Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 137 of 373
Found at i:45170341 original size:21 final size:21
Alignment explanation
Indices: 45170315--45170360 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
45170305 CATGAGCGAG
*
45170315 CACATGGGCGTGT-GGAGTAGC
1 CACATGGGCATGTGGGA-TAGC
45170336 CACATGGGCATGTGGGATAGC
1 CACATGGGCATGTGGGATAGC
45170357 CACA
1 CACA
45170361 CGACCATGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.24, C:0.22, G:0.37, T:0.17
Consensus pattern (21 bp):
CACATGGGCATGTGGGATAGC
Found at i:45176485 original size:35 final size:36
Alignment explanation
Indices: 45176445--45176515 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
45176435 TATCTACAGT
45176445 AAACTTATG-TTTTTTAATTTTATATAGATTATAGA
1 AAACTTATGTTTTTTTAATTTTATATAGATTATAGA
45176480 AAACTTATGTTTTTTTAATTTTATATAGATTATAGA
1 AAACTTATGTTTTTTTAATTTTATATAGATTATAGA
45176516 TTATATATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 9 0.26
36 26 0.74
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (36 bp):
AAACTTATGTTTTTTTAATTTTATATAGATTATAGA
Found at i:45182283 original size:45 final size:44
Alignment explanation
Indices: 45182175--45182288 Score: 115
Period size: 45 Copynumber: 2.5 Consensus size: 44
45182165 GATGAGTGCT
* *
45182175 AGTGTAAGATTTGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGA-ATGCCTGGGACATGCATCGGCCTCGAGA-ATAAGCC
* ** *
45182221 AGTGTAAGAATGTCTGGGACATGCATCGG-CTACGAG-ATGTGTC
1 AGTGTAAGAATGCCTGGGACATGCATCGGCCT-CGAGAATAAGCC
45182264 AGTGTAAGACCATGCCTGGGACATG
1 AGTGTAAGA--ATGCCTGGGACATG
45182289 GCATTGGCAC
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
43 13 0.22
44 2 0.03
45 36 0.60
46 9 0.15
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGAATGCCTGGGACATGCATCGGCCTCGAGAATAAGCC
Found at i:45183698 original size:747 final size:747
Alignment explanation
Indices: 45182265--45185163 Score: 5449
Period size: 747 Copynumber: 3.9 Consensus size: 747
45182255 AGATGTGTCA
* * *
45182265 GTGTAAGACCATGCCTGGGACATGGCATTGGCACCTTACCTCATGTTTGAGGCTTAATGAATATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
45182330 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
66 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
*
45182395 GTGTTGCGAGTAGTACTGGTACCTGTTTGGCATATATAGAATATGAGCCCAATTTTATGATATAC
131 GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
*
45182460 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTTA
196 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
45182525 TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
261 TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
* *
45182590 CTCATTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATAG
326 CTCCTTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
*
45182655 GTCACACTATCAATCGAAGCATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
391 ATCACACTATCAATCGAAGCATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
*
45182720 GAACTAGACTTCTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
456 GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
* *
45182785 CATTTTGTATTAAGCTTCGAATGATGGTTAATATTTATCTTGATTTATATACAAAGATGTTATCT
521 CATTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACCT
45182850 TCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
586 TCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
*
45182915 GTCTTGTAAGACATGTTTGGCACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
651 GTCTTGTAAGACATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
*
45182980 GACATAACATCGACACAGACATGCTAGAGCTT
716 GACATAGCATCGACACAGACATGCTAGAGCTT
*
45183012 GTGTAAGACCATGTTTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
45183077 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
66 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
45183142 GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
131 GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
45183207 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
196 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
*
45183272 TGAATGGTAAAGTTATGTTGTAAATTTATTTAAGTGAAACTTACTAAGCCTTATGCTTACTCCCT
261 TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
*
45183337 CTCCTTTTCATTTTCTTATAATGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
326 CTCCTTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
*
45183402 ATCACACTATCAATCGAAGCATTCGGTATAGTTTGACTTATATTTTTGAATATGGCATGTATGGG
391 ATCACACTATCAATCGAAGCATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
*
45183467 GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTATTGACTTGGGATAAATCTCT
456 GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
45183532 CATTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACCT
521 CATTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACCT
45183597 TCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
586 TCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
45183662 GTCTTGTAAGACATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
651 GTCTTGTAAGACATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
45183727 GACATAGCATCGACACAGACATGCTAGAGCTT
716 GACATAGCATCGACACAGACATGCTAGAGCTT
45183759 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
45183824 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
66 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
45183889 GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
131 GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
45183954 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
196 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
45184019 TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
261 TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
45184084 CTCCTTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
326 CTCCTTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
*
45184149 ATCACACTATCAATCGAAGTATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
391 ATCACACTATCAATCGAAGCATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
45184214 GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
456 GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
45184279 CATTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACCT
521 CATTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACCT
*
45184344 TCATAGATGAGTAAAATGCATACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
586 TCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
45184409 GTCTTGTAAGACATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
651 GTCTTGTAAGACATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
45184474 GACATAGCATCGACACAGACATGCTAGAGCTT
716 GACATAGCATCGACACAGACATGCTAGAGCTT
*
45184506 ATGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
*
45184571 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACAAGGAAAGTATAACT
66 TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
* *
45184636 ATGTTACGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
131 GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
* *
45184701 GATGTGTACTAAATATTAATGAGTAAGTTTTATTTATGCCCAATTGTATATTACGAGCTTGTTGA
196 GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
* *
45184766 TGAATGGTGAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCTTTATGCTTACTCCCT
261 TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
* * * * *
45184831 CTCCTTTTCATTTTCTTATCGTGCCGCCTATCTAGCTCAAAGATCAACGAAAGTCAGAGATATC-
326 CTCCTTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
* *
45184895 ATCACACTATCAATCGAAGCATACGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATAGG
391 ATCACACTATCAATCGAAGCATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
*
45184960 GAACTAGACTTGCGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
456 GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
45185025 CATTTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACC
521 CA-TTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACC
*
45185090 TTCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATGAGAT
585 TTCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGAT
45185155 TGTCTTGTA
650 TGTCTTGTA
45185164 TTAGCTTTGT
Statistics
Matches: 2107, Mismatches: 44, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
746 128 0.06
747 1979 0.94
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (747 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCACCTTACCCCATGTTTGAGGCTTAATGAATATT
TGATAGTGTTCCAAATGGTTCAACGGTGAAAGTCATGATTTCAAGTTAACGAGGAAAGTATAACT
GTGTTGCGAGTAGTACTGGTACCTGTTTGGTATATATAGAATATGAGCCCAATTTTATGATATAC
GATGTGTACTGAATATTAATGAGTAAGTTTTACTTATGCCCAATTGTATATTACGAGCTTGTTGA
TGAATGGTAAAGTTATGTTGTAAATTTATTTATGTGAAACTTACTAAGCCTTATGCTTACTCCCT
CTCCTTTTCATTTTCTTATAGTGCCACCTATCTAGCTCAAGGATCAATGGAAGTCAGAGATATCG
ATCACACTATCAATCGAAGCATTCGGTATAGTTTGATTTATATTTTTGAATATGGCATGTATGGG
GAACTAGACTTGTGTTTTGTGTCATTATCAATTTGGCCAAATGTGTTGACTTGGGATAAATCTCT
CATTTTGTATTAAGCTTCGAATGATGGTTAATATTCATCTTGATTTATATACAAAGATGTTACCT
TCATAGATGAGTAAAATGCACACATGGAATGTTGTTTATTGTGGCTAAATTGGTTGCATAAGATT
GTCTTGTAAGACATGTTTGGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTGA
GACATAGCATCGACACAGACATGCTAGAGCTT
Found at i:45194539 original size:43 final size:43
Alignment explanation
Indices: 45194366--45194539 Score: 149
Period size: 43 Copynumber: 4.0 Consensus size: 43
45194356 CATAGGATTC
* * *
45194366 TGATATGTGATTTCGTGTAAGACCACGTTTGGGACGTTGGCAT
1 TGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * ** * *
45194409 CGAT-TTGAGATTTACGTGTAAGACCAATTCTGGGACATCGGCAT
1 TGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
45194453 CG-TATTTGATTTCGGGTAAGACC-CTATCTGGGACAG-TGGCAT
1 TGATATTTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* *
45194495 TGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGACAT
1 TGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
45194538 TG
1 TG
45194540 TACGAGCTTT
Statistics
Matches: 101, Mismatches: 22, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
42 28 0.28
43 41 0.41
44 32 0.32
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:45197473 original size:43 final size:43
Alignment explanation
Indices: 45197425--45197506 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
45197415 ATCTCTCTCA
*
45197425 AGACTAATAACGTCTAACCCTAGGTTGATTAATTGAAATATTG
1 AGACTAATAACATCTAACCCTAGGTTGATTAATTGAAATATTG
45197468 AGACTAATAACATCTAACCCTAGGTTGATTAATTGAAAT
1 AGACTAATAACATCTAACCCTAGGTTGATTAATTGAAAT
45197507 CTTTCTAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (43 bp):
AGACTAATAACATCTAACCCTAGGTTGATTAATTGAAATATTG
Found at i:45202122 original size:64 final size:64
Alignment explanation
Indices: 45202042--45202213 Score: 175
Period size: 67 Copynumber: 2.7 Consensus size: 64
45202032 AGACATTATG
* *
45202042 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAACAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAA
** * * * * * *
45202106 ATGTAGCTAGGTCGCATACGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAACAGAGCTACGAGAT
45202171 AA
63 AA
* * * * *
45202173 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
45202214 GTACAAGAGA
Statistics
Matches: 84, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
