
37095645 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
37095676 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
37095707 ACT-GGCCGAAGTCTTT
1 ACTGGGCCGAAGCCTTT
37095723 ACTGTAAGCA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 12 0.27
31 33 0.73
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:37095976 original size:25 final size:25
Alignment explanation
Indices: 37095942--37096011 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
37095932 CTCTTTTAAT
*
37095942 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37095967 AACTGGGGCACAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
37095992 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37096012 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37097135 original size:27 final size:26
Alignment explanation
Indices: 37097023--37097155 Score: 158
Period size: 27 Copynumber: 5.0 Consensus size: 26
37097013 TAATTTAAAT
37097023 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** *
37097049 TTGAGGGTATTTTGGTAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
*
37097076 CTAGTGGTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
**
37097103 CTAGGGGTATTTTGGTAATTTTATCCTA
1 C-AGGGGTATTTTGGTAATTTTA-CAAA
* *
37097131 CAGGGGTATTTTAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
37097156 TCGAAGGTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 84 0.93
28 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:37097194 original size:27 final size:27
Alignment explanation
Indices: 37097154--37097245 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
37097144 GTAATTTCAC
*
37097154 AATCGAAGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
37097181 AA-CTGATGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
37097208 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
37097235 AATCGAGGGTA
1 AATCGAGGGTA
37097246 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:37097255 original size:27 final size:27
Alignment explanation
Indices: 37097018--37097259 Score: 120
Period size: 27 Copynumber: 9.0 Consensus size: 27
37097008 TTCTATAATT
37097018 TAAATC-AGGGGTATTTTGGTAATTTTA
1 TAAATCGA-GGGTATTTTGGTAATTTTA
* * *
37097045 CAAATTGAGGGTATTTTGGTAATTTCA
1 TAAATCGAGGGTATTTTGGTAATTTTA
* *
37097072 CAAA-CTAGTGGTATTTTGGTAATTTTA
1 TAAATCGAG-GGTATTTTGGTAATTTTA
* *
37097099 CAAA-CTAGGGGTATTTTGGTAATTTTA
1 TAAATCGA-GGGTATTTTGGTAATTTTA
** * *
37097126 T-CCTAC-AGGGGTATTTTAGTAATTTCA
1 TAAAT-CGA-GGGTATTTTGGTAATTTTA
* * **** *
37097153 -CAATCGAAGGTAAAACGGTAATTTTG
1 TAAATCGAGGGTATTTTGGTAATTTTA
* *** *
37097179 TAAA-CTGATGGTAAAATGGTAATTTTG
1 TAAATC-GAGGGTATTTTGGTAATTTTA
**** *
37097206 TAAATCGAGGGTAAAACGATAATTTTA
1 TAAATCGAGGGTATTTTGGTAATTTTA
*
37097233 TAAATCGAGGGTACTTTGGTAATTTTA
1 TAAATCGAGGGTATTTTGGTAATTTTA
37097260 CAAGTTGAGG
Statistics
Matches: 172, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
26 15 0.09
27 153 0.89
28 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
TAAATCGAGGGTATTTTGGTAATTTTA
Found at i:37103943 original size:11 final size:11
Alignment explanation
Indices: 37103927--37103965 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
37103917 ATTATTGAAA
37103927 AATGATTCGAC
1 AATGATTCGAC
*
37103938 AATGATTTGA-
1 AATGATTCGAC
37103948 AATGATTCGAC
1 AATGATTCGAC
*
37103959 TATGATT
1 AATGATT
37103966 TGGTATTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (11 bp):
AATGATTCGAC
Found at i:37103952 original size:21 final size:21
Alignment explanation
Indices: 37103926--37103967 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
37103916 CATTATTGAA
37103926 AAATGATTCGACAATGATTTG
1 AAATGATTCGACAATGATTTG
*
37103947 AAATGATTCGACTATGATTTG
1 AAATGATTCGACAATGATTTG
37103968 GTATTGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (21 bp):
AAATGATTCGACAATGATTTG
Found at i:37105223 original size:27 final size:26
Alignment explanation
Indices: 37105182--37105296 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
37105172 AGCATGGCTG
*
37105182 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
37105208 CCAGATACAGATATTGTGACAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
37105235 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
37105262 CCAGAAACAGACATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGACAGAGCCA
37105290 CCAGAAC
1 CCAGAAC
37105297 GCTTCCTCCA
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
26 12 0.15
27 44 0.54
28 26 0.32
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:37113017 original size:40 final size:40
Alignment explanation
Indices: 37112957--37113140 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
37112947 TATTCGAATG
*
37112957 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
37112997 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
37113037 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
37113077 ATATCTGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
37113117 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
37113141 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:37113090 original size:80 final size:80
Alignment explanation
Indices: 37112957--37113140 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
37112947 TATTCGAATG
* * *
37112957 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
37113021 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * * *
37113037 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
37113102 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
37113117 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
37113141 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:37132280 original size:49 final size:51
