Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 143 of 373
Found at i:47378679 original size:37 final size:37
Alignment explanation
Indices: 47378620--47378728 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
47378610 AGCTCAGATG
* *
47378620 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
47378657 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
47378694 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
47378729 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:47379002 original size:48 final size:48
Alignment explanation
Indices: 47378875--47379175 Score: 417
Period size: 48 Copynumber: 6.1 Consensus size: 48
47378865 ACACATCGCC
* *
47378875 TACATATTTCACACTATCCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC--A
* *
47378925 TATATATTTCACATT-GACCATTC-GACTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCAG-CTTTACCACATATACATATCTCA
* *
47378973 TACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATATATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC------A
* *
47379027 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
*
47379075 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
47379123 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
47379171 TACAT
1 TACAT
47379176 CAATTTCAGC
Statistics
Matches: 226, Mismatches: 15, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
48 139 0.62
49 3 0.01
50 40 0.18
54 44 0.19
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
Found at i:47379078 original size:102 final size:98
Alignment explanation
Indices: 47378875--47379175 Score: 464
Period size: 102 Copynumber: 3.1 Consensus size: 98
47378865 ACACATCGCC
* * *
47378875 TACATATTTCACACTATCCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
* *
47378940 GACCATTC-GACTTTACCACATATGCATATCTCA
66 AACCATTCAG-CTTTACCACATATACATATCTCA
*
47378973 TACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATATATATATATATTTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATATATATATTTCA
47379038 CATTAACCATTCAGCTTTACCACATATACATATCTCA
62 CATTAACCATTCAGCTTTACCACATATACATATCTCA
*
47379075 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
47379138 AGCCATTCAGCTTTACCACATATACATATCTCA
66 AACCATTCAGCTTTACCACATATACATATCTCA
47379171 TACAT
1 TACAT
47379176 CAATTTCAGC
Statistics
Matches: 189, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
96 52 0.28
98 43 0.23
102 93 0.49
103 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AACCATTCAGCTTTACCACATATACATATCTCA
Found at i:47379118 original size:150 final size:151
Alignment explanation
Indices: 47378878--47379172 Score: 495
Period size: 150 Copynumber: 2.0 Consensus size: 151
47378868 CATCGCCTAC
* *
47378878 ATATTTCACACTATCCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTGAC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGAC
* * *
47378943 CATTCGACTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATA
65 CATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACA
47379008 TATACATATCTCATATATATAT
130 TATACATATCTCATATATATAT
*
47379030 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTC-ATACATATTTCACATT-AGC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-C
*
47379093 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACA
65 CATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACA
47379158 TATACATATCTCATA
130 TATACATATCTCATA
47379173 CATCAATTTC
Statistics
Matches: 135, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
149 1 0.01
150 92 0.68
152 42 0.31
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.37
Consensus pattern (151 bp):
ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGACC
ATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACAT
ATACATATCTCATATATATAT
Found at i:47382573 original size:42 final size:42
Alignment explanation
Indices: 47382522--47382635 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
47382512 GTTGAGATTT
* * *
47382522 CATGTAAGACCATATCTGGGATATGGCATCGATATGAGATT-T
1 CATGGAAGACCATATCTGGGATATGGCATCAATATGAG-TTCC
** * *
47382564 TTTGGAAGACCATAGCTGGGCTATTGGCATCAATATGAGTTCC
1 CATGGAAGACCATATCTGGGATA-TGGCATCAATATGAGTTCC
*
47382607 CATGTAAGACCATATCTGGGATATGGCAT
1 CATGGAAGACCATATCTGGGATATGGCAT
47382636 TGGTATGGTA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