63 9 0.11
64 20 0.24
65 8 0.10
66 16 0.19
67 31 0.37
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAA
Found at i:45206568 original size:64 final size:64
Alignment explanation
Indices: 45206487--45206671 Score: 194
Period size: 64 Copynumber: 2.8 Consensus size: 64
45206477 AGACATTATG
* * *
45206487 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAAACAAGAGAGCTACGAGATAA
* * * * * *
45206551 ATGTAGCTAGGTCGCATGCGTGGTTCCACGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAAACAAGAGAGCTACGAGAT
45206616 AA
63 AA
* * **
45206618 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTACACCATGTGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTG-TACACCATGTAAACAAGAGAGC
45206672 CGAACTATAT
Statistics
Matches: 98, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
63 1 0.01
64 44 0.45
66 21 0.21
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAAACAAGAGAGCTACGAGATAA
Found at i:45211002 original size:55 final size:54
Alignment explanation
Indices: 45210915--45211169 Score: 226
Period size: 55 Copynumber: 4.8 Consensus size: 54
45210905 ATTAGGGTTT
* *
45210915 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
45210970 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
45211025 AA--AAGTCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 AAGGAA--ACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
45211078 AAGGATACCATGTAAGACCATGTCAAGACATGG-AAATGGTAAGTTTC-AA---
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* ** * *
45211127 AAGGATACCACATAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
45211170 GTACCCGCGT
Statistics
Matches: 167, Mismatches: 23, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
49 36 0.22
50 2 0.01
52 3 0.02
53 44 0.26
54 11 0.07
55 71 0.43
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:45211121 original size:108 final size:110
Alignment explanation
Indices: 45210922--45211122 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
45210912 TTTAAGGATA
*
45210922 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
45210987 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAAGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAAGTC
* *
45211032 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
45211094 ACCATGTCAAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
45211123 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAAGTC
Found at i:45211275 original size:23 final size:24
Alignment explanation
Indices: 45211238--45211282 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
45211228 AAGGTAAGGT
**
45211238 AAGGTAAGATGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
45211261 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
45211283 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:45222315 original size:43 final size:42
Alignment explanation
Indices: 45222219--45222315 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
45222209 AATTTGAGAT
*
45222219 TTACATGTAAGACCATGTATGGGACATCGACATCATATTTGA
1 TTACATGTAAGACCATGTATGGGACAGCGACATCATATTTGA
* * * * * * * *
45222261 TTTCGTATAAGACCCTGTTTGGGATAGGGGCATCGATATTTGA
1 TTACATGTAAGACCATGTATGGGACAGCGACATC-ATATTTGA
45222304 TTACATGTAAGA
1 TTACATGTAAGA
45222316 TCACGTCTGG
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
42 25 0.60
43 17 0.40
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
TTACATGTAAGACCATGTATGGGACAGCGACATCATATTTGA
Found at i:45232917 original size:45 final size:45
Alignment explanation
Indices: 45232807--45232923 Score: 180
Period size: 45 Copynumber: 2.6 Consensus size: 45
45232797 CCCAGACATA
* * * *
45232807 GTCTTACACGTAACCACATAGATCGATGCCAACGTCCTAGACGTG
1 GTCTTACACGAAAACACATATATCGATGCCAAAGTCCTAGACGTG
*
45232852 GTCTTACACAAAAACACATATATCGATGCCAAAGTCCTAGACGTG
1 GTCTTACACGAAAACACATATATCGATGCCAAAGTCCTAGACGTG
*
45232897 GTCTTACACGAAAACACATATCTCGAT
1 GTCTTACACGAAAACACATATATCGAT
45232924 CCTATGGTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (45 bp):
GTCTTACACGAAAACACATATATCGATGCCAAAGTCCTAGACGTG
Found at i:45234169 original size:17 final size:17
Alignment explanation
Indices: 45234144--45234177 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
45234134 CACATATCCC
*
45234144 TAACTTATTCTCTCATA
1 TAACATATTCTCTCATA
*
45234161 TAACATATTTTCTCATA
1 TAACATATTCTCTCATA
45234178 CTTATAACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (17 bp):
TAACATATTCTCTCATA
Found at i:45238024 original size:198 final size:194
Alignment explanation
Indices: 45237659--45238054 Score: 639
Period size: 198 Copynumber: 2.0 Consensus size: 194
45237649 AGAATCTTAG
* *
45237659 TCTTTACTAATATTTCTAACCTTTCTTTGGGTACAAGACCAAACGTTTATGCCATAAGTAAGCAA
1 TCTTTACTAATATTTCTAACCTTTCTTTGGGTACAAGACCAAACATTTATGCCACAAGTAAGCAA
45237724 AATTTTCATTTAGCATACTACGCTAAATTCCAACATGATACGATCAACTAAGGATTCCACAAAGA
66 AATTTTCATTTAGCATACTACGCTAAATTCCAACATGATACGATCAACTAAGGATTCCACAAAGA
* * *
45237789 CATTATCAAGTTTCAATTTATATAAGCCATCAATAAGACTTCCTGAACCTAATAAAAGTATTAT
131 CATTATCAAGTTTCAATTTATATAAACCATCAATAAGACTTCCTGAACCTAAGAAAACTATTAT
* *
45237853 TCTTTACTAATATTTTTAACCTTTCTTTGGGTACAAGACCCAAACATTTGTGCCACAAGTAAGCA
1 TCTTTACTAATATTTCTAACCTTTCTTTGGGTACAAGA-CCAAACATTTATGCCACAAGTAAGCA
* * * * * *
45237918 GAATTTTCATTTTGCATACTATGCTTAATTCCAACATGATATGATCAACAAATAATGATTCCACA
65 AAATTTTCATTTAGCATACTACGCTAAATTCCAACATGATACGATCAAC---TAAGGATTCCACA
45237983 AAGACATTATCAAGTTTCAATTTATATAAACCATCAATAAGACTTCCTGAACCTAAGAAAACTAT
127 AAGACATTATCAAGTTTCAATTTATATAAACCATCAATAAGACTTCCTGAACCTAAGAAAACTAT
45238048 TAT
192 TAT
45238051 TCTT
1 TCTT
45238055 AAATAAACTA
Statistics
Matches: 185, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
194 37 0.20
195 67 0.36
198 81 0.44
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (194 bp):
TCTTTACTAATATTTCTAACCTTTCTTTGGGTACAAGACCAAACATTTATGCCACAAGTAAGCAA
AATTTTCATTTAGCATACTACGCTAAATTCCAACATGATACGATCAACTAAGGATTCCACAAAGA
CATTATCAAGTTTCAATTTATATAAACCATCAATAAGACTTCCTGAACCTAAGAAAACTATTAT
Found at i:45251445 original size:37 final size:37
Alignment explanation
Indices: 45251395--45251471 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
45251385 TCATTATTAG
45251395 TACAATTGAAATGCATGTTAAAAGTAAACCAGAAGTT
1 TACAATTGAAATGCATGTTAAAAGTAAACCAGAAGTT
45251432 TACAATTGAAATGCATGTTAAAAGTAAACCAGAAGTT
1 TACAATTGAAATGCATGTTAAAAGTAAACCAGAAGTT
45251469 TAC
1 TAC
45251472 TTATACAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (37 bp):
TACAATTGAAATGCATGTTAAAAGTAAACCAGAAGTT
Found at i:45258950 original size:19 final size:21
Alignment explanation
Indices: 45258905--45258944 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45258895 GATAAAATGT
*
45258905 ATAA-TTTATATATTTTTTAA
1 ATAATTTTATATATTTTATAA
45258925 ATAATTTTATA-ATTTTATAA
1 ATAATTTTATATATTTTATAA
45258945 TTATTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATAATTTTATATATTTTATAA
Found at i:45259023 original size:15 final size:15
Alignment explanation
Indices: 45259003--45259034 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
45258993 CACATAAATT
45259003 ATCATGTAAATTGTC
1 ATCATGTAAATTGTC
45259018 ATCATGTAAATTGTC
1 ATCATGTAAATTGTC
45259033 AT
1 AT
45259035 GTCAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (15 bp):
ATCATGTAAATTGTC
Found at i:45264083 original size:18 final size:19
Alignment explanation
Indices: 45264050--45264085 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45264040 TTAAATTTAG
*
45264050 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
45264069 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
45264086 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:45264537 original size:68 final size:67
Alignment explanation
Indices: 45264465--45264614 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
45264455 CATCATGTGT
* * * *
45264465 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
45264527 ATGTAG
62 ATGTAG
** * *
45264533 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
45264598 AG
66 AG
45264600 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
45264615 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:45264570 original size:64 final size:64
Alignment explanation
Indices: 45264489--45264668 Score: 186
Period size: 67 Copynumber: 2.8 Consensus size: 64
45264479 AGACATTATG
* *
45264489 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
45264553 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
45264618 AA
63 AA
* * * *
45264620 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGA
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGA
45264669 CAGCCGAACT
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 21 0.22
65 8 0.09
66 16 0.17
67 31 0.33
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:45268521 original size:37 final size:34
Alignment explanation
Indices: 45268471--45268542 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
45268461 AAGTGTGCCG
* *
45268471 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
45268508 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
45268542 T
1 T
45268543 CCATAGCTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:45273567 original size:24 final size:24
Alignment explanation
Indices: 45273540--45273589 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
45273530 CATGCATCGA
*
45273540 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
45273564 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
45273588 CA
1 CA
45273590 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:45273662 original size:94 final size:94
Alignment explanation
Indices: 45273545--45273920 Score: 671
Period size: 94 Copynumber: 4.0 Consensus size: 94
45273535 ATCGACATTC
* *
45273545 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
45273610 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
45273639 AAATCTGCACACAAAGTGACATTTAATTCAGTACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
45273704 GGCAATTTACTTAATTCAAATAGCATATG
66 GGCAATTTACTTAATTCAAATAGCATATA
45273733 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
45273798 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* * *
45273827 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATATTAACTCTTTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
45273892 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
45273921 CGGTCACATT
Statistics
Matches: 270, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 270 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:45274881 original size:122 final size:122
Alignment explanation
Indices: 45274664--45274909 Score: 483
Period size: 122 Copynumber: 2.0 Consensus size: 122
45274654 TAGATGGCCG
45274664 AATATACAATATCAATTATAATATCATTTTTAATTCATTTACACACATAGTTTCATCTCATGAAC
1 AATATACAATATCAATTATAATATCATTTTTAATTCATTTACACACATAGTTTCATCTCATGAAC
*
45274729 ACTTGACTGAATTTTTCCTAAACTAGTATAGCTTCACATCTATTTATAACATCATAT
66 ACTTGACCGAATTTTTCCTAAACTAGTATAGCTTCACATCTATTTATAACATCATAT
45274786 AATATACAATATCAATTATAATATCATTTTTAATTCATTTACACACATAGTTTCATCTCATGAAC
1 AATATACAATATCAATTATAATATCATTTTTAATTCATTTACACACATAGTTTCATCTCATGAAC
45274851 ACTTGACCGAATTTTTCCTAAACTAGTATAGCTTCACATCTATTTATAACATCATAT
66 ACTTGACCGAATTTTTCCTAAACTAGTATAGCTTCACATCTATTTATAACATCATAT
