Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 136 of 373
Found at i:44870515 original size:3 final size:3
Alignment explanation
Indices: 44870507--44870641 Score: 73
Period size: 3 Copynumber: 45.7 Consensus size: 3
44870497 AATTTCACTT
* * * * *
44870507 TTA TTA TTA TGA CTA -TA TTA TCA TTG TTA TTA TTA TT- TTCCA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA
* * * * **
44870552 TTA TTA ATA TTA ATA TTAA TT- TTC TTA TTA TTA CTA TTA TTA GAA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
44870597 TCA TAA GTA TTA -TA TTA TTA TTA TTA -TA TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
44870642 GTCTTTTATA
Statistics
Matches: 98, Mismatches: 26, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
2 10 0.10
3 84 0.86
4 3 0.03
5 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:44877519 original size:64 final size:64
Alignment explanation
Indices: 44877442--44877565 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
44877432 GCATTCATAA
*
44877442 CACATCTAATTAGGAGCATTTGATTCGTTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
44877506 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAA
1 CACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAA
44877566 ACATAGATAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:44877739 original size:44 final size:44
Alignment explanation
Indices: 44877685--44877837 Score: 133
Period size: 44 Copynumber: 3.5 Consensus size: 44
44877675 ATTTACAGAT
44877685 CTTAACCCCCTAAGCAGTAGGGAATCAAATCAAAGGCGATAAGG
1 CTTAACCCCCTAAGCAGTAGGGAATCAAATCAAAGGCGATAAGG
* *
44877729 CTTAACCCCCTAAGCAATAGGG--T--AA-C--AGGCTGAATTTACAGCT
1 CTTAACCCCCTAAGCAGTAGGGAATCAAATCAAAGGC-G-A--TA-AG-G
* * *
44877772 CTTAACCCACTAAGCAGTAGGGAATCAGATCAAAGGCGAT-GGG
1 CTTAACCCCCTAAGCAGTAGGGAATCAAATCAAAGGCGATAAGG
*
44877815 CCTTAAACCCCTAAGCAGTAGGG
1 -CTTAACCCCCTAAGCAGTAGGG
44877838 TAACATGTAA
Statistics
Matches: 86, Mismatches: 9, Indels: 28
0.70 0.07 0.23
Matches are distributed among these distances:
37 4 0.05
38 1 0.01
39 2 0.02
40 2 0.02
41 2 0.02
42 3 0.03
43 20 0.23
44 42 0.49
45 1 0.01
46 1 0.01
47 1 0.01
48 2 0.02
49 1 0.01
50 4 0.05
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGAATCAAATCAAAGGCGATAAGG
Found at i:44877793 original size:43 final size:42
Alignment explanation
Indices: 44877642--44877793 Score: 125
Period size: 43 Copynumber: 3.5 Consensus size: 42
44877632 AGCCACAGGC
* * **
44877642 CTTAAACCCCTAAGCAGCAAAGTAACAGGCTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAG-T
*
44877685 CTTAACCCCCTAAGCAGTAGGGAATCAAATCAAAGGC-G-A--TA-AGG
1 CTTAACCCCCTAAGCAGTAGGG--T--AA-C--AGGCTGAATTTACAGT
*
44877729 CTTAACCCCCTAAGCAATAGGGTAACAGGCTGAATTTACAGCT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAG-T
*
44877772 CTTAACCCACTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGG
44877794 AATCAGATCA
Statistics
Matches: 87, Mismatches: 9, Indels: 26
0.71 0.07 0.21
Matches are distributed among these distances:
37 4 0.05
38 1 0.01
39 2 0.02
40 2 0.02
41 2 0.02
42 3 0.03
43 38 0.44
44 21 0.24
45 3 0.03
46 2 0.02
47 2 0.02
48 2 0.02
49 1 0.01
50 4 0.05
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (42 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGT
Found at i:44877837 original size:87 final size:88
Alignment explanation
Indices: 44877638--44877842 Score: 315
Period size: 87 Copynumber: 2.4 Consensus size: 88
44877628 GTGAAGCCAC
* ** *
44877638 AGGCCTTAAACCCCTAAGCAGCAAAGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGT
1 AGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCACTAAGCAGT
44877703 AGGGAATCAAATCAAAGGCGATA
66 AGGGAATCAAATCAAAGGCGATA
* * *
44877726 AGG-CTTAACCCCCTAAGCAATAGGGTAACAGGCTGAATTTACAGCTCTTAACCCACTAAGCAGT
1 AGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCACTAAGCAGT
*
44877790 AGGGAATCAGATCAAAGGCGAT-
66 AGGGAATCAAATCAAAGGCGATA
*
44877812 GGGCCTTAAACCCCTAAGCAGTAGGGTAACA
1 AGGCCTTAAACCCCTAAGCAGTAGGGTAACA
44877843 TGTAACGCCC
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
86 2 0.02
87 100 0.95
88 3 0.03
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (88 bp):
AGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCACTAAGCAGT
AGGGAATCAAATCAAAGGCGATA
Found at i:44878177 original size:32 final size:32
Alignment explanation
Indices: 44878141--44878205 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
44878131 TGTATGCATT
44878141 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
44878173 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
44878205 T
1 T
44878206 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:44879717 original size:26 final size:26
Alignment explanation
Indices: 44879687--44879739 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
44879677 TTTATAGTTT
44879687 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
44879713 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
44879739 T
1 T
44879740 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:44880870 original size:44 final size:44
Alignment explanation
Indices: 44880816--44881670 Score: 184
Period size: 44 Copynumber: 19.6 Consensus size: 44
44880806 ATTTACAGAT
* *
44880816 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAAGTGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
* * ** * **
44880860 CTTAAACCCCTAAGCAATAGGGTAACAG-GCTG-AA-TTTTCAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAAGTGAT-GGGC
* * * * *
44880903 CTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATC-AAAGACGGTGAGC
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAGATCGAAAG-TGATGGGC
* * * * ** **
44880947 CTT-GACCCCTAAGCAGTAGGGTAACAG-GCTG-AATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAAGTGATGGGC
* * * * * *
44880989 CTT-ATCACCATAAGTAGTAGGGAAACAGATCG-AAGACGATGGAC
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGATCGAAAG-TGATGGGC
* * * * * ** **
44881033 CTT-AACCCCTAAGCAGTAGGTTAACAGGTTG-AATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
* * * * *
44881075 CTT-AAGCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
* * * * * ** **
44881118 CTTAAACCCCTAAGTAGTAGGGTAATAG-GCTG-AATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAAGTGATGGGC
* * *
44881161 CTTAACCCCCTAAGTAGTAGGG--ACTTAGATC-AAAGGCGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAAC--AGATCGAAA-GTGATGGGC
* * * ** **
44881205 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTG-AATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAAGTGATGGGC
* * * *
44881248 CTT-AACCCGCTAAGCAATAGGGAAACAGATCGAAGGCGATGGGC
1 CTTAAACCC-CTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
* * * ** **
44881292 CCT-AACCCTCTAGGCAGTAGGGTAACAG-GCTG-AAGATGTACAGAT
1 CTTAAACCC-CTAAGCAGTAGGGTAACAGATC-GAAAG-TG-ATGGGC
* * *
44881337 CTTAACCCCCTAAGTAGTAGGGAAACAGATCG-AAGATGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAG-TGATGGGC
* * * * * ** **
44881381 CCTAACCCCCTAAGCAGTAGGGTAGCAG---GAAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
* * * *
44881422 CTT-AACCCCTTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGC
1 CTTAAACCCC-TAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
* * * * * *
44881466 CTTAACCCCCTAAGCAGTAGGGTAGCAG-GCTG-AAGATTATAGGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAAG-TGATGGGC
** * *
44881510 CTT-GTCTCCCTAAGCAGTAGTGG-AGCAGATCGACAACG-CATGGGC
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAGATCGA-AA-GTGATGGGC
* * * * * **
44881555 CTTAAA-CCCTAAACAGTAGGGTAGCAGGCTAGAAA-T-TTGCAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACA-GATCGAAAGTGATG--GGC
* * * * * *
44881599 CTTAACCCCCTAAACAGTAGGGAAACAGATTGAAGGAGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
44881643 CTTAAACCCCTAAGCAGTAGGGTAACAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAG
44881671 GTTGGAAAGT
Statistics
Matches: 555, Mismatches: 199, Indels: 114
0.64 0.23 0.13
Matches are distributed among these distances:
40 5 0.01
41 23 0.04
42 49 0.09
43 152 0.27
44 249 0.45
45 65 0.12
46 11 0.02
47 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (44 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAAGTGATGGGC
Found at i:44880949 original size:87 final size:87
Alignment explanation
Indices: 44880795--44881671 Score: 1004
Period size: 87 Copynumber: 10.1 Consensus size: 87
44880785 GGGTGTTACA
*
44880795 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAAG-TGATGGG
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-AAAGACGATGGG
*
44880859 CCTTAAACCCCTAAGCAATAGGG
65 CCTTAAACCCCTAAGCAGTAGGG
* * * * * *
44880882 TAACAGGCTGAATTTTCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGGTGAG
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCAAAGACGATGGG
*
44880946 CCTT-GACCCCTAAGCAGTAGGG
65 CCTTAAACCCCTAAGCAGTAGGG
* * * * * *
44880968 TAACAGGCTGAATTTACAGATCTTATCACCATAAGTAGTAGGGAAACAGATCGAAGACGATGGAC
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGC
*
44881033 CTT-AACCCCTAAGCAGTAGGT
66 CTTAAACCCCTAAGCAGTAGGG
* * * * *
44881054 TAACAGGTTGAATTTACAGATCTTAA-GCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGC
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGC
*
44881118 CTTAAACCCCTAAGTAGTAGGG
66 CTTAAACCCCTAAGCAGTAGGG
* * *** *
44881140 TAATAGGCTGAATTTACAGATCTTAACCCCCTAAGTAGTAGGGACTTAGATCAAAGGCGATGGGC
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGC
44881205 CTTAAACCCCTAAGCAGTAGGG
66 CTTAAACCCCTAAGCAGTAGGG
* * * *
44881227 TAACAGGCTGAATTTACAGATCTTAACCCGCTAAGCAATAGGGAAACAGATCGAAGGCGATGGGC
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGC
* *
44881292 CCT-AACCCTCTAGGCAGTAGGG
66 CTTAAACCC-CTAAGCAGTAGGG
* * * *
44881314 TAACAGGCTGAAGATGTACAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGG
1 TAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGG
* *
44881379 GCCCTAACCCCCTAAGCAGTAGGG
64 GCCTTAAACCCCTAAGCAGTAGGG
* * * * * *
44881403 TAGCAGG--AAATTTACAGATCTTAACCCCTTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGC
1 TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGC
*
44881466 CTTAACCCCCTAAGCAGTAGGG
66 CTTAAACCCCTAAGCAGTAGGG
* * * * ** * * *
44881488 TAGCAGGCTGAAGATTATAGGTCTTGTCTCCCTAAGCAGTAGTGG-AGCAGATCGACA-ACGCAT
1 TAACAGGCTGAA-TTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATC-AAAGACG-AT
*
44881551 GGGCCTTAAA-CCCTAAACAGTAGGG
62 GGGCCTTAAACCCCTAAGCAGTAGGG
* * * * *
44881576 TAGCAGGCTAGAAATTTGCAGATCTTAACCCCCTAAACAGTAGGGAAACAGATTGAAGGA-GATG
1 TAACAGGCT-G-AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA-TCAAAGACGATG
44881640 GGCCTTAAACCCCTAAGCAGTAGGG
63 GGCCTTAAACCCCTAAGCAGTAGGG
44881665 TAACAGG
1 TAACAGG
44881672 TTGGAAAGTA
Statistics
Matches: 673, Mismatches: 96, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
85 113 0.17
86 162 0.24
87 188 0.28
88 71 0.11
89 131 0.19
90 8 0.01
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (87 bp):
TAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGC
CTTAAACCCCTAAGCAGTAGGG