CATGGAAGACCATATCTGGGATATGGCATCAATATGAGTTCC
Found at i:47382616 original size:43 final size:42
Alignment explanation
Indices: 47382514--47382635 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 42
47382504 TAGGGTTAGT
* *
47382514 TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTCCATGTAAGACCATATCTGGGATATGGCATCAATA
*** * * *
47382556 TGAGATTTTTTGGAAGACCATAGCTGGGCTATTGGCATCAATA
1 TGAGATTCCATGTAAGACCATATCTGGGATA-TGGCATCAATA
47382599 TGAG-TTCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATT-CCATGTAAGACCATATCTGGGATATGGCAT
47382636 TGGTATGGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 34 0.52
43 32 0.48
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGAGATTCCATGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:47383380 original size:15 final size:15
Alignment explanation
Indices: 47383352--47383385 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
47383342 GTAATTGATG
*
47383352 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
47383367 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
47383382 TGTG
1 TGTG
47383386 TGTATATACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:47394953 original size:45 final size:44
Alignment explanation
Indices: 47394847--47395070 Score: 166
Period size: 45 Copynumber: 4.8 Consensus size: 44
47394837 TTGTGTGTGT
47394847 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGT-A
* * * *
47394892 GCTAGTATAAGACATGTTTGGGACATGCATCGGTTATGAGATGT-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTA
* * *
47394936 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGTGAGA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTC-GAGATGT---A
* * * **
47394986 GCTAGTGTAAGACCATGTCTGAGACATGGCGTCAGCCTCGACTTCGATA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GGCTCGAGAT-G-TA
47395035 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
47395071 ATTATGCCCT
Statistics
Matches: 145, Mismatches: 20, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 9 0.06
45 45 0.31
46 19 0.13
48 3 0.02
49 30 0.21
50 32 0.22
51 5 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTA
Found at i:47395061 original size:49 final size:50
Alignment explanation
Indices: 47394936--47395068 Score: 157
Period size: 49 Copynumber: 2.7 Consensus size: 50
47394926 TATGAGATGT
*
47394936 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCGAGA
* * * * *
47394986 G-CTAGTGTAAGACCATGTCTGAGACATGGCGTCAGCCTC-GACT-T-CGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATC-GACACAGA-TATGCGAGA
47395035 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
47395069 GCATTATGCC
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
48 1 0.01
49 33 0.46
50 33 0.46
51 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCGAGA
Found at i:47399644 original size:42 final size:42
Alignment explanation
Indices: 47399585--47399739 Score: 136
Period size: 42 Copynumber: 3.7 Consensus size: 42
47399575 CCGAGACTAT
* *
47399585 GTGTAAAACCATATCTGGGATATGGCATC-ATTATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGA-TATCAGACTTC
* * * *
47399627 GTGTAAGTCCATTTCTGGGGTATGGCATCGATATCAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATCAGACTTC
* * * * *
47399669 GTGTAAGACCATAGCTGGGCTATTAGCATTGATA-CGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATC-AGACT-TC
* *
47399712 ATGTAAGACCATAACTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
47399740 TGGTGTGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
42 59 0.64
43 33 0.36
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATCAGACTTC
Found at i:47400702 original size:24 final size:23
Alignment explanation
Indices: 47400641--47400709 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
47400631 AAAGGATATG
*
47400641 TAATGCTCTGCTTTAAATGATGTA
1 TAATGCTCT-CTTTAAGTGATGTA
47400665 -ACA-GCTC-CTTTAAGTGATGTA
1 TA-ATGCTCTCTTTAAGTGATGTA
*
47400686 TAATGCTCTTCTTTAAGTAATGTA
1 TAATGCTC-TCTTTAAGTGATGTA
47400710 ACAGTCACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
21 14 0.37
22 5 0.13
23 5 0.13
24 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (23 bp):
TAATGCTCTCTTTAAGTGATGTA
Found at i:47406233 original size:17 final size:17
Alignment explanation