Alignment explanation
Indices: 37132146--37132288 Score: 227
Period size: 52 Copynumber: 2.8 Consensus size: 51
37132136 CCTTGTAGTT
* *
37132146 AAAGCTACCTTCTTCACAAAGTGGCCTTCACAGAGTACCACACTTGTGACC
1 AAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC
*
37132197 AAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGAACCACACTTGTGACC
1 AAAGCTATC-TTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC
*
37132249 -AAGCTATC-TCTTCTCAAAGTGGCCTTCACATAGTACCACA
1 AAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACA
37132289 TTTGAGTCAG
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
49 30 0.35
51 16 0.19
52 40 0.47
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (51 bp):
AAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC
Found at i:37139651 original size:26 final size:26
Alignment explanation
Indices: 37139622--37139673 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
37139612 ATATAATTTC
37139622 CAAATCATGTATC-TATATATCATGTA
1 CAAATCAT-TATCATATATATCATGTA
* *
37139648 CAAATCATTTTCATATATCTCATGTA
1 CAAATCATTATCATATATATCATGTA
37139674 AATAGCTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (26 bp):
CAAATCATTATCATATATATCATGTA
Found at i:37141432 original size:50 final size:49
Alignment explanation
Indices: 37141311--37141491 Score: 190
Period size: 50 Copynumber: 3.7 Consensus size: 49
37141301 CAGGGTAAGT
* * * **
37141311 TGCCGATGCCATGTCCCAGACATGGTCTTACA-ATGGGTATCATCAT-TGAG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACA-AGCTCTCA-CATATCCG
37141361 -GCCGATGCCATGTCCCAGACATGATCTTACACAAGCTCTCACATATCCG
1 TGCCGATGCCATGTCCCAGACATG-TCTTACACAAGCTCTCACATATCCG
* * * *
37141410 TGCCGACGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGCATATCCG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACAAGCTCTCACATATCCG
*
37141460 TG-CTAGTGCCATGTCCCAGACATGTCTTACAC
1 TGCCGA-TGCCATGTCCCAGACATGTCTTACAC
37141492 TGACACATCT
Statistics
Matches: 113, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
48 4 0.04
49 47 0.42
50 61 0.54
51 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACAAGCTCTCACATATCCG
Found at i:37141576 original size:46 final size:45
Alignment explanation
Indices: 37141509--37141634 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 45
37141499 TCTTGTAGTT
* *
37141509 GATGCC-TGTCCCAGACATGTCTTACACTGGCTTAAGTCTCGAGGCC
1 GATGCCATATCCCAGACATGTCTTACACTGGCTT--GTCTCAAGGCC
* * *
37141555 GATG-CATATCCTAGACATGTCTTACACTAGCACTTGTCTCAATGCC
1 GATGCCATATCCCAGACATGTCTTACACT-G-GCTTGTCTCAAGGCC
*
37141601 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATATCCCAGACAT-GTCTTACACTGGCT
37141635 CACACCAATG
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 39 0.58
47 14 0.21
48 13 0.19
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCCATATCCCAGACATGTCTTACACTGGCTTGTCTCAAGGCC
Found at i:37146340 original size:20 final size:19
Alignment explanation
Indices: 37146317--37146363 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
37146307 TATTTCTTAA
37146317 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
37146337 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
37146357 AATTAAA
1 AATTAAA
37146364 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:37148816 original size:42 final size:42
Alignment explanation
Indices: 37148748--37148857 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 42
37148738 TTTTCAGTGG
* * * * *
37148748 GCATGCTTAACATGCGATTCAGATTTATAATCTACGTAGTCA
1 GCATGCTTAACATGCAAATCATATTTATAATCAACATAGTCA
*
37148790 GCATGCTTACCATGCAAATCATATTTATAATCAACATAGTCA
1 GCATGCTTAACATGCAAATCATATTTATAATCAACATAGTCA
* *
37148832 ACATGCTTAACATGCAAATCCTATTT
1 GCATGCTTAACATGCAAATCATATTT
37148858 CAATATTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (42 bp):
GCATGCTTAACATGCAAATCATATTTATAATCAACATAGTCA
Found at i:37149145 original size:13 final size:13
Alignment explanation
Indices: 37149127--37149154 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37149117 ATCTAAATAA
37149127 ATATTTATATTTT
1 ATATTTATATTTT
37149140 ATATTTATATTTT
1 ATATTTATATTTT
37149153 AT
1 AT
37149155 TTGACGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATTTATATTTT
Found at i:37155740 original size:44 final size:43
Alignment explanation
Indices: 37155664--37155833 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 43
37155654 CATAGGATTC
* *
37155664 CGATTTGTGATTTCATGTAAGACCACGCCTGGGACATTGGCAT
1 CGATTTGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
* * *
37155707 CGATTTGTGATTTGCATGTAAGACAATTTCTGGGACATCGGCAT
1 CGATTTGTGATTT-CATGTAAGACCATGTCTGGGACATTGGCAT
* * * * * *
37155751 CG-TGTATGAGTTT-GTGTAAGACCCTGTCTGGGACAGTGACAT
1 CGATTTGTGA-TTTCATGTAAGACCATGTCTGGGACATTGGCAT
* * * *
37155793 CGATATGTGATTTCATGTAAGACCACGTCTGAGACGTTGGC
1 CGATTTGTGATTTCATGTAAGACCATGTCTGGGACATTGGC
37155834 GTTGTACAAG
Statistics
Matches: 100, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
42 27 0.27
43 43 0.43
44 30 0.30
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGATTTGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
Found at i:37157237 original size:13 final size:13
Alignment explanation
Indices: 37157219--37157245 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37157209 CATTCAACAC
37157219 ATAGGGGTATTTT
1 ATAGGGGTATTTT
37157232 ATAGGGGTATTTT
1 ATAGGGGTATTTT
37157245 A
1 A
37157246 GTCATTCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (13 bp):
ATAGGGGTATTTT
Found at i:37157665 original size:57 final size:58
Alignment explanation
Indices: 37157595--37157744 Score: 170
Period size: 57 Copynumber: 2.7 Consensus size: 58
37157585 TATCCATACT
* * * *