Found at i:44881086 original size:42 final size:41
Alignment explanation
Indices: 44880953--44881182 Score: 135
Period size: 43 Copynumber: 5.4 Consensus size: 41
44880943 GAGCCTTGAC
*
44880953 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTA--A
* * * * * * *
44880996 CCATAAGTAGTAGGGAAACAGATCGAA--GACGATGGACCTTAA
1 CCCTAAGCAGTAGGGTAACAGGTTGAATTTAC-A--GATCTTAA
*
44881038 CCCCTAAGCAGTAGGTTAACAGGTTGAATTTACAGATCTTAA
1 -CCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAA
* * * ** *
44881080 GCCCTAAGCAGTAGGGAAACAGATCGAA--GGCGATGAGCCTTAAA
1 -CCCTAAGCAGTAGGGTAACAGGTTGAATTTAC-A-GA-TCTT-AA
* * *
44881124 CCCCTAAGTAGTAGGGTAATAGGCTGAATTTACAGATCTTAA
1 -CCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAA
*
44881166 CCCCCTAAGTAGTAGGG
1 --CCCTAAGCAGTAGGG
44881183 ACTTAGATCA
Statistics
Matches: 140, Mismatches: 34, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 36 0.26
43 64 0.46
44 32 0.23
45 3 0.02
46 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAA
Found at i:44883533 original size:13 final size:13
Alignment explanation
Indices: 44883476--44883535 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
44883466 ATATATTGTA
*
44883476 TATT-TCTAATAC
1 TATTATCTATTAC
44883488 TATTATGCTATTAC
1 TATTAT-CTATTAC
* *
44883502 CATTACTATTATTAC
1 TATTA-T-CTATTAC
*
44883517 TATTATCTATTAT
1 TATTATCTATTAC
44883530 TATTAT
1 TATTAT
44883536 TATATTTTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 4 0.11
13 12 0.32
14 11 0.29
15 11 0.29
ACGTcount: A:0.32, C:0.13, G:0.02, T:0.53
Consensus pattern (13 bp):
TATTATCTATTAC
Found at i:44883850 original size:23 final size:23
Alignment explanation
Indices: 44883822--44883866 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
44883812 ACCATCACTA
*
44883822 TTATTTATATTATCATATTATTG
1 TTATTTATATTACCATATTATTG
* *
44883845 TTATTTTTTTTACCATATTATT
1 TTATTTATATTACCATATTATT
44883867 ATTTCCTATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (23 bp):
TTATTTATATTACCATATTATTG
Found at i:44883948 original size:3 final size:3
Alignment explanation
Indices: 44883940--44884072 Score: 85
Period size: 3 Copynumber: 44.7 Consensus size: 3
44883930 AATTTCACTT
* * * *
44883940 TTA TTA TTA TTA CTA -TA TTA TCA TTG TTA TTA TTA TT- TTCCA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA
* * * * *
44883985 TTA TTA ATA TTA ATA TTAA TT- TTC TTA TTA TTA CTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
44884030 TCA TAA GTA TTA -TA TTA TTA TTA TCA TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
44884073 GTCTTTTATA
Statistics
Matches: 98, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
2 8 0.08
3 86 0.88
4 3 0.03
5 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:44884084 original size:18 final size:20
Alignment explanation
Indices: 44884039--44884086 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
44884029 ATCATAAGTA
44884039 TTATATTATTATTATCATTG
1 TTATATTATTATTATCATTG
*
44884059 TTATTATTATTATTGTC-TT-
1 TTA-TATTATTATTATCATTG
44884078 TTATATTAT
1 TTATATTAT
44884087 CCTTTTACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 6 0.23
19 3 0.12
20 5 0.19
21 12 0.46
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (20 bp):
TTATATTATTATTATCATTG
Found at i:44891728 original size:55 final size:55
Alignment explanation
Indices: 44891630--44891733 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
44891620 AATTTTAAAT
* *
44891630 ACGGCCATGGCACACGCCCGTATGACCAGCCCGTGTTCAATACTGACTTTGGGAC
1 ACGGCCATGGCACACGCCCGTATGACCAGCCCGTGTCCAATACTAACTTTGGGAC
* * * *
44891685 ACGGCTATGGCACACGTCCGTGTGACCTA-CCCGTGTCCTATACTAACTT
1 ACGGCCATGGCACACGCCCGTATGACC-AGCCCGTGTCCAATACTAACTT
44891734 AAATTTTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 41 0.98
56 1 0.02
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23
Consensus pattern (55 bp):
ACGGCCATGGCACACGCCCGTATGACCAGCCCGTGTCCAATACTAACTTTGGGAC
Found at i:44897267 original size:14 final size:14
Alignment explanation
Indices: 44897222--44897286 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
44897212 TTATTTTATC
*
44897222 ATATATTTTATCTAT
1 ATATATTTTAT-TTT
* * *
44897237 AAATTATATTATATT
1 ATA-TATTTTATTTT
44897252 ATATATTTTATTTT
1 ATATATTTTATTTT
*
44897266 ATATA-TTT-CTTT
1 ATATATTTTATTTT
44897278 ATATATTTT
1 ATATATTTT
44897287 TATAAAATTG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.20
13 6 0.15
14 14 0.35
15 5 0.12
16 7 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATATTTTATTTT
Found at i:44897629 original size:21 final size:21
Alignment explanation
Indices: 44897605--44897645 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
44897595 TTTCTTATAT
*
44897605 TTTTATATATTATTTATTTTG
1 TTTTATATACTATTTATTTTG
*
44897626 TTTTTTATACTATTTATTTT
1 TTTTATATACTATTTATTTT
44897646 ACTATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTATATACTATTTATTTTG
Found at i:44914389 original size:40 final size:40
Alignment explanation
Indices: 44914294--44914535 Score: 348
Period size: 40 Copynumber: 6.0 Consensus size: 40
44914284 TGGATGATAA
*
44914294 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
44914335 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
44914375 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
44914415 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
44914455 CCAGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
44914495 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
44914534 CC
1 CC
44914536 AGTTAAATCC
Statistics
Matches: 185, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 15 0.08
40 140 0.76
41 24 0.13
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:44921879 original size:40 final size:40
Alignment explanation
Indices: 44921787--44921922 Score: 161
Period size: 40 Copynumber: 3.4 Consensus size: 40
44921777 TGTAACAACC
* *
44921787 AGCACGAATGCCTTCGGGACTTAACCCAGTTATAATAACCC
1 AGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAA-CT
44921828 A-CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACT
1 AGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACT
** * *
44921867 AGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGTAACT
1 AGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAATAACT
*
44921907 AGCACAAATGCCTTCG
1 AGCACGAATGCCTTCG
44921923 AATCTTAGTC
Statistics
Matches: 84, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
39 7 0.08
40 74 0.88
41 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACT
Found at i:44921928 original size:40 final size:40
Alignment explanation
Indices: 44921852--44921939 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
44921842 GGGACTTAAC
* * *
44921852 CCGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGAATCTTAGT
*
44921892 CCGGATATAGTAACTAGCACAAATGCCTTCGAATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGAATCTTAGT
44921932 CCGGATAT
1 CCGGATAT
44921940 CATCCGAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGAATCTTAGT
Found at i:44923695 original size:27 final size:27
Alignment explanation
Indices: 44923665--44923756 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
44923655 ATTACCAAAG
*
44923665 TACCCACGATTTATAAAATTACTGTTT
1 TACCCACGATTTAAAAAATTACTGTTT
** * *
44923692 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCACGATTTAAAAAATTACTGTTT
*
44923719 TA-CCATCGATTTAAAAAATTACCGTTT
1 TACCCA-CGATTTAAAAAATTACTGTTT
*
44923746 TACCCTCGATT
1 TACCCACGATT
44923757 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 49 0.92
28 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCACGATTTAAAAAATTACTGTTT
Found at i:44923778 original size:27 final size:26
Alignment explanation
Indices: 44923748--44923889 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 26
44923738 TACCGTTTTA
**
44923748 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
44923775 CCCT-ATAGGGTAGAATTACCAAAATAC
1 CCCTGATTGTG-A-AATTACCAAAATAC
* *
44923802 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * * *
44923829 CACTGGTTTTGAAATTACCGAAATA-
1 CCCTGATTGTGAAATTACCAAAATAC
* * *
44923854 CCCTCAATTTGTAAAATTATCAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
44923882 CCCTGATT
1 CCCTGATT
44923890 TACAAAATTA
Statistics
Matches: 87, Mismatches: 21, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
25 7 0.08
26 20 0.23
27 53 0.61
28 5 0.06
29 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:44923890 original size:27 final size:27
Alignment explanation
Indices: 44923788--44923899 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
44923778 TATAGGGTAG
44923788 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
44923815 AATTACCAAAATACCACTGGTTT-TGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
44923841 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* **
44923868 AATTATCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
44923895 AATTA
1 AATTA
44923900 TAGAAATACC
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.04
26 17 0.25
27 44 0.65
28 4 0.06
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:44923906 original size:27 final size:27
Alignment explanation
Indices: 44923848--44923969 Score: 115
Period size: 27 Copynumber: 4.4 Consensus size: 27
44923838 TGAAATTACC
** **
44923848 GAAATACCCTCAATTTGTAAAATTATCA
1 GAAATACCCTTGATTTACAAAATTAT-A
*
44923876 -AAATACCCCTGATTTACAAAATTATA
1 GAAATACCCTTGATTTACAAAATTATA
44923902 GAAATACCCTTGACTTT-CTAAAAATTATA
1 GAAATACCCTTGA-TTTAC--AAAATTATA
* *
44923931 GAAATACCATTGGTTTACAAAATTACT-
1 GAAATACCCTTGATTTACAAAATTA-TA
44923958 GAAATACCCTTG
1 GAAATACCCTTG
44923970 GTTTGTAGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.01
27 50 0.63
28 7 0.09
29 21 0.27
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
GAAATACCCTTGATTTACAAAATTATA
Found at i:44924938 original size:25 final size:25
Alignment explanation
Indices: 44924900--44924969 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
44924890 AGGAAATGCT
*
44924900 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
44924925 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
44924950 AAAAGGGCTTTGCCTCAGTT
1 AAAAGGGCTTTGCCCCAGTT
44924970 ATTACAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:44925236 original size:30 final size:31
Alignment explanation
Indices: 44925189--44925269 Score: 123
Period size: 30 Copynumber: 2.7 Consensus size: 31
44925179 CACTTATAGT
* *
44925189 AAAGGCTTC-GACCAGTGATATTATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
44925218 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
44925249 AAAGGCTTCGGCCCAGT-ATAT
1 AAAGGCTTCGGCCCAGTGATAT
44925270 ATCGAGACTG
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
29 9 0.19
30 22 0.46
31 17 0.35
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:44929679 original size:42 final size:41
Alignment explanation
Indices: 44929563--44929679 Score: 94
Period size: 43 Copynumber: 2.8 Consensus size: 41
44929553 ATCTGAGATA
* * * *
44929563 TCGTGTAAGACCGTGCCTAGGACAGAGGCCTCGATTGATATT