Indices: 47406200--47406251 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
47406190 AAATAAAGAC
47406200 AAAAAT-AAATGCTAAAAT
1 AAAAATAAAATG--AAAAT
*
47406218 AAAAATAAAATGAAAAG
1 AAAAATAAAATGAAAAT
* *
47406235 AAAATTAAATTGAAAAT
1 AAAAATAAAATGAAAAT
47406252 TAAATGGTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 18 0.62
18 6 0.21
19 5 0.17
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (17 bp):
AAAAATAAAATGAAAAT
Found at i:47406256 original size:17 final size:17
Alignment explanation
Indices: 47406213--47406256 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
47406203 AATAAATGCT
*
47406213 AAAATAAAAATAAAATG
1 AAAATAAAATTAAAATG
* *
47406230 AAAAGAAAATTAAATTG
1 AAAATAAAATTAAAATG
*
47406247 AAAATTAAAT
1 AAAATAAAAT
47406257 GGTCTCAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (17 bp):
AAAATAAAATTAAAATG
Found at i:47410184 original size:26 final size:26
Alignment explanation
Indices: 47410153--47410259 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
47410143 ATGAAATGCC
*
47410153 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
47410179 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
47410205 ATCATGGAATA-TTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
47410230 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
47410256 ATCA
1 ATCA
47410260 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:47410229 original size:51 final size:52
Alignment explanation
Indices: 47410153--47410259 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
47410143 ATGAAATGCC
47410153 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
47410205 ATCATGGAATA-TTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
47410256 ATCA
1 ATCA
47410260 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 43 0.81
52 10 0.19
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:47420095 original size:42 final size:42
Alignment explanation
Indices: 47420038--47420136 Score: 135
Period size: 42 Copynumber: 2.4 Consensus size: 42
47420028 GTGCAGGTTT
* * *
47420038 CACACGGCCAAGACACACGCCCATGTTCTAGGCTGTGTAGCA
1 CACACGGCTAAGACACACACCCATGTTCTAGGCCGTGTAGCA
* * *
47420080 CACACGGCTGAGACACACACCCGTGTTCTAGGCCGTGTAGCG
1 CACACGGCTAAGACACACACCCATGTTCTAGGCCGTGTAGCA
*
47420122 CACACAGCTAAGACA
1 CACACGGCTAAGACA
47420137 AAAACTCGTG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.27, C:0.33, G:0.24, T:0.15
Consensus pattern (42 bp):
CACACGGCTAAGACACACACCCATGTTCTAGGCCGTGTAGCA
Found at i:47420147 original size:42 final size:42
Alignment explanation
Indices: 47420061--47420152 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
47420051 CACACGCCCA
* * * * *
47420061 TGTTCTAGGCTGTGTAGCACACACGGCTGAGACACACACCCG
1 TGTTCTAGGCCGTGTAGCACACACAGCTAAGACAAAAACCCG
* *
47420103 TGTTCTAGGCCGTGTAGCGCACACAGCTAAGACAAAAACTCG
1 TGTTCTAGGCCGTGTAGCACACACAGCTAAGACAAAAACCCG
47420145 TGTCTCTA
1 TGT-TCTA
47420153 CCCGTATGCT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 38 0.90
43 4 0.10
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (42 bp):
TGTTCTAGGCCGTGTAGCACACACAGCTAAGACAAAAACCCG
Found at i:47427984 original size:40 final size:40
Alignment explanation
Indices: 47427931--47428079 Score: 246
Period size: 40 Copynumber: 3.7 Consensus size: 40
47427921 ACTACTTGCT
47427931 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
47427971 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
47428011 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
47428051 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
47428080 CATCCGAATA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 100 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:47435632 original size:38 final size:38
Alignment explanation
Indices: 47435555--47435726 Score: 237
Period size: 38 Copynumber: 4.6 Consensus size: 38
47435545 AGCTACTGCT
* *
47435555 CAAATGCCTTCGGGACATAGCCCGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATAGTAACTCGCA
47435594 CAAATGCCTTCGGGACTTAGCCCGAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATAGTAACTCGCA
*
47435632 CAAATG-CTTCGGGACTTAGCCGGAATAGT-ACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGAATAGTAACTCGCA
* * * *
47435667 CAAATGCCTTC--GACTTAGCCGGATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATAGTAACTCGCA
47435703 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
47435727 GTTATCATCA
Statistics
Matches: 122, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
34 16 0.13
35 11 0.09
36 21 0.17
37 22 0.18
38 30 0.25
39 22 0.18
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGAATAGTAACTCGCA
Found at i:47435704 original size:71 final size:75
Alignment explanation
Indices: 47435555--47435724 Score: 240
Period size: 71 Copynumber: 2.3 Consensus size: 75
47435545 AGCTACTGCT
* *
47435555 CAAATGCCTTCGGGACATAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAA
1 CAAATGCCTTCGGGACTTAG-CCGGAATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGAA
*
47435620 TAGTAACTCGCA
64 TAGTAACTAGCA
* *
47435632 CAAATG-CTTCGGGACTTAGCCGGAATAGT-ACTC-CACAAATGCCTTC-GACTTAGCCGGATTA
1 CAAATGCCTTCGGGACTTAGCCGGAATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGAATA
*
47435693 GTCACTAGCA
66 GTAACTAGCA
47435703 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
47435725 CGGTTATCAT
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
71 27 0.31
72 15 0.17
73 13 0.15
74 4 0.05
75 9 0.10
76 12 0.14
77 6 0.07
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (75 bp):
CAAATGCCTTCGGGACTTAGCCGGAATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGAATA
GTAACTAGCA
Found at i:47436190 original size:13 final size:13
Alignment explanation
Indices: 47436172--47436197 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47436162 ACCGAATACA
47436172 CATATCATTAACT
1 CATATCATTAACT
47436185 CATATCATTAACT
1 CATATCATTAACT
47436198 AAGCACTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
CATATCATTAACT
Found at i:47443430 original size:40 final size:40
Alignment explanation
Indices: 47443383--47443546 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
47443373 CGAGATTTAA
* * * *
47443383 CCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
47443423 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47443463 CTGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47443503 CCGGA-ACTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
47443543 CCGG
1 CCGG
47443547 TTATCATCCA
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
39 2 0.02
40 112 0.98
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47444868 original size:52 final size:52
Alignment explanation
Indices: 47444789--47444912 Score: 194
Period size: 52 Copynumber: 2.4 Consensus size: 52
47444779 CTCAAAGCTC
* * * *
47444789 TTTTTCCTTCCTTTTCTTTCTTTTATTCGGCCAAGAACAACATGGGAGCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
47444841 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
*
47444893 TTTTTTCTTTCTTTTCCTTT
1 TTTTTTC-TTCTTTTTCTTT
47444913 TTTCATCATT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
52 55 0.83
53 11 0.17
ACGTcount: A:0.15, C:0.22, G:0.10, T:0.52
Consensus pattern (52 bp):
TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
Found at i:47455631 original size:41 final size:40
Alignment explanation
Indices: 47455489--47455647 Score: 122
Period size: 41 Copynumber: 4.0 Consensus size: 40
47455479 ATGCTAATCG
* *
47455489 GGTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTGAGCCAGT
1 GGTCT-AATCCGAGCTTAGTCTCGAAGGCCTTTGAGCCAGT
* *
47455530 -G-CTAATAACCGA-CTTAGTTTC-AAGG-CTTTAAG-CAGT
1 GGTCTAAT--CCGAGCTTAGTCTCGAAGGCCTTTGAGCCAGT
47455566 -GTCATAA-CCG-GACTTAGT-TCCGAAGGACCTTTGAGCCAGT
1 GGTC-TAATCCGAG-CTTAGTCT-CGAAGG-CCTTTGAGCCAGT
* *
47455606 GGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GGTCTAATCCGAGCTTAGTCTCGAA-GGCCTTTGAGCCAGT
47455647 G
1 G
47455648 CTAAGAATCG
Statistics
Matches: 96, Mismatches: 6, Indels: 32
0.72 0.04 0.24
Matches are distributed among these distances:
35 4 0.04
36 12 0.12
37 11 0.11
38 10 0.10
39 15 0.16
40 12 0.12
41 28 0.29
42 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GGTCTAATCCGAGCTTAGTCTCGAAGGCCTTTGAGCCAGT
Found at i:47463848 original size:41 final size:41
Alignment explanation
Indices: 47463677--47463836 Score: 177
Period size: 41 Copynumber: 3.9 Consensus size: 41
47463667 GGGTCTAAAT
*
47463677 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCTAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
47463718 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* *