37157595 TATTCATTTGGCCCCTTTAGGCCC-AATCTCATTCATATGGCCCATTAGG-CCCAATC-
1 TATTCATATGGCCCCATTAGGCCCAAATCACATTCATATGACCCATT-GGCCCCAATCA
*
37157651 TCATTCATATGG-CCCATTAGGCCCAAATCACTTTCATATGACCCATTGGCCCCAATCA
1 T-ATTCATATGGCCCCATTAGGCCCAAATCACATTCATATGACCCATTGGCCCCAATCA
*
37157709 TATTCATATGG-CCCA-TCGGCCTC-AATCACATTCATA
1 TATTCATATGGCCCCATTAGGCC-CAAATCACATTCATA
37157745 GTCATGCAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
56 31 0.38
57 50 0.61
58 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (58 bp):
TATTCATATGGCCCCATTAGGCCCAAATCACATTCATATGACCCATTGGCCCCAATCA
Found at i:37157689 original size:29 final size:28
Alignment explanation
Indices: 37157596--37157744 Score: 176
Period size: 28 Copynumber: 5.2 Consensus size: 28
37157586 ATCCATACTT
* * *
37157596 ATTCATTTGGCCCCTTTAGGCCCAATCTC
1 ATTCATATGG-CCCATTAGGCCCAATCAC
*
37157625 ATTCATATGGCCCATTAGGCCCAATCTC
1 ATTCATATGGCCCATTAGGCCCAATCAC
37157653 ATTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCC-AATCAC
* * *
37157682 TTTCATATGACCCATT-GGCCCCAATCAT
1 ATTCATATGGCCCATTAGG-CCCAATCAC
*
37157710 ATTCATATGGCCCA-TCGGCCTCAATCAC
1 ATTCATATGGCCCATTAGGCC-CAATCAC
37157738 ATTCATA
1 ATTCATA
37157745 GTCATGCAAT
Statistics
Matches: 107, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.03
28 73 0.68
29 31 0.29
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.30
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:37159164 original size:37 final size:37
Alignment explanation
Indices: 37159114--37159192 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37159104 TTATTACGAA
* * *
37159114 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37159151 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37159188 GTCTT
1 GTCTT
37159193 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37159470 original size:47 final size:47
Alignment explanation
Indices: 37159310--37159722 Score: 709
Period size: 47 Copynumber: 8.7 Consensus size: 47
37159300 GCCCTTCGGG
*
37159310 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
37159360 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
37159409 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
37159456 ACTTTCACATTCATCACATCGGCCATTAGGCCGTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
37159503 ACTTTCACATTCATCACATCGGCCATTTGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
37159550 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
37159597 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
37159644 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
37159691 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
37159723 ATACTATCAT
Statistics
Matches: 355, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 267 0.75
49 84 0.24
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:37159543 original size:22 final size:23
Alignment explanation
Indices: 37159510--37159684 Score: 70
Period size: 22 Copynumber: 7.5 Consensus size: 23
37159500 TACACTTTCA
37159510 CATTCATCACATCGGCCATTTGG
1 CATTCATCACATCGGCCATTTGG
**** **
37159533 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTTGG
*
37159557 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTTGG
**** **
37159580 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTTGG
*
37159604 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTTGG
* **** **
37159627 CCTT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTTGG
*
37159651 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTTGG
37159674 CATT-ATCACAT
1 CATTCATCACAT
37159685 ATATACACTT
Statistics
Matches: 100, Mismatches: 43, Indels: 19
0.62 0.27 0.12
Matches are distributed among these distances:
22 28 0.28
23 27 0.27
24 24 0.24
25 21 0.21
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTTGG
Found at i:37172068 original size:17 final size:15
Alignment explanation
Indices: 37172022--37172070 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
37172012 AAACACTTTC
* *
37172022 TTCTTTTCCACTCTT
1 TTCTTTTTCACTCAT
37172037 TTCTTTTTCACTCAT
1 TTCTTTTTCACTCAT
37172052 TTCTTTTTCTAACTCAT
1 TTCTTTTTC--ACTCAT
37172069 TT
1 TT
37172071 TCAAATCCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 22 0.73
17 8 0.27
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (15 bp):
TTCTTTTTCACTCAT
Found at i:37172221 original size:18 final size:18
Alignment explanation
Indices: 37172176--37172224 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
37172166 TTGCTCACCA
37172176 TCTTTTCTTTCTTCAATC
1 TCTTTTCTTTCTTCAATC
* *
37172194 TCTCTCTCTTT-TTCAATTT
1 TCT-TTTCTTTCTTCAA-TC
37172213 TCTTTTCTTTCT
1 TCTTTTCTTTCT
37172225 CACATGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (18 bp):
TCTTTTCTTTCTTCAATC
Found at i:37177010 original size:27 final size:27
Alignment explanation
Indices: 37176969--37177022 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37176959 TGTCATGTGA
* *
37176969 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
37176996 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
37177023 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:37177342 original size:49 final size:50
Alignment explanation
Indices: 37177268--37177515 Score: 259
Period size: 49 Copynumber: 5.0 Consensus size: 50
37177258 ATCTATTGTG
* * * *
37177268 AGGTCACGTGTGTAGTACTAAGTGCATGCTATTACGTGTACCGGATAACT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACT
* * * *
37177318 -GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAC-T
* * * * * ***
37177368 CGATCACGA-GTGTAGTACTAAGTGCAGACGACTACGTGTATCAGATGGTT
1 AGGTCAC-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACT
* *