1 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATTGA-ATT
* * * *
44929605 TACGTATAAGACCATGTTTGAGACATCA-GCATCGTATCTG-ATT
1 T-CGTGTAAGACCATGTCTGGGACA-GAGGCATCG-AT-TGAATT
*
44929648 TCGTGTAAGACCCTGTCTGGGACAGAGGCATC
1 TCGTGTAAGACCATGTCTGGGACAGAGGCATC
44929680 AATATTGAAT
Statistics
Matches: 57, Mismatches: 13, Indels: 10
0.71 0.16 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.44
43 26 0.46
44 3 0.05
45 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATTGAATT
Found at i:44930515 original size:13 final size:13
Alignment explanation
Indices: 44930497--44930532 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
44930487 TTAAAAATCG
44930497 CACGGCCTTGACA
1 CACGGCCTTGACA
44930510 CACGGCCTTGACA
1 CACGGCCTTGACA
*
44930523 CACGGTCTTG
1 CACGGCCTTG
44930533 TCATATGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.19, C:0.36, G:0.25, T:0.19
Consensus pattern (13 bp):
CACGGCCTTGACA
Found at i:44951499 original size:18 final size:18
Alignment explanation
Indices: 44951472--44951525 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
44951462 TCAACTTCTT
*
44951472 ATAATTATAATGAAAATA
1 ATAATAATAATGAAAATA
** *
44951490 ATAATAATAATTCAATTA
1 ATAATAATAATGAAAATA
44951508 ATAATAACATAATGAAAA
1 ATAAT-A-ATAATGAAAA
44951526 CCTTATTACA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 19 0.70
19 1 0.04
20 7 0.26
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (18 bp):
ATAATAATAATGAAAATA
Found at i:44953859 original size:80 final size:79
Alignment explanation
Indices: 44953722--44953946 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
44953712 TTGAATGCTG
* * * ** * * * * *
44953722 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
44953786 TGTGCGAGATATTAAA
64 TGTGCGAGATATTAAA
* * * *
44953802 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* *
44953867 GTGCGAGTTGTTAAA
65 GTGCGAGATATTAAA
* * * *
44953882 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
44953947 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 83 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATTAAA
Found at i:44953932 original size:39 final size:40
Alignment explanation
Indices: 44953775--44953944 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
44953765 GGACTAAGAT
* * * *
44953775 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
*
44953815 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
*
44953855 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
* * * * *
44953895 CCGAAGGCATT-GTGTGAGTTACTAAAACTGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
44953934 CCGAAGGCATT
1 CCGAAGGCATT
44953945 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.28
40 86 0.72
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
Found at i:44956912 original size:31 final size:31
Alignment explanation
Indices: 44956877--44956940 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
44956867 CCTTCTCATA
*
44956877 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
44956908 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
44956939 TT
1 TT
44956941 ACTATAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:44957194 original size:24 final size:25
Alignment explanation
Indices: 44957149--44957256 Score: 125
Period size: 25 Copynumber: 4.4 Consensus size: 25
44957139 CTGGAGACCT
*
44957149 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
*
44957173 AGTCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
44957198 AGCCCTTTTAATAAACT-GGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
44957222 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
44957247 AGCCCTTTTG
1 AGCCCTTTTG
44957257 CACTTCCTCT
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
23 7 0.10
24 29 0.40
25 33 0.45
26 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:44957215 original size:49 final size:48
Alignment explanation
Indices: 44957149--44957255 Score: 137
Period size: 49 Copynumber: 2.2 Consensus size: 48
44957139 CTGGAGACCT
*
44957149 AGCCTCTTTTAATAACTGGGGC-AAAGTCCTTTT-GATAAACTGGGGCAAA
1 AGCC-CTTTTAATAACT-GGGCAAAAGCCCTTTTCGATAAACTGGGGC-AA
* *
44957198 AGCCCTTTTAATAAACTGGGCAAAAGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTAAT-AACTGGGCAAAAGCCCTTTTCGATAAACTGGGGCAA
44957247 AGCCCTTTT
1 AGCCCTTTT
44957256 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 12 0.23
49 28 0.54
50 12 0.23
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGCAAAAGCCCTTTTCGATAAACTGGGGCAA
Found at i:44957335 original size:19 final size:19
Alignment explanation
Indices: 44957302--44957353 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
44957292 TTATGAATAC
44957302 ATCATGTGCATATCAT-ACA
1 ATCATGTG-ATATCATAACA
44957321 TATCATGTGATATCATAACA
1 -ATCATGTGATATCATAACA
44957341 ATCATGT-ATATCA
1 ATCATGTGATATCA
44957354 AATCCTATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.19
19 14 0.45
20 11 0.35
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (19 bp):
ATCATGTGATATCATAACA
Found at i:44965011 original size:30 final size:31
Alignment explanation
Indices: 44964955--44965017 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
44964945 CCTTTTCGTA
44964955 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
44964986 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
44965016 TT
1 TT
44965018 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:44965265 original size:24 final size:25
Alignment explanation
Indices: 44965225--44965307 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
44965215 CTGGAGACCT
44965225 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
44965249 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
44965274 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
44965299 AGCCCTTTT
1 AGCCCTTTT
44965308 CGGTAAACTA
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 35 0.64
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:44965321 original size:26 final size:24
Alignment explanation
Indices: 44965225--44965332 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
44965215 CTGGAGACCT
*
44965225 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
44965249 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
*
44965274 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* * *
44965299 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
44965324 AGCCCTTTT
1 AGCCCTTTT
44965333 TGCACTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
23 7 0.09
24 13 0.17
25 45 0.60
26 10 0.13
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:44965403 original size:20 final size:19
Alignment explanation
Indices: 44965376--44965445 Score: 97
Period size: 20 Copynumber: 3.6 Consensus size: 19
44965366 TGCATTATGA
*
44965376 ATAC-ATCATGTGCATACC
1 ATACAATCATGTGCATATC
*
44965394 ATACATATCATATGCATATC
1 ATACA-ATCATGTGCATATC
44965414 ATACAATCATGTGCATATC
1 ATACAATCATGTGCATATC
44965433 ATATCAATCATGT
1 ATA-CAATCATGT
44965446 ATATCAAATC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
18 4 0.09
19 16 0.35
20 26 0.57
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (19 bp):
ATACAATCATGTGCATATC
Found at i:44965413 original size:11 final size:11
Alignment explanation
Indices: 44965380--44965436 Score: 52
Period size: 11 Copynumber: 5.6 Consensus size: 11
44965370 TTATGAATAC
*
44965380 ATCATGTGCAT
1 ATCATATGCAT
*
44965391 ACCATA--CAT
1 ATCATATGCAT
44965400 ATCATATGCAT
1 ATCATATGCAT
44965411 ATCATA--CA-
1 ATCATATGCAT
*
44965419 ATCATGTGCAT
1 ATCATATGCAT
44965430 ATCATAT
1 ATCATAT
44965437 CAATCATGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
8 5 0.14
9 10 0.28
10 2 0.06
11 19 0.53
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:44973235 original size:48 final size:48
Alignment explanation
Indices: 44973151--44973425 Score: 329
Period size: 48 Copynumber: 5.7 Consensus size: 48
44973141 AAAGTACTAG
* ** * *
44973151 TGCCATGTCCCCA-ACATGGTCTTACATGAATC-CACATATCATCGTCGA
1 TGCCATGT-CCCAGACATGGTCTTACA-CAGGCACATATATCATCGCCGA
* * * * * *
44973199 TACCATATCCCAGACATGGTATTACACTGGCACACATATCATCACCGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
*
44973247 TGCCATGTCCTAGACATGGTCTTACACAGGCACATATATCATCGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
* *
44973295 TGCCATGTCCCAGACATGGTCTTACACAGACACATATATCATCGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
* * * *
44973343 TCCCATGTCCCAGACATGGTCTTACACAGGCACATATATTATTGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
* * *
44973391 TTCCATGTCCCAAACATGGTCTTACACAGGTACAT
1 TGCCATGTCCCAGACATGGTCTTACACAGGCACAT
44973426 CTCAGATGTC
Statistics
Matches: 197, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 5 0.03
48 192 0.97
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGA
Found at i:44973411 original size:144 final size:143
Alignment explanation
Indices: 44973151--44973425 Score: 365
Period size: 144 Copynumber: 1.9 Consensus size: 143
44973141 AAAGTACTAG
*
44973151 TGCCATGTCCCCAACATGGTCTTACATGAATCCACATATCATCGTCGATACCATATCCCAGACAT
1 TGCCATGTCCCCAACATGGTCTTACAAGAA-CCACATATCATCGTCGATACCATATCCCAGACAT
* * *
44973216 GGTATTACACTGGCACACATATCATCACCGATGCCATGTCCTAGACATGGTCTTACACAGGCACA
65 GGTATTACACAGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACA
44973281 TATATCATCGCCGA
130 TATATCATCGCCGA
* * *
44973295 TGCCATGT-CCCAGACATGGTCTTACACAG-ACACATATATCATCGTCGATCCCATGTCCCAGAC
1 TGCCATGTCCCCA-ACATGGTCTTACA-AGAAC-CACATATCATCGTCGATACCATATCCCAGAC
* * * ** * * *
44973358 ATGGTCTTACACAGGCACATATATTATTGCTGATTCCATGTCCCAAACATGGTCTTACACAGGTA
63 ATGGTATTACACAGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCA
44973423 CAT
128 CAT
44973426 CTCAGATGTC
Statistics
Matches: 113, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
143 5 0.04
144 107 0.95
145 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (143 bp):
TGCCATGTCCCCAACATGGTCTTACAAGAACCACATATCATCGTCGATACCATATCCCAGACATG
GTATTACACAGGCACACATATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACAT
ATATCATCGCCGA
Found at i:44973707 original size:14 final size:15
Alignment explanation
Indices: 44973680--44973708 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
44973670 TCATGTAATG
44973680 TCAAGTATTAACATT
1 TCAAGTATTAACATT
44973695 TCAAGTA-TAACATT
1 TCAAGTATTAACATT
44973709 GTGTTCTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (15 bp):
TCAAGTATTAACATT
Found at i:44977044 original size:9 final size:10
Alignment explanation
Indices: 44977025--44977054 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
44977015 ATTAAATCGA
44977025 ATACTTTCAC
1 ATACTTTCAC
44977035 ATAC-TTCAC
1 ATACTTTCAC
44977044 ATACTTTCAC
1 ATACTTTCAC
44977054 A
1 A
44977055 CCCTGACCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (10 bp):
ATACTTTCAC
Found at i:44977351 original size:44 final size:45
Alignment explanation
Indices: 44977257--44977369 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 45
44977247 CACCAGATTT
*