47463758 CCG-GACTTAGT-TCCGAAGGGCCTTTGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
47463799 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
47463837 GAATCGGGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
39 5 0.05
40 33 0.33
41 57 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:47465603 original size:17 final size:19
Alignment explanation
Indices: 47465577--47465613 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
47465567 TGTAAAACCC
47465577 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
47465595 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
47465613 A
1 A
47465614 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:47469353 original size:93 final size:93
Alignment explanation
Indices: 47469240--47469411 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
47469230 CGCCCATAAG
*
47469240 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
47469304 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
47469333 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
47469398 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
47469412 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:47469406 original size:46 final size:46
Alignment explanation
Indices: 47469233--47469408 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
47469223 TGTAACCCGC
* *
47469233 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
47469279 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
47469329 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
47469372 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
47469409 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:47469427 original size:46 final size:44
Alignment explanation
Indices: 47469241--47469427 Score: 139
Period size: 46 Copynumber: 4.0 Consensus size: 44
47469231 GCCCATAAGC
* * * * *
47469241 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAGT
*
47469287 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
47469334 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
47469380 GAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
47469426 GA
1 GA
47469428 CATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 3 0.03
46 60 0.53
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:47476921 original size:93 final size:93
Alignment explanation
Indices: 47476808--47476979 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
47476798 CGCCCAGAAG
*
47476808 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
47476872 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
47476901 CGAACTCGGACTCAACTCAACGGGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
47476966 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
47476980 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:47476974 original size:46 final size:46
Alignment explanation
Indices: 47476809--47476976 Score: 193
Period size: 46 Copynumber: 3.6 Consensus size: 46
47476799 GCCCAGAAGC
* *
47476809 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGT
* * *
47476855 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
*
47476902 GAACTCGGACTCAACTCAACGGGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
47476948 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
47476977 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 53 0.52
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:47479930 original size:21 final size:20
Alignment explanation
Indices: 47479906--47479947 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
47479896 TGCCTTGGAC
47479906 TAAATTGA-GTTTAAATTGTAT
1 TAAATTGATG-TTAAATT-TAT
47479927 TAAATTGATGTTAAATTTAT
1 TAAATTGATGTTAAATTTAT
47479947 T
1 T
47479948 TGTATAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (20 bp):
TAAATTGATGTTAAATTTAT
Found at i:47482524 original size:38 final size:38
Alignment explanation
Indices: 47482482--47482639 Score: 183
Period size: 38 Copynumber: 4.1 Consensus size: 38
47482472 ATTAAACTCA
* * *
47482482 GATATAATACCAGCACTAGGCCTACGGGATTTAACCCG
1 GATATAATACCAGCACCAAGCCTGCGGGATTTAACCCG
* *
47482520 GATATTATACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACCAAGCCTGCGGGATTTAACCCG
*
47482558 GATATATTACCAGCACCAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACCAAGCCTGCGGGATTTAACCCG
* ** * *
47482596 AATATAATTTCAGCA-TATAGCCTGCGGGTGTTTAAGCCCG
1 GATATAATACCAGCACCA-AGCCTGCGGG-ATTTAA-CCCG
47482636 GATA
1 GATA
47482640 CACATCAAAT
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 1 0.01
38 90 0.87
39 5 0.05
40 7 0.07
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (38 bp):
GATATAATACCAGCACCAAGCCTGCGGGATTTAACCCG
Found at i:47484358 original size:40 final size:40
Alignment explanation
Indices: 47484299--47484443 Score: 238
Period size: 40 Copynumber: 3.6 Consensus size: 40
47484289 CGGATGATAA
* * *
47484299 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
47484339 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47484379 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47484419 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47484444 AGCAAGTAGT
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47484458 original size:80 final size:80
Alignment explanation
Indices: 47484299--47484475 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
47484289 CGGATGATAA
* * *
47484299 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
* *
47484364 TGCGAGTTACTATAT
66 AGCAAGTTACTATAT
*
47484379 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTT
*
47484443 GAGCAAG-TAGTTATAT
65 GAGCAAGTTA-CTATAT
* *
47484459 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
47484476 ATGCTTGGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
79 18 0.21
80 68 0.79
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
AGCAAGTTACTATAT
Found at i:47484743 original size:22 final size:21
Alignment explanation
Indices: 47484702--47484745 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
47484692 GAATGTGCAT
47484702 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
47484724 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
47484746 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:47492308 original size:40 final size:40
Alignment explanation
Indices: 47492253--47492397 Score: 247
Period size: 40 Copynumber: 3.6 Consensus size: 40
47492243 CGGATGATAA
* *
47492253 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
47492293 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47492333 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
47492373 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47492398 AGCAAGTAGT
Statistics
Matches: 101, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 100 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47492412 original size:80 final size:80
Alignment explanation
Indices: 47492253--47492429 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 80
47492243 CGGATGATAA
* *
47492253 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
* *
47492318 TGCGAGTTACTATAT
66 AGCAAGTTACTATAT
*
47492333 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTT
*
47492397 GAGCAAG-TAGTTATAT
65 GAGCAAGTTA-CTATAT
* *
47492413 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
47492430 ATGCTTGGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 18 0.21
80 69 0.79
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
AGCAAGTTACTATAT
Found at i:47492696 original size:22 final size:21
Alignment explanation
Indices: 47492655--47492698 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
47492645 GAATGTGCAT
47492655 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
47492677 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
47492699 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:47500254 original size:42 final size:42
Alignment explanation
Indices: 47500198--47500296 Score: 135
Period size: 42 Copynumber: 2.4 Consensus size: 42
47500188 CACGAGTTTT
* * *
47500198 TGTCTTAGCTGTGTGCGCTACACGGCCTAGAACACGGGTGTG
1 TGTCTTAGCCGTGTGCGCTACACAGCCTAGAACACGGGCGTG
* * *
47500240 TGTCTCAGCCGTGTGTGCTACACAGCCTAGAACATGGGCGTG
1 TGTCTTAGCCGTGTGCGCTACACAGCCTAGAACACGGGCGTG
*
47500282 TGTCTTGGCCGTGTG
1 TGTCTTAGCCGTGTG
47500297 AAACCTGCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.15, C:0.24, G:0.33, T:0.27
Consensus pattern (42 bp):
TGTCTTAGCCGTGTGCGCTACACAGCCTAGAACACGGGCGTG
Found at i:47503798 original size:20 final size:19
Alignment explanation