37177418 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACT
* * * *
37177467 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAAC
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAC
37177516 CTTGTCTACA
Statistics
Matches: 160, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 84 0.52
50 40 0.25
51 35 0.22
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACT
Found at i:37180429 original size:20 final size:20
Alignment explanation
Indices: 37180406--37180444 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
37180396 TAAACATGGT
*
37180406 ATGTATGATATGCACATGAC
1 ATGTATAATATGCACATGAC
37180426 ATGTATAATATGCACATGA
1 ATGTATAATATGCACATGA
37180445 TGTATTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGTATAATATGCACATGAC
Found at i:37180612 original size:72 final size:73
Alignment explanation
Indices: 37180494--37180638 Score: 213
Period size: 72 Copynumber: 2.0 Consensus size: 73
37180484 GGAGGAAGTG
* * *
37180494 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATCGAAA-AGGCTTATGCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTATCGAAAGAGGC-TAGGCC
37180558 -CCAGTTAT
65 TCCAGTTAT
* * *
37180566 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGATTTTGCCCCAGTTATTGAAAGAGGCTAGGCCT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTATCGAAAGAGGCTAGGCCT
37180631 CCAGTTAT
66 CCAGTTAT
37180639 ATGATAAAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
72 53 0.82
73 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (73 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAGTTATCGAAAGAGGCTAGGCCT
CCAGTTAT
Found at i:37180619 original size:24 final size:24
Alignment explanation
Indices: 37180494--37180613 Score: 188
Period size: 24 Copynumber: 5.0 Consensus size: 24
37180484 GGAGGAAGTG
37180494 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37180518 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37180542 CGAAAA-GGCTTATGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
37180566 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
37180590 TAAAAGGGATTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37180614 TGAAAGAGGC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 4 0.04
24 81 0.91
25 4 0.04
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:37184169 original size:30 final size:30
Alignment explanation
Indices: 37184135--37184299 Score: 93
Period size: 30 Copynumber: 5.5 Consensus size: 30
37184125 AGTCGAGGCT
*
37184135 ATCCCTTTTCATAATTTTATGGTCATCACC
1 ATCCCTTTTCATAATTTAATGGTCATCACC
** * *
37184165 ATCCCTTTTCATTGTTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTAATGGTCATCACC
** * * * *
37184195 ATTGCTTTTCATAATTTGATAGTCGAT-GCT
1 ATCCCTTTTCATAATTTAATGGTC-ATCACC
* * * * * *
37184225 ATCCCGTTTCGTAAATCAATAGCCGA--AGCC
1 ATCCCTTTTCATAATTTAATGGTC-ATCA-CC
* ** *
37184255 AACCCTTTTCATTGTTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTAATGGTCATCACC
37184285 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
37184300 CGATAGCCGA
Statistics
Matches: 93, Mismatches: 38, Indels: 8
0.67 0.27 0.06
Matches are distributed among these distances:
29 1 0.01
30 90 0.97
31 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTAATGGTCATCACC
Found at i:37184219 original size:90 final size:90
Alignment explanation
Indices: 37184110--37184326 Score: 224
Period size: 90 Copynumber: 2.4 Consensus size: 90
37184100 AAGTTATCTT
* * * * ** * * *
37184110 TTTTCATAGTTCGACAGTCGAGGCTATCCCTTTTCATAATTTTATGGTC-ATCA-CCATCCCTTT
1 TTTTCATAATTCGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCGA--AGCCAACCCTTT
* **
37184173 TCATTGTTCAATGGTCGTCACCATTGC
64 TCATTGTTCAATGGTCATCACCATCCC
* * * *
37184200 TTTTCATAATTTGATAGTCGATGCTATCCCGTTTCGTAAATCAATAGCCGAAGCCAACCCTTTTC
1 TTTTCATAATTCGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCGAAGCCAACCCTTTTC
**
37184265 ATTGTTTGATGGTCATCACCATCCC
66 ATTGTTCAATGGTCATCACCATCCC
*
37184290 TTTTCATAA-TCGATAGCCGAAGCTATCCCTTTTCATA
1 TTTTCATAATTCGATAGTCGAAGCTATCCCTTTTCATA
37184327 TTCATTAGCC
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
89 24 0.23
90 78 0.76
91 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (90 bp):
TTTTCATAATTCGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCGAAGCCAACCCTTTTC
ATTGTTCAATGGTCATCACCATCCC
Found at i:37184263 original size:60 final size:59
Alignment explanation
Indices: 37184137--37184326 Score: 141
Period size: 60 Copynumber: 3.2 Consensus size: 59
37184127 TCGAGGCTAT
* * * ** * * * *
37184137 CCCTTTTCATAATTTTATGGTCATCACCATCCCTTTTCATTGTTCAATGGTCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGTCATCACCATCCCGTTTCA-TAATCAATAGCCG-AAGCCAA
** * * *
37184197 TGCTTTTCATAATTTGATAGTCGAT-GCTATCCCGTTTCGTAAATCAATAGCCGAAGCCAA
1 CCCTTTTCATAATTTGATAGTC-ATCACCATCCCGTTTCAT-AATCAATAGCCGAAGCCAA
** * * * * *
37184257 CCCTTTTCATTGTTTGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTAT
1 CCCTTTTCATAATTTGATAGTCATCACCATCCCGTTTCATAATCAATAGCCGAAGCCAA
37184316 CCCTTTTCATA
1 CCCTTTTCATA
37184327 TTCATTAGCC
Statistics
Matches: 99, Mismatches: 27, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
59 30 0.30
60 67 0.68
61 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (59 bp):
CCCTTTTCATAATTTGATAGTCATCACCATCCCGTTTCATAATCAATAGCCGAAGCCAA
Found at i:37184323 original size:29 final size:30
Alignment explanation
Indices: 37184285--37184355 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
37184275 GGTCATCACC
37184285 ATCCCTTTTCATAATCGA-TAGCC-GAAGCT
1 ATCCCTTTTCATAATC-ATTAGCCTGAAGCT
*
37184314 ATCCCTTTTCATATTCATTAGCCTGAAGCT
1 ATCCCTTTTCATAATCATTAGCCTGAAGCT
*
37184344 ATCCATTTTCAT
1 ATCCCTTTTCAT
37184356 TTTTCGATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 1 0.03