44977257 GCCTGCTAGGCTCG-AGGCTCG-ATATCAGTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGGCATTATA
*
44977300 GCCTGCTAGGCTCGAAGGCCCGAATAGT-A-TTCATCGGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCGAATA-TCAGTTCACCGGCATTATA
** * *
44977344 GTTTGCTAAGCTCAAAGGCCCGAATA
1 GCCTGCTAGGCTCGAAGGCCCGAATA
44977370 ATCAAGTCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 14 0.23
44 42 0.69
45 4 0.07
46 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (45 bp):
GCCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGGCATTATA
Found at i:44977795 original size:37 final size:37
Alignment explanation
Indices: 44977753--44977973 Score: 261
Period size: 37 Copynumber: 6.0 Consensus size: 37
44977743 TACGAAGCCG
* * *
44977753 TATAATACCAGCACTAGGCCTGCGGGATTTATCCCGA
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
*
44977790 TATAATACCAGCACGAAGCCTGCGGGATTTAACCGGA
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
* * *
44977827 TAT-TTACCAGCACGAAG-CTTCGGGTCTTTAAGCCCGGA
1 TATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCC-GA
* *
44977865 TAT-TTACCAGCACGAAGCCTGTGGGATTTAACCCGGA
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCC-GA
*
44977902 TATAATACCAGCACGAAGCTTGCGGGATTTAA-CCGA
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
* **
44977938 TATAATACCAACACGAAGCCTATGGGATTTAACCCG
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
44977974 GATAGACATC
Statistics
Matches: 160, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
35 6 0.04
36 48 0.30
37 52 0.32
38 49 0.31
39 5 0.03
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (37 bp):
TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
Found at i:44977873 original size:38 final size:37
Alignment explanation
Indices: 44977758--44977977 Score: 222
Period size: 38 Copynumber: 5.9 Consensus size: 37
44977748 AGCCGTATAA
* * * * *
44977758 TACCAGCACTAGGCCTGCGGGATTTATCCC-GATATAA
1 TACCAGCACGAAGCCTTCGGGATTTAACCCGGATAT-T
*
44977795 TACCAGCACGAAGCCTGCGGGATTTAA-CCGGATATT
1 TACCAGCACGAAGCCTTCGGGATTTAACCCGGATATT
*
44977831 TACCAGCACGAAG-CTTCGGGTCTTTAAGCCCGGATATT
1 TACCAGCACGAAGCCTTCGGG-ATTTAA-CCCGGATATT
*
44977869 TACCAGCACGAAGCCTGT-GGGATTTAACCCGGATATAA
1 TACCAGCACGAAGCCT-TCGGGATTTAACCCGGATAT-T
*
44977907 TACCAGCACGAAG-CTTGCGGGATTTAA-CC-GATATAA
1 TACCAGCACGAAGCCTT-CGGGATTTAACCCGGATAT-T
*
44977943 TACCAACACGAAGCCTAT-GGGATTTAACCCGGATA
1 TACCAGCACGAAGCCT-TCGGGATTTAACCCGGATA
44977978 GACATCGAAT
Statistics
Matches: 161, Mismatches: 9, Indels: 25
0.83 0.05 0.13
Matches are distributed among these distances:
35 6 0.04
36 49 0.30
37 46 0.29
38 54 0.34
39 5 0.03
40 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (37 bp):
TACCAGCACGAAGCCTTCGGGATTTAACCCGGATATT
Found at i:44977969 original size:112 final size:110
Alignment explanation
Indices: 44977758--44977977 Score: 302
Period size: 112 Copynumber: 2.0 Consensus size: 110
44977748 AGCCGTATAA
* * *
44977758 TACCAGCACTAGGCCTGCGGGATTTATCCCGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
* * *
44977823 CGGATATTTACCAGCACGAAGCTTCGGGTCTTTAAGCCCGGATATT
66 CGGATATATACCAACACGAAGCTTCGGGTATTTAA-CCCGGATATT
* *
44977869 TACCAGCACGAAGCCTGTGGGATTTAACCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAA
1 TACCAGCACGAAGCCTGCGGGATTTAACCC-GATATAATACCAGCACGAAGCCTGCGGGATTTAA
44977934 CC-GATATAATACCAACACGAAGCCTAT-GGG-ATTTAACCCGGATA
65 CCGGATAT-ATACCAACACGAAG-CT-TCGGGTATTTAACCCGGATA
44977978 GACATCGAAT
Statistics
Matches: 97, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
111 39 0.40
112 52 0.54
113 5 0.05
114 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (110 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
CGGATATATACCAACACGAAGCTTCGGGTATTTAACCCGGATATT
Found at i:44989505 original size:40 final size:40
Alignment explanation
Indices: 44989423--44989644 Score: 193
Period size: 40 Copynumber: 5.6 Consensus size: 40
44989413 TTGAATGCTG
* * *
44989423 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGA-T-AATAAA
* * * *
44989462 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGATAATAAA
* * *
44989502 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* * **
44989542 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* * * * *
44989582 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* *
44989621 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
44989645 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 45 0.28
40 107 0.66
41 9 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
Found at i:44989559 original size:80 final size:79
Alignment explanation
Indices: 44989423--44989646 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
44989413 TTGAATGCTG
* * * * * * * * *
44989423 TCCGGGCTAAGT-CCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
44989486 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * * *
44989502 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
44989567 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
44989582 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
44989647 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
79 47 0.39
80 71 0.58
81 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:44989626 original size:39 final size:40
Alignment explanation
Indices: 44989475--44989644 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
44989465 GGACTAAGAT
* * *
44989475 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
*
44989515 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
44989555 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
44989595 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
44989634 CCGAAGGCATT
1 CCGAAGGCATT
44989645 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.29
40 85 0.71
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:44989664 original size:79 final size:80
Alignment explanation
Indices: 44989497--44989679 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
44989487 GTGCGAGATA
* * *
44989497 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
44989562 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
44989577 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
44989641 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* * *
44989656 CTATATCC-GGTTAAATCCCAAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
44989680 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 13 0.15
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:44991095 original size:25 final size:24
Alignment explanation
Indices: 44991067--44991172 Score: 83
Period size: 25 Copynumber: 4.3 Consensus size: 24
44991057 GTATGCTCAT
*
44991067 ACGAGCTATGAATCAGTATGCTCTC
1 ACGAGCT-TGAATCAGTAAGCTCTC
* **
44991092 ACGAGC-TGCAAATCGGTAAGCTCAA
1 ACGAGCTTG--AATCAGTAAGCTCTC
44991117 ACGAGCTTAGAATCAGTAAGCTCTC
1 ACGAGCTT-GAATCAGTAAGCTCTC
* *
44991142 ACAAGC-TGCAATCGGTAAGCTCAT-
1 ACGAGCTTG-AATCAGTAAGCTC-TC
44991166 ACGAGCT
1 ACGAGCT
44991173 GAGAATCTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
23 3 0.05
24 18 0.28
25 41 0.64
26 1 0.02
27 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (24 bp):
ACGAGCTTGAATCAGTAAGCTCTC
Found at i:44991178 original size:49 final size:49
Alignment explanation
Indices: 44991056--44991179 Score: 178
Period size: 50 Copynumber: 2.5 Consensus size: 49
44991046 TTCTTGTACA
* * *
44991056 GGTATGCTCATACGAGCTATGAATCAGTATGCTCTCACGAGCTGCAAATC
1 GGTAAGCTCATACGAGCTA-GAATCAGTAAGCTCTCACAAGCTGCAAATC
*
44991106 GGTAAGCTCAAACGAGCTTAGAATCAGTAAGCTCTCACAAGCTGC-AATC
1 GGTAAGCTCATACGAGC-TAGAATCAGTAAGCTCTCACAAGCTGCAAATC
44991155 GGTAAGCTCATACGAGCTGAGAATC
1 GGTAAGCTCATACGAGCT-AGAATC
44991180 TATAATCCCT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
48 1 0.01
49 26 0.39
50 38 0.57
51 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (49 bp):
GGTAAGCTCATACGAGCTAGAATCAGTAAGCTCTCACAAGCTGCAAATC
Found at i:45005341 original size:31 final size:31
Alignment explanation
Indices: 45005306--45005369 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
45005296 GTGCCTTTAT
45005306 GGCATAAGTTCTAGATGGAGCCCTTACTTCA
1 GGCATAAGTTCTAGATGGAGCCCTTACTTCA
*
45005337 GGCATAAGTTCTAGATGGAGCCCTTGCTTCA
1 GGCATAAGTTCTAGATGGAGCCCTTACTTCA
45005368 GG
1 GG
45005370 TTTAGCTGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (31 bp):
GGCATAAGTTCTAGATGGAGCCCTTACTTCA
Found at i:45018661 original size:40 final size:40
Alignment explanation
Indices: 45018458--45018639 Score: 285
Period size: 40 Copynumber: 4.5 Consensus size: 40
45018448 CTAACGGGGT
* * * * *
45018458 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
45018498 TAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
45018538 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
45018578 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
45018618 TAAGTCCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGC
45018640 TAGCGACCAT
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
39 2 0.02
40 130 0.98
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:45018667 original size:40 final size:40
Alignment explanation
Indices: 45018458--45018707 Score: 267
Period size: 40 Copynumber: 6.3 Consensus size: 40
45018448 CTAACGGGGT
* * * * *
45018458 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
* *
45018498 TAAGTCCTGAAGGCATTTGTGCGAGTTACTA-ATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
45018538 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
45018578 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* ** * *
45018618 TAAGTCCCGAAGGCATTTGTGCTAGCGACCATATCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* * * ***
45018658 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
*
45018696 TAAATCCCGAAG
1 TAAGTCCCGAAG
45018708 ATAATTGGGT
Statistics
Matches: 183, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 11 0.06
39 15 0.08
40 156 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
Found at i:45020980 original size:23 final size:23
Alignment explanation
Indices: 45020953--45021010 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
45020943 ACGTTTACCG
45020953 CTATTAGCAGCTTTGCAGCATTA
1 CTATTAGCAGCTTTGCAGCATTA
* **
45020976 CTATTAGCAGCTTTGCTGTGTTA
1 CTATTAGCAGCTTTGCAGCATTA
45020999 CTATTAGCAGCT
1 CTATTAGCAGCT
45021011 ACACTGCGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCAGCATTA
Found at i:45024981 original size:27 final size:28
Alignment explanation
Indices: 45024950--45025080 Score: 144
Period size: 27 Copynumber: 4.8 Consensus size: 28
45024940 GGAAAATCAG
*
45024950 TCATTTTACCTTACAGGGGTATTACAGA
1 TCATTTTACCTTATAGGGGTATTACAGA
*
45024978 -CATTTTACCCTATAGGGGTATTACA-A
1 TCATTTTACCTTATAGGGGTATTACAGA
* * *
45025004 TCATTTTATCGTATAGGGGTATTTC-GA
1 TCATTTTACCTTATAGGGGTATTACAGA
** *
45025031 TCATTTTACCTTATAGGGGTATT-TTGG
1 TCATTTTACCTTATAGGGGTATTACAGA
* *
45025058 TCATTTTAACTTATAAGGGTATT
1 TCATTTTACCTTATAGGGGTATT
45025081 TTGGTCATTT
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.01
