Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 142 of 373
Found at i:47101341 original size:54 final size:53
Alignment explanation
Indices: 47101185--47101417 Score: 197
Period size: 54 Copynumber: 4.3 Consensus size: 53
47101175 TACCGTACAA
* ** **
47101185 GGGTATTTCAGTAATTTTACCCTA-CAAGGGTATTTTGGTAATTCTAC-CCTACAG
1 GGGTATTTTAGTAATTTTA-CAAACCAAGGGTATTTTGGTAATT-TACAAAT-CAG
* * * * * *
47101239 GGGTATTTT-G-ATATTTTACAAATCGAGAGCATTTCGATAATTTCACAAATCAG
1 GGGTATTTTAGTA-ATTTTACAAACCAAGGGTATTTTGGTAATTT-ACAAATCAG
* * *
47101292 GGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAACTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAA-TTTACAAATCAG
* * **
47101346 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATC-G
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAA-TTTACAAATCAG
47101399 AGGGTATTTTAGTAATTTT
1 -GGGTATTTTAGTAATTTT
47101418 GTAAATTAAG
Statistics
Matches: 145, Mismatches: 26, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
52 4 0.03
53 36 0.25
54 101 0.70
55 4 0.03
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTACAAATCAG
Found at i:47101408 original size:27 final size:27
Alignment explanation
Indices: 47101102--47101392 Score: 159
Period size: 27 Copynumber: 10.8 Consensus size: 27
47101092 TCTACCCTAT
* **
47101102 AGGGGTATTTTGGTAATTCTACCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACA
* * * **
47101129 AGGGTTATTTCGGTAATTCTACCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACA
* * * **
47101156 AGGGTTATTTCGGTAATTCTACCGTACA
1 AGGGGTATTTTGGTAATTTTA-CAAACA
** **
47101184 A-GGGTATTTCAGTAATTTTACCCTACA
1 AGGGGTATTTTGGTAATTTTA-CAAACA
* **
47101211 A-GGGTATTTTGGTAATTCTACCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACA
* *
47101237 AGGGGTATTTTGAT-ATTTTACAAATCG
1 AGGGGTATTTTGGTAATTTTACAAA-CA
* * * * *
47101264 A-GAGCATTTCGATAATTTCACAAATC-
1 AGGGGTATTTTGGTAATTTTACAAA-CA
*
47101290 AGGGGTATTTTGGTAATTTTACAAGCCA
1 AGGGGTATTTTGGTAATTTTACAA-ACA
* *
47101318 A-GGGTATTTTGGTAACTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACA
* *
47101344 AGGGGTATTTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACA
47101371 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
47101393 TGATCGAGGG
Statistics
Matches: 224, Mismatches: 31, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.01
26 19 0.08
27 201 0.90
28 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACA
Found at i:47101413 original size:27 final size:27
Alignment explanation
Indices: 47101276--47101417 Score: 144
Period size: 27 Copynumber: 5.3 Consensus size: 27
47101266 AGCATTTCGA
* *
47101276 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAA-CGAGGGGTATTTTAG
* * * *
47101303 TAATTTTACAAGCCAAGGGTATTTTGG
1 TAATTTTACAAACGAGGGGTATTTTAG
* *
47101330 TAACTTTACAAACCAGGGGTATTTTAG
1 TAATTTTACAAACGAGGGGTATTTTAG
* *
47101357 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACGAGGGGTATTTTAG
* *
47101384 TAATTTTACTGATCGA-GGGTATTTTAG
1 TAATTTTAC-AAACGAGGGGTATTTTAG
47101411 TAATTTT
1 TAATTTT
47101418 GTAAATTAAG
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.96
28 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACGAGGGGTATTTTAG
Found at i:47101441 original size:27 final size:27
Alignment explanation
Indices: 47101411--47101590 Score: 234
Period size: 27 Copynumber: 6.7 Consensus size: 27
47101401 GGTATTTTAG
* ** *
47101411 TAATTTTGTAAATTAAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGA
* *
47101438 TAATTCTGTAAATTGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGA
* * * *
47101465 TAATTCTATAAACCGATGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGA
* *
47101492 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGA
**
47101519 TAATTCTGTAAATCGAGGGTAAAAAAA
1 TAATTCTGTAAATCGAGGGTAAAATGA
47101546 TAATTCTGTAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAATGA
47101573 TAATTCTGTAAATCGAGG
1 TAATTCTGTAAATCGAGG
47101591 ATACTTTGGT
Statistics
Matches: 137, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGA
Found at i:47101612 original size:27 final size:27
Alignment explanation
Indices: 47101582--47101742 Score: 127
Period size: 27 Copynumber: 6.0 Consensus size: 27
47101572 ATAATTCTGT
*
47101582 AAATCGAGGATACTTT-GGTAATTTTAC
1 AAATCGAGGATA-TTTCAGTAATTTTAC
* **
47101609 AAATTGAGGCCATTTCAGTAATTTTAC
1 AAATCGAGGATATTTCAGTAATTTTAC
*
47101636 -AATCGACGATATTTC-GTTAATTTTAC
1 AAATCGAGGATATTTCAG-TAATTTTAC
* * *
47101662 AAGTCTG-GGGTACTTT-GGTAATTTTAC
1 AAATC-GAGGATA-TTTCAGTAATTTTAC
* * *
47101689 AAGTTGAAGG-TATTTCAATAATTTTAC
1 AAATCG-AGGATATTTCAGTAATTTTAC
*
47101716 AAATCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGATATTTCAGTAATTTTAC
47101743 TAAACTAAAG
Statistics
Matches: 107, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
25 1 0.01
26 30 0.28
27 69 0.64
28 7 0.07
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (27 bp):
AAATCGAGGATATTTCAGTAATTTTAC
Found at i:47101657 original size:53 final size:53
Alignment explanation
Indices: 47101583--47101742 Score: 155
Period size: 53 Copynumber: 3.0 Consensus size: 53
47101573 TAATTCTGTA
* * **
47101583 AATCGAGGATACTTT-GGTAATTTTACAAATTGAGGCCATTTCAGTAATTTTAC
1 AATCGAAGATA-TTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC
* * * *
47101636 AATCGACGATATTTCGTTAATTTTACAAGTCTG-GGGTACTTT-GGTAATTTTAC
1 AATCGAAGATATTTCGATAATTTTACAAAT-TGAGGGTA-TTTCAGTAATTTTAC
* * * *
47101689 AAGTTGAAGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
1 AA-TCGAAGATATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC
47101743 TAAACTAAAG
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
52 3 0.03
53 42 0.48
54 42 0.48
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (53 bp):
AATCGAAGATATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC
Found at i:47101676 original size:80 final size:81
Alignment explanation
Indices: 47101592--47101742 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 81
47101582 AAATCGAGGA
*
47101592 TACTTTGGTAATTTTACAAATTG-AGGCCATTTCAGTAATTTTAC-AATCGACGATATTTC-GTT
1 TACTTTGGTAATTTTACAAATTGAAGG-CATTTCAATAATTTTACAAATCGACGATATTTCAG-T
47101654 AATTTTACAAGTCTGGGG
64 AATTTTACAAGTCTGGGG
* * * *
47101672 TACTTTGGTAATTTTACAAGTTGAAGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAA
1 TACTTTGGTAATTTTACAAATTGAAGGCATTTCAATAATTTTACAAATCGACGATATTTCAGTAA
47101737 TTTTAC
66 TTTTAC
47101743 TAAACTAAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
80 37 0.59
81 25 0.40
82 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (81 bp):
TACTTTGGTAATTTTACAAATTGAAGGCATTTCAATAATTTTACAAATCGACGATATTTCAGTAA
TTTTACAAGTCTGGGG
Found at i:47101716 original size:54 final size:53
Alignment explanation
Indices: 47101600--47101742 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 53
47101590 GATACTTTGG
* ** * **
47101600 TAATTTTACAAATTGAGGCCATTTCAGTAATTTTACAATCGACGATATTTCGT
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGATATTTCAA
* * * *
47101653 TAATTTTACAAGTCTG-GGGTACTTT-GGTAATTTTACAAGTTGAAGGTATTTCAA
1 TAATTTTACAAATC-GAGGGTA-TTTCAGTAATTTTACAA-TCGAAGATATTTCAA
47101707 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
47101743 TAAACTAAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
53 31 0.42
54 42 0.58
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (53 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGATATTTCAA
Found at i:47101755 original size:27 final size:27
Alignment explanation
Indices: 47101680--47101756 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
47101670 GGTACTTTGG
* * *
47101680 TAATTTTACAAGTTGAAGGTATTTCAA
1 TAATTTTACAAATCGAAAGTATTTCAA
** *
47101707 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAAAGTATTTCAA
*
47101734 TAATTTTACTAAA-CTAAAGTATT
1 TAATTTTAC-AAATCGAAAGTATT
47101757 CTAAACAAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAAAGTATTTCAA
Found at i:47104053 original size:25 final size:25
Alignment explanation
Indices: 47103997--47104090 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
47103987 CTCTTTTAAT
* *
47103997 AACTGCGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
47104021 AACTGGGGCAAAGCGCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
47104046 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
47104071 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
47104091 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 18 0.28
25 46 0.72
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:47104325 original size:27 final size:27
Alignment explanation
Indices: 47104295--47104562 Score: 297
Period size: 27 Copynumber: 10.0 Consensus size: 27
47104285 AGGGAAAAAT
* * *
47104295 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47104322 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47104349 GGTATTTTTACCATACAAGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47104376 GGTGATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47104403 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47104430 AGTAATTCTACCCTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47104456 GGTAATTCTACCCTAC-AGGTTTATTTT
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
47104483 AGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47104510 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47104537 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
47104563 TGATAGTTTA
Statistics
Matches: 206, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
26 26 0.13
27 178 0.86
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47104505 original size:134 final size:134
Alignment explanation
Indices: 47104312--47104562 Score: 378
Period size: 134 Copynumber: 1.9 Consensus size: 134
47104302 TTACCCCACA
* * *
47104312 AGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTTTACCATACAAGGGTATTT-A
1 AGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCATACAAGGGTATTTCA
* * *
47104376 GGTGATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
66 -GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
47104441 CCTAT
130 CCTAT
* ** * *
47104446 AGGGTATTTCGGTAATTCTACCCTACAGGTTTATTTTAGTAATTCTACCCTACATGGGTATTTCA
1 AGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCATACAAGGGTATTTCA
*
47104511 GTAATTCTACCCTACAGGGGTATTTTGATAATTCTACCCTACAGGGGTATTT
66 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
47104563 TGATAGTTTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
134 103 0.99
135 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (134 bp):
AGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCATACAAGGGTATTTCA
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTAT
Found at i:47104613 original size:27 final size:27
Alignment explanation
Indices: 47104525--47104760 Score: 162
Period size: 27 Copynumber: 8.8 Consensus size: 27
47104515 TTCTACCCTA
* **
47104525 CAGGGGTATTTTGATAATTCTACCCTA-
1 CAGGGGTATTTTGATAATTTTA-CAAAC
* **
47104552 CAGGGGTATTTTGAT-AGTTTACAAGT
1 CAGGGGTATTTTGATAATTTTACAAAC
* * * *
47104578 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAC
*
47104605 CAGGGGTATTTT-AGTAATTTTACAAGC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
*
47104632 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
*
47104659 CAGGGGTATTTT-AGTAATTTTATAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
* * ** *
47104686 TAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGATAATTTTACAAAC
* **
47104713 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGATAATTTTACAAAC
**
47104740 CAAAGGTATTTT-AGTAATTTT
1 CAGGGGTATTTTGA-TAATTTT
47104761 GTAAATCGAG
Statistics
Matches: 164, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
25 2 0.01
26 17 0.10
27 144 0.88
28 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAC
Found at i:47104650 original size:54 final size:54
Alignment explanation
Indices: 47104583--47104760 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
47104573 CAAGTCGAGA
* * * *
47104583 GTATTTCGATAATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACCAGGG
* * *
47104637 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACTAGGG
1 GTATTTTGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACCAGGG
** * ** **
47104691 GTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACCAAAG
1 GTATTTTGGTAATTTTACAAATCAG-GGGTATTTTAGTAATTTTACAAACCAGGG
*
47104745 GTATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
47104761 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 106 0.99
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACCAGGG
Found at i:47104696 original size:81 final size:81
Alignment explanation
Indices: 47104606--47104765 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
47104596 TTCACAAATC
**
47104606 AGGGGTATTTTAGTAATTTTAC-AAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 AGGGGTATTTTAGTAATTTTACTAAGCCA-GGGTATTTTGGTAATTTTACAAACCAAAGGTATTT
47104670 TAGTAATTTTATAAACT
65 TAGTAATTTTATAAACT
* * * * **
47104687 AGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTT
1 AGGGGTATTTTAGTAATTTTACTAAGCCAGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
*
47104752 AGTAATTTTGTAAA
66 AGTAATTTTATAAA
47104766 TCGAGGGTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 66 0.96
82 3 0.04
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTAGTAATTTTACTAAGCCAGGGTATTTTGGTAATTTTACAAACCAAAGGTATTTT
AGTAATTTTATAAACT
Found at i:47104774 original size:27 final size:27
Alignment explanation
Indices: 47104605--47104765 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
47104595 TTTCACAAAT
* *
47104605 CAGGGGTATTTTAGTAATTTTACAAGC
1 CAGGGGTATTTTAGTAATTTTATAAAC
* *
47104632 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTAGTAATTTTATAAAC
47104659 CAGGGGTATTTTAGTAATTTTATAAAC
1 CAGGGGTATTTTAGTAATTTTATAAAC
* * * *
47104686 TAGGGGTATTTTGGTAATTTTACTGATC
1 CAGGGGTATTTTAGTAATTTTA-TAAAC
* * *
47104714 GA-GGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTAGTAATTTTATAAAC
** *
47104740 CAAAGGTATTTTAGTAATTTTGTAAA
1 CAGGGGTATTTTAGTAATTTTATAAA
47104766 TCGAGGGTAA
Statistics
Matches: 117, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.03
27 109 0.93
28 4 0.03
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTAGTAATTTTATAAAC
Found at i:47104783 original size:81 final size:81
Alignment explanation
Indices: 47104635--47104785 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
47104625 TACAAGCCAG
** * ****
47104635 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTATAAACGAGGGGTAAAACGG
47104700 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
** *
47104716 GGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTTGTAAATCGA-GGGTAAAACG
1 GGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTATAAA-CGAGGGGTAAAACG
47104780 GTAATT
65 GTAATT
47104786 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 57 0.97
82 2 0.03
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTATAAACGAGGGGTAAAACGG
TAATTTTACTGATCGA
Found at i:47104796 original size:81 final size:81
Alignment explanation
Indices: 47104711--47104977 Score: 219
Period size: 81 Copynumber: 3.3 Consensus size: 81
47104701 AATTTTACTG
* * * *** * *
47104711 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
47104776 AACGGTAATTCTGTAA
66 AACGGTAATTCTGTAA
* *** * * * * *
47104792 ATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
* *
47104857 AATGGTAATTCTTTAA
66 AACGGTAATTCTGTAA
*** * * * * * * * * *
47104873 ATCGAGGGTAAAACGATAACTCTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
*
47104938 AACGATAATTCTGTAA
66 AACGGTAATTCTGTAA
* * *
47104954 ATCAATGGTACTTTGGTAATTTTA
1 ATCGAGGGTAATTTGGTAATTTTA
47104978 CAAATTGAGG
Statistics
Matches: 147, Mismatches: 39, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
81 147 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
AACGGTAATTCTGTAA
Found at i:47104963 original size:27 final size:27
Alignment explanation
Indices: 47104754--47104956 Score: 298
Period size: 27 Copynumber: 7.5 Consensus size: 27
47104744 GGTATTTTAG
* *
47104754 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
47104781 TAATTCTGTAAATCGAAGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * *
47104808 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * *
47104835 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
47104862 TAATTCTTTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
47104889 TAACTCTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACGA
47104916 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
47104943 TAATTCTGTAAATC
1 TAATTCTGTAAATC
47104957 AATGGTACTT
Statistics
Matches: 161, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:47104982 original size:27 final size:27
Alignment explanation
Indices: 47104960--47105111 Score: 148
Period size: 27 Copynumber: 5.7 Consensus size: 27
47104950 GTAAATCAAT
*
47104960 GGTACTTT-GGTAATTTTACAAATTGAG
1 GGTA-TTTCGGTAATTTTACAAATCGAG
* * *
47104987 GGCATTTCAGTAATTTTAC-AATCGAC
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * * *
47105013 AGAATTTCGGTAATTTTATAAACCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
47105040 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAG
*
47105067 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
47105094 GGTATTTCAGTAATTTTA
1 GGTATTTCGGTAATTTTA
47105112 GTAAACTAAA
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 26 0.26
27 71 0.71
28 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:47104988 original size:54 final size:54
Alignment explanation
Indices: 47104753--47104988 Score: 242
Period size: 54 Copynumber: 4.4 Consensus size: 54
47104743 AGGTATTTTA
* * *
47104753 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAA-GGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATC-AAGGGTAAAATG
* * * * * *
47104807 ATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAATG
* * **
47104861 GTAATTCTT-TAAATCGAGGGTAAAACGATAACTCTGTAAATCGAGGGTAAAACA
1 GTAATT-TTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAATG
* * * * ***
47104915 ATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAATGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAATG
* *
47104969 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
47104989 CATTTCAGTA
Statistics
Matches: 149, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.01
54 146 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAATG
Found at i:47105047 original size:80 final size:82
Alignment explanation
Indices: 47104960--47105117 Score: 230
Period size: 80 Copynumber: 2.0 Consensus size: 82
47104950 GTAAATCAAT
* * *
47104960 GGTACTTTGGTAATTTTACAAATTGAGGGCATTTCAGTAATTTTAC-AATCGACAGAATTTCGGT
1 GGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTACAAATCGACAGAATTTCAGT
47105024 AATTTTA-TAAACCGGG
66 AATTTTAGTAAACCGGG
* * ** *
47105040 GGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGT
1 GGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTACAAATCGACAGAATTTCAGT
47105105 AATTTTAGTAAAC
66 AATTTTAGTAAAC
47105118 TAAAGTATTC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 42 0.62
81 21 0.31
82 5 0.07
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (82 bp):
GGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTACAAATCGACAGAATTTCAGT
AATTTTAGTAAACCGGG
Found at i:47105126 original size:54 final size:53
Alignment explanation
Indices: 47104969--47105111 Score: 171
Period size: 54 Copynumber: 2.7 Consensus size: 53
47104959 TGGTACTTTG
* * * * *
47104969 GTAATTTTACAAATTGAGGGCATTTCAGTAATTTTACAATCGACAGAATTTCG
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAAGTATTTCA
* * * * *
47105022 GTAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGAAAGTATTTCA
47105076 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
47105112 GTAAACTAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
53 32 0.44
54 41 0.56
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (53 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAAGTATTTCA
Found at i:47106450 original size:11 final size:11
Alignment explanation
Indices: 47106434--47106463 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
47106424 CCCCAATTTT
*
47106434 GAAAAAAGAAA
1 GAAAAAAAAAA
47106445 GAAAAAAAAAA
1 GAAAAAAAAAA
47106456 GAAAAAAA
1 GAAAAAAA
47106464 TAACAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:47107427 original size:25 final size:25
Alignment explanation
Indices: 47107399--47107518 Score: 170
Period size: 25 Copynumber: 4.8 Consensus size: 25
47107389 TTCTTTTAAT
*
47107399 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
47107424 AACTGGGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
47107449 AACTTGGGCAAAG-CCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTT-GGTA
**
47107474 AACTAAGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
47107499 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
47107519 AGCACTTCCT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
24 6 0.07
25 70 0.84
26 7 0.08
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:47107755 original size:27 final size:27
Alignment explanation
Indices: 47107725--47107942 Score: 204
Period size: 27 Copynumber: 8.1 Consensus size: 27
47107715 GGAAAAATGG
* * *
47107725 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* ** *
47107752 TAATTCTATCCTACTGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
47107779 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
47107806 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * * *
47107833 TAATTCTACGCTACAGGGGCATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
47107860 TAATTCTACCCTAC-AGGGTTATTTCGG
1 TAATTCTACCCTACAAGGG-TATTTCGA
* ** * *
47107887 TAATTTTACCCTACTGGGGTTTTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
47107914 TAATTCTACCCTACAGGGGTATTTTGA
1 TAATTCTACCCTACAAGGGTATTTCGA
47107941 TA
1 TA
47107943 TTTTACAAAT
Statistics
Matches: 157, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 3 0.02
27 151 0.96
28 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:47107795 original size:54 final size:53
Alignment explanation
Indices: 47107727--47107948 Score: 255
Period size: 54 Copynumber: 4.1 Consensus size: 53
47107717 AAAAATGGTA
* * * * *
47107727 ATTTTACCCCACAAGGGTATCTCGATAATTCTATCCTACTGGGGTATTTCGGT
1 ATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
**
47107780 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAAT
1 ATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * * *
47107834 AATTCTACGCTACAGGGGCATTTTGGTAATTCTACCCTACAGGGTTATTTCGGT
1 -ATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
** * * *
47107888 AATTTTACCCTACTGGGGTTTTTCGGTAATTCTACCCTACAGGGGTATTTTGAT
1 -ATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
47107942 ATTTTAC
1 ATTTTAC
47107949 AAATCAAGAG
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 11 0.08
54 129 0.90
55 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (53 bp):
ATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:47107867 original size:81 final size:80