29 20 0.53
30 17 0.45
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATCATTAGCCTGAAGCT
Found at i:37192174 original size:21 final size:21
Alignment explanation
Indices: 37192133--37192174 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37192123 GAAATAATAA
*
37192133 GATGTACAGTGATTTGAAACG
1 GATGTACAGTGATTGGAAACG
* *
37192154 GATGTACGGTGATTGGGAACG
1 GATGTACAGTGATTGGAAACG
37192175 AAACGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.10, G:0.36, T:0.26
Consensus pattern (21 bp):
GATGTACAGTGATTGGAAACG
Found at i:37193426 original size:47 final size:47
Alignment explanation
Indices: 37193375--37193470 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
37193365 TTAGGGGAGA
* * *
37193375 GAGTTGTAACAGCCCATTTTTAGTGAAAATCAAAATAGTGGTTTCGG
1 GAGTTGTAACAACCCATTTTTAGTGAAAATAAAAACAGTGGTTTCGG
*
37193422 GAGTTGTAACAACCCATTTTTAGTGAAAATAAAAACAGTGGTTTTGG
1 GAGTTGTAACAACCCATTTTTAGTGAAAATAAAAACAGTGGTTTCGG
37193469 GA
1 GA
37193471 CCACAAAGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (47 bp):
GAGTTGTAACAACCCATTTTTAGTGAAAATAAAAACAGTGGTTTCGG
Found at i:37212596 original size:23 final size:24
Alignment explanation
Indices: 37212570--37212614 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37212560 CAGTACAATT
37212570 TTATA-TAATGAAATTCACAAGAC
1 TTATACTAATGAAATTCACAAGAC
* *
37212593 TTATACTAATTAAGTTCACAAG
1 TTATACTAATGAAATTCACAAG
37212615 CGTTAAACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (24 bp):
TTATACTAATGAAATTCACAAGAC
Found at i:37213782 original size:41 final size:41
Alignment explanation
Indices: 37213710--37213976 Score: 286
Period size: 41 Copynumber: 6.5 Consensus size: 41
37213700 CGTTTGCAAT
* * * *
37213710 AAACGCCGCAAAAAATTGAGCAATAGAGGCATTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
* * * * *
37213751 AAACCCCGCTAAAAACTGAGTAATAGCGGCATGTCTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
* * * * *
37213792 AAACACCACTAAAAACTGAGCAATAGCGGCCTTTTAGGTAC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
** *
37213833 AAACGCCATTAAAAACTGAGCAATAGCAGCGTTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
** *
37213874 AAACGCCATTAAAAAC-GAAGCAATAGCGGTGTTTTTGGTCC
1 AAACGCCGCTAAAAACTG-AGCAATAGCGGCGTTTTTGGTCC
* * *
37213915 AAACACAGCTAAAAACTGAGCAATAGTGGCGTTTTT-GTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
* *
37213955 AAACGCCGCAAAAAATTGAGCA
1 AAACGCCGCTAAAAACTGAGCA
37213977 GCCATTTTCG
Statistics
Matches: 191, Mismatches: 33, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
40 23 0.12
41 167 0.87
42 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (41 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
Found at i:37215330 original size:49 final size:49
Alignment explanation
Indices: 37215274--37215371 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
37215264 TGTATCGAGG
37215274 TAAGTTCATGTGTAAATAAGGTAACATAATTTTTATTTTAAGTGATTTA
1 TAAGTTCATGTGTAAATAAGGTAACATAATTTTTATTTTAAGTGATTTA
37215323 TAAGTTCATGTGTAAATAAGGTAACATAATTTTTATTTTAAGTGATTTA
1 TAAGTTCATGTGTAAATAAGGTAACATAATTTTTATTTTAAGTGATTTA
37215372 ATGTTATTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (49 bp):
TAAGTTCATGTGTAAATAAGGTAACATAATTTTTATTTTAAGTGATTTA
Found at i:37224785 original size:39 final size:39
Alignment explanation
Indices: 37224740--37224860 Score: 199
Period size: 39 Copynumber: 3.1 Consensus size: 39
37224730 AAGCAAGACA
* *
37224740 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
37224779 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
*
37224818 CTGGAAATGTATCCGGGCTAAAGTCCCTCAGGCCTT-GTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGG-CTTCGTG
37224857 CTGG
1 CTGG
37224861 TAACATAATT
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 75 0.96
40 3 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
Found at i:37228001 original size:14 final size:14
Alignment explanation
Indices: 37227982--37228036 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
37227972 TCTAAACCCC
37227982 TAAACCCTAAACCT
1 TAAACCCTAAACCT
*
37227996 TAAACCATAAACCT
1 TAAACCCTAAACCT
** * *
37228010 TAAATTCTAAAAACA
1 TAAACCCT-AAACCT
37228025 TAAACCCTAAAC
1 TAAACCCTAAAC
37228037 ACTAATCCAT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 21 0.68
15 10 0.32
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:37228041 original size:22 final size:21
Alignment explanation
Indices: 37227982--37228041 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
37227972 TCTAAACCCC
* *
37227982 TAAACCCTAAACCTTAAACCA
1 TAAACCCTAAACCTAAAAACA
* *
37228003 TAAACCTTAAATTCTAAAAACA
1 TAAACCCTAAA-CCTAAAAACA
37228025 TAAACCCTAAACACTAA
1 TAAACCCTAAAC-CTAA
37228042 TCCATAAACA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 10 0.32
22 21 0.68
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACCCTAAACCTAAAAACA
Found at i:37228218 original size:35 final size:34
Alignment explanation
Indices: 37228175--37228274 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 34
37228165 TAAATTTATT
37228175 TTTA-GGTTTAGGGTTTAATATTTAAGGTTTTAAG
1 TTTATGGTTTAGGGTTTAATATTT-AGGTTTTAAG
* **
37228209 TTTATGGTTTAGGGTTTTATGGTTA-GTATGTTAAG
1 TTTATGGTTTAGGGTTTAATATTTAGGT-T-TTAAG
**
37228244 TTTATGGTTTAGGGTTTGTTATTTTAGGTTT
1 TTTATGGTTTAGGGTTTAATA-TTTAGGTTT
37228275 AGGGTTTAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
33 2 0.04
34 6 0.11
35 40 0.74
36 4 0.07
37 2 0.04
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (34 bp):
TTTATGGTTTAGGGTTTAATATTTAGGTTTTAAG
Found at i:37228282 original size:28 final size:27
Alignment explanation
Indices: 37228209--37228288 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 27