27 88 0.99
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (28 bp):
TCATTTTACCTTATAGGGGTATTACAGA
Found at i:45025062 original size:54 final size:54
Alignment explanation
Indices: 45024947--45025092 Score: 159
Period size: 54 Copynumber: 2.7 Consensus size: 54
45024937 TAGGGAAAAT
* * *
45024947 CAGTCATTTTACCTTACAGGGGTATTACAGA-CATTTTACCCTATAGGGGTATTA
1 CAGTCATTTTAACTTATAGGGGTATTTC-GATCATTTTACCCTATAGGGGTATTA
* * * * *
45025001 CAATCATTTTATCGTATAGGGGTATTTCGATCATTTTACCTTATAGGGGTATTT
1 CAGTCATTTTAACTTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTA
** * * *
45025055 TGGTCATTTTAACTTATAAGGGTATTTTGGTCATTTTA
1 CAGTCATTTTAACTTATAGGGGTATTTCGATCATTTTA
45025093 TGTAACACCC
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 2 0.03
54 74 0.97
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.42
Consensus pattern (54 bp):
CAGTCATTTTAACTTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTA
Found at i:45026329 original size:40 final size:40
Alignment explanation
Indices: 45026285--45026428 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
45026275 GCTCCTCGTT
*
45026285 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
45026325 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* * * * *
45026365 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
45026406 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
45026429 ACAGCATTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
39 19 0.22
40 61 0.69
41 8 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:45034236 original size:40 final size:40
Alignment explanation
Indices: 45034192--45034335 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
45034182 GCTCCTCGTT
*
45034192 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
45034232 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* * * * *
45034272 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
45034313 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
45034336 ACAGCATTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
39 19 0.22
40 61 0.69
41 8 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:45035982 original size:27 final size:27
Alignment explanation
Indices: 45035934--45036096 Score: 197
Period size: 27 Copynumber: 6.1 Consensus size: 27
45035924 TGGGCTGTCA
*
45035934 CATTTTACCCTAT-GGGGTATTTCTGT
1 CATTTTACCCTATAGGGGTATTTCAGT
*
45035960 CATTTTACCTTATAGGGGTATTTC-GAT
1 CATTTTACCCTATAGGGGTATTTCAG-T
* * *
45035987 CATTTTACCTTACAGGGGTATTTCGGT
1 CATTTTACCCTATAGGGGTATTTCAGT
* * *
45036014 CATTTTACCCTGTAAGAGTATTTCAGT
1 CATTTTACCCTATAGGGGTATTTCAGT
**
45036041 CATTTTACCCTAT-GGGGTATTTTGGT
1 CATTTTACCCTATAGGGGTATTTCAGT
*
45036067 CATTTTACCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATAGGGGTATTTCAGT
45036094 CAT
1 CAT
45036097 ACATGGCCCA
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
26 35 0.30
27 82 0.69
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
CATTTTACCCTATAGGGGTATTTCAGT
Found at i:45036076 original size:53 final size:53
Alignment explanation
Indices: 45035934--45036096 Score: 213
Period size: 53 Copynumber: 3.1 Consensus size: 53
45035924 TGGGCTGTCA
*
45035934 CATTTTACCCTATGGGGTATTTCT-GTCATTTTACCTTATAGGGGTATTTC-GAT
1 CATTTTACCCTATGGGGTATTT-TGGTCATTTTACCCTATAGGGGTATTTCAG-T
* * * * * *
45035987 CATTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTGTAAGAGTATTTCAGT
1 CATTTTACCCTA-TGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGT
*
45036041 CATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGT
45036094 CAT
1 CAT
45036097 ACATGGCCCA
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
53 49 0.53
54 43 0.46
55 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.43
Consensus pattern (53 bp):
CATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGT
Found at i:45039538 original size:47 final size:47
Alignment explanation
Indices: 45039485--45039825 Score: 484
Period size: 47 Copynumber: 7.2 Consensus size: 47
45039475 AATTCTAAAT
*
45039485 TGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
45039532 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
45039579 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
45039627 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
45039676 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
45039723 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * * *
45039770 TGTGACAGGGCCGAGTGGCCAATGTGAGGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
45039817 TGTGATAAG
1 TGTGATAAG
45039826 TCCCGAAGGG
Statistics
Matches: 263, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
47 177 0.67
48 43 0.16
49 43 0.16
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:45039999 original size:37 final size:37
Alignment explanation
Indices: 45039943--45040021 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
45039933 TCGAGCTCTA
* * *
45039943 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
45039980 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45040017 AAGAC
1 AAGAC
45040022 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45047219 original size:46 final size:45
Alignment explanation
Indices: 45047169--45047295 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 45
45047159 TTTGGGCATT
*
45047169 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-C
* *
45047215 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCGAACGC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
45047260 CCAAGCTCATTGATTTGAGTCTGAGTTCGCTTATGG
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45047296 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 4 0.06
46 67 0.94
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:45050513 original size:27 final size:27
Alignment explanation
Indices: 45050483--45050660 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
45050473 ATATCGAGTC
* *
45050483 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
45050510 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
45050537 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
45050565 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45050592 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
45050619 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
45050646 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45050661 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45050622 original size:82 final size:81
Alignment explanation
Indices: 45050504--45050659 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45050494 TGCTATATAA
* *
45050504 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
45050569 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
45050586 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
45050650 CACTTAGTGC
65 CACTTAGTGC
45050660 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45053989 original size:14 final size:14
Alignment explanation
Indices: 45053970--45053996 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45053960 AAACACATTG
45053970 TGAATCTTTTCTAC
1 TGAATCTTTTCTAC
45053984 TGAATCTTTTCTA
1 TGAATCTTTTCTA
45053997 ACTCTGATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (14 bp):
TGAATCTTTTCTAC
Found at i:45058519 original size:31 final size:30
Alignment explanation
Indices: 45058478--45058583 Score: 140
Period size: 31 Copynumber: 3.4 Consensus size: 30
45058468 ACGGTTACTG
* * *
45058478 GGCCGAAGCCTTTTCATAAATCAAACCACT
1 GGCCGAAGCCTTTCCATAAATCATATCACT
*
45058508 AGGTCGAAGCCTTTCCATAAATCATATCACT
1 -GGCCGAAGCCTTTCCATAAATCATATCACT
*
45058539 GGGCTGAAGCCTTTCCATAAATCATATCACT
1 -GGCCGAAGCCTTTCCATAAATCATATCACT
45058570 GGGCCGAAGCCTTT
1 -GGCCGAAGCCTTT
45058584 ATTGTAAACG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (30 bp):
GGCCGAAGCCTTTCCATAAATCATATCACT
Found at i:45058666 original size:41 final size:41
Alignment explanation
Indices: 45058608--45058697 Score: 153
Period size: 41 Copynumber: 2.2 Consensus size: 41
45058598 GGCCCATAGG
*
45058608 GCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
45058649 GCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
45058690 GCCCATTT
1 G-CCATTT
45058698 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 40 0.87
42 6 0.13
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (41 bp):
GCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:45058919 original size:26 final size:26
Alignment explanation
Indices: 45058842--45058964 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
45058832 CCTCTTTAAT
**
45058842 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
45058867 AACTGGGGCA-AAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
***
45058892 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
45058918 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
45058944 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
45058965 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 32 0.37
26 55 0.63
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:45058956 original size:52 final size:51
Alignment explanation
Indices: 45058842--45058964 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
45058832 CCTCTTTAAT
*
45058842 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
*
45058892 AACTGGGGCATAAGCCCTTTTTGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
45058944 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
45058965 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 24 0.35
52 35 0.51
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:45059039 original size:20 final size:20
Alignment explanation
Indices: 45059014--45059080 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
45059004 TTATGAATTC
*
45059014 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
45059034 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
45059054 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
45059074 ATCATGT
1 ATCATGT
45059081 ATATTGTAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:45059045 original size:11 final size:11
Alignment explanation
Indices: 45059014--45059069 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
45059004 TTATGAATTC
45059014 ATCATGTGCAT
1 ATCATGTGCAT
* *
45059025 TTCA--TACAT
1 ATCATGTGCAT
45059034 ATCATGTGCAT
1 ATCATGTGCAT
*
45059045 ATCA--TACAT
1 ATCATGTGCAT
45059054 ATCATGTGCAT
1 ATCATGTGCAT
45059065 ATCAT
1 ATCAT
45059070 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:45060114 original size:47 final size:47
Alignment explanation
Indices: 45060043--45060588 Score: 930
Period size: 47 Copynumber: 11.6 Consensus size: 47
45060033 CCCTTCGGGA
* * * * * *
45060043 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45060090 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45060137 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45060184 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