45274908 AA
1 AA
45274910 ATCCACATAT
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 123 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.39
Consensus pattern (122 bp):
AATATACAATATCAATTATAATATCATTTTTAATTCATTTACACACATAGTTTCATCTCATGAAC
ACTTGACCGAATTTTTCCTAAACTAGTATAGCTTCACATCTATTTATAACATCATAT
Found at i:45280253 original size:45 final size:45
Alignment explanation
Indices: 45280195--45280303 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 45
45280185 CACTGTAATA
* * * * *
45280195 TTCAGGGAAATAAGATTCGCTAT-CTTTAGTTTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATTCGCT-TGCTTCAATCTGCTCCACAGCAAC
45280240 TTCAGGGAGATAAGAATT-G-TTGCTTCAATCTGCTCCACAGCAAC
1 TTCAGGGAGATAAG-ATTCGCTTGCTTCAATCTGCTCCACAGCAAC
*
45280284 TTCAGAGAGATAAGATTCGC
1 TTCAGGGAGATAAGATTCGC
45280304 CATGATGACT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.07
44 33 0.61
45 14 0.26
46 3 0.06
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (45 bp):
TTCAGGGAGATAAGATTCGCTTGCTTCAATCTGCTCCACAGCAAC
Found at i:45284812 original size:81 final size:82
Alignment explanation
Indices: 45284713--45284865 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 82
45284703 AAGGAAAAAA
* * *
45284713 TCCAAAGAATGAAAGAATCTAAGAATAATTATTTGCATCA-TATGATTATGAATG-AAGAATAAA
1 TCCAAAAAATAAAAGAATCTAAGAATAATTATTTGCAT-AGTATAATTATGAATGAAAGAATAAA
45284776 AGAATATTTGAAGGAAAG
65 AGAATATTTGAAGGAAAG
* * *
45284794 TCCAAAAAATAAAAGAATCTAAGAATAATTATTTGCGTAGTGTAATTATGAATGAAAAGAATGAA
1 TCCAAAAAATAAAAGAATCTAAGAATAATTATTTGCATAGTATAATTATGAATG-AAAGAATAAA
45284859 AGAATAT
65 AGAATAT
45284866 CTGCTCAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 47 0.75
83 15 0.24
ACGTcount: A:0.50, C:0.06, G:0.16, T:0.27
Consensus pattern (82 bp):
TCCAAAAAATAAAAGAATCTAAGAATAATTATTTGCATAGTATAATTATGAATGAAAGAATAAAA
GAATATTTGAAGGAAAG
Found at i:45293037 original size:37 final size:37
Alignment explanation
Indices: 45292987--45293065 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
45292977 TTATTACGAA
* *
45292987 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
45293024 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
45293061 GTCTT
1 GTCTT
45293066 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:45293262 original size:47 final size:47
Alignment explanation
Indices: 45293184--45293724 Score: 893
Period size: 47 Copynumber: 11.5 Consensus size: 47
45293174 CCCTTCGGGA
* * * * * *
45293184 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45293231 CCTGTCACATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45293278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45293325 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45293372 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45293419 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45293466 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45293513 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45293560 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45293609 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45293656 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45293703 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
45293725 TTGGCTGAAT
Statistics
Matches: 470, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 424 0.90
49 46 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45297710 original size:29 final size:29
Alignment explanation
Indices: 45297671--45297749 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
45297661 CTTAATAATC
*
45297671 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
45297701 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
45297730 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
45297750 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:45299505 original size:25 final size:25
Alignment explanation
Indices: 45299477--45299526 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
45299467 TGATTTCACA
45299477 TCACCTCTCACACTGATCCGATGTC
1 TCACCTCTCACACTGATCCGATGTC
45299502 TCACCTCTCACACTGATCCGATGTC
1 TCACCTCTCACACTGATCCGATGTC
45299527 ACATAATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.40, G:0.12, T:0.28
Consensus pattern (25 bp):
TCACCTCTCACACTGATCCGATGTC
Found at i:45299730 original size:37 final size:37
Alignment explanation
Indices: 45299680--45299758 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
45299670 TTATTACGAA
* *
45299680 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
45299717 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
45299754 GTCTT
1 GTCTT
45299759 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:45299955 original size:47 final size:47
Alignment explanation
Indices: 45299877--45300323 Score: 723
Period size: 47 Copynumber: 9.5 Consensus size: 47
45299867 CCCTTCGGGA
* * * * * * *
45299877 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45299924 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45299971 CTTATCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45300018 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45300065 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45300112 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45300159 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45300206 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45300255 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45300302 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
45300324 TTGGCTGAAT
Statistics
Matches: 375, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 330 0.88
49 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45302809 original size:49 final size:48
Alignment explanation
Indices: 45302745--45302962 Score: 169
Period size: 48 Copynumber: 4.5 Consensus size: 48
45302735 GGGTGTCACA
* * *
45302745 ATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTAGCTCTCATCT-TCGATGTCGATGCC
* * * *
45302794 ATGTCCCAGATAGGTCTTACACTAGCT-TGCATATCTCGAAGTTGATG-C
1 ATGTCCCAGACAGGTCTTACACTAGCTCT-CATCT-TCGATGTCGATGCC
* * * ** **
45302842 ATGTCCCAGACATGTCTTACAATAGCTCTC-GCTTTAATACCGATGCC
1 ATGTCCCAGACAGGTCTTACACTAGCTCTCATCTTCGATGTCGATGCC
* * * *
45302889 ATGTCCCAGACGTGGTCTTACACTGGCTCTCATATT--ATGGCCGATG-C
1 ATGTCCCAGAC-AGGTCTTACACTAGCTCTCATCTTCGAT-GTCGATGCC
*
45302936 ATGTCCCCAGACATGTCTTACACTAGC
1 ATGT-CCCAGACAGGTCTTACACTAGC
45302963 ACACATCCAT
Statistics
Matches: 133, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
46 6 0.05
47 32 0.24
48 55 0.41
49 40 0.30
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
ATGTCCCAGACAGGTCTTACACTAGCTCTCATCTTCGATGTCGATGCC
Found at i:45302939 original size:47 final size:46
Alignment explanation
Indices: 45302837--45302962 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
45302827 TCTCGAAGTT
* *
45302837 GATGCATGTCCCAGACATGTCTTACAATAGCTCTCGCTTTAATACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATTTAATACC
* * *
45302883 GATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTC-ATATT-ATGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGAT-TTAAT-ACC
45302931 GATGCATGTCCCCAGACATGTCTTACACTAGC
1 GATGCATGT-CCCAGACATGTCTTACACTAGC
45302963 ACACATCCAT
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
46 4 0.06
47 33 0.49
48 31 0.46
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATTTAATACC
Found at i:45312313 original size:45 final size:48
Alignment explanation
Indices: 45312251--45312370 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 48
45312241 TAGTCGACGT
* *
45312251 ATGTCCCAGACATGTCTTACACTAGCTTACTC-T-TGAA-GCCGATG-C
1 ATGTCCCAGACACGTCTTACACTAGC-TACTCGTCTCAATGCCGATGCC
*
45312296 ATGTCCCAGGCACGTCTTACACTAGC-ACTCGTCTCAATGCCGATGCC
1 ATGTCCCAGACACGTCTTACACTAGCTACTCGTCTCAATGCCGATGCC
* *
45312343 ATGTCCTAGACATGGTCTTACACTAGCT
1 ATGTCCCAGACA-CGTCTTACACTAGCT
45312371 CACAAAAATG
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.06
44 1 0.02
45 27 0.43
46 7 0.11
47 11 0.17
48 13 0.21
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGTCCCAGACACGTCTTACACTAGCTACTCGTCTCAATGCCGATGCC
Found at i:45320093 original size:631 final size:631
Alignment explanation
Indices: 45318835--45320095 Score: 2371
Period size: 631 Copynumber: 2.0 Consensus size: 631
45318825 GACACGCCCG
45318835 TGTGTAAAAACCTGAACATTCTATTTCTGACGTTAGCATTTCTTAAGGGTCACTGTAATATCCTA
1 TGTGTAAAAACCTGAACATTCTATTTCTGACGTTAGCATTTCTTAAGGGTCACTGTAATATCCTA
*
45318900 AATTAGGGCTTAATCGGAATAGTGGTTTCATGACCACAAATGCGAGATAGAAATAATTATTTTAT
66 AATTAGAGCTTAATCGGAATAGTGGTTTCATGACCACAAATGCGAGATAGAAATAATTATTTTAT
45318965 AATTATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGC
131 AATTATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGC
* * *
45319030 CTAAAGTGTTTAGATTGAAAGTAGGGACTAAATCGAATAAGTTGTAAAATTTTCATTCTAGAAGT
196 CTAAAGTGTTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAATTTGCATTCTAGAAGT
*
45319095 TTTTAGTATGAAATTGCATTGAAATATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTCT
261 TTTTAGTATGAAATTGCATTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTCT
45319160 AAGTCTATGGACAAAAATTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTG
326 AAGTCTATGGACAAAAATTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTG
45319225 GTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCCATCTTCTTCAT
391 GTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCCATCTTCTTCAT
*
45319290 TACGCTGAAATTTCAAGGGTTCTCCATTGTTAGGGTTTGTTTCAAGCTTCCAAGCTCCAAGTAAG
456 TACGCTGAAATTTCAAGGGTTCTCCATAGTTAGGGTTTGTTTCAAGCTTCCAAGCTCCAAGTAAG
45319355 TGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCTCGGTAGCTCGATTAAGCTTA
521 TGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCTCGGTAGCTCGATTAAGCTTA
*
45319420 TGTTAGTAATAATTCAACCTAGGGTTTATATTTTGGAAAAATACCA
586 TGTTAGCAATAATTCAACCTAGGGTTTATATTTTGGAAAAATACCA
* *
45319466 TGTGTAAAAACCTGAACATTCTATTTCTGACGTTAGCATTTGTTAAGGGTCACTGTAATATCCTG
1 TGTGTAAAAACCTGAACATTCTATTTCTGACGTTAGCATTTCTTAAGGGTCACTGTAATATCCTA
* * *
45319531 AATTAGAGCTTAATCGGAATAGTGGTTTCGTGGCCACAAATTCGAGATAGAAATAATTATTTTAT
66 AATTAGAGCTTAATCGGAATAGTGGTTTCATGACCACAAATGCGAGATAGAAATAATTATTTTAT
45319596 AATTATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGC
131 AATTATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGC
45319661 CTAAAGTGTTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAATTTGCATTCTAGAAGT
196 CTAAAGTGTTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAATTTGCATTCTAGAAGT
45319726 TTTTAGTATGAAATTGCATTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTCT
261 TTTTAGTATGAAATTGCATTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTCT
45319791 AAGTCTATGGACAAAAATTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTG
326 AAGTCTATGGACAAAAATTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTG
45319856 GTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCCATCTTCTTCAT
391 GTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCCATCTTCTTCAT
* *
45319921 TAGGCTGAAATTTCAAGGGTTCTTCATAGTTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAA
456 TACGCTGAAATTTCAAGGGTTCTCCATAGTTAGGGTTTGTTTCAAGCTTCCAAGCTCCA-AGTAA
45319986 GTGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCTCGGTAGCTCGATTAAGCTT