37228199 AGGTTTTAAG
* *
37228209 TTTATGGTTTAGGGTTTTATGGTTAGTAT
1 TTTA-GGTTTAGGG-TTTAGGGTTTGTAT
* * *
37228238 GTTAAGTTTATGGTTTAGGGTTTGTTAT
1 TTTAGGTTTAGGGTTTAGGGTTTG-TAT
*
37228266 TTTAGGTTTAGGGTTTAGTGTTT
1 TTTAGGTTTAGGGTTTAGGGTTT
37228289 TAAAGTTTGT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
27 9 0.22
28 29 0.71
29 3 0.07
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55
Consensus pattern (27 bp):
TTTAGGTTTAGGGTTTAGGGTTTGTAT
Found at i:37228288 original size:14 final size:14
Alignment explanation
Indices: 37228266--37228326 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
37228256 GGTTTGTTAT
37228266 TTTAG-GTTTAGGG
1 TTTAGTGTTTAGGG
**
37228279 TTTAGTGTTTTAAAG
1 TTTAGTG-TTTAGGG
37228294 TTT-GTTGTTTAGGG
1 TTTAG-TGTTTAGGG
*
37228308 TTTAGTGTTTAGGA
1 TTTAGTGTTTAGGG
37228322 TTTAG
1 TTTAG
37228327 AGTCTTGTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 5 0.13
14 23 0.59
15 11 0.28
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.52
Consensus pattern (14 bp):
TTTAGTGTTTAGGG
Found at i:37228355 original size:35 final size:33
Alignment explanation
Indices: 37228257--37228355 Score: 83
Period size: 35 Copynumber: 2.8 Consensus size: 33
37228247 ATGGTTTAGG
* *
37228257 GTTTGTTATTTTAGGTTTAGGGTTTAGTGTTTTAAA
1 GTTTGTT-GTTTAGGTTTAGGG-TTAG-GATTTAAA
* *
37228293 GTTTGTTGTTTAGGGTTTAGTGTTTAGGATTTAGA
1 GTTTGTTGTTTA-GGTTTAG-GGTTAGGATTTAAA
37228328 GTCTTG-TGTTTATGGTTTAAGGGTTAGG
1 GT-TTGTTGTTTA-GGTTT-AGGGTTAGG
37228356 GTATTAGGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
35 29 0.55
36 23 0.43
37 1 0.02
ACGTcount: A:0.17, C:0.01, G:0.30, T:0.52
Consensus pattern (33 bp):
GTTTGTTGTTTAGGTTTAGGGTTAGGATTTAAA
Found at i:37228372 original size:8 final size:7
Alignment explanation
Indices: 37228300--37228378 Score: 56
Period size: 7 Copynumber: 11.1 Consensus size: 7
37228290 AAAGTTTGTT
37228300 GTTTAGG
1 GTTTAGG
*
37228307 GTTTAGT
1 GTTTAGG
37228314 GTTTAGG
1 GTTTAGG
* *
37228321 ATTTAGA
1 GTTTAGG
*
37228328 GTCTT-GT
1 GT-TTAGG
*
37228335 GTTTATG
1 GTTTAGG
37228342 GTTTAAGG
1 GTTT-AGG
37228350 G-TTAGG
1 GTTTAGG
37228356 GTATTAGG
1 GT-TTAGG
37228364 GTTTAAGG
1 GTTT-AGG
37228372 G-TTAGG
1 GTTTAGG
37228378 G
1 G
37228379 ATTTTGATAA
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
6 10 0.18
7 31 0.54
8 16 0.28
ACGTcount: A:0.19, C:0.01, G:0.37, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:37228486 original size:7 final size:7
Alignment explanation
Indices: 37228474--37228511 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
37228464 AATATATATA
37228474 TTTAGGG
1 TTTAGGG
37228481 TTTAGGG
1 TTTAGGG
37228488 TTTAGGG
1 TTTAGGG
*
37228495 TTTCAAGG
1 TTT-AGGG
37228503 TTTAGGG
1 TTTAGGG
37228510 TT
1 TT
37228512 GATGGTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:37228506 original size:15 final size:14
Alignment explanation
Indices: 37228474--37228511 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
37228464 AATATATATA
*
37228474 TTTAGGGTTTAGGG
1 TTTAGGGTTTAAGG
37228488 TTTAGGGTTTCAAGG
1 TTTAGGGTTT-AAGG
37228503 TTTAGGGTT
1 TTTAGGGTT
37228512 GATGGTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.45
Consensus pattern (14 bp):
TTTAGGGTTTAAGG
Found at i:37232723 original size:27 final size:27
Alignment explanation
Indices: 37232675--37232754 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
37232665 GCAAGGCTAC
* *
37232675 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGATA
* *
37232702 CAGATATTGTGGCTAGGCCACCAGA-A
1 CAGATATTGTGGCGAAGCCACCAGATA
*
37232728 CAAATATATGTGGCGAAGCCACCAGAT
1 CAGATAT-TGTGGCGAAGCCACCAGAT
37232755 TGCAGCGAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.16
27 37 0.84
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCGAAGCCACCAGATA
Found at i:37233476 original size:27 final size:27
Alignment explanation
Indices: 37233446--37233618 Score: 222
Period size: 27 Copynumber: 6.4 Consensus size: 27
37233436 GGGGCAAAAT
* * *
37233446 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37233473 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37233500 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37233527 GGTAATTATATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37233554 GGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
37233581 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37233608 GGTAATTCTAC
1 GGTAATTCTAC
37233619 AACTTATCCA
Statistics
Matches: 126, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 121 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37233586 original size:81 final size:81
Alignment explanation
Indices: 37233446--37233614 Score: 257
Period size: 81 Copynumber: 2.1 Consensus size: 81
37233436 GGGGCAAAAT
* * * *
37233446 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTATACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTAC
37233511 CTTACAAGGGTATTTC
66 CTTACAAGGGTATTTC
* * * * *
37233527 GGTAATTATATCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCGGTAATTCTAC
1 GGTAATTATACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTAC
37233592 CTTACAAGGGTATTTC
66 CTTACAAGGGTATTTC
37233608 GGTAATT
1 GGTAATT
37233615 CTACAACTTA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTAATTATACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTAC
CTTACAAGGGTATTTC
Found at i:37240354 original size:27 final size:26
Alignment explanation
Indices: 37240306--37240357 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37240296 GCGAGGCTGC
*
37240306 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