45060231 CTTATCACATATATACACTTTCACATTCATCACATCGGATATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45060278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45060325 CTTATCACATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45060372 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45060419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45060466 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45060515 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45060562 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45060589 TATTCAAATA
Statistics
Matches: 475, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 430 0.91
49 45 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45060121 original size:25 final size:25
Alignment explanation
Indices: 45060093--45060171 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
45060083 ACTCGGCCCT
45060093 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
45060118 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
45060140 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
45060165 ATCACAT
1 ATCACAT
45060172 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:45064629 original size:40 final size:40
Alignment explanation
Indices: 45064597--45064868 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
45064587 CCAGCATGAT
* * * *
45064597 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
45064637 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
45064677 TGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45064717 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45064757 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
45064797 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
45064837 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
45064869 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:45066354 original size:47 final size:47
Alignment explanation
Indices: 45066278--45066555 Score: 443
Period size: 47 Copynumber: 6.0 Consensus size: 47
45066268 ACAAATGCCC
* * * *
45066278 TTCGGACTTATCACAT-TATACACTTTCACATCCATCACGTTGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
* * *
45066324 CTCGGCCCTATCACATATATACACTTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
45066371 TTCGGCCTTATCACATATATACACTTTCACA-TCATCACATCGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
*
45066417 TTCGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
* *
45066464 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
*
45066511 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
45066556 ATAGCTTATC
Statistics
Matches: 218, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
46 57 0.26
47 161 0.74
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
Found at i:45066437 original size:93 final size:93
Alignment explanation
Indices: 45066278--45066555 Score: 441
Period size: 93 Copynumber: 3.0 Consensus size: 93
45066268 ACAAATGCCC
* * * * *
45066278 TTCGGACTTATCACAT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATAT
1 TTCGGCCTTATCACATATATACACTTTCACAT-CATCACATCGGCCATTCGGCCTTATCACATAT
*
45066342 ATACACTTTCACATTCATCACATTGGCCA
65 ATACACTTTCACATTCATCACATCGGCCA
*
45066371 TTCGGCCTTATCACATATATACACTTTCACATCATCACATCGGCCATTCGACCTTATCACATATA
1 TTCGGCCTTATCACATATATACACTTTCACATCATCACATCGGCCATTCGGCCTTATCACATATA
45066436 TACACTTTCACATTCATCACATCGGCCA
66 TACACTTTCACATTCATCACATCGGCCA
* * *
45066464 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
1 TTCGGCCTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTCGGCCTTATCACATAT
45066529 ATACACTTTCACATTCATCACATCGGC
65 ATACACTTTCACATTCATCACATCGGC
45066556 ATAGCTTATC
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
93 100 0.58
94 72 0.42
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (93 bp):
TTCGGCCTTATCACATATATACACTTTCACATCATCACATCGGCCATTCGGCCTTATCACATATA
TACACTTTCACATTCATCACATCGGCCA
Found at i:45066657 original size:47 final size:47
Alignment explanation
Indices: 45066588--45066799 Score: 379
Period size: 47 Copynumber: 4.5 Consensus size: 47
45066578 ACATGGATTA
*
45066588 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
45066635 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
45066682 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
45066731 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
45066778 CACATATATACACTTTCACATT
1 CACATATATACACTTTCACATT
45066800 TATTCAAATA
Statistics
Matches: 158, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 113 0.72
49 45 0.28
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:45066696 original size:96 final size:94
Alignment explanation
Indices: 45066588--45066799 Score: 379
Period size: 96 Copynumber: 2.2 Consensus size: 94
45066578 ACATGGATTA
*
45066588 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
45066653 CATTCATCACATCGGCCATTAGGCCTTAT
66 CATTCATCACATCGGCCATTAGGCCTTAT
* *
45066682 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
1 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
45066747 CACATTCATCACATCGGCCATTAGGCCTTAT
64 CACATTCATCACATCGGCCATTAGGCCTTAT
45066778 CACATATATACACTTTCACATT
1 CACATATATACACTTTCACATT
45066800 TATTCAAATA
Statistics
Matches: 113, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
94 22 0.19
96 91 0.81
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTAT
Found at i:45066787 original size:256 final size:253
Alignment explanation
Indices: 45066335--45066799 Score: 831
Period size: 256 Copynumber: 1.8 Consensus size: 253
45066325 TCGGCCCTAT
* *
45066335 CACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
*
45066400 CATCATCACATCGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
66 CATCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
*
45066465 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATA
131 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
45066530 TACACTTTCACATTCATCACATCGGCATAGCTTATCAAAAACCACATTACATGGATTA
196 TACACTTTCACATTCATCACATCGGCATAGCTTATCAAAAACCACATTACATGGATTA
*
45066588 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
* *
45066653 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
66 CA-TCATCACATCGGCCATTAGACCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
*
45066718 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
128 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
45066783 ATATACACTTTCACATT
193 ATATACACTTTCACATT
45066800 TATTCAAATA
Statistics
Matches: 201, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
253 64 0.32
254 27 0.13
256 110 0.55
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (253 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
CATCATCACATCGGCCATTAGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TACACTTTCACATTCATCACATCGGCATAGCTTATCAAAAACCACATTACATGGATTA
Found at i:45067846 original size:47 final size:47
Alignment explanation
Indices: 45067346--45067843 Score: 836
Period size: 47 Copynumber: 10.6 Consensus size: 47
45067336 CCCTTCGGGA
* * * * * *
45067346 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45067393 CCTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45067439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45067486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45067533 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45067580 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45067627 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45067674 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45067721 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45067770 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45067817 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45067844 TATTCAAATA
Statistics
Matches: 430, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 44 0.10
47 341 0.79
49 45 0.10
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45071197 original size:27 final size:27
Alignment explanation
Indices: 45071167--45071231 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
45071157 GGGCATATTC
*
45071167 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACA
* * *
45071194 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCATTTTACCATACAAGGGCTTTACA
*
45071221 GTCTTTTTACC
1 GTCATTTTACC
45071232 TATTTGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:45071315 original size:27 final size:27
Alignment explanation
Indices: 45071285--45071370 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
45071275 GTAAATCTAC
45071285 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
45071312 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
45071338 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
45071368 AAA
1 AAA
45071371 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:45071388 original size:27 final size:27
Alignment explanation
Indices: 45071348--45071580 Score: 179
Period size: 27 Copynumber: 8.7 Consensus size: 27
45071338 AGAAAGTCAA
** *
45071348 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
45071375 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
45071401 AGGGTATTTCGGTAATTTCACAAAGC-AG
1 -GGGTATTTTGGTAATTTTACAAA-CTAG
* *
45071429 TGGTATTTTGGTAACTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
45071456 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
45071483 GGGTATTTTAGCAATTTTACAGACCA-
1 GGGTATTTTGGTAATTTTACAAACTAG
* * ** *
45071509 AGGTATGTTGGTAATTTTACTGA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
45071535 AGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
45071563 GAGTATTTTTGTAATTTT
1 GGGTATTTTGGTAATTTT
45071581 GTAAATCGAG
Statistics
Matches: 164, Mismatches: 34, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
26 22 0.13
27 141 0.86
28 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:45071390 original size:56 final size:54
Alignment explanation
Indices: 45071282--45071418 Score: 141
Period size: 56 Copynumber: 2.5 Consensus size: 54
45071272 TTGGTAAATC
* *
45071282 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* * ** * *
45071337 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTT
** *
45071392 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
45071419 CACAAAGCAG
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
54 18 0.26
55 14 0.21
56 36 0.53
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:45071604 original size:27 final size:27
Alignment explanation
Indices: 45071573--45071862 Score: 409
Period size: 27 Copynumber: 10.7 Consensus size: 27
45071563 GAGTATTTTT
* *
45071573 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
45071600 ATAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
45071627 GTAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
45071654 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
45071681 GTAATTCTTTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
45071708 GTAATTCTTTAAATCAAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