Alignment explanation
Indices: 47107723--47107939 Score: 283
Period size: 81 Copynumber: 2.7 Consensus size: 80
47107713 GGGGAAAAAT
* * * * * *
47107723 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTATCCTACTGGGGTATTTCGGTATTTCTAC
1 GGTAATTTTACCCTACAGGGGTATTTCGATAATTCTA-CCTACAGGGGTATTTTGGTAATTCTAC
47107788 CCTACAAGGG-TATTTC
65 CCTAC-AGGGTTATTTC
* * *
47107804 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACGCTACAGGGGCATTTTGGTAATTCTAC
1 GGTAATTTTACCCTACAGGGGTATTTCGATAATTCTAC-CTACAGGGGTATTTTGGTAATTCTAC
47107869 CCTACAGGGTTATTTC
65 CCTACAGGGTTATTTC
* * *
47107885 GGTAATTTTACCCTACTGGGGTTTTTCGGTAATTCTACCCTACAGGGGTATTTTG
1 GGTAATTTTACCCTACAGGGGTATTTCGATAATTCTA-CCTACAGGGGTATTTTG
47107940 ATATTTTACA
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 5 0.04
81 112 0.95
82 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (80 bp):
GGTAATTTTACCCTACAGGGGTATTTCGATAATTCTACCTACAGGGGTATTTTGGTAATTCTACC
CTACAGGGTTATTTC
Found at i:47107990 original size:27 final size:27
Alignment explanation
Indices: 47107931--47108081 Score: 130
Period size: 27 Copynumber: 5.6 Consensus size: 27
47107921 ACCCTACAGG
47107931 GGTATTTTGAT-ATTTTACAAATCA-A
1 GGTATTTTGATAATTTTACAAATCAGA
* * *
47107956 GAGCATTTCGATAATTTCACAAATCAGA
1 G-GTATTTTGATAATTTTACAAATCAGA
* * *
47107984 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGATAATTTTACAAATCAGA
* *
47108011 GGTATTTT-AGTAATTTTACAAACCAGG
1 GGTATTTTGA-TAATTTTACAAATCAGA
* * **
47108038 GGTATCTTGGTAATTTTACTGATC-GA
1 GGTATTTTGATAATTTTACAAATCAGA
*
47108064 GGGTATTTTGGTAATTTT
1 -GGTATTTTGATAATTTT
47108082 TTAAACTAAG
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 91 0.88
28 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTATTTTGATAATTTTACAAATCAGA
Found at i:47108068 original size:54 final size:54
Alignment explanation
Indices: 47107927--47108108 Score: 154
Period size: 54 Copynumber: 3.4 Consensus size: 54
47107917 TTCTACCCTA
* * * * * * * *
47107927 CAGGGGTATTTTGAT-ATTTTACAAATCAAGAGCA-TTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAG-TAATTTTACAAAC
*
47107980 CAGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAC
* ** * * **
47108034 CAGGGGTATCTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTTTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAAC
* * *
47108088 TAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
47108109 GTAAATCGAT
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
53 14 0.13
54 87 0.83
55 4 0.04
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAC
Found at i:47108122 original size:27 final size:27
Alignment explanation
Indices: 47107976--47108230 Score: 133
Period size: 27 Copynumber: 9.4 Consensus size: 27
47107966 ATAATTTCAC
**
47107976 AAATC-AGAGGTATTTTGGTAATTTTAC
1 AAATCGAG-GGTATTTTGGTAATTTTGT
* * **
47108003 AAA-CCAGGGGTATTTTAGTAATTTTAC
1 AAATCGA-GGGTATTTTGGTAATTTTGT
* * *
47108030 AAA-CCAGGGGTATCTTGGTAATTTTACT
1 AAATCGA-GGGTATTTTGGTAATTTT-GT
* *
47108058 -GATCGAGGGTATTTTGGTAATTTTTT
1 AAATCGAGGGTATTTTGGTAATTTTGT
* *
47108084 AAA-CTAAGGGTATTTTAGTAATTTTGT
1 AAATC-GAGGGTATTTTGGTAATTTTGT
* **** *
47108111 AAATCGATGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTATTTTGGTAATTTTGT
* *** * * *
47108138 AAATCGATGGTAAAATGATAATTCTAT
1 AAATCGAGGGTATTTTGGTAATTTTGT
*** *
47108165 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAATCGAGGGTATTTTGGTAATTTTGT
***
47108192 AAATCGAGGGTAAAATGGTAATTTTGT
1 AAATCGAGGGTATTTTGGTAATTTTGT
47108219 AAATCGAGGGTA
1 AAATCGAGGGTA
47108231 AAACGGTATA
Statistics
Matches: 193, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.02
27 186 0.96
28 4 0.02
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (27 bp):
AAATCGAGGGTATTTTGGTAATTTTGT
Found at i:47108231 original size:27 final size:27
Alignment explanation
Indices: 47108101--47108238 Score: 204
Period size: 27 Copynumber: 5.1 Consensus size: 27
47108091 GGGTATTTTA
* * *
47108101 GTAATTTTGTAAATCGATGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
47108128 GTAATTCTGTAAATCGATGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
47108155 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
47108182 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
47108209 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
47108236 GTA
1 GTA
47108239 TAGCCCATAA
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:47108533 original size:24 final size:24
Alignment explanation
Indices: 47108446--47108539 Score: 143
Period size: 25 Copynumber: 3.8 Consensus size: 24
47108436 CTCTTTTAAT
47108446 AACTGCGGCAAAGCCCTTTTCGGTA
1 AACTG-GGCAAAGCCCTTTTCGGTA
*
47108471 AACAGGGGCAAAGCCCTTTTCGGTA
1 AAC-TGGGCAAAGCCCTTTTCGGTA
*
47108496 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACT-GGGCAAAGCCCTTTTCGGTA
47108521 AACTGGGCAAAGCCCTTTT
1 AACTGGGCAAAGCCCTTTT
47108540 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
24 15 0.23
25 48 0.75
26 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (24 bp):
AACTGGGCAAAGCCCTTTTCGGTA
Found at i:47108868 original size:81 final size:80
Alignment explanation
Indices: 47108745--47108984 Score: 354
Period size: 81 Copynumber: 3.0 Consensus size: 80
47108735 GGGAAAAATA
* * * * *
47108745 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTC-GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
*
47108810 CTACAAGGGTATTTCG
65 CTACAGGGGTATTTCG
* *
47108826 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTC-GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
*
47108891 CTATAGGGGTATTTCG
65 CTACAGGGGTATTTCG
* * *
47108907 GTAATTCTACCCTATAGGGTTATTTCGTATTTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 GTAATTCTACCCTACAGGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
47108972 TACAGGGGTATTT
66 TACAGGGGTATTT
47108985 TGATATTTTA
Statistics
Matches: 143, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 48 0.34
81 95 0.66
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
TACAGGGGTATTTCG
Found at i:47108989 original size:27 final size:27
Alignment explanation
Indices: 47108746--47108989 Score: 321
Period size: 27 Copynumber: 9.1 Consensus size: 27
47108736 GGAAAAATAG
* * * * *
47108746 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
47108773 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
47108800 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
47108827 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
47108853 GTAATTCTACCCTACAAGGGTATTTCAA
1 -TAATTCTACCCTACAGGGGTATTTCGA
* *
47108881 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
47108908 TAATTCTACCCTATAGGGTTATTTCG-
1 TAATTCTACCCTACAGGGGTATTTCGA
*
47108934 TATTTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
47108961 TAATTCTACCCTACAGGGGTATTTTGA
1 TAATTCTACCCTACAGGGGTATTTCGA
47108988 TA
1 TA
47108990 TTTTACAAAT
Statistics
Matches: 192, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
26 23 0.12
27 168 0.88
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:47109128 original size:53 final size:52
Alignment explanation
Indices: 47108977--47109179 Score: 185
Period size: 53 Copynumber: 3.8 Consensus size: 52
47108967 TACCCTACAG
* * * * * **
47108977 GGGTATTTTGAT-ATTTTACAAATCGAGTGTATTTAGATAATTTCACAAA-TTA
1 GGGTATTTTGGTAATTTTACAAA-CCAGGGTATTTTGGTAATTT-ACAAACCAA
* *
47109029 GGGATATTTTGGTAATTTTACAAGCCATGGTATTTTGGTAATTTTACAAACCAA
1 GGG-TATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAA-TTTACAAACCAA
* * ** * *
47109083 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCA-GGGTATTTTGGTAATTTACAAACCAA
* *
47109136 GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTT
47109180 TGTAAATCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
52 3 0.02
53 91 0.73
54 30 0.24
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (52 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTACAAACCAA
Found at i:47109180 original size:80 final size:80
Alignment explanation
Indices: 47108977--47109180 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
47108967 TACCCTACAG
* * * * * *
47108977 GGGTATTTTGAT-ATTTTACAAATCGAGTGTA-TTTAGATAATTTCACAAATTAGGGATATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACTAGGGATATTTTG
47109040 GTAATTTTACAAGCCA
65 GTAATTTTACAAGCCA
* *
47109056 TGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGATATTTTGG
* * *
47109121 TAA-TTTACTGATCGA
66 TAATTTTAC-AAGCCA
*
47109136 GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
47109181 GTAAATCGAG
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 15 0.14
80 89 0.82
81 5 0.05
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGATATTTTGG
TAATTTTACAAGCCA
Found at i:47109181 original size:27 final size:27
Alignment explanation
Indices: 47108977--47109180 Score: 191
Period size: 27 Copynumber: 7.7 Consensus size: 27
47108967 TACCCTACAG
* * *
47108977 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * **
47109003 GTGTATTTAGATAATTTCACAAA-TTA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
47109029 GGGATATTTTGGTAATTTTACAAGCC-A
1 GGG-TATTTTGGTAATTTTACAAACCAA
*
47109056 TGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
47109083 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
47109110 GGGTATTTTGGTAA-TTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
47109136 GGGTATTTTGGTAATTTTGCAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
47109163 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
47109181 GTAAATCGAG
Statistics
Matches: 143, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
26 54 0.38
27 89 0.62
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:47109192 original size:27 final size:27
Alignment explanation
Indices: 47109057--47109220 Score: 134
Period size: 27 Copynumber: 6.1 Consensus size: 27
47109047 TACAAGCCAT
* * *
47109057 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTGCAAATCAAG
* *
47109084 GGTATTTTAGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTGCAAATC-AAG
* * ** *
47109111 GGTATTTTGGTAA-TTTACTGATCGAG
1 GGTATTTTAGTAATTTTGCAAATCAAG
* *
47109137 GGTATTTTGGTAATTTTGCAAACCAAG
1 GGTATTTTAGTAATTTTGCAAATCAAG
* *
47109164 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTGCAAATCAAG
**** *
47109191 GGTAAAACAGTAATTTTGTAAATCAAG
1 GGTATTTTAGTAATTTTGCAAATCAAG
47109218 GGT
1 GGT
47109221 TAAACGATAA
Statistics
Matches: 113, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 21 0.19
27 92 0.81
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTGCAAATCAAG
Found at i:47109204 original size:80 final size:80
Alignment explanation
Indices: 47109057--47109206 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 80
47109047 TACAAGCCAT
* *****
47109057 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTAAAACAGT
47109122 AATTTACTGATCGAG
66 AATTTACTGATCGAG
* **
47109137 GGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAGTAATTTTGTAAATCGA-GGGTAAAACAG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAA-CGAGGGGTAAAACAG
47109201 TAATTT
65 TAATTT
47109207 TGTAAATCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 58 0.97
81 2 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTAAAACAGT
AATTTACTGATCGAG
Found at i:47109225 original size:27 final size:27
Alignment explanation
Indices: 47109172--47109356 Score: 167
Period size: 27 Copynumber: 6.9 Consensus size: 27
47109162 AGGGTATTTT
47109172 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