520 GTGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCTCGGTAGCTCGATTAAGCTT
*
45320051 ATGTTAGCAATAATTCAACCTAGGGTTTATA-TTTGTAAAAATACC
585 ATGTTAGCAATAATTCAACCTAGGGTTTATATTTTGGAAAAATACC
45320096 CATAGGTGAA
Statistics
Matches: 614, Mismatches: 15, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
631 514 0.84
632 100 0.16
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (631 bp):
TGTGTAAAAACCTGAACATTCTATTTCTGACGTTAGCATTTCTTAAGGGTCACTGTAATATCCTA
AATTAGAGCTTAATCGGAATAGTGGTTTCATGACCACAAATGCGAGATAGAAATAATTATTTTAT
AATTATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGC
CTAAAGTGTTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAATTTGCATTCTAGAAGT
TTTTAGTATGAAATTGCATTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTCT
AAGTCTATGGACAAAAATTGGACATGGATGGAATTTTTGGAAAGTTTAGTAGTAAGGGCATTTTG
GTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCCATCTTCTTCAT
TACGCTGAAATTTCAAGGGTTCTCCATAGTTAGGGTTTGTTTCAAGCTTCCAAGCTCCAAGTAAG
TGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCTCGGTAGCTCGATTAAGCTTA
TGTTAGCAATAATTCAACCTAGGGTTTATATTTTGGAAAAATACCA
Found at i:45320871 original size:46 final size:46
Alignment explanation
Indices: 45320814--45320982 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
45320804 TGGTTGAGCA
45320814 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
* * ** * *
45320860 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATG-GA-T-GCGAATG
* *
45320907 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
* *
45320953 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
45320983 CTTAGGGGCG
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 60 0.60
47 31 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
Found at i:45320970 original size:93 final size:93
Alignment explanation
Indices: 45320811--45320981 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45320801 GGATGGTTGA
* * *
45320811 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCAAACTCGTTGAGT
45320876 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
45320904 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCAAACTCGTTGAGT
45320969 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45320982 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:45324378 original size:20 final size:21
Alignment explanation
Indices: 45324353--45324394 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
45324343 ATGGCACCAA
45324353 CAGAGTTG-AAGAATTAAAGT
1 CAGAGTTGAAAGAATTAAAGT
45324373 CAGAGTTGAAAGAATTAAAGT
1 CAGAGTTGAAAGAATTAAAGT
45324394 C
1 C
45324395 GCAGTTGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.24
Consensus pattern (21 bp):
CAGAGTTGAAAGAATTAAAGT
Found at i:45328571 original size:93 final size:93
Alignment explanation
Indices: 45328412--45328582 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
45328402 GGATGGTTGA
* * * *
45328412 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGACGCGAACGTCCGAACTCGTTGAGT
45328477 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
45328505 GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGACGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGACGCGAACGTC-CGAACTCGTTGAG
45328569 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
45328583 ACTTAGGGAC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGACGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:45328585 original size:46 final size:47
Alignment explanation
Indices: 45328415--45328593 Score: 188
Period size: 46 Copynumber: 3.9 Consensus size: 47
45328405 TGGTTGAGCA
* * *
45328415 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGC
* * * * * *
45328461 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC-TAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGACGCGAACGC
*
45328507 ATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGACGCGAACGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGC
* *
45328555 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGGGACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACG
45328594 GGTTACATGA
Statistics
Matches: 110, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
45 3 0.03
46 69 0.63
47 34 0.31
48 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGC
Found at i:45330947 original size:46 final size:46
Alignment explanation
Indices: 45330891--45331018 Score: 132
Period size: 46 Copynumber: 2.7 Consensus size: 46
45330881 TCATCTAGTT
* * * *
45330891 GCCAACGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAG
1 GCCAATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAG
* * * * *
45330937 GCCGATGCATGTGCCAAACATGTCTAACACTAGCACTCGTCTCAAT
1 GCCAATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAG
*
45330983 GCCAATGCCATGTCCTAGACATGGTCTTACACTAGC
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGC
45331019 TCACACAAGT
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
46 41 0.63
47 12 0.18
48 12 0.18
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (46 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAG
Found at i:45334041 original size:44 final size:45
Alignment explanation
Indices: 45333982--45334068 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 45
45333972 AATGTGATAT
* *
45333982 TCGGGCCTCGGCCTAGCAAGCTTTAA-GCTGGTGA-ATAATATTA
1 TCGGGCCTCGGCCTAGCAAGCTATAATGCCGGTGAGATAATATTA
* *
45334025 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAATAT
1 TCGGGCCTCG-GCCTAGCAAGCTATAATGCCGGTGAGATAATAT
45334069 CGGTCTTCAG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 9 0.24
44 14 0.38
45 7 0.19
46 7 0.19
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
TCGGGCCTCGGCCTAGCAAGCTATAATGCCGGTGAGATAATATTA
Found at i:45334070 original size:43 final size:42
Alignment explanation
Indices: 45334018--45334131 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 42
45334008 GCTGGTGAAT
* *
45334018 AATATTATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTC-AGCCTAGCAGGCTATAATGCCGATGA
* * *
45334061 GATAATATCGGTCTTCAGGCCTAGTAGGCTATAATGCCGATGA
1 AATAATATCGGGCTTCA-GCCTAGCAGGCTATAATGCCGATGA
*
45334104 AATGATATCGGGCTTCAAGCCTAGCAGG
1 AATAATATCGGGCTTC-AGCCTAGCAGG
45334132 AGAAATGCCA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 1 0.02
43 58 0.97
44 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (42 bp):
AATAATATCGGGCTTCAGCCTAGCAGGCTATAATGCCGATGA
Found at i:45348123 original size:22 final size:22
Alignment explanation
Indices: 45348080--45348120 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
45348070 ATATATATGT
* *
45348080 TATATATATATTAACTTTAATG
1 TATATATATAATAACTTAAATG
45348102 TATATATATAATAA-TTAAA
1 TATATATATAATAACTTAAA
45348121 ATGAATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
TATATATATAATAACTTAAATG
Found at i:45350220 original size:17 final size:17
Alignment explanation
Indices: 45350170--45350222 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
45350160 ATGGCTTGGT
45350170 CACATGGGCATGTGTCA
1 CACATGGGCATGTGTCA
* * *
45350187 CACACGAGCA----ACA
1 CACATGGGCATGTGTCA
45350200 CACATGGGCATGTGTCA
1 CACATGGGCATGTGTCA
45350217 CACATG
1 CACATG
45350223 AGCGTGTGAC
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
13 10 0.38
17 16 0.62
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (17 bp):
CACATGGGCATGTGTCA
Found at i:45355918 original size:35 final size:36
Alignment explanation
Indices: 45355860--45355943 Score: 116
Period size: 35 Copynumber: 2.3 Consensus size: 36
45355850 ATTTTGCTAG
* *
45355860 GTAAGTTCATATGGTGTAATTATGTTTAAATCCTTAT
1 GTAAGTT-ATATTGTGTAATTATGGTTAAATCCTTAT
45355897 GTAAGTTATATTGTG-AATTATGGTTAAATCCTTAT
1 GTAAGTTATATTGTGTAATTATGGTTAAATCCTTAT
* *
45355932 GGATGTTATATT
1 GTAAGTTATATT
45355944 TTTCCAGGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 29 0.67
36 7 0.16
37 7 0.16
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.46
Consensus pattern (36 bp):
GTAAGTTATATTGTGTAATTATGGTTAAATCCTTAT
Found at i:45359169 original size:20 final size:20
Alignment explanation
Indices: 45359144--45359184 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
45359134 TCTACAGACC
*
45359144 AAAATTTTCAAA-ATTTTCCT
1 AAAATTTGCAAATA-TTTCCT
45359164 AAAATTTGCAAATATTTCCT
1 AAAATTTGCAAATATTTCCT
45359184 A
1 A
45359185 TTTAGTTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAATTTGCAAATATTTCCT
Found at i:45360349 original size:12 final size:13
Alignment explanation
Indices: 45360332--45360369 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
45360322 ATCCTGGAAT
45360332 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
45360344 ATTAAGAACACATA
1 ATTAAGAACA-AGA
45360358 ATTAAGAACAAG
1 ATTAAGAACAAG
45360370 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:45366699 original size:12 final size:13
Alignment explanation
Indices: 45366663--45366700 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
45366653 AAATATTTGA
45366663 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
45366676 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
45366690 CTTG-TCTTAAT
1 CTTGTTCTTAAT
45366701 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:45374223 original size:39 final size:40
Alignment explanation
Indices: 45374169--45374345 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
45374159 AAACCAAGTA
* * * *
45374169 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
45374208 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45374248 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
45374288 CCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
45374327 CCTTCTGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45374346 GTATCATCCG
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 46 0.37
40 76 0.62
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45374322 original size:79 final size:80
Alignment explanation
Indices: 45374169--45374345 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 80
45374159 AAACCAAGTA
* * * * **
45374169 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
*
45374233 TAACTCGCACAAATG
66 TAACTAGCACAAATG
45374248 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCAGAAT-T
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATAT
*
45374310 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
*
45374327 CCTTCTGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45374346 GTATCATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 55 0.64
80 31 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
TAACTAGCACAAATG
Found at i:45378619 original size:26 final size:26
Alignment explanation
Indices: 45378590--45378641 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
45378580 GATTCAAATA
45378590 ACAAGTGAAGTCTAGGTGGATTTTTC
1 ACAAGTGAAGTCTAGGTGGATTTTTC
45378616 ACAAGTGAAGTCTAGGTGGATTTTTC
1 ACAAGTGAAGTCTAGGTGGATTTTTC
45378642 CTTAGGTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (26 bp):
ACAAGTGAAGTCTAGGTGGATTTTTC
Found at i:45381533 original size:28 final size:28
Alignment explanation
Indices: 45381458--45381536 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
45381448 GAATCATTCG
* *
45381458 ATATTTAACACACTAAGTGCCATTCTCA
1 ATATTTCACACACTAAGTGTCATTCTCA
* *
45381486 ATATTTCACACACTATGTGTTATTCTCA