37240332 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37240358 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37240370 original size:67 final size:68
Alignment explanation
Indices: 37240219--37240376 Score: 237
Period size: 67 Copynumber: 2.3 Consensus size: 68
37240209 CACCACAGAA
* * *
37240219 ATTGCAACGACGCTACCAGATATTGTGACGAAGTCACCAAAACAGATATATATATGTGGCGAAGC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAAAACAG--A-ATATATGTGGCGAAGC
37240284 CACCAG
63 CACCAG
* *
37240290 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAG-ATATATGTGGCGAGGCCAC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAAAACAGAATATATGTGGCGAAGCCAC
37240354 CAG
66 CAG
37240357 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
37240377 ACGCTTCCTC
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
67 41 0.50
71 41 0.50
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (68 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAAAACAGAATATATGTGGCGAAGCCAC
CAG
Found at i:37240985 original size:26 final size:27
Alignment explanation
Indices: 37240956--37241017 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
37240946 TCACACAAGT
*
37240956 TAGTCATTT-ACGCACAAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
* *
37240982 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
*
37241009 TAGTAATTT
1 TAGTCATTT
37241018 TACCCCACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
TAGTCATTTAACACACAAGGGGCAAAA
Found at i:37241043 original size:27 final size:27
Alignment explanation
Indices: 37241012--37241260 Score: 162
Period size: 27 Copynumber: 9.2 Consensus size: 27
37241002 GGCAAAATAG
*
37241012 TAATTTTACCCCACAAGGGTATCTCAGA
1 TAATTTTACCCTACAAGGGTATCTC-GA
* *
37241040 -AATTCTT-CCCTACAGGGGTATTTCGA
1 TAATT-TTACCCTACAAGGGTATCTCGA
* * * *
37241066 TAATTCTACCTTACAAGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCGA
* * * *
37241093 TAATTCTATCCTAC-AGCGGTATTTCGG
1 TAATTTTACCCTACAAG-GGTATCTCGA
* * *
37241120 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCGA
* * * * *
37241147 TAATTCTATCCTACATGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCGA
* * * *
37241174 TAATTCTACCCTACACGGGTATTTCAA
1 TAATTTTACCCTACAAGGGTATCTCGA
* * * * *
37241201 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCGA
* * * *
37241228 TAATTCTACCTTACAGGGGTATTTCGA
1 TAATTTTACCCTACAAGGGTATCTCGA
37241255 TAATTT
1 TAATTT
37241261 ACAACTTATC
Statistics
Matches: 192, Mismatches: 24, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
26 5 0.03
27 183 0.95
28 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATCTCGA
Found at i:37241134 original size:81 final size:81
Alignment explanation
Indices: 37241011--37241259 Score: 324
Period size: 81 Copynumber: 3.1 Consensus size: 81
37241001 GGGCAAAATA
* * * * * *
37241011 GTAATTTTACCCCACAAGGGTATCTCAGA-AATTCTTCCCTACAGGGGTATTTCGATAATTCTAC
1 GTAATTCTACCCTACACGGGTATTTCA-ATAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
37241075 CTTACAAGGGTATTTCG
65 CTTACAAGGGTATTTCG
* ** *
37241092 GTAATTCTATCCTACA-GCGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAT
1 GTAATTCTACCCTACACG-GGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-
*
37241156 CC-TACATGGGTATTTCG
64 CCTTACAAGGGTATTTCG
*
37241173 GTAATTCTACCCTACACGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACACGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
*
37241238 TTACAGGGGTATTTCG
66 TTACAAGGGTATTTCG
*
37241254 ATAATT
1 GTAATT
37241260 TACAACTTAT
Statistics
Matches: 146, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
80 3 0.02
81 140 0.96
82 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCTACACGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
TTACAAGGGTATTTCG
Found at i:37241258 original size:54 final size:54
Alignment explanation
Indices: 37241011--37241259 Score: 329
Period size: 54 Copynumber: 4.6 Consensus size: 54
37241001 GGGCAAAATA
* * * *
37241011 GTAATTTTACCCCACAAGGGTATCTCAGA-AATTCTTCCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCG
* * * * *
37241065 ATAATTCTACCTTACAAGGGTATTTCGGTAATTCTATCCTACAGCGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
* * *
37241119 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACATGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
* * *
37241173 GTAATTCTACCCTACACGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
* *
37241227 GTAATTCTACCTTACAGGGGTATTTCGATAATT
1 GTAATTCTACCCTACAAGGGTATTTCGATAATT
37241260 TACAACTTAT
Statistics
Matches: 172, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.01
54 171 0.99
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
Found at i:37243171 original size:40 final size:40
Alignment explanation
Indices: 37243094--37243334 Score: 290
Period size: 40 Copynumber: 6.0 Consensus size: 40
37243084 GGATTTAACT
* * *
37243094 GGATATAGCT-ACTCGCTC-AATGCCTTCGAGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* **
37243133 GGATATAGTAACTCGCACCAATGCCTTCTTGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
37243173 GGATATAGTAGCTCACACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
37243213 GGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * * *
37243253 AGATGTAATAACTCGCACAAATGCCTTCGGAACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
37243293 GGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
37243333 GG
1 GG
37243335 TTATCATCCA
Statistics
Matches: 177, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 15 0.08
40 161 0.91
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:37244652 original size:53 final size:52
Alignment explanation
Indices: 37244577--37244701 Score: 196
Period size: 53 Copynumber: 2.4 Consensus size: 52