47109199 AGTAATTTTGTAAATCAAGGGTTAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
47109226 -GATAATTCTATAAATCGAGGGTAAAAT
1 AG-TAATTTTGTAAATCGAGGGTAAAAC
* * * * *
47109253 GGTAATTCTATAAATCGAGGCTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * * * *
47109280 GGTAATTCTATAAATTGTGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
47109307 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
47109334 -GATAATTCTGTAAATCGATGGTA
1 AG-TAATTTTGTAAATCGAGGGTA
47109357 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 135 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.31
Consensus pattern (27 bp):
AGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:47109232 original size:54 final size:54
Alignment explanation
Indices: 47109182--47109356 Score: 233
Period size: 54 Copynumber: 3.2 Consensus size: 54
47109172 AGTAATTTTG
* * * *
47109182 TAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTTAAACGATAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
** * * *
47109236 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGCTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
* * *
47109290 TAAATTGTGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
*
47109344 TAAATCGATGGTA
1 TAAATCGAGGGTA
47109357 CTTTGGTAAT
Statistics
Matches: 101, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
Found at i:47109267 original size:81 final size:81
Alignment explanation
Indices: 47109173--47109356 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
47109163 GGGTATTTTA
* * * *
47109173 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTTAAAC-GATAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAG-TAATTCTAT
*
47109237 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAACG
* * ** ***
47109254 GTAATTCTATAAATCGAGGCTAAAATGGTAATTCTATAAATTGTGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
47109319 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* *
47109335 ATAATTCTGTAAATCGATGGTA
1 GTAATTCTGTAAATCGAGGGTA
47109357 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 85 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:47109364 original size:81 final size:81
Alignment explanation
Indices: 47109228--47109377 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
47109218 GGTTAAACGA
* * *
47109228 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGCTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGCTAAAATGGTAATTCTACAA
47109293 ATTGTGGGTAAAACAG
66 ATTGTGGGTAAAACAG
* *** *
47109309 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGATGG-TACTTTGGTAATTTTACA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGA-GGCTAAAATGGTAATTCTACA
47109373 AATTG
65 AATTG
47109378 AGGGCATTTC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 58 0.97
82 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (81 bp):
TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGCTAAAATGGTAATTCTACAA
ATTGTGGGTAAAACAG
Found at i:47109375 original size:27 final size:27
Alignment explanation
Indices: 47109345--47109480 Score: 132
Period size: 27 Copynumber: 5.0 Consensus size: 27
47109335 ATAATTCTGT
* *
47109345 AAATCGATGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* *
47109372 AAATTGAGGGCATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* ** *
47109399 -AATTGACAGTATTTCGGTGGTAATTTTAC
1 AAATCGAGGGTATTTC---AGTAATTTTAC
* *
47109428 AAGTCGAAGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
47109455 AAATCGAGGGTATTTCAGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTA
47109481 GTAAACTAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
26 15 0.17
27 53 0.60
29 10 0.11
30 11 0.12
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:47114985 original size:7 final size:7
Alignment explanation
Indices: 47114972--47115051 Score: 124
Period size: 7 Copynumber: 11.0 Consensus size: 7
47114962 TTAAATATTA
47114972 AATTTTT
1 AATTTTT
47114979 AAGTTTTTT
1 AA--TTTTT
*
47114988 ATTTTTT
1 AATTTTT
47114995 AATTTTT
1 AATTTTT
47115002 AATTTTT
1 AATTTTT
47115009 AATTTTT
1 AATTTTT
47115016 AATTTTT
1 AATTTTT
47115023 AATTTTT
1 AATTTTT
47115030 AATTTTT
1 AATTTTT
47115037 AATTTTT
1 AATTTTT
47115044 AAATTTTT
1 -AATTTTT
47115052 TTGAATATTT
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
7 55 0.81
8 7 0.10
9 6 0.09
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (7 bp):
AATTTTT
Found at i:47116074 original size:7 final size:7
Alignment explanation
Indices: 47116062--47116243 Score: 73
Period size: 7 Copynumber: 25.6 Consensus size: 7
47116052 CTAATTAATA
47116062 TAAACCC
1 TAAACCC
47116069 TAAACCC
1 TAAACCC
* *
47116076 TTATCCC
1 TAAACCC
* *
47116083 TTATCTCC
1 TAAAC-CC
47116091 TAAACCC
1 TAAACCC
47116098 TAAACCC
1 TAAACCC
*
47116105 T-ATCCC
1 TAAACCC
*
47116111 TATAAACCT
1 --TAAACCC
***
47116120 TAAATTA
1 TAAACCC
* *
47116127 TAAAACA
1 TAAACCC
47116134 TAAACCC
1 TAAACCC
47116141 TAAACCCC
1 TAAA-CCC
47116149 T-AACCC
1 TAAACCC
47116155 TTAAACCC
1 -TAAACCC
*
47116163 TAACCCC
1 TAAACCC
*
47116170 TAAACCT
1 TAAACCC
47116177 TAAACCC
1 TAAACCC
* *
47116184 -CAACACT
1 TAAAC-CC
*
47116191 TAAACCA
1 TAAACCC
*
47116198 TAAACCA
1 TAAACCC
** *
47116205 TAAGTCA
1 TAAACCC
*
47116212 TAAACCA
1 TAAACCC
**
47116219 TAAACTA
1 TAAACCC
47116226 TAAACCC
1 TAAACCC
*
47116233 TAAACCT
1 TAAACCC
47116240 TAAA
1 TAAA
47116244 ATAGTAACTC
Statistics
Matches: 136, Mismatches: 30, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
6 10 0.07
7 105 0.77
8 18 0.13
9 3 0.02
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:47116105 original size:22 final size:20
Alignment explanation
Indices: 47116066--47116112 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
47116056 TTAATATAAA
* *
47116066 CCCTAAACCCTTATCCCTTAT
1 CCCTAAACCCTAAACCC-TAT
47116087 CTCCTAAACCCTAAACCCTAT
1 C-CCTAAACCCTAAACCCTAT
47116108 CCCTA
1 CCCTA
47116113 TAAACCTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.17
21 5 0.22
22 14 0.61
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (20 bp):
CCCTAAACCCTAAACCCTAT
Found at i:47116169 original size:21 final size:22
Alignment explanation
Indices: 47116134--47116243 Score: 84
Period size: 21 Copynumber: 5.2 Consensus size: 22
47116124 TTATAAAACA
*
47116134 TAAACCCTAAACCCCTAACCCT
1 TAAACCCTAAACCCCTAAACCT
47116156 TAAACCCT-AACCCCTAAACCT
1 TAAACCCTAAACCCCTAAACCT
* * * *
47116177 TAAACCC-CAACACTTAAACCA
1 TAAACCCTAAACCCCTAAACCT
* ** * *
47116198 TAAACCAT-AAGTCATAAACCA
1 TAAACCCTAAACCCCTAAACCT
**
47116219 TAAACTATAAA-CCCTAAACCT
1 TAAACCCTAAACCCCTAAACCT
47116240 TAAA
1 TAAA
47116244 ATAGTAACTC
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
21 63 0.86
22 10 0.14
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (22 bp):
TAAACCCTAAACCCCTAAACCT
Found at i:47116286 original size:7 final size:7
Alignment explanation
Indices: 47116191--47116292 Score: 75
Period size: 7 Copynumber: 14.4 Consensus size: 7
47116181 CCCCAACACT
47116191 TAAACCA
1 TAAACCA
47116198 TAAACCA
1 TAAACCA
**
47116205 TAAGTCA
1 TAAACCA
47116212 TAAACCA
1 TAAACCA
*
47116219 TAAACTA
1 TAAACCA
*
47116226 TAAACCC
1 TAAACCA
*
47116233 TAAACCT
1 TAAACCA
47116240 TAAA--A
1 TAAACCA
47116245 TAGTAACTCA
1 TA--AAC-CA
47116255 TAAACCA
1 TAAACCA
* *
47116262 TATACCC
1 TAAACCA
47116269 TAAATCC-
1 TAAA-CCA
47116276 TAAACCA
1 TAAACCA
*
47116283 TAAACTA
1 TAAACCA
47116290 TAA
1 TAA
47116293 TGATAATTAA
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
5 2 0.03
6 2 0.03
7 63 0.84
8 5 0.07
10 3 0.04
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:47116713 original size:40 final size:40
Alignment explanation
Indices: 47116594--47116734 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 40
47116584 AAAGTTTTTT
* * ** * * *
47116594 GCGGCGTTTTTGATAAAGCGCCACTAAAGCTTAATCTATA
1 GCGGCGTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATA
* * * * *
47116634 GTGACGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATA
1 GCGGCGTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATA
* * *
47116674 GCGGTGTTTTTTAAAAAGTGCTGCTAATGCTCAATCTATA
1 GCGGCGTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATA
47116714 GCGGCGTTTTTTTTAAAAAGC
1 GCGGCG--TTTTTTAAAAAGC
47116735 ACAAATAATG
Statistics
Matches: 78, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
40 66 0.85
42 12 0.15
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCGCTGCTAATGCTCAACCTATA
Found at i:47116902 original size:40 final size:40
Alignment explanation
Indices: 47116794--47116918 Score: 169
Period size: 40 Copynumber: 3.1 Consensus size: 40
47116784 TTTTTTGCGT
* * * *
47116794 CGTTTTTCAAAAAGCGCCTCTAATGGTCAACCTATAGCGG
1 CGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGG
* *
47116834 CGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
1 CGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGG
* *
47116874 CGTTTTTCAAAAAGCACCACTAATGCTCGATTTATAGCGG
1 CGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGG
*
47116914 TGTTT
1 CGTTT
47116919 ATTATCCAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (40 bp):
CGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGG
Found at i:47119902 original size:29 final size:29
Alignment explanation
Indices: 47119868--47119940 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
47119858 CTACTTGTGT
*
47119868 CATGTGGGCTACACAG-GCATGTGTGAGGC
1 CATGTGGGCTACAC-GTACATGTGTGAGGC
*
47119897 CATGTGGGCTACACGTACGTGTGTGAGGC
1 CATGTGGGCTACACGTACATGTGTGAGGC
*
47119926 CATGTGGGCCACACG
1 CATGTGGGCTACACG
47119941 GGTTGGCCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.19, C:0.23, G:0.37, T:0.21
Consensus pattern (29 bp):
CATGTGGGCTACACGTACATGTGTGAGGC
Found at i:47123687 original size:20 final size:20
Alignment explanation
Indices: 47123664--47123702 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47123654 CTAAAACCAA
* *
47123664 GCTAAATTACCCATAACCCT
1 GCTAAACTACCCAAAACCCT
47123684 GCTAAACTACCCAAAACCC
1 GCTAAACTACCCAAAACCC
47123703 GGTACCCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.38, G:0.05, T:0.18
Consensus pattern (20 bp):
GCTAAACTACCCAAAACCCT
Found at i:47128026 original size:16 final size:14
Alignment explanation
Indices: 47127994--47128046 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
47127984 ATCGATACCT
47127994 TTTGCATTCATGCA
1 TTTGCATTCATGCA
47128008 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
47128024 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
47128037 TTTGCATTCA
1 TTTGCATTCA
47128047 AAATTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:47133247 original size:132 final size:131
Alignment explanation
Indices: 47133097--47134672 Score: 496
Period size: 132 Copynumber: 11.9 Consensus size: 131
47133087 ATAGCAGATT
* * *
47133097 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCGGATTTGGCATCCTTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
* *
47133162 GAACAGATCGAAGATAGCAGATCTGGCACTCC-TGTGCTTACAGCGAAGCAGATTGAAGATTTCA
66 GAACAAATCGAAGATAGCAGATCTGGCA-TCCTTGTGCTTACAGCGAA-CAGATCGAAGATTTCA
47133226 GCA
129 GCA
*
47133229 TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
* * * * **
47133294 GAACAAATCGAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAG-
66 GAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATTTCAGC
47133358 A
131 A
* * * * * * ** * *
47133359 TCTGACA-CTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCTTAG-CATCCCTGTGTTTA
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTA
* * * * * * * *