1 ATATTTCACACACTAAGTGTCATTCTCA
*
45381514 ATATTTCGCACACTAAGTGTCAT
1 ATATTTCACACACTAAGTGTCAT
45381537 ATTTGATGTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (28 bp):
ATATTTCACACACTAAGTGTCATTCTCA
Found at i:45385370 original size:40 final size:40
Alignment explanation
Indices: 45385276--45385409 Score: 153
Period size: 40 Copynumber: 3.4 Consensus size: 40
45385266 CAGTTATTTG
* * *
45385276 TGGCACTTAGTGTGCGATACAACATAGCTT-TGACTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCTG-CTATATA
*
45385316 TGGCATTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
* * ** *
45385356 TGGCACTTAGTGTGTGATTTGAGATAGCTTCCACTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
* *
45385396 CGACACTTAGTGTG
1 TGGCACTTAGTGTG
45385410 CAAGATATCA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 79 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
Found at i:45385443 original size:28 final size:28
Alignment explanation
Indices: 45385399--45385470 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
45385389 CTATGTACGA
* *
45385399 CACTTAGTGTGCAAGATATCAAGTGTGG
1 CACTTAGTGTGCGAGATATCAAGTATGG
*
45385427 CACTTAGTGTGCGAGATATCGAGTATGG
1 CACTTAGTGTGCGAGATATCAAGTATGG
* * *
45385455 AACTTAATGTGTGAGA
1 CACTTAGTGTGCGAGA
45385471 CATTGAGTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATCAAGTATGG
Found at i:45387946 original size:67 final size:68
Alignment explanation
Indices: 45387873--45388023 Score: 159
Period size: 67 Copynumber: 2.2 Consensus size: 68
45387863 CATCATGTGT
* * * * *
45387873 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGG-CGCATGGGTTATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
45387935 TGTAG
64 TGTAG
* * * *
45387940 ACAAGAGAGCTGCG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
45388003 GTAG
65 GTAG
45388007 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
45388024 TAAACTGGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
63 11 0.16
64 14 0.21
65 1 0.01
66 3 0.04
67 38 0.56
68 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:45396773 original size:68 final size:65
Alignment explanation
Indices: 45396699--45396870 Score: 177
Period size: 67 Copynumber: 2.6 Consensus size: 65
45396689 CATCATGTGT
* * *
45396699 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTACGT-GTACACCAT
1 ACAAGAGAGCTACG-G-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCACGTAGGACACCAT
45396763 GTAG
62 GTAG
* * * *
45396767 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGATACCACGT--AGGACACCATGT
45396832 AG
64 AG
* * * *
45396834 ACAAGAGAGCTACGGGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATG
45396871 GGTGGTACTG
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
64 26 0.29
65 3 0.03
66 14 0.15
67 34 0.37
68 14 0.15
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGATACCACGTAGGACACCATGTAG
Found at i:45397147 original size:20 final size:20
Alignment explanation
Indices: 45397122--45397188 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
45397112 TTATGGTGAC
45397122 CTTGTGATCATGGGCCTATA
1 CTTGTGATCATGGGCCTATA
* *
45397142 CTTGTGATTTTAT-GG--TGA-C
1 CTTGTGA--TCATGGGCCT-ATA
45397161 CTTGTGATCATGGGCCTATA
1 CTTGTGATCATGGGCCTATA
45397181 CTTGTGAT
1 CTTGTGAT
45397189 GTATGAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
17 3 0.08
18 2 0.06
19 9 0.25
20 17 0.47
21 2 0.06
22 3 0.08
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.40
Consensus pattern (20 bp):
CTTGTGATCATGGGCCTATA
Found at i:45397153 original size:39 final size:39
Alignment explanation
Indices: 45397107--45397188 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
45397097 TACATGAGAA
45397107 TGATTTTATGGTGACCTTGTGATCATGGGCCTATACTTG
1 TGATTTTATGGTGACCTTGTGATCATGGGCCTATACTTG
45397146 TGATTTTATGGTGACCTTGTGATCATGGGCCTATACTTG
1 TGATTTTATGGTGACCTTGTGATCATGGGCCTATACTTG
45397185 TGAT
1 TGAT
45397189 GTATGAAATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.18, C:0.15, G:0.26, T:0.41
Consensus pattern (39 bp):
TGATTTTATGGTGACCTTGTGATCATGGGCCTATACTTG
Found at i:45400469 original size:19 final size:18
Alignment explanation
Indices: 45400422--45400474 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
45400412 AAAAATGATT
45400422 TTTATTTCTATTTAATAA
1 TTTATTTCTATTTAATAA
*
45400440 TTTATCATCTA-TTAATAA
1 TTTAT-TTCTATTTAATAA
45400458 TATTGATTTCTAATTTA
1 T-TT-ATTTCT-ATTTA
45400475 GTCCTTAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 13 0.46
19 9 0.32
20 3 0.11
21 3 0.11
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTATTTCTATTTAATAA
Found at i:45405942 original size:44 final size:44
Alignment explanation
Indices: 45405869--45405952 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
45405859 TTGATATCTC
*
45405869 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTGTAACATGGCAATTAAGGAAGAATTGACGGA
*
45405913 AAAGTCCAT-GTTGATAACAT-GCAATTTAAGGAGGAATTGA
1 AAAGTCCATGGTTG-TAACATGGCAA-TTAAGGAAGAATTGA
45405953 AGGTTAAGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 8 0.22
44 28 0.78
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTGTAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:45406157 original size:47 final size:47
Alignment explanation
Indices: 45406091--45406266 Score: 176
Period size: 47 Copynumber: 3.6 Consensus size: 47
45406081 GCATTGACAT
*
45406091 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *** *
45406138 TAAGATAATGATATCATGTAAGACCATGCCAAGG--CATGGCATTGATAAGTTCTA
1 TAAGATAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--T--G----G
*
45406192 TAAGATATGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
45406239 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
45406267 CGAAGGCATG
Statistics
Matches: 102, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
46 9 0.09
47 51 0.50
48 3 0.03
50 1 0.01
51 1 0.01
53 3 0.03
54 25 0.25
55 9 0.09
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:45406210 original size:54 final size:54
Alignment explanation
Indices: 45406138--45406548 Score: 364
Period size: 54 Copynumber: 7.8 Consensus size: 54
45406128 TGGCATTTGG
* * * *
45406138 TAAGATAATGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGACAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * ***
45406192 TAAGATATGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--TG-G-----
1 TAAGACAAGGATACCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTA
* * * *
45406239 TAAGATAAGGATATCATGTAAGACCATGCGAAGGCATGGCATTGATAAGTTCTA
1 TAAGACAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * * * *
45406293 TAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGACAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTA
* * *
45406348 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGAC-AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * * * *
45406401 TAAGGCAAGGATACCATGAAAGAGCATGTCAAGACAT-GCATTGATGAGTTACTA
1 TAAGACAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTA
* * * *
45406455 TAAGGAAAAGG-TCCCATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAA-GACAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * * *
45406508 TAAGGCAAGGATACCATGTAAGGCCATGTCAAGACATGGCA
1 TAAGACAAGGATACCATGTAAGACCATGCCAAGGCATGGCA
45406549 ATGGCAAGTT
Statistics
Matches: 290, Mismatches: 48, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
46 9 0.03
47 26 0.09
48 3 0.01
49 1 0.00
52 22 0.08
53 61 0.21
54 95 0.33
55 69 0.24
56 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
TAAGACAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
Found at i:45406214 original size:101 final size:101
Alignment explanation
Indices: 45406091--45406536 Score: 434
Period size: 101 Copynumber: 4.3 Consensus size: 101
45406081 GCATTGACAT
*
45406091 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAATGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
45406156 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
45406192 TAAGATATGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
45406257 TAAGACCATGCGAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * *** ** *
45406293 TAAGGCAAGGAAATCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG-ATA
* *
45406357 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
61 --T--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * *** ** *
45406401 TAAGGCAAGGATACCATGAAAGAGCATGTCAAG-ACAT-GCATTGATGAGTTACTATAAGGAAAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG-ATA
* * *
45406464 GGTCCCATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-A
61 --T--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
45406508 TAAGGCAAGGATACCATGTAAGGCCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
45406537 CAAGACATGG
Statistics
Matches: 309, Mismatches: 27, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
100 10 0.03
101 122 0.39
102 2 0.01
103 1 0.00
104 8 0.03
105 2 0.01
107 95 0.31
108 34 0.11
109 35 0.11
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (101 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:45406573 original size:107 final size:108
Alignment explanation
Indices: 45406253--45406548 Score: 479
Period size: 107 Copynumber: 2.7 Consensus size: 108
45406243 ATAAGGATAT
* * * * * *
45406253 CATGTAAGACCATGCGAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGGCC
*
45406318 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
*
45406362 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGAAAGAG-C
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAG-GCC
45406426 ATGTCAAGACAT-GCATTGATGAGTTACTATAAGGAAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
*
45406469 CATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGGCCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGGCCA
45406534 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
45406549 ATGGCAAGTT
Statistics
Matches: 174, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
106 1 0.01
107 102 0.59
108 36 0.21
109 35 0.20
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGGCCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
Found at i:45406659 original size:58 final size:58
Alignment explanation
Indices: 45406569--45406686 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
45406559 CAAAAAGGAA
45406569 AAGGTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAG
1 AAGGTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAG
45406627 AAGGTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAG
1 AAGGTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAG
45406685 AA
1 AA
45406687 TGAGTATTGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.14
Consensus pattern (58 bp):
AAGGTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAG
Found at i:45416906 original size:48 final size:48
Alignment explanation
Indices: 45416639--45416914 Score: 315
Period size: 48 Copynumber: 5.8 Consensus size: 48
45416629 TAAAGTACCA
* * * ** *
45416639 ATGCCATGTCCCCGTCATGGTCTTACATGAATC-CATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCTCCG
* * * *
45416687 ATACCATGTCCCAGACATGCTCTTACACTGGCACACATATCAT-TGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCT-CCG
* * * * *