37244567 CTCAAATCTC
* *
37244577 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGC-CTT
*
37244630 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGTCAAGAACAACATGAGAGCCTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCCTT
*
37244682 TTTTTTCTTTCTTTTCCTTT
1 TTTTTTC-TTCTTTTTCTTT
37244702 TTTTCATCAT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
52 9 0.13
53 58 0.87
ACGTcount: A:0.16, C:0.22, G:0.10, T:0.53
Consensus pattern (52 bp):
TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCCTT
Found at i:37251314 original size:40 final size:40
Alignment explanation
Indices: 37251237--37251514 Score: 350
Period size: 40 Copynumber: 7.0 Consensus size: 40
37251227 GGATTTAACT
* * *
37251237 GGATATAGCT-ACTCGCTC-AATGCCTTCGAGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
37251276 GGATATAGTAACTCGCACCAATGCCTTCTGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
37251316 GGATATAGTAGCTCACACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
37251356 GGATGTAATAACTCGTACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
37251396 GGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
37251436 GGATGTAATAACTCGCACAAAT-CCTTC-GGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
37251474 GGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
37251514 G
1 G
37251515 ATTATCATCC
Statistics
Matches: 215, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 28 0.13
39 25 0.12
40 162 0.75
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:37252824 original size:53 final size:53
Alignment explanation
Indices: 37252761--37252886 Score: 198
Period size: 53 Copynumber: 2.4 Consensus size: 53
37252751 CTCAAAGCTC
* *
37252761 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCCTTT
* *
37252814 TTTTTTCTTCTTTATCTTTCTTCTATTCGGTCAAGAACAACATGAGAGCCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCCTTT
*
37252867 TTTTTTCTTTCTTTTCCTTT
1 TTTTTTC-TTCTTTTTCTTT
37252887 TTTTCATCAT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
53 56 0.85
54 10 0.15
ACGTcount: A:0.17, C:0.21, G:0.10, T:0.52
Consensus pattern (53 bp):
TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCCTTT
Found at i:37254300 original size:27 final size:27
Alignment explanation
Indices: 37254257--37254484 Score: 312
Period size: 27 Copynumber: 8.4 Consensus size: 27
37254247 GAATCGTTAC
37254257 GTGATAAAATGACGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* *
37254284 GCGATAAAATGATGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* *
37254311 GTGATAAAATGACGATTTTGCTCTCAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* * * *
37254338 GTGATAAAATGAAGATTTTTCTCTCAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* * * *
37254365 GTGATAAAATGACAATTTTTCGCATAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* *
37254392 GTCATAAAATGACGATTTCGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
37254419 GTGATAAAATGACGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* *
37254446 ATGATAAAATGACTATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
37254473 GTGATAAAATGA
1 GTGATAAAATGA
37254485 TCGAAATACC
Statistics
Matches: 177, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 177 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (27 bp):
GTGATAAAATGACGATTTTGCCCTTAT
Found at i:37254496 original size:27 final size:27
Alignment explanation
Indices: 37254257--37254521 Score: 124
Period size: 27 Copynumber: 9.9 Consensus size: 27
37254247 GAATCGTTAC
** *
37254257 GTGATAAAATGACGATTTTGCCCTTAT
1 GTGATAAAATGACGATAATACCCTTAT
* * ** *
37254284 GCGATAAAATGATGATTTTGCCCTTAT
1 GTGATAAAATGACGATAATACCCTTAT
** * * *
37254311 GTGATAAAATGACGATTTTGCTCTCAT
1 GTGATAAAATGACGATAATACCCTTAT
* ** * * *
37254338 GTGATAAAATGAAGATTTTTCTCTCAT
1 GTGATAAAATGACGATAATACCCTTAT
* ** * * *
37254365 GTGATAAAATGACAATTTTTCGCATAT
1 GTGATAAAATGACGATAATACCCTTAT
* * *
37254392 GTCATAAAATGACGAT-TTCGCCCTTAT
1 GTGATAAAATGACGATAAT-ACCCTTAT
** *
37254419 GTGATAAAATGACGATTTTGCCCTTAT
1 GTGATAAAATGACGATAATACCCTTAT
* * ** *
37254446 ATGATAAAATGACTATTTTGCCCTTAT
1 GTGATAAAATGACGATAATACCCTTAT
*
37254473 GTGATAAAATGATCGA-AATACCCTCAT
1 GTGATAAAATGA-CGATAATACCCTTAT
* *
37254500 AG-G-TAAAATGACCAAAATACCC
1 -GTGATAAAATGACGATAATACCC
37254522 CTACAGGGTA
Statistics
Matches: 205, Mismatches: 28, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.01
26 17 0.08
27 181 0.88
28 5 0.02
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
GTGATAAAATGACGATAATACCCTTAT
Found at i:37254517 original size:26 final size:26
Alignment explanation
Indices: 37254477--37254574 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
37254467 CCTTATGTGA
*
37254477 TAAAATGATCGAAATACCCTCATAGG
1 TAAAATGACCGAAATACCCTCATAGG
* *
37254503 TAAAATGACCAAAATACCCCTACA-GGG
1 TAAAATGACCGAAATA-CCCT-CATAGG
* *
37254530 TAGAATGACCGAAATACCACT-GTAGAG
1 TAAAATGACCGAAATACC-CTCATAG-G
* *
37254557 TAAAATGACTGTAATACC
1 TAAAATGACCGAAATACC
37254575 TCGGTAAGGT
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
26 17 0.30
27 38 0.67
28 2 0.04
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.20
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCTCATAGG
Found at i:37254991 original size:18 final size:18
Alignment explanation
Indices: 37254935--37254993 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
37254925 TCTGCTTGCA
*
37254935 TACTGCACTGATTACTGT
1 TACTGCACTGATAACTGT
* * * *
37254953 TTCTGCATTGATCATTGT
1 TACTGCACTGATAACTGT
*
37254971 TACTGCACTGATAACTAT
1 TACTGCACTGATAACTGT
37254989 TACTG
1 TACTG
37254994 AAATGGGCTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (18 bp):
TACTGCACTGATAACTGT
Done.