47133422 TAGGGAACAAGTTG-AGAATAGCAGATTTGGTATCCTTGTGATTATAGGGAACAGATCGAAGATA
62 TAGGGAACAAATCGAAG-ATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATT
*
47133486 GCAG-A
126 TCAGCA
* * * * * ** *
47133491 TCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGTTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* * * * * * *
47133553 ATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGAT
61 ATAGGGAACAAATCGAAG-ATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGAT
**
47133617 AGCAG-A
125 TTCAGCA
* * * * * * *** * *
47133623 TCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA--TGGCATCCCTATGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTTA
* * * * * * * **
47133686 TAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAG
62 TAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATTT
47133751 CAG-A
127 CAGCA
* * * ** * * *** *
47133755 TCTGACA-CTCCTGTGCTTACAATGAAGCAGATTGAAGATTTTAGCA--TGGCATCCCTGTGTTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* * * * * * * * *
47133817 ATAGGGAACAAGTTGAGGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATA
61 ATAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATT
*
47133882 GCAG-A
126 TCAGCA
* * * * * * * *** *
47133887 TCTGACATTCATGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA--TGGCATCCCTGTGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTTA
* * * * ** * * *
47133950 TAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAACAGATCGAAGATAG
62 TAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGAT-T
47134015 T-AG-A
126 TCAGCA
* * * * * * *** * * *
47134019 TCTGACA-CTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTTAGCA--TGGCATCCCTATATTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* * * * * * * * *
47134081 ATAGGGAACAAGTTGAAGATAGCAAATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATA
61 ATAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATT
*
47134146 GCAG-A
126 TCAGCA
* * * ** * * *** *
47134151 TCTGACA-CTCCTGTGCTTACAATGAAGCAGATTGAAGATTTTAGCA--TGGCATCCCTGTGTTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* * * * * * * * * *
47134213 ATAGGGAACAAGTTGAGGATAGCATATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATA
61 ATAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATT
*
47134278 GCAG-A
126 TCAGCA
* * * * * * * *** *
47134283 TCTGACATTCATGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA--TGGCATCCCTGTGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTTA
* * * * ** * * *
47134346 TAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAACAGATCGAAGATAG
62 TAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGAT-T
47134411 T-AG-A
126 TCAGCA
* * * * * *** * * *
47134415 TCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCA--TGGCATCCCTATATTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* * * * * * * * *
47134477 ATAGGGAACAAGTTGAAGATAGCAAATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATA
61 ATAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATT
*
47134542 GCAG-A
126 TCAGCA
* * * * * * * ** *
47134547 TCAGACATTCCTGTGCTTACAGCGAAGTAGATCGAAGATTTCAGCA--TGGCATCCCTGTGTTTA
1 T--GGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTTA
* * * * * * * * *
47134610 TAGGGAACAAGTTGAAGATAGAAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGAT
62 TAGGGAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGAT
47134673 AGAAGATCTA
Statistics
Matches: 1322, Mismatches: 100, Indels: 44
0.90 0.07 0.03
Matches are distributed among these distances:
130 2 0.00
131 21 0.02
132 1281 0.97
133 18 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (131 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
GAACAAATCGAAGATAGCAGATCTGGCATCCTTGTGCTTACAGCGAACAGATCGAAGATTTCAGC
A
Found at i:47134770 original size:132 final size:132
Alignment explanation
Indices: 47133276--47134763 Score: 2449
Period size: 132 Copynumber: 11.3 Consensus size: 132
47133266 GCAGATTTGA
* * *
47133276 CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
47133341 CAGATCGAAGATAGCAGATCTGACACTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCTT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
*
47133406 AG
131 GG
* * *
47133408 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGTATCCTTGTGATTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
*
47133472 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCA
47133537 TGG
130 TGG
47133540 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* *
47133604 ACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCA
47133669 TGG
130 TGG
*
47133672 CATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
** *
47133737 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAATGAAGCAGATTGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47133802 GG
131 GG
*
47133804 CATCCCTGTGTTTATAGGGAACAAGTTGAGGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
47133869 CAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47133934 GG
131 GG
* * *
47133936 CATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* *
47134001 CAGATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47134066 GG
131 GG
* * *
47134068 CATCCCTATATTTATAGGGAACAAGTTGAAGATAGCAAATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
** *
47134133 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAATGAAGCAGATTGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47134198 GG
131 GG
* *
47134200 CATCCCTGTGTTTATAGGGAACAAGTTGAGGATAGCATATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
47134265 CAGATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47134330 GG
131 GG
* * *
47134332 CATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
*
47134397 CAGATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47134462 GG
131 GG
* * *
47134464 CATCCCTATATTTATAGGGAACAAGTTGAAGATAGCAAATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * * *
47134529 CAGATCGAAGATAGCAGATCAGACATTCCTGTGCTTACAGCGAAGTAGATCGAAGATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47134594 GG
131 GG
*
47134596 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGAAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * * * * *
47134661 CAAATCGAAGATAGAAGATCTAACACTCCTGTGATTATAGCGAAGCAGATCGAAGATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
47134726 GG
131 GG
47134728 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
47134764 CAATTTGACA
Statistics
Matches: 1272, Mismatches: 82, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
131 2 0.00
132 1268 1.00
133 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (132 bp):
CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
GG
Found at i:47135047 original size:20 final size:20
Alignment explanation
Indices: 47135019--47135066 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
47135009 AACCCAAATG
*
47135019 CCTAAAACCCAGCTAAATTA
1 CCTAAAACCCAGCTAAACTA
*
47135039 CCTATAACCCAGCTAAACTA
1 CCTAAAACCCAGCTAAACTA
47135059 CCTAAAAC
1 CCTAAAAC
47135067 TCGGTACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.33, G:0.04, T:0.19
Consensus pattern (20 bp):
CCTAAAACCCAGCTAAACTA
Found at i:47137032 original size:49 final size:49
Alignment explanation
Indices: 47136964--47137183 Score: 401
Period size: 49 Copynumber: 4.5 Consensus size: 49
47136954 TATCACAGTT
*
47136964 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
47137013 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
47137062 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
47137111 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
47137158 ATACACTTTCACATTCATCACATTGG
1 ATACACTTTCACATTCATCACATTGG
47137184 ATCCTAAATC
Statistics
Matches: 169, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
47 30 0.18
49 137 0.81
50 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:47140751 original size:3 final size:3
Alignment explanation
Indices: 47140743--47140775 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
47140733 ATGTTACTAC
47140743 ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT AT
47140776 CACATATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:47154686 original size:43 final size:43
Alignment explanation
Indices: 47154625--47154711 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
47154615 GAGGTTTCCA
47154625 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
1 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
47154668 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
1 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
47154711 T
1 T
47154712 TTTACTTTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (43 bp):
TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
Found at i:47156689 original size:43 final size:41
Alignment explanation
Indices: 47156636--47156754 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 41
47156626 TGATGTATCG
* * *
47156636 TACCAATGCCATGTCTCAGACATGGTCTTACATGGAAATCTCA
1 TACCGATGCCATGTC-CAGACATGGTCTTACA-CGAAACCTCA
* * **
47156679 TATCGATGCCAATAGCCCA-ACTATGGTCTTACACGATGCCTCA
1 TACCGATGCC-AT-GTCCAGAC-ATGGTCTTACACGAAACCTCA
*
47156722 TGCCGATGCCATGTCCTAGACATGGTCTTACAC
1 TACCGATGCCATGTCC-AGACATGGTCTTACAC
47156755 TAGCTCACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
41 3 0.05
42 15 0.25
43 26 0.43
44 15 0.25
45 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (41 bp):
TACCGATGCCATGTCCAGACATGGTCTTACACGAAACCTCA
Found at i:47156957 original size:48 final size:48
Alignment explanation
Indices: 47156721--47156946 Score: 353
Period size: 48 Copynumber: 4.7 Consensus size: 48
47156711 ACGATGCCTC
* *
47156721 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
47156769 ATGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
47156817 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATTACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
47156865 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
47156913 ATGCCAATGCCATATCCCAGACATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAC
47156947 GGTTACACAT
Statistics
Matches: 165, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 165 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:47171542 original size:27 final size:26
Alignment explanation
Indices: 47171511--47171688 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
47171501 TAAATTGTAC
47171511 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
47171538 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
47171564 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
47171592 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
47171620 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
47171647 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
47171674 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47171689 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:47171627 original size:82 final size:81
Alignment explanation
Indices: 47171512--47171667 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
47171502 AAATTGTACA
* *
47171512 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
47171576 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
47171593 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
47171658 TGCGAGTTGA
65 TGCGAATTGA
47171668 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47171679 original size:82 final size:81
Alignment explanation
Indices: 47171508--47171688 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