45416735 ATGCCATGTCCCAGACATGGTCTTACGCAGGCACACATTTTATCGT-TG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATC-TCCG
* *
45416783 ATGCCATGTCCCAAACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCTCCG
* * **
45416831 ATACCATGTCCCAGACATGGTCTTACACAGGCATATATATCATCTCTA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCTCCG
45416879 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
45416915 TTACCACGGT
Statistics
Matches: 191, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 189 0.99
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCTCCG
Found at i:45424662 original size:48 final size:48
Alignment explanation
Indices: 45424432--45424658 Score: 251
Period size: 48 Copynumber: 4.7 Consensus size: 48
45424422 TAAAGTACCA
* * * * *
45424432 ATGCCATGTCCCCGACATAGTCTTACA-T-GAATCCACATATCATTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGCCG
* * *
45424480 ACGCCATGTCCCAGACATGATCTAACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * *
45424528 ATTCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * * ** *
45424576 ATGCCATGTCCCACACATGGTCTTACACCGGAACATTTATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
45424624 ATGCCATATCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
45424659 TTTAGCACGG
Statistics
Matches: 151, Mismatches: 26, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
48 148 0.98
49 1 0.01
50 2 0.01
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
Found at i:45428550 original size:20 final size:20
Alignment explanation
Indices: 45428525--45428572 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
45428515 TGGGTGAAGG
45428525 ACACGGGCGTGTCCCTAAGC
1 ACACGGGCGTGTCCCTAAGC
45428545 ACACGGGCGTGTCCCTAAGC
1 ACACGGGCGTGTCCCTAAGC
45428565 ACACGGGC
1 ACACGGGC
45428573 ATGTGCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.35, G:0.31, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCTAAGC
Found at i:45436238 original size:13 final size:13
Alignment explanation
Indices: 45436220--45436244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45436210 AGGTCATGTG
45436220 AGGGACATGGGCC
1 AGGGACATGGGCC
45436233 AGGGACATGGGC
1 AGGGACATGGGC
45436245 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.48, T:0.08
Consensus pattern (13 bp):
AGGGACATGGGCC
Found at i:45443260 original size:35 final size:35
Alignment explanation
Indices: 45443214--45443286 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
45443204 ACACATTCTT
45443214 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
45443249 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
45443284 TAT
1 TAT
45443287 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:45460475 original size:40 final size:40
Alignment explanation
Indices: 45460408--45460579 Score: 197
Period size: 40 Copynumber: 4.3 Consensus size: 40
45460398 ACCCAAGTAT
* *
45460408 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
45460447 CTTTGGGTCTTAGCCCGGATATAGCAACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
45460487 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTAGCACAAATGC
* * * *
45460527 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
45460567 CTTTGGATCTTAG
1 CTTCGGGTCTTAG
45460580 TCCGATTATC
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 98 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:45462304 original size:6 final size:6
Alignment explanation
Indices: 45462274--45462333 Score: 59
Period size: 6 Copynumber: 9.8 Consensus size: 6
45462264 AAGAAACATT
* * * *
45462274 ATCAGA A-CTAGA ATCATA ATGAGA ATCAGA ATCAGT ATCATGT ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA
45462323 ATCAGA ATCAG
1 ATCAGA ATCAG
45462334 TATTAGGTGA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 1 0.02
6 37 0.82
7 7 0.16
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (6 bp):
ATCAGA
Found at i:45462322 original size:19 final size:18
Alignment explanation
Indices: 45462283--45462336 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
45462273 TATCAGAACT
* * *
45462283 AGAATCATAATGAGAATC
1 AGAATCAGAATCAGTATC
*
45462301 AGAATCAGTATCATGTATC
1 AGAATCAGAATCA-GTATC
45462320 AGAATCAGAATCAGTAT
1 AGAATCAGAATCAGTAT
45462337 TAGGTGACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (18 bp):
AGAATCAGAATCAGTATC
Found at i:45462328 original size:25 final size:24
Alignment explanation
Indices: 45462295--45462380 Score: 109
Period size: 25 Copynumber: 3.5 Consensus size: 24
45462285 AATCATAATG
*
45462295 AGAATCAGAATCAGTATCATGTATC
1 AGAATCAGAATCAGTATCAGGTA-C
*
45462320 AGAATCAGAATCAGTATTAGGTGAC
1 AGAATCAGAATCAGTATCAGGT-AC
*
45462345 AAAATCAGAATCAGTATCAGGTAGC
1 AGAATCAGAATCAGTATCAGGTA-C
*
45462370 AGAGTCAGAAT
1 AGAATCAGAAT
45462381 GTGAATGCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 51 0.96
26 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (24 bp):
AGAATCAGAATCAGTATCAGGTAC
Found at i:45462554 original size:27 final size:26
Alignment explanation
Indices: 45462496--45462577 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
45462486 CAGCATGGCT
* *
45462496 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAGAGCC
*
45462522 ATCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGGCAGAGCC
* *
45462549 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAA-CAGATATTGTGGCAGAGCC
45462576 AC
1 AC
45462578 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGCC
Found at i:45463275 original size:27 final size:27
Alignment explanation
Indices: 45463245--45463360 Score: 110
Period size: 27 Copynumber: 4.3 Consensus size: 27
45463235 GGAAAAATGG
* *
45463245 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAAGGGTATTTCGA
* * * *
45463272 TAATTCTACCCTGCAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATTTCGA
*
45463299 T-ATTTATACCCTACAATGGTATTTC-A
1 TAATTT-TACCCTACAAGGGTATTTCGA
* * *
45463325 GTAATTCTACCCTACAGGGGTATTTCAA
1 -TAATTTTACCCTACAAGGGTATTTCGA
45463353 TAATTTTA
1 TAATTTTA
45463361 TAATCGAGGG
Statistics
Matches: 70, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
26 3 0.04
27 63 0.90
28 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATTTCGA
Found at i:45463309 original size:54 final size:53
Alignment explanation
Indices: 45463247--45463350 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 53
45463237 AAAAATGGTA
*
45463247 ATTTTACCCCACAAGGGTATCTC-GATAATTCTACCCTGCAGGGGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCTCAG-TAATTCTACCCTACAGGGGTATTTCGGT
* * *
45463300 ATTTATACCCTACAATGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
1 ATTT-TACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
45463351 AATAATTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
53 4 0.09
54 40 0.89
55 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:45463425 original size:27 final size:25
Alignment explanation
Indices: 45463395--45463519 Score: 88
Period size: 27 Copynumber: 4.6 Consensus size: 25
45463385 TATAAATTGG
*
45463395 GGGTACTTTGGTAATTTTACAAGCCGA
1 GGGTA-TTTGGTAATTTTACAA-ACGA
**
45463422 GGGTATTTCAATAATTTTACAAGACGA
1 GGGTATTT-GGTAATTTTACAA-ACGA
* * **
45463449 GGGTATTTCAGTAATTTCACAAATTA
1 GGGTATTT-GGTAATTTTACAAACGA
* *
45463475 GGGGTATTTTGGTAATTTTGCTAATCGA
1 -GGGTA-TTTGGTAATTTTAC-AAACGA
45463503 GGGTATTTTGGTAATTT
1 GGGTA-TTTGGTAATTT
45463520 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.06
27 70 0.86
28 6 0.07
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (25 bp):
GGGTATTTGGTAATTTTACAAACGA
Found at i:45467623 original size:29 final size:29
Alignment explanation
Indices: 45467564--45467621 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
45467554 CAAATAGCCG
45467564 AAGCTAGTTAAATCGCACACTTAGTGCCC
1 AAGCTAGTTAAATCGCACACTTAGTGCCC
45467593 AAGCTAGTTTAAATCGCACACTTAGTGCC
1 AAGCTAG-TTAAATCGCACACTTAGTGCC
45467622 AAAACTTCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCC
Found at i:45475798 original size:40 final size:40
Alignment explanation
Indices: 45475743--45475952 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 40
45475733 TATTCGAATG
*
45475743 ATATCCGGGCTAAGTCCCGAAGGCATTTGGGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
45475783 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC------C-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
45475816 ----CC-GGCTAAGTCCCGAAGGCATTTATGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
45475851 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
45475891 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
45475931 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
45475953 TACTTGGGTT
Statistics
Matches: 148, Mismatches: 9, Indels: 27
0.80 0.05 0.15
Matches are distributed among these distances:
28 24 0.16
29 2 0.01
34 2 0.01
39 15 0.10
40 102 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:45475859 original size:68 final size:68
Alignment explanation
Indices: 45475750--45475882 Score: 239
Period size: 68 Copynumber: 2.0 Consensus size: 68
45475740 ATGATATCCG
* *
45475750 GGCTAAGTCCCGAAGGCATTTGGGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTAGGCTATTGACTATATCCGGGCTAAGTCCCAAAGGCATTTGTGC
45475815 CCC
66 CCC
*
45475818 GGCTAAGTCCCGAAGGCATTTATGCTATTGACTATATCCGGGCTAAGTCCCAAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTAGGCTATTGACTATATCCGGGCTAAGTCCCAAAGGCATTTGTGC
45475883 TATTGACTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (68 bp):
GGCTAAGTCCCGAAGGCATTTAGGCTATTGACTATATCCGGGCTAAGTCCCAAAGGCATTTGTGC
CCC
Found at i:45483777 original size:40 final size:40
Alignment explanation
Indices: 45483722--45483863 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
45483712 TATTCGAATG
*
45483722 ATATCCGGGCTAAGTCCCGAAGGCATTTGGGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
45483762 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
45483802 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
45483842 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
45483864 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.14
40 78 0.83
41 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:45485366 original size:42 final size:43
Alignment explanation
Indices: 45485319--45485419 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
45485309 TCCCGGACGT
* * *
45485319 GGTCTTACATGTAATTCAG-TATGATGCCTCTATCCCAGACAG
1 GGTCTTACATGTAAATCAGATACGATGCCTATATCCCAGACAG
** * *
45485361 GGTCTTAC-TCAAAATCAGATACGATGCCTATGTCCCAGACAT
1 GGTCTTACATGTAAATCAGATACGATGCCTATATCCCAGACAG
*
45485403 GGTCTTACACGTAAATC
1 GGTCTTACATGTAAATC
45485420 TCAAATCGAG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
41 7 0.15
42 35 0.74
43 5 0.11
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAGATACGATGCCTATATCCCAGACAG
Found at i:45492332 original size:29 final size:29
Alignment explanation
Indices: 45492269--45492336 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
45492259 TAATCACCCA
* *
45492269 CGCACACTCAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
45492298 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
45492327 CGCACACTTA
1 CGCACACTTA
45492337 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:45492478 original size:29 final size:30
Alignment explanation
Indices: 45492439--45492517 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