45071735 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
45071762 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
45071789 GTAATTCTATAAATCTAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
45071816 GTAATTCTATAAATCGAGGTTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
45071843 GTAATTCTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGG
45071863 CATTTCAGTA
Statistics
Matches: 238, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 238 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:45073095 original size:53 final size:53
Alignment explanation
Indices: 45073026--45073184 Score: 185
Period size: 53 Copynumber: 3.0 Consensus size: 53
45073016 TTTTCCTTTT
* * *
45073026 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * *
45073079 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTA
* * * * *
45073132 TAGTAACTCATCAATTCCATGTCTTGACATGGTTTTACATGATTTCCTTGCCT
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCT
45073185 GCCATGCCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 45 0.51
54 1 0.01
55 38 0.43
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:45073491 original size:44 final size:44
Alignment explanation
Indices: 45073408--45073494 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
45073398 GTATCCTTAA
* * *
45073408 CCATCAATTCCTCCTTAAATGCCATGTTATGAACTTGGACTTTT
1 CCATCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTT
* * *
45073452 CCATCAATTCTTCCTTAATTTCCATGGTA-CAACCATGGACTTT
1 CCATCAATTCCTCCTTAAATGCCATGGTATCAA-CATGGACTTT
45073495 GAGATATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.25, C:0.26, G:0.10, T:0.38
Consensus pattern (44 bp):
CCATCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTT
Found at i:45075626 original size:43 final size:43
Alignment explanation
Indices: 45075568--45075712 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 43
45075558 AATGCCGACC
* *
45075568 TCCCGGACATGGTCTTATATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTATG
* * * *
45075611 TCCCAGACAGGGTCTTACATGGAA-TCAGATA-CGATGCCAATG
1 TCCCAGACATGGTCTTATATGTAATTCA-ATATCGATGCCTATG
* * *
45075653 TCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTG
1 TCCCAGACATGGTCTTATATGT-AAT-TCAATATCGATGCCTATG
*
45075696 TCCCAGACACGGTCTTA
1 TCCCAGACATGGTCTTA
45075713 CACGATATCT
Statistics
Matches: 83, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
42 31 0.37
43 50 0.60
45 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTATG
Found at i:45075655 original size:42 final size:43
Alignment explanation
Indices: 45075568--45075669 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
45075558 AATGCCGACC
* * * **
45075568 TCCCGGACATGGTCTTATATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACATGGTCTTACATGGAATTCAATATCGATGCCAATG
*
45075611 TCCCAGACAGGGTCTTACATGGAA-TCAGATA-CGATGCCAATG
1 TCCCAGACATGGTCTTACATGGAATTCA-ATATCGATGCCAATG
45075653 TCCCAGACATGGTCTTA
1 TCCCAGACATGGTCTTA
45075670 TACGTAAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 28 0.55
43 23 0.45
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGGAATTCAATATCGATGCCAATG
Found at i:45078849 original size:40 final size:40
Alignment explanation
Indices: 45078780--45078984 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
45078770 AACCCAAGTA
* *
45078780 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45078819 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45078859 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45078898 CCTTCAGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
45078938 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45078978 CCTTCGG
1 CCTTCGG
45078985 ATCTTGTCCG
Statistics
Matches: 154, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 52 0.34
40 102 0.66
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45078911 original size:79 final size:79
Alignment explanation
Indices: 45078780--45078982 Score: 318
Period size: 79 Copynumber: 2.6 Consensus size: 79
45078770 AACCCAAGTA
* * * *
45078780 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAA
45078844 TAACTCGCACAAATG
65 TAACTCGCACAAATG
45078859 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAAT
1 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAAT
45078924 AACTCGCACAAATG
66 AACTCGCACAAATG
* * *
45078938 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCATAAATGCCTTC
1 CCTTCG-GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
45078983 GGATCTTGTC
Statistics
Matches: 115, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
78 7 0.06
79 73 0.63
80 35 0.30
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAAT
AACTCGCACAAATG
Found at i:45087553 original size:47 final size:47
Alignment explanation
Indices: 45087501--45087906 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
45087491 GATAATTGTG
* * *
45087501 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45087548 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45087595 ATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45087644 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
45087691 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45087740 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45087787 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
45087834 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45087881 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
45087907 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 23, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
47 241 0.73
49 91 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:45087608 original size:96 final size:96
Alignment explanation
Indices: 45087501--45087906 Score: 671
Period size: 96 Copynumber: 4.3 Consensus size: 96
45087491 GATAATTGTG
*
45087501 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
45087564 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
*
45087595 ATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
45087660 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
45087691 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
45087756 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
*
45087787 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
45087850 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
45087881 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
45087907 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
94 99 0.34
95 3 0.01
96 191 0.65
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:45087650 original size:143 final size:143
Alignment explanation
Indices: 45087501--45087906 Score: 640
Period size: 143 Copynumber: 2.9 Consensus size: 143
45087491 GATAATTGTG
* * *
45087501 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
45087566 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATG
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATA
45087631 GCCGATGTGATGA
131 GCCGATGTGATGA
*
45087644 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
* *
45087709 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAA
45087772 TAGCCGATGTGATGA
129 TAGCCGATGTGATGA
*
45087787 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
45087852 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
45087907 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
141 50 0.21
142 1 0.00
143 146 0.60
145 46 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATA
GCCGATGTGATGA
Found at i:45090099 original size:55 final size:54
Alignment explanation
Indices: 45090004--45090153 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
45089994 CTACTTTGTT
* ** * *
45090004 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
45090058 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
45090113 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
45090154 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:45090116 original size:27 final size:27
Alignment explanation
Indices: 45089976--45090153 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
45089966 TAAATTGTAC
45089976 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
45090003 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
45090029 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
45090057 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
45090085 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
45090112 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
45090139 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45090154 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:45090117 original size:82 final size:81
Alignment explanation
Indices: 45089977--45090132 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
45089967 AAATTGTACA
* * * *
45089977 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
45090042 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
45090058 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
45090121 TGTGCGAGTTGA
63 TGTGCGAATTGA
45090133 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:45104919 original size:47 final size:46
Alignment explanation
Indices: 45104764--45104936 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 46
45104754 TTGAGATCCA
*
45104764 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCT-CG
* *
45104810 AACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGCATCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC-TC-G
*
45104857 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCG
* *
45104903 AGCTCGTTGAGTTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAG-TTGAGTCCGAGTTCACTTATGG
45104937 CGGGTTACAT
Statistics
Matches: 105, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 2 0.02
46 34 0.32
47 45 0.43
48 3 0.03
50 4 0.04
51 7 0.07
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCG
Found at i:45119806 original size:29 final size:31
Alignment explanation
Indices: 45119774--45119831 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
45119764 AGATGAAACA
* *
45119774 AGCTCAATGAGCT-GAATTGAGCT-GGATAG
1 AGCTCAAGGAGCTGGAAATGAGCTAGGATAG
*
45119803 AGCTCGAGGAGCTGGAAATGAGCTAGGAT
1 AGCTCAAGGAGCTGGAAATGAGCTAGGAT
45119832 CAGCTTGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.46
30 9 0.38
31 4 0.17
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (31 bp):
AGCTCAAGGAGCTGGAAATGAGCTAGGATAG
Found at i:45122556 original size:5 final size:5
Alignment explanation
Indices: 45122542--45122641 Score: 50
Period size: 5 Copynumber: 20.2 Consensus size: 5
45122532 TATATAAAAC
* * * * *
45122542 AATAT AATAT CATAT AACAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
* *
45122590 AATA- AATGAT AATA- AATAT AATAT GATGGAT AATAT AAAAAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT AAT--AT AATAT -AATAT AATAT
45122637 -ATAT A
1 AATAT A
45122642 TGTCATTTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
3 2 0.03
4 14 0.19