47171498 GATTAAATTG
* *
47171508 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
47171573 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
47171589 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
47171653 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
47171671 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
47171689 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:47171699 original size:27 final size:27
Alignment explanation
Indices: 47171593--47171699 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
47171583 TGACCATGCG
* * * *
47171593 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
47171621 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
47171648 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
47171675 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
47171700 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:47182822 original size:47 final size:49
Alignment explanation
Indices: 47182706--47182884 Score: 196
Period size: 47 Copynumber: 3.8 Consensus size: 49
47182696 TGTAACCCGC
* * * *
47182706 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GC-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
* *
47182752 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
47182802 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
47182846 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
47182885 TTCAACCATC
Statistics
Matches: 113, Mismatches: 9, Indels: 19
0.80 0.06 0.13
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 1 0.01
46 35 0.31
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:47182874 original size:94 final size:93
Alignment explanation
Indices: 47182714--47182884 Score: 279
Period size: 94 Copynumber: 1.8 Consensus size: 93
47182704 GCCCATAAGT
* * *
47182714 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATTAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
47182779 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
47182807 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
47182872 ACGAGTTCGGATG
65 ACGAGTTCGGATG
47182885 TTCAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 27 0.38
94 44 0.62
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:47183338 original size:30 final size:30
Alignment explanation
Indices: 47183304--47183363 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
47183294 CCTTAATACG
*
47183304 AACTTTGGCAAAATTAC-CATTTTTCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
47183334 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
47183364 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:47183783 original size:15 final size:16
Alignment explanation
Indices: 47183744--47183788 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
47183734 AAGAATTAGG
*
47183744 TTGAGAAAATTATTTAA
1 TTGA-AAAATTAATTAA
47183761 TTGAAAAATTAATTAA
1 TTGAAAAATTAATTAA
*
47183777 TT-TAAAATTAAT
1 TTGAAAAATTAAT
47183789 ATTTATTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 9 0.35
16 13 0.50
17 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (16 bp):
TTGAAAAATTAATTAA
Found at i:47191589 original size:31 final size:32
Alignment explanation
Indices: 47191551--47191612 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
47191541 CTCGCTGCAA
* *
47191551 TCTGGTGGCTTTGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
47191582 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
47191613 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:47199565 original size:7 final size:6
Alignment explanation
Indices: 47199551--47199587 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
47199541 TGATGATGAA
*
47199551 AAAAAG -AAAAG AGAAAG AAAAAG AAAAA- AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
47199588 GGCTCTCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 10 0.37
6 17 0.63
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:47199573 original size:17 final size:17
Alignment explanation
Indices: 47199551--47199587 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
47199541 TGATGATGAA
* *
47199551 AAAAAGAAAAGAGAAAG
1 AAAAAGAAAAAAAAAAG
47199568 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
47199585 AAA
1 AAA
47199588 GGCTCTCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:47200901 original size:40 final size:40
Alignment explanation
Indices: 47200846--47201063 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
47200836 TGGATGATAA
* * *
47200846 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
47200886 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47200926 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
47200966 CCGGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
47201006 CCGGGCTATGTCCCGCAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
47201046 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
47201064 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47207648 original size:11 final size:10
Alignment explanation
Indices: 47207632--47207666 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
47207622 GATGATGAAA
47207632 AAAGAAAAGAG
1 AAAGAAAA-AG
47207643 AAAGAAAAAG
1 AAAGAAAAAG
*
47207653 AAAAAAAAAG
1 AAAGAAAAAG
47207663 AAAG
1 AAAG
47207667 GCTCTCATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:47208979 original size:40 final size:40
Alignment explanation
Indices: 47208924--47209141 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
47208914 TGGATGATAA
* * *
47208924 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
47208964 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47209004 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47209044 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
47209084 CCGGGCTATGTCCCGAAGGCACTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
47209124 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
47209142 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47213078 original size:23 final size:23
Alignment explanation
Indices: 47213030--47213141 Score: 61
Period size: 23 Copynumber: 4.8 Consensus size: 23
47213020 AAAAGACGAG
***
47213030 TGAACAAG-AAATATTCTCTGGAA
1 TGAAC-AGTAAATATTCTCTATCA
*
47213053 TGAATAGTAAATATTCTCTATCA
1 TGAACAGTAAATATTCTCTATCA
* *
47213076 TGAACAGTGGAA-A-TCTCTAACA
1 TGAACAGT-AAATATTCTCTATCA
* *
47213098 -GAAACAGTAAAGATTCTCTGGTGCA
1 TG-AACAGTAAATATTCTCT-AT-CA
* *
47213123 TGAATAGTGAATATTCTCT
1 TGAACAGTAAATATTCTCT
47213142 GTAGTTTATA
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
21 3 0.04
22 17 0.25
23 29 0.43
24 2 0.03
25 16 0.24
26 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (23 bp):
TGAACAGTAAATATTCTCTATCA
Found at i:47215733 original size:41 final size:43
Alignment explanation
Indices: 47215654--47215791 Score: 133
Period size: 41 Copynumber: 3.2 Consensus size: 43
47215644 TCTCAGACGT
*
47215654 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
*
47215697 GGTCTTACATG-AATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACAG
* * * * *
47215738 GGTATTACACGTAACCACATATATTGATGCCAAC-ATCCCAGAC-G
1 GGTCTTACATGTAATCA-A-ATATCGATGCC-ACTGTCCCAGACAG
47215782 TGGTCTTACA
1 -GGTCTTACA
47215792 CGAGAACACG
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
41 27 0.35
42 13 0.17
43 12 0.15
44 3 0.04
45 23 0.29
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
Found at i:47223043 original size:39 final size:39
Alignment explanation
Indices: 47222960--47223054 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 39
47222950 TGAAACCAAT
*
47222960 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
47222998 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
47223037 TTCCAGCACGTAGCCTGC
1 TACCAGCACGAAGCCTGC
47223055 TGACCTTAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 14 0.30
39 33 0.70
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:47223080 original size:39 final size:39
Alignment explanation
Indices: 47223037--47223144 Score: 164
Period size: 39 Copynumber: 2.8 Consensus size: 39
47223027 CCGGACATAT
* *
47223037 TTCCAGCACGTAGCCTGCTGACCTTAAGTCCGAATATAA
1 TTCCAGCACATAGCCTGCTGACCCTAAGTCCGAATATAA
*
47223076 TTCCAGCACATAGCCTG-TGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCT-GACCCTAAGTCCGAATATAA
*
47223115 TTCCAGCACATAGCCTGCGGACCCTAAGTC
1 TTCCAGCACATAGCCTGCTGACCCTAAGTC
47223145 TTGATATACA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
38 1 0.02
39 62 0.98
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCTGACCCTAAGTCCGAATATAA
Found at i:47223082 original size:78 final size:78
Alignment explanation
Indices: 47222993--47223144 Score: 173
Period size: 78 Copynumber: 1.9 Consensus size: 78
47222983 TTAAACCCGG
* * * * * *
47222993 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCT
1 TATAATACCAGCAC-ATAGCCTG-GGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
47223056 GACCTTAAGTCCGAA
64 GACCCTAAGTCCGAA
* * * *
47223071 TATAATTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
47223136 CCCTAAGTC
66 CCCTAAGTC
47223145 TTGATATACA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
77 4 0.07
78 57 0.93
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCGAA
Found at i:47229363 original size:26 final size:28
Alignment explanation
Indices: 47229304--47229365 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 28
47229294 TTTCAACCCC
47229304 CTTATTCT-TTTCTTTATTATTATTGTTT
1 CTTATT-TATTTCTTTATTATTATTGTTT
47229332 CGTTATTTATTTCTTTATTATTATT-TTT
1 C-TTATTTATTTCTTTATTATTATTGTTT
47229360 -TTATTT
1 CTTATTT
47229366 TTGGTTTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 6 0.19
28 5 0.16
29 21 0.66
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.73
Consensus pattern (28 bp):
CTTATTTATTTCTTTATTATTATTGTTT
Found at i:47235261 original size:17 final size:18
Alignment explanation
Indices: 47235241--47235274 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
47235231 ACTAATAAAT
47235241 AATATAATTT-ATATTAA
1 AATATAATTTGATATTAA
*
47235258 AATATTATTTGATATTA
1 AATATAATTTGATATTA
47235275 CTTTATTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
AATATAATTTGATATTAA
Found at i:47235389 original size:39 final size:39
Alignment explanation
Indices: 47235346--47235425 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
47235336 CAAAGTTGAT
47235346 AATAATTACATATTAGTTATTATCACCTTTATTTATTTA
1 AATAATTACATATTAGTTATTATCACCTTTATTTATTTA
47235385 AATAATTACATATTAGTTATTATCACCTTTATTTATTTA
1 AATAATTACATATTAGTTATTATCACCTTTATTTATTTA
47235424 AA
1 AA
47235426 AATAAAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.50
Consensus pattern (39 bp):
AATAATTACATATTAGTTATTATCACCTTTATTTATTTA
Found at i:47247055 original size:28 final size:28
Alignment explanation
Indices: 47247023--47247092 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
47247013 AATGAGATTG
*
47247023 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
47247051 GCACTAAGTGTGCGAGTTTCATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
47247079 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47247093 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:47250471 original size:30 final size:30
Alignment explanation
Indices: 47250437--47250493 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
47250427 TTCCCGAGCC
47250437 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
47250467 TAGGGGCAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAGTGTAAATATGCAAAA
47250494 TTTTGAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:47260802 original size:41 final size:42
Alignment explanation
Indices: 47260685--47260803 Score: 116
Period size: 42 Copynumber: 2.9 Consensus size: 42
47260675 ATGAGCTTAA
* * * *
47260685 GTGTAAGACCATATCTAGGATATGGCATCGTTAAGAGATTTC
1 GTGTAAGACCATAGCTAGGATATGGCATCGGTATGAGAATTC
* * * * * *
47260727 GTTTAAGACTAT-GTCTGGGACATGACATCAGTATGAGAATT-
1 GTGTAAGACCATAG-CTAGGATATGGCATCGGTATGAGAATTC
*
47260768 GTGTAAGACCATAGCTAGGATATGGCATTGGTATGA
1 GTGTAAGACCATAGCTAGGATATGGCATCGGTATGA
47260804 TTCTATGTAT
Statistics
Matches: 58, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
41 27 0.47
42 31 0.53
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATAGCTAGGATATGGCATCGGTATGAGAATTC
Found at i:47261970 original size:21 final size:21
Alignment explanation
Indices: 47261944--47261986 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
47261934 ACGTGTGACC
47261944 CCTGTTTTTATAAAAAAAATT
1 CCTGTTTTTATAAAAAAAATT
47261965 CCTGTTTTTATAAAAAAAATT
1 CCTGTTTTTATAAAAAAAATT
47261986 C
1 C
47261987 TAAGTGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.42
Consensus pattern (21 bp):
CCTGTTTTTATAAAAAAAATT
Found at i:47267466 original size:49 final size:49
Alignment explanation
Indices: 47267335--47267470 Score: 177
Period size: 50 Copynumber: 2.7 Consensus size: 49
47267325 ATGACCCATT
*
47267335 GTGAGTACACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG
1 GTGAGT-CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG
*
47267385 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGTATTG
1 GTGA-GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-A-TG
* * *
47267436 TTGA-TCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 GTGAGTCACATGTGTAGTACTAAGTGCAGGCTACTA
47267471 TGCGTACCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
49 31 0.40
50 40 0.51
51 7 0.09
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG
Found at i:47270456 original size:46 final size:46
Alignment explanation
Indices: 47270303--47270431 Score: 136
Period size: 46 Copynumber: 2.8 Consensus size: 46
47270293 ACATTATAAG
* * ** *
47270303 AGCCAGTGTAAGACTATGTCAGGGGCATGGCATCAGTATCGAGACGAGT-
1 AGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCCTCAAGAC-A-TA
* * *
47270352 -GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACATA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACATA
47270397 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGC
47270432 TACAAAATGA
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 43 0.64
47 10 0.15
48 12 0.18
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACATA
Found at i:47272748 original size:46 final size:49
Alignment explanation
Indices: 47272681--47272786 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 49
47272671 GGACAGGACA
* * *
47272681 AGACAGAAATGAGCCATGTAAGTCCATA-TCA-A-ATATATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGCCCATATTCATATATATATGGCATTGG
*
47272727 AGACAGGAATGAGCCATGTAAGCCCATATTTGATATATATATGGCATTGG
1 AGACAGGAATGAGCCATGTAAGCCCATA-TTCATATATATATGGCATTGG
47272777 AGACAGGAAT
1 AGACAGGAAT
47272787 AATTCATATA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
46 26 0.50
48 2 0.04
49 1 0.02
50 23 0.44
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (49 bp):
AGACAGGAATGAGCCATGTAAGCCCATATTCATATATATATGGCATTGG
Found at i:47279179 original size:42 final size:42
Alignment explanation
Indices: 47279117--47279214 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
47279107 ATCGAGACTA
*
47279117 TGTGTAAGACCATATCTGGGATATGGTATC-AT-TACGATATT
1 TGTGTAAGACCATATCTGGGATATGGCATCAATATACGAT-TT
* *
47279158 TCGTGTAAGACCATATTTGGGATATGGCATCAATATAGGATTT
1 T-GTGTAAGACCATATCTGGGATATGGCATCAATATACGATTT
*
47279201 TATGTAAGACCATA
1 TGTGTAAGACCATA
47279215 ACTAGGCTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
41 1 0.02
42 39 0.78
43 5 0.10
44 5 0.10
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (42 bp):
TGTGTAAGACCATATCTGGGATATGGCATCAATATACGATTT
Found at i:47280493 original size:27 final size:27
Alignment explanation
Indices: 47280456--47280509 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
47280446 TCACACGGGC
*
47280456 GTGTGGCTCTTAAAACATGAAAAATTT
1 GTGTCGCTCTTAAAACATGAAAAATTT
47280483 GTGTCGCTCTTAAAACATGAAAAATTT
1 GTGTCGCTCTTAAAACATGAAAAATTT
47280510 TTTAAGTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (27 bp):
GTGTCGCTCTTAAAACATGAAAAATTT
Found at i:47283597 original size:37 final size:37
Alignment explanation
Indices: 47283544--47283646 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
47283534 TCGAATAGTC
*
47283544 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
47283581 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
47283618 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
47283647 ATATATTTTC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:47283849 original size:48 final size:48
Alignment explanation
Indices: 47283793--47284220 Score: 721
Period size: 48 Copynumber: 8.9 Consensus size: 48
47283783 ACACATCTGC
*
47283793 TACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
47283841 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
47283889 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
47283937 TATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
47283985 TACATATTTCATATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
47284033 TACATATTTCACACTAGCCATTCGGTTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
47284081 TATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
47284129 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
47284177 TACATATTTCACACTAGCCATTCGGCTTTACCACATATATATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
47284221 TTATCTTGTA
Statistics
Matches: 355, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 355 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:47289768 original size:27 final size:27
Alignment explanation
Indices: 47289727--47289779 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
47289717 TGTCATGTGA
* *
47289727 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
47289754 AATTGAATGTTAAATTACTATTACAT
1 AATTGAATGGCAAATTACTATTACAT
47289780 AGGTTGTATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.40
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:47290106 original size:48 final size:50
Alignment explanation
Indices: 47290027--47290258 Score: 281
Period size: 50 Copynumber: 4.7 Consensus size: 50
47290017 ATCTATTGTG
*
47290027 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
47290076 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
47290126 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
47290176 AGGTAACGTGTGTAGTGCTAAGTCCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
47290226 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
47290259 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
48 42 0.28
49 28 0.18
50 44 0.29
51 38 0.25
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:47290237 original size:99 final size:99
Alignment explanation
Indices: 47290030--47290271 Score: 290
Period size: 99 Copynumber: 2.4 Consensus size: 99
47290020 TATTGTGAGG
* * **
47290030 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATGGTCGCATGTGTAGTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATGGTAACATGTGTAGTACTA
* *
47290095 AGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AGTCCAGGCTACTACGCGTACCCGATAACTTCGA
* * ** * *
47290129 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTAACGTGTGTAGTGC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AAT-GGTAACATGTGTAGTAC
* * *
47290194 TAAGTCCAGGCTACTACGTGTACCGGATAA-TT-GG
64 TAAGTCCAGGCTACTACGCGTACCCGATAACTTCGA
* * *
47290228 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
47290272 GCCTTGTCTA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
99 80 0.66
100 3 0.02
101 39 0.32
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATGGTAACATGTGTAGTACTA
AGTCCAGGCTACTACGCGTACCCGATAACTTCGA
Found at i:47294337 original size:18 final size:19
Alignment explanation
Indices: 47294307--47294343 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
47294297 AGTATTAAAG
47294307 AAAAAAAATAT-AAATCCC
1 AAAAAAAATATAAAATCCC
47294325 AAAATAAAA-ATAAAATCCC
1 AAAA-AAAATATAAAATCCC
47294344 GAGAGGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAAAAATATAAAATCCC
Found at i:47295916 original size:21 final size:22
Alignment explanation
Indices: 47295890--47295930 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
47295880 CATTTGGCAC
*
47295890 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCGACACGCCCATGTGGG
*
47295911 AGGGGCGACACTCCCATGTG
1 AGGGGCGACACGCCCATGTG
47295931 ACCAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.17, C:0.29, G:0.41, T:0.12
Consensus pattern (22 bp):
AGGGGCGACACGCCCATGTGGG
Found at i:47297124 original size:47 final size:44
Alignment explanation
Indices: 47297050--47297319 Score: 204
Period size: 47 Copynumber: 5.8 Consensus size: 44
47297040 GTGGGTAAGG
* *
47297050 TGCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCATATCTCA
1 TGCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTC-TATCTCA
* * * **
47297097 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTTG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-ATCTCA
*
47297144 TAGCCGATGCATGTCCTAGACATGTCTTACAC-AGGC-CTACGTCTCGA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTA-GCTCTA--TCTC-A
* * *
47297191 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-ATCTC-A
* * * * *
47297237 CGCCGATGCGGTGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCT-AT-CTCA
*
47297284 TGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
47297320 CCACAATAAC
Statistics
Matches: 182, Mismatches: 27, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 71 0.39
47 78 0.43
48 29 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTATCTCA
Found at i:47297196 original size:46 final size:46
Alignment explanation
Indices: 47297146--47297315 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
47297136 TCATCTTGTA
*
47297146 GCCGATGCATGTCCTAGACATGTCTTACACAGGC-CTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACAGGCACT-CGTCTCGAG
*
47297192 GCCGATGCATGTCCCAGACATGTCTTACACTA-GCACTCGTCTCGAC
1 GCCGATGCATGTCCCAGACATGTCTTACAC-AGGCACTCGTCTCGAG
* * * * * *
47297238 GCCGATGCGGTGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACAGGCACTCGT-CTCGAG
*
47297286 GCTGATGCATGTCCCAGACATGTCTTACAC
1 GCCGATGCATGTCCCAGACATGTCTTACAC
47297316 TAGCCCACAA
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
46 56 0.52
47 27 0.25
48 23 0.21
49 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACAGGCACTCGTCTCGAG
Found at i:47297306 original size:94 final size:92
Alignment explanation
Indices: 47297100--47297319 Score: 250
Period size: 94 Copynumber: 2.3 Consensus size: 92
47297090 TATCTCATGT
* * *
47297100 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTTGTAGCCGATGCATGTCCTAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATCTCGTAGCCGATGCATGTCCCAGAC
* *
47297165 ATGTCTTACACAGGCCTACGTCTCGAGGC
64 ATGTCTTACACAGGCCTACATATCGAGGC
* *
47297194 CGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCGTCTCG-ACGCCGATGCGGTGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTA-TCATCTCGTA-GCCGATGC-ATGTCCCAGA
* *
47297257 CATGGTCTTACACTGGCTCT-CATAAT-GTGGC