45492429 CTTAATAATC
45492439 AACCGCGCACACTTAGTGCCATGTAC-TGTA
1 AACC-CGCACACTTAGTGCCATGTACATGTA
* *
45492469 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATGTA
45492498 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
45492518 ATCTCATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATGTA
Found at i:45492481 original size:175 final size:175
Alignment explanation
Indices: 45492157--45492484 Score: 498
Period size: 175 Copynumber: 1.9 Consensus size: 175
45492147 AACTCAAGGT
* ** *
45492157 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGCCGCACCCTTCGTGTAAATAATTTATG
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGCCGCACCCTTAATGTAAATAATTTATA
* * *
45492222 GAAAATATATATATTGGGTTGCACACATAATGTTTAGTAATCACCCACGCACACTCAGTGCCATG
66 GAAAATATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTCAGTGCCATG
*
45492287 CACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
131 CACTGTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
*
45492332 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGCCGCACCCTTAATGTAAATAATTTAT
* * *
45492397 AG-AAA-ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCA
65 AGAAAATATATATATTGGGTT-GCACACATAATGCTTAATAATCAACCACGCACACTCAGTGCCA
* *
45492460 TGTACTGTAAACTCGCACACTTAGT
129 TGCACTGTAAACTCACACACTTAGT
45492485 GCTGTACAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
174 14 0.10
175 69 0.50
176 54 0.39
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (175 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGCCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTCAGTGCCATG
CACTGTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
Found at i:45500354 original size:29 final size:30
Alignment explanation
Indices: 45500315--45500393 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
45500305 CTTAATAATC
45500315 AACCGCGCACACTTAGTGCCATGTAC-TGTA
1 AACC-CGCACACTTAGTGCCATGTACATGTA
* *
45500345 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATGTA
45500374 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
45500394 ATCTCATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATGTA
Found at i:45500357 original size:175 final size:175
Alignment explanation
Indices: 45500033--45500360 Score: 489
Period size: 175 Copynumber: 1.9 Consensus size: 175
45500023 AACTCAAGGT
* ** *
45500033 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGCCGCACCCTTCGTGTAAATAATTTATG
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGCCGCACCCTTAATGTAAATAATTTATA
* * * *
45500098 GAAAATATATATATTGGGTTGCACACATAATGTTTAGTAATCACCCATGCACACTCAGTGCCATG
66 GAAAATATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTCAGTGCCATG
*
45500163 CACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
131 CACTGTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
*
45500208 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGCCGCACCCTTAATGTAAATAATTTAT
* * *
45500273 AG-AAA-ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCA
65 AGAAAATATATATATTGGGTT-GCACACATAATGCTTAATAATCAACCACGCACACTCAGTGCCA
* *
45500336 TGTACTGTAAACTCGCACACTTAGT
129 TGCACTGTAAACTCACACACTTAGT
45500361 GCTGTACAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
174 14 0.10
175 68 0.50
176 54 0.40
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (175 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGCCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTCAGTGCCATG
CACTGTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
Found at i:45502046 original size:24 final size:24
Alignment explanation
Indices: 45502018--45502113 Score: 147
Period size: 24 Copynumber: 4.0 Consensus size: 24
45502008 TTATCTGTTA
*
45502018 TATTGAGTGGCTTGATCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
*
45502042 TATTGAGTAGCTTGACCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
* *
45502066 TATTGAGTGGCTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAACGT
*
45502090 TATTGAGTGGCTTGGCCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
45502114 GGAGTGTTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAACGT
Found at i:45502207 original size:23 final size:24
Alignment explanation
Indices: 45502176--45502220 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
45502166 AGATAGGTAG
*
45502176 GATTGTTTGTGAAAAACT-TGCACT
1 GATTGTTTG-AAAAAACTCTGCACT
45502200 GATT-TTTGAAAAAACTCTGCA
1 GATTGTTTGAAAAAACTCTGCA
45502221 TTGACATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 8 0.42
24 4 0.21
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (24 bp):
GATTGTTTGAAAAAACTCTGCACT
Found at i:45506585 original size:43 final size:43
Alignment explanation
Indices: 45506538--45506630 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
45506528 ATATGTGATT
**
45506538 TTGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAGTGGCA
1 TTGATATGTGGCTAC-ATGTAAGACCAC-GTCTGGGACAGTGGCA
* *
45506581 TTGATATGTGGCTACATGTAAGACCACGTTTGGGACATTGGCA
1 TTGATATGTGGCTACATGTAAGACCACGTCTGGGACAGTGGCA
45506624 TTG-TATG
1 TTGATATG
45506631 ATTTATGTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
42 5 0.11
43 38 0.86
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (43 bp):
TTGATATGTGGCTACATGTAAGACCACGTCTGGGACAGTGGCA
Found at i:45514740 original size:43 final size:43
Alignment explanation
Indices: 45514690--45514776 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
45514680 ATGTGATTTC
** * *
45514690 GATATGTGTTTACGAGTAAGACC-CTATTTGGGACAG-TGGCATT
1 GATATGTGGCTACAAGTAAGACCAC-ATCTGGGAC-GTTGGCATT
45514733 GATATGTGGCTACAAGTAAGACCACATCTGGGACGTTGGCATT
1 GATATGTGGCTACAAGTAAGACCACATCTGGGACGTTGGCATT
45514776 G
1 G
45514777 TACGATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
GATATGTGGCTACAAGTAAGACCACATCTGGGACGTTGGCATT
Found at i:45515721 original size:35 final size:35
Alignment explanation
Indices: 45515680--45515833 Score: 184
Period size: 35 Copynumber: 4.3 Consensus size: 35
45515670 TATATGAACC
45515680 TTGTATAATCGACCATATGTGATGATATATTGAAT
1 TTGTATAATCGACCATATGTGATGATATATTGAAT
* * *
45515715 TCGTATATTCGATCATATGTGATGATATATTGAAT
1 TTGTATAATCGACCATATGTGATGATATATTGAAT
* *** *
45515750 TTGTATATTCGGTTATATGTGAGGATATATTGAATT
1 TTGTATAATCGACCATATGTGATGATATATTGAA-T
*
45515786 TTGTATAATC-AGCCATATGTGATGATATATTGAACC
1 TTGTATAATCGA-CCATATGTGATGATATATTGAA-T
*
45515822 TTGTATATTCGA
1 TTGTATAATCGA
45515834 TCTTATAGGT
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
35 62 0.61
36 38 0.38
37 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (35 bp):
TTGTATAATCGACCATATGTGATGATATATTGAAT
Found at i:45515855 original size:50 final size:50
Alignment explanation
Indices: 45515801--45515906 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
45515791 TAATCAGCCA
* * * *
45515801 TATGTGATGATATATTGAACCTT-GTATATTC-GATCTTATAGGTATGTACT
1 TATGTGATGATATAATGAA-CTTGGTATATCCAG-TCATATAGGTAAGTACT
* *
45515851 TATGTAATGATATAATGAACTTGGTATATCCAGTCATATAGGTAAGTATT
1 TATGTGATGATATAATGAACTTGGTATATCCAGTCATATAGGTAAGTACT
45515901 TATGTG
1 TATGTG
45515907 GTGTTCCAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
49 3 0.06
50 43 0.91
51 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (50 bp):
TATGTGATGATATAATGAACTTGGTATATCCAGTCATATAGGTAAGTACT
Found at i:45522670 original size:47 final size:48
Alignment explanation
Indices: 45522601--45522726 Score: 182
Period size: 48 Copynumber: 2.6 Consensus size: 48
45522591 GTTACATGTT
45522601 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * * * *
45522648 TAACCGTGGCATATCCAGTTAGCACCACGATACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
*
45522696 TAATCATGGTATATCCACTTAGCACCACGTT
1 TAACCATGGTATATCCACTTAGCACCACGTT
45522727 TTTTGATTCC
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 28 0.42
48 39 0.58
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (48 bp):
TAACCATGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:45524161 original size:17 final size:18
Alignment explanation
Indices: 45524128--45524161 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45524118 AAATGGTGAT
45524128 TTTAAAGTTAAAATAATG
1 TTTAAAGTTAAAATAATG
*
45524146 TTTAAA-TTATAATAAT
1 TTTAAAGTTAAAATAAT
45524162 TAACTCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TTTAAAGTTAAAATAATG
Found at i:45532097 original size:30 final size:30
Alignment explanation
Indices: 45532063--45532123 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45532053 TCCTTAACTC
*
45532063 AAACTTTGGGAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
45532093 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
45532123 A
1 A
45532124 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:45539479 original size:29 final size:29
Alignment explanation
Indices: 45539437--45539497 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
45539427 TTTTTATAGT
45539437 TTATTACTAGAAGAAACCCGTCAAGACCC
1 TTATTACTAGAAGAAACCCGTCAAGACCC
45539466 TTATTACTAGAAGAAACCCGTCAAGACCC
1 TTATTACTAGAAGAAACCCGTCAAGACCC
45539495 TTA
1 TTA
45539498 CTTTTTGACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (29 bp):
TTATTACTAGAAGAAACCCGTCAAGACCC
Found at i:45550108 original size:5 final size:5
Alignment explanation
Indices: 45550098--45550177 Score: 56
Period size: 6 Copynumber: 14.8 Consensus size: 5
45550088 TATGTCTTTC
* *
45550098 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
45550146 AAAAAT AAAAT AAAAT AAAAAT AAGAAT AAAA
1 -AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAA
45550178 AAATAGTAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
3 3 0.05
5 22 0.36
6 36 0.59
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:45550127 original size:6 final size:6
Alignment explanation
Indices: 45550118--45550178 Score: 72
Period size: 6 Copynumber: 10.5 Consensus size: 6
45550108 AATAAAATTG
* * *
45550118 AAATGA AAATAA AAATCA AAAGAA AAATAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
45550164 AAATAA GAATAA AAA
1 AAATAA AAATAA AAA
45550179 AATAGTAGGA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
5 10 0.21
6 37 0.79
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:45550130 original size:17 final size:17
Alignment explanation
Indices: 45550108--45550169 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 17
45550098 AAAATAAAAT
* *
45550108 AATAAAATTGAAATGAA
1 AATAAAAATAAAATGAA
45550125 AATAAAAATCAAAA-GAAA
1 AATAAAAAT-AAAATG-AA
45550143 AATAAAAATAAAAT-AA
1 AATAAAAATAAAATGAA
45550159 AATAAAAATAA
1 AATAAAAATAA
45550170 GAATAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 13 0.32
17 13 0.32
18 14 0.35
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
AATAAAAATAAAATGAA
Found at i:45550149 original size:11 final size:11
Alignment explanation
Indices: 45550098--45550178 Score: 74
Period size: 12 Copynumber: 6.9 Consensus size: 11
45550088 TATGTCTTTC
45550098 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
45550111 AAAATTGAAAT
1 AAAATAAAAAT
45550122 GAAAATAAAAAT
1 -AAAATAAAAAT
*
45550134 CAAAAGAAAAAT
1 -AAAATAAAAAT
45550146 AAAA-ATAAAAT
1 AAAATA-AAAAT
45550157 AAAATAAAAAT
1 AAAATAAAAAT
45550168 AAGAATAAAAA
1 AA-AATAAAAA
45550179 AATAGTAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
10 1 0.02
11 23 0.40
12 29 0.50