5 43 0.60
6 9 0.12
7 4 0.06
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (5 bp):
AATAT
Found at i:45124270 original size:88 final size:88
Alignment explanation
Indices: 45124121--45124330 Score: 350
Period size: 88 Copynumber: 2.4 Consensus size: 88
45124111 CTTTGATCGG
* * * *
45124121 CTCTCCGTCAAACACAAAGATACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAG-C
1 CTCTCCGTCGAACATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGTC
45124185 TAAATCAGCTATGTCTTCGATCTA
66 -AAATCAGCTATGTCTTCGATCTA
45124209 CTCTCCGTCGAACATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGTC
1 CTCTCCGTCGAACATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGTC
*
45124274 AAATCAGCTATGTCTTCGATCTG
66 AAATCAGCTATGTCTTCGATCTA
*
45124297 CTCTCCGTCGAACATAGAGATGTCAAATCATCTT
1 CTCTCCGTCGAACATAGAGATGCCAAATCATCTT
45124331 GGATGTGCCT
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
88 114 0.99
89 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (88 bp):
CTCTCCGTCGAACATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGTC
AAATCAGCTATGTCTTCGATCTA
Found at i:45124443 original size:45 final size:45
Alignment explanation
Indices: 45124364--45124711 Score: 331
Period size: 45 Copynumber: 7.9 Consensus size: 45
45124354 ATCTGCTACG
* * * * * *
45124364 TCTTCGATCTGCTCCCCGTCGAATATAGAAAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* *
45124409 TCTTGGATCTACTCTCCATCCATTACAGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* *
45124454 TCTTGGATTTACTCCCCGTCCATTACGGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* *
45124499 TCTTGGATCTACTCCTCGTCCATTTCAGAGAGATAAGATCTGTCA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* * *
45124544 TCTTGGATCTGC-CCCCTGTCCATTACAGAGAGATAAGATCCGCCA
1 TCTTGGATCTACTCCCC-GTCCATTACAGAGAGATAAGATCTGTCA
* * * *
45124589 TCTTGGATCT--GCCCCG---A-T---GA-AGGTCAGATCTGTTA
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* * * * * * * *
45124624 TGTCTTCGATCTGCTTCCTGTCGAATACAGAGAGATAAGATCTATTA
1 --TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
* *
45124671 TCTTGGATCTGCTCCCCGTCCATTTCAGAGAGATAAGATCT
1 TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCT
45124712 ACTATTTTTG
Statistics
Matches: 250, Mismatches: 39, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
35 10 0.04
36 2 0.01
37 9 0.04
39 4 0.02
40 1 0.00
42 1 0.00
43 2 0.01
44 7 0.03
45 200 0.80
46 2 0.01
47 12 0.05
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (45 bp):
TCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCA
Found at i:45124777 original size:45 final size:45
Alignment explanation
Indices: 45124626--45124765 Score: 165
Period size: 45 Copynumber: 3.1 Consensus size: 45
45124616 ATCTGTTATG
*
45124626 TCTTCGATCTGCTT-CCTGTCGAATACAGAGAGATAAGATCTATTA
1 TCTTCGATCTG-TTCCCTGTCGAATACAGAGAGATAAGATCTACTA
* * * * * *
45124671 TCTTGGATCTGCTCCCCGTCCATTTCAGAGAGATAAGATCTACTA
1 TCTTCGATCTGTTCCCTGTCGAATACAGAGAGATAAGATCTACTA
* * * *
45124716 TTTTTGATCTGTTCCCTGTCGAATACAGAGAAATAAGATCTGCTA
1 TCTTCGATCTGTTCCCTGTCGAATACAGAGAGATAAGATCTACTA
45124761 TCTTC
1 TCTTC
45124766 AACTTGTTCC
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 1 0.01
45 75 0.99
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (45 bp):
TCTTCGATCTGTTCCCTGTCGAATACAGAGAGATAAGATCTACTA
Found at i:45127851 original size:40 final size:40
Alignment explanation
Indices: 45127767--45127991 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
45127757 TTGAATGATG
* * * *
45127767 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
45127807 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45127847 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45127886 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45127926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45127967 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45127992 AATGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 121 0.74
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45128013 original size:119 final size:119
Alignment explanation
Indices: 45127767--45128024 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
45127757 TTGAATGATG
* *
45127767 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
45127832 GTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
45127886 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
45127949 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-GAGCTATA
64 TTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
45128006 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45128025 TACGTGATTT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:45135288 original size:5 final size:5
Alignment explanation
Indices: 45135274--45135375 Score: 52
Period size: 5 Copynumber: 20.2 Consensus size: 5
45135264 TATATAAAAC
* * * * *
45135274 AATAT AATAT CATAT AACAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
* *
45135322 AATA- AATGAT AATA- AATAT AATAT GATGGAT AATAT AAAAAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT AAT--AT AATAT -AATAT AATAT
45135369 ATATAT A
1 A-ATAT A
45135376 TGTCATTTTA
Statistics
Matches: 74, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
3 2 0.03
4 10 0.14
5 44 0.59
6 14 0.19
7 4 0.05
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (5 bp):
AATAT
Found at i:45138515 original size:18 final size:20
Alignment explanation
Indices: 45138479--45138525 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
45138469 AGTTGTAAGT
45138479 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
45138499 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
45138518 ATGATATA
1 AT-ATATA
45138526 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:45139049 original size:50 final size:50
Alignment explanation
Indices: 45138873--45139117 Score: 249
Period size: 50 Copynumber: 4.9 Consensus size: 50
45138863 ATCCGTTGTG
* *
45138873 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
* * * * * * * * * *
45138923 GGTCGCATTTGTAGTACTAAGTGCAGGCTACTATGCGAACCCG-TTAACTT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TA
* * * * *
45138973 TGATCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
*
45139024 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
* * * * * *
45139074 GGTCACATGTGTAGTACTAAGTGTATGCTACTATGCGTACCAGA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
45139118 GAGCTTCGGT
Statistics
Matches: 153, Mismatches: 39, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
49 3 0.02
50 115 0.75
51 34 0.22
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
Found at i:45139050 original size:101 final size:101
Alignment explanation
Indices: 45138875--45139056 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 101
45138865 CCGTTGTGAG
* * * * * *
45138875 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATTTGTAGTAC
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGATGGATAAGTCACATGTGTAGTAC
45138940 TAAGTGCAGGCTACTATGCGAACCCGTTAACTTTGA
66 TAAGTGCAGGCTACTATGCGAACCCGTTAACTTTGA
* *
45138976 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTA-TCAGATGGTTAAGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACT-AGATGGATAAGTCACATGTGTAGTA
45139040 CTAAGTGCAGGCTACTA
65 CTAAGTGCAGGCTACTA
45139057 CATGTACCAG
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 1 0.01
101 71 0.99
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGAACCCGTTAACTTTGA
Found at i:45142914 original size:33 final size:33
Alignment explanation
Indices: 45142866--45142935 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
45142856 ACCCAACCTA
* *
45142866 AAACCAAACATTTTTATGCCTTAAAATGCATTC
1 AAACCAAAAAATTTTATGCCTTAAAATGCATTC
45142899 AAACCAAAAAATTTTATGCCTTAAAATGCATTC
1 AAACCAAAAAATTTTATGCCTTAAAATGCATTC
45142932 AAAC
1 AAAC
45142936 AAGTTCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (33 bp):
AAACCAAAAAATTTTATGCCTTAAAATGCATTC
Found at i:45157635 original size:55 final size:55
Alignment explanation
Indices: 45157515--45157653 Score: 154
Period size: 55 Copynumber: 2.5 Consensus size: 55
45157505 CGACATGGCC
* * **
45157515 GTGGGTGAACCTGCCAAAACAACGCGGGCGTGCGACACGCCCATGCCTGGAAACT
1 GTGGGTGAACCTGCCAAAACAACACGGGCGTGCAACACGCCCATGCCAAGAAACT
* ** * ** *
45157570 GTAGCCGAACCTGTCAAATTAACAC-GGCTGTGCAACACGCCCATGCCAAGCAACT
1 GTGGGTGAACCTGCCAAAACAACACGGGC-GTGCAACACGCCCATGCCAAGAAACT
*
45157625 GTGGGTGAACCTGCCAAAACAACATGGGC
1 GTGGGTGAACCTGCCAAAACAACACGGGC
45157654 TTGGACCTTC
Statistics
Matches: 64, Mismatches: 18, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
54 3 0.05
55 58 0.91
56 3 0.05
ACGTcount: A:0.29, C:0.30, G:0.27, T:0.14
Consensus pattern (55 bp):
GTGGGTGAACCTGCCAAAACAACACGGGCGTGCAACACGCCCATGCCAAGAAACT
Found at i:45157675 original size:20 final size:20
Alignment explanation
Indices: 45157650--45157693 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
45157640 AAAACAACAT
45157650 GGGCTTGGACCTTCATACAC
1 GGGCTTGGACCTTCATACAC
*
45157670 GGGCTTGGACCTTCATATAC
1 GGGCTTGGACCTTCATACAC
45157690 GGGC
1 GGGC
45157694 GTGGGAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (20 bp):
GGGCTTGGACCTTCATACAC
Found at i:45168012 original size:27 final size:27
Alignment explanation
Indices: 45167982--45168159 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45167972 ATATTGAGTC
* * * *
45167982 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
45168009 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45168036 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
45168064 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
45168091 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
45168118 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45168145 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45168160 GTACAATTCA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:45168121 original size:82 final size:81
Alignment explanation
Indices: 45168003--45168158 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45167993 TGCTATATAA
* *
45168003 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45168068 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45168085 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45168149 CACTTAGTGC
65 CACTTAGTGC
45168159 TGTACAATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45168171 original size:82 final size:83
Alignment explanation
Indices: 45167982--45168171 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 83
45167972 ATATTGAGTC
* * * * *
45167982 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
45168046 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
45168064 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
45168125 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
45168145 CGCACACTTAGTGCTGTACAATTCAAT
1 CGCACACTTAGTGCTGTACAATTCAAT
45168172 CCCGCGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 69 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Done.