63 CAT-GTCTTACACAGGC-CTACAT-ATCGAGGC
*
47297288 TGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
47297320 CCACAATAAC
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
91 2 0.02
92 26 0.24
93 25 0.23
94 54 0.49
95 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCGTAGCCGATGCATGTCCCAGACAT
GTCTTACACAGGCCTACATATCGAGGC
Found at i:47297311 original size:140 final size:141
Alignment explanation
Indices: 47297051--47297315 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
47297041 TGGGTAAGGT
* * * *
47297051 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCATATCTCATGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCACATATCTCACGCCGATGCCATGTCCCAG
** *
47297116 ACATGGTCTTACACTAACTATCATCTTGTAGCCGATGCATGTCCTAGACATGTCTTACACAGGCC
66 ACATGGTCTTACACTAACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACAGGCC
47297181 TACGTCTCGAG
131 TACGTCTCGAG
* * **
47297192 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCAC-TCGTCTCGACGCCGATGCGGTGTCCC
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCACAT-ATCTC-ACGCCGATGCCATGTCCC
** * * *
47297254 AGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACAC
64 AGACATGGTCTTACACTAACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACAC
47297316 TAGCCCACAA
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 80 0.75
141 7 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCACATATCTCACGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACAGGCC
TACGTCTCGAG
Found at i:47302262 original size:27 final size:27
Alignment explanation
Indices: 47302231--47302299 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
47302221 AGACCCGCTT
* *
47302231 TGTGGTAAAATGATTGTATTTCCCTTA
1 TGTGGTAAAATGACTATATTTCCCTTA
* *
47302258 TGTGGTAGAATGACTATTTTTCCCTTA
1 TGTGGTAAAATGACTATATTTCCCTTA
* * *
47302285 TATGCTAAGATGACT
1 TGTGGTAAAATGACT
47302300 GTTTTGCCCC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (27 bp):
TGTGGTAAAATGACTATATTTCCCTTA
Found at i:47303666 original size:46 final size:46
Alignment explanation
Indices: 47303568--47303690 Score: 124
Period size: 46 Copynumber: 2.6 Consensus size: 46
47303558 ATTGTGGGGT
* * *
47303568 AGTGTAATACATGTCTGGGACATGCATGGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACGTAAGCC
** **
47303614 TCTGTAAGACATGTCTGGGACATGCATCGG-CTATTAAACG-ATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAAACGTA-AGCC
*
47303660 AGTGTAAGTCCATGTCTGGGACATGGCATCG
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCG
47303691 ACATGAGATA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
45 3 0.05
46 40 0.63
47 14 0.22
48 6 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACGTAAGCC
Found at i:47314444 original size:112 final size:112
Alignment explanation
Indices: 47314291--47314513 Score: 365
Period size: 112 Copynumber: 2.0 Consensus size: 112
47314281 TCTGCTCGTG
* * *
47314291 TGTTTACTACCATGCATGTTAACCTAAAATTCAAGGTGCAGGGGACACACGGCTGAACGACATGC
1 TGTTTACTACCATGCATGTTAACCTAAAATTCAAGGTGCAGGGGACACACGGCCGAACGAAACGC
* * *
47314356 CCATGGCGCTGACCGTGTGTCATACATGGCCTAGACACGTGCCCGTA
66 CCATGGCGCTGACCGTGTGTCACACACGGCCTAGACACATGCCCGTA
* *
47314403 TGTTTACTACCATGCATGTTAACCTAAAATTTAGGGTGCAGGGGACACACGGCCGAACGAAACGC
1 TGTTTACTACCATGCATGTTAACCTAAAATTCAAGGTGCAGGGGACACACGGCCGAACGAAACGC
*
47314468 CCATGGGGCTGACCGTGTGTCACACACGGCCTAGACACATGCCCGT
66 CCATGGCGCTGACCGTGTGTCACACACGGCCTAGACACATGCCCGT
47314514 GTATCTACCC
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 102 1.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (112 bp):
TGTTTACTACCATGCATGTTAACCTAAAATTCAAGGTGCAGGGGACACACGGCCGAACGAAACGC
CCATGGCGCTGACCGTGTGTCACACACGGCCTAGACACATGCCCGTA
Found at i:47328477 original size:45 final size:45
Alignment explanation
Indices: 47328311--47328483 Score: 156
Period size: 45 Copynumber: 3.8 Consensus size: 45
47328301 TGTAACCCGC
* * *
47328311 CCATAAGTGAACTCGGACTCAACTCATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCACGAGCTCGGACATTCGCAT
* *
47328356 CCATAAGTGAACTCAGACTCAACTCACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCACGAGCTCGGACATTCGC-A--T
* *** * *
47328401 ACATCTCTCGACCTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTC-ACGAGCTCGGACATTCGCAT
*
47328448 CCATAAGTGAACTCGGACTC-ACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTC-ACGAGCTCGGA
47328484 TGCCCAAAAT
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
45 54 0.52
46 26 0.25
47 14 0.14
49 4 0.04
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCACGAGCTCGGACATTCGCAT
Found at i:47343127 original size:25 final size:25
Alignment explanation
Indices: 47343093--47343142 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
47343083 AAGGAGTATG
47343093 AACTTCTCAAACCACCATGATCATT
1 AACTTCTCAAACCACCATGATCATT
47343118 AACTTCTCAAACCACCATGATCATT
1 AACTTCTCAAACCACCATGATCATT
47343143 CAATGGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.04, T:0.28
Consensus pattern (25 bp):
AACTTCTCAAACCACCATGATCATT
Found at i:47345518 original size:6 final size:6
Alignment explanation
Indices: 47345504--47345552 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
47345494 AATCCTCTTA
* * *
47345504 TATTCT TATTTT TATTTT TATTTT TATTCT TCTTTT TATTTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TA-TTTT TATTTT
47345553 CTTTTCAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:47345539 original size:24 final size:25
Alignment explanation
Indices: 47345504--47345577 Score: 82
Period size: 24 Copynumber: 3.0 Consensus size: 25
47345494 AATCCTCTTA
47345504 TATTCTTATTTTTA-TTTTTATTTT
1 TATTCTTATTTTTATTTTTTATTTT
*
47345528 TATTCTTCTTTTTATTTTTTATTTT
1 TATTCTTATTTTTATTTTTTATTTT
* *
47345553 CT-TT-TCAATTTTATTATTTTATTTT
1 -TATTCTTATTTTTATT-TTTTATTTT
47345578 GAAAGACATA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
24 21 0.49
25 21 0.49
26 1 0.02
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (25 bp):
TATTCTTATTTTTATTTTTTATTTT
Found at i:47345552 original size:12 final size:12
Alignment explanation
Indices: 47345513--47345577 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
47345503 ATATTCTTAT
47345513 TTTTA-TTTTTA
1 TTTTATTTTTTA
*
47345524 TTTTTATTCTTCT-
1 -TTTTATT-TTTTA
47345537 TTTTATTTTTTA
1 TTTTATTTTTTA
* **
47345549 TTTTCTTTTCAA
1 TTTTATTTTTTA
47345561 TTTTATTATTTTA
1 TTTTATT-TTTTA
47345574 TTTT
1 TTTT
47345578 GAAAGACATA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
11 3 0.07
12 27 0.66
13 8 0.20
14 3 0.07
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:47345563 original size:19 final size:18
Alignment explanation
Indices: 47345524--47345577 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
47345514 TTTATTTTTA
*
47345524 TTTTTATTCTTCTTTTTAT
1 TTTTTATT-TTCTTTTAAT
47345543 TTTTTATTTTCTTTTCAAT
1 TTTTTATTTTCTTTT-AAT
*
47345562 TTTATTATTTTATTTT
1 TTT-TTATTTTCTTTT
47345578 GAAAGACATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 7 0.23
19 13 0.42
20 11 0.35
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTCTTTTAAT
Found at i:47348456 original size:13 final size:13
Alignment explanation
Indices: 47348440--47348472 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47348430 TTTAATTAAA
*
47348440 TTAGTTAATTAGT
1 TTAGATAATTAGT
47348453 TTAGATAATTAGT
1 TTAGATAATTAGT
47348466 TTA-ATAA
1 TTAGATAA
47348473 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:47351893 original size:46 final size:46
Alignment explanation
Indices: 47351804--47352068 Score: 254
Period size: 46 Copynumber: 5.7 Consensus size: 46
47351794 TGGGTAAGAT
* **
47351804 GCCGATGCCATGTCCTAGACATGATCTTACACTAAC-TATCATCTCGTA
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTA-CATCTCGTA
47351852 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTA
* *
47351898 GCCGATGCATGTCCCAGACATGTCTTGCAGTGGCTTACATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTA
* * * * *
47351943 GGCTGATGCATGTCACAGACATGTGTTACACTAG-TT-C-TCGTCTTAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATC-TCGT-A
* * *
47351989 TGCCGATGCCATGTCCCAGACATGCTCTTACACTGGCTCACATAAT-GTG
1 -GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTACAT-CTCGTA
* * *
47352038 GTCGATGCATGTCACAAACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
47352069 AGCTCACACT
Statistics
Matches: 182, Mismatches: 24, Indels: 24
0.79 0.10 0.10
Matches are distributed among these distances:
43 2 0.01
44 3 0.02
45 3 0.02
46 104 0.57
47 43 0.24
48 22 0.12
49 1 0.01
50 2 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTA
Found at i:47352059 original size:94 final size:92
Alignment explanation
Indices: 47351802--47352072 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 92
47351792 CGTGGGTAAG
* ** * *
47351802 ATGCCGATGCCATGTCCTAGACATGATCTTACACTAACTATCATCTCGTAGCCGATGCATGTCCC
1 ATGCCGATGCCATGTCCCAGACATG-TCTTACACTGGCTA-CATCTCGT-GGCGATGCATGTCAC
*
47351867 AGACATGTCTTACACTGGCTTACATCTCGT
63 AGACATGTCTTACACTAGCTTACATCTCGT
* * *
47351897 A-GCCGATG-CATGTCCCAGACATGTCTTGCAGTGGCTTACATCTCGAGGCTGATGCATGTCACA
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGTGGC-GATGCATGTCACA
* *
47351960 GACATGTGTTACACTAG-TT-C-TCGTCTT
64 GACATGTCTTACACTAGCTTACATC-TCGT
*
47351987 AATGCCGATGCCATGTCCCAGACATGCTCTTACACTGGCTCACATAAT-GTGGTCGATGCATGTC
1 -ATGCCGATGCCATGTCCCAGACATG-TCTTACACTGGCT-ACAT-CTCGTGG-CGATGCATGTC
*
47352051 ACAAACATGTCTTACACTAGCT
61 ACAGACATGTCTTACACTAGCT
47352073 CACACTCAAA
Statistics
Matches: 148, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
89 2 0.01
90 4 0.03
91 5 0.03
92 49 0.33
93 32 0.22
94 52 0.35
95 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
ATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTACATCTCGTGGCGATGCATGTCACAGA
CATGTCTTACACTAGCTTACATCTCGT
Found at i:47359755 original size:25 final size:26
Alignment explanation
Indices: 47359702--47359773 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
47359692 GAGGAAGTGC
* *
47359702 AAAAGGGC-TTTGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCA
* * *
47359727 AAAAGGACTTTTGCCCCATTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
47359753 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
47359774 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 7 0.18
26 32 0.82
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCA
Found at i:47360069 original size:31 final size:31
Alignment explanation
Indices: 47359990--47360075 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
47359980 TATTGTTACA
*
47359990 GTAAAGGCTTCGGCCCAATGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGATATGAATAAT
*
47360021 GAAAAGGCTTCGGCCCAGTGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGATATGAATAAT
47360052 GTAAAGGCTTCGGCCCAGT-ATATG
1 GTAAAGGCTTCGGCCCAGTGATATG
47360076 CTGAGATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGATATGAATAAT
Found at i:47375890 original size:42 final size:42
Alignment explanation
Indices: 47375826--47375936 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
47375816 TAGGGTTACC
* * * *
47375826 GAGACTATGCGTAAAACCATATCTAGGATATGCCATC-ATTAT
1 GAGACTTTGTGTAAGACCATATCTAGGATATGCCACCGA-TAT
* * *
47375868 GAGACTTTGTGTAAGACAATATCTGGGATATGGCACCGATAT
1 GAGACTTTGTGTAAGACCATATCTAGGATATGCCACCGATAT
* *
47375910 GAGATTTTGTGTAAGACCATAGCTAGG
1 GAGACTTTGTGTAAGACCATATCTAGG
47375937 CTATTGGCAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 56 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (42 bp):
GAGACTTTGTGTAAGACCATATCTAGGATATGCCACCGATAT
Done.