13 5 0.09
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:45555276 original size:17 final size:18
Alignment explanation
Indices: 45555244--45555294 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
45555234 AGAGAGAGAA
45555244 AAAATAAATTAATAAATAAT
1 AAAATAAA--AATAAATAAT
*
45555264 AAAAT-AAAATAAA-ATT
1 AAAATAAAAATAAATAAT
*
45555280 ACAATAAAAATAAAT
1 AAAATAAAAATAAAT
45555295 GGCTAAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 6 0.22
17 14 0.52
19 2 0.07
20 5 0.19
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAATAAAAATAAATAAT
Found at i:45561099 original size:47 final size:47
Alignment explanation
Indices: 45561036--45561352 Score: 571
Period size: 47 Copynumber: 6.7 Consensus size: 47
45561026 ATGATAGTAT
45561036 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45561083 GGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
45561130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45561177 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
45561224 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45561271 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
45561320 GGCCTAATGGCTGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
45561353 CCCGAAGGGC
Statistics
Matches: 261, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 217 0.83
49 40 0.15
50 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:45561526 original size:37 final size:37
Alignment explanation
Indices: 45561470--45561548 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45561460 CCGAGCTCTA
* * *
45561470 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45561507 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45561544 AAGAC
1 AAGAC
45561549 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45565798 original size:26 final size:26
Alignment explanation
Indices: 45565724--45565811 Score: 90
Period size: 26 Copynumber: 3.4 Consensus size: 26
45565714 GTCATAATAT
45565724 CAGTCATTTTACCTTTAGGGGTATAA
1 CAGTCATTTTACCTTTAGGGGTATAA
* ** * *
45565750 CAGTTA-AATA-CTGCATAGGGGTATAT
1 CAGTCATTTTACCT--TTAGGGGTATAA
*
45565776 CAGTCATTTTACCTTTAGAGGTATAA
1 CAGTCATTTTACCTTTAGGGGTATAA
45565802 CAGTCATTTT
1 CAGTCATTTT
45565812 GACAGTACAG
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
24 2 0.04
25 2 0.04
26 39 0.83
27 2 0.04
28 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (26 bp):
CAGTCATTTTACCTTTAGGGGTATAA
Found at i:45565960 original size:17 final size:19
Alignment explanation
Indices: 45565924--45565960 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
45565914 AAAGCCCATA
45565924 ACACGGCCCATGTGGGCCC
1 ACACGGCCCATGTGGGCCC
45565943 ACAC-GCCCATGT-GGCCC
1 ACACGGCCCATGTGGGCCC
45565960 A
1 A
45565961 TTAATCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 8 0.44
19 4 0.22
ACGTcount: A:0.19, C:0.43, G:0.27, T:0.11
Consensus pattern (19 bp):
ACACGGCCCATGTGGGCCC
Found at i:45571827 original size:13 final size:13
Alignment explanation
Indices: 45571809--45571833 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45571799 TGTTGGTACA
45571809 CACGGCCATGTCG
1 CACGGCCATGTCG
45571822 CACGGCCATGTC
1 CACGGCCATGTC
45571834 CTACTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGGCCATGTCG
Found at i:45582433 original size:80 final size:80
Alignment explanation
Indices: 45582285--45582558 Score: 381
Period size: 80 Copynumber: 3.4 Consensus size: 80
45582275 GGGCAAAATG
* * * * ** *
45582285 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACTCTAC-GGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
45582349 CTACAAGGGTATTTC
66 CTACAAGGGTATTTC
*
45582364 AGTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTT-TAC
1 -GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
* *
45582428 TCTACAGGGGTATTTC
65 CCTACAAGGGTATTTC
* *
45582444 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 -GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
*
45582509 CCTATAAGGGTATTTC
65 CCTACAAGGGTATTTC
*
45582525 GATAACTCTACCCTACAGGGGTATTTCAATAATT
1 G-TAATTCTACCCTACAGGGGTATTTCAATAATT
45582559 TTGTAAACTA
Statistics
Matches: 171, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 109 0.64
81 62 0.36
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
CTACAAGGGTATTTC
Found at i:45582466 original size:107 final size:108
Alignment explanation
Indices: 45582286--45582551 Score: 374
Period size: 107 Copynumber: 2.5 Consensus size: 108
45582276 GGCAAAATGG
* * * *
45582286 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACTCTAC-GGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTCGGTAATTCTACCC
*
45582350 TACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAA
66 TACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAA
* * *
45582393 TAATTCTACCCTACAGGGGTATTTCGGT-ATTTTACTCTACAGGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTCGGTAATTCTACCC
* **
45582457 TACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
66 TACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAA
* * * * *
45582500 TATTTCTACCCTATAAGGGTATTTCGATAACTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTC
45582552 AATAATTTTG
Statistics
Matches: 139, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
106 11 0.08
107 108 0.78
108 20 0.14
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (108 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTCGGTAATTCTACCC
TACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAA
Found at i:45582556 original size:27 final size:27
Alignment explanation
Indices: 45582284--45582551 Score: 342
Period size: 27 Copynumber: 10.0 Consensus size: 27
45582274 GGGGCAAAAT
* * * *
45582284 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45582311 GGTAATTCTACTCTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45582337 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45582364 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
45582391 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45582418 GGT-ATTTTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45582444 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45582471 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45582498 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45582525 GATAACTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45582552 AATAATTTTG
Statistics
Matches: 207, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 46 0.22
27 161 0.78
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45585848 original size:42 final size:44
Alignment explanation
Indices: 45585747--45585886 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 44
45585737 GTACCAGATG
* * * * *
45585747 TGGTCTTACATGT-AATCA-AATATCAATGCCACTGTCCCAGAGA
1 TGGTCTTACACGTAAATCACAA-ATCGATACCAATGTCCCAGACA
* * *
45585790 GGGTCTTACATG-AAATCATAAAT-GATACCAATGTCCCAGACA
1 TGGTCTTACACGTAAATCACAAATCGATACCAATGTCCCAGACA
* **
45585832 T-GTGTTACACGTAAATCACAAATCGATGTCAATGTCCCAGACA
1 TGGTCTTACACGTAAATCACAAATCGATACCAATGTCCCAGACA
45585875 TGGTCTTACACG
1 TGGTCTTACACG
45585887 ATAACACATA
Statistics
Matches: 80, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
41 8 0.10
42 25 0.31
43 36 0.45
44 11 0.14
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (44 bp):
TGGTCTTACACGTAAATCACAAATCGATACCAATGTCCCAGACA
Found at i:45591549 original size:13 final size:13
Alignment explanation
Indices: 45591531--45591555 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45591521 TGAATTAGTA
45591531 TGTATGAAAATTC
1 TGTATGAAAATTC
45591544 TGTATGAAAATT
1 TGTATGAAAATT
45591556 TGATCGTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTATGAAAATTC
Found at i:45599911 original size:55 final size:54
Alignment explanation
Indices: 45599811--45600010 Score: 165
Period size: 55 Copynumber: 3.7 Consensus size: 54
45599801 TTAAGGATAC
* * *
45599811 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTT-TCTAAGGCAAGAAAAT
1 CATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCTATAAGGCAAGAAAAT
* * **
45599866 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC-A-AAGGT
1 CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGCAAGAAAAT
* * * * * * *
45599919 CCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGGATGGATAC
1 --CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGAAAAT
* * * *
45599974 CACGTAAGACCATGTCAAGACATCGCAATGGTAAGTT
1 CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
45600011 TCAAAAGGAT
Statistics
Matches: 116, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
53 43 0.37
54 9 0.08
55 64 0.55
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGAAAAT
Found at i:45600009 original size:108 final size:110
Alignment explanation
Indices: 45599810--45600010 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
45599800 TTTAAGGATA
* *
45599810 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGAAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGAAAACCACGTAAGA
* *
45599875 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATCGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * * * *
45599920 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGGATGGATACCACGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGAAAACCACGTAAG
*
45599982 ACCATGTCAAGACATCGCAATGGTAAGTT
65 ACCATGTCAAGACATCGCAATGATAAGTT
45600011 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 43 0.54
109 7 0.09
110 26 0.33
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGAAAACCACGTAAGA
CCATGTCAAGACATCGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:45607696 original size:55 final size:53
Alignment explanation
Indices: 45607608--45607817 Score: 197
Period size: 55 Copynumber: 3.9 Consensus size: 53
45607598 CATTAGGGTT
* * *
45607608 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGTTAAGGTTTCTAAGG
1 TAAGGAAACCATGTAAGACCATGCCAAGACATGGC-ATTGATAA-GTTTCTAAGG
* * *
45607663 TAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT--TCTAAGG
* * *** * * *
45607718 CAAAGCTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 TAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTC-TAAGG
* * * * *
45607771 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTT
1 TAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTT
45607818 AAAAAGGATA
Statistics
Matches: 127, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
52 1 0.01
53 45 0.35
54 10 0.08
55 71 0.56
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (53 bp):
TAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCTAAGG
Found at i:45607815 original size:108 final size:110
Alignment explanation
Indices: 45607616--45607816 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
45607606 TTTAAGGATA
* * *
45607616 CCATGTAAGACCATGCCAAGGCATGGCAATTGTTAAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
45607681 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGCTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGCTC
* *
45607726 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
45607788 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
45607817 TAAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 6 0.07
110 27 0.33
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGCTC
Done.