Indices: 47503770--47503808 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
47503760 GGTGATGAAA
**
47503770 TAAATTTAGTTTTGATATG
1 TAAATTTAGCCTTGATATG
47503789 TAAATATTAGCCTTGATATG
1 TAAAT-TTAGCCTTGATATG
47503809 GTTGATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.46
Consensus pattern (19 bp):
TAAATTTAGCCTTGATATG
Found at i:47510263 original size:26 final size:26
Alignment explanation
Indices: 47510234--47510341 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
47510224 TGGTACAAAT
47510234 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
47510260 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
47510286 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
47510312 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
47510338 TGAT
1 TGAT
47510342 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:47516174 original size:31 final size:28
Alignment explanation
Indices: 47516139--47516195 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 28
47516129 CTAGGCACTT
47516139 CCACACGGGTGAGCCACACGCCCGTGTGTGA
1 CCACACGGGT-A-CC-CACGCCCGTGTGTGA
* *
47516170 CCACATGGGTACCCACGCCTGTGTGT
1 CCACACGGGTACCCACGCCCGTGTGT
47516196 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 2 0.08
30 1 0.04
31 9 0.38
ACGTcount: A:0.18, C:0.35, G:0.30, T:0.18
Consensus pattern (28 bp):
CCACACGGGTACCCACGCCCGTGTGTGA
Found at i:47528928 original size:41 final size:41
Alignment explanation
Indices: 47528883--47529051 Score: 139
Period size: 41 Copynumber: 4.1 Consensus size: 41
47528873 GCACAAACAT
* *
47528883 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
47528924 CCTTC-GAGACCAAGCTCGGATTA-GACCACTGGCTCAAAGGT
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * *
47528965 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* * ** * *
47529005 CCTTTGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
47529046 CCTTCG
1 CCTTCG
47529052 AGACCAAGCT
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
40 40 0.39
41 55 0.54
42 7 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:47529016 original size:40 final size:41
Alignment explanation
Indices: 47528909--47529052 Score: 159
Period size: 41 Copynumber: 3.5 Consensus size: 41
47528899 CGATTCTTAG
* *
47528909 CACTGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATGAC
* * *
47528950 CACTGGCTCAAAGGTCCTTCGGAACTAAGTCCGGTTATGA-
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATGAC
* * * * *
47528990 CACTGGCTCTAAAGCCCTTTGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATGAC
47529031 CACTGGCTCAAAAGCCCTTCGA
1 CACTGGCTCAAAAGCCCTTCGA
47529053 GACCAAGCTC
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 36 0.42
41 49 0.57
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATGAC
Found at i:47546020 original size:43 final size:43
Alignment explanation
Indices: 47545864--47546021 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
47545854 ATGTGTTTTT
** * *
47545864 GTGTAAGACCACGTTTGGGACGTTGGCATCGA-ATTGAGATTTAC
1 GTGTAAGACCATATCTGGGACGTTGGCATCGATATT-TGA-TTAC
* * * * * **
47545908 GTGTAAGACCATGTCTGGGACATCGACATC-ATATTTAATTTT
1 GTGTAAGACCATATCTGGGACGTTGGCATCGATATTTGATTAC
* *
47545950 GTGTAAGACCCTATTTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCATATCTGGGAC-GTTGGCATCGATATTTGATTAC
* *
47545993 ATGTAAGACCATATCTGGGATGTTGGCAT
1 GTGTAAGACCATATCTGGGACGTTGGCAT
47546022 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
42 26 0.30
43 34 0.39
44 28 0.32
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:47550422 original size:34 final size:34
Alignment explanation
Indices: 47550379--47550480 Score: 195
Period size: 34 Copynumber: 3.0 Consensus size: 34
47550369 TGTTAGTACA
*
47550379 ACCAGAATTGGGTAAAGAATTTGTGATCTATGGT
1 ACCAGAATTGGGTAAAGAATTTGTGATCTATAGT
47550413 ACCAGAATTGGGTAAAGAATTTGTGATCTATAGT
1 ACCAGAATTGGGTAAAGAATTTGTGATCTATAGT
47550447 ACCAGAATTGGGTAAAGAATTTGTGATCTATAGT
1 ACCAGAATTGGGTAAAGAATTTGTGATCTATAGT
47550481 GATGCTTCAT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.32
Consensus pattern (34 bp):
ACCAGAATTGGGTAAAGAATTTGTGATCTATAGT
Found at i:47553706 original size:46 final size:46
Alignment explanation
Indices: 47553653--47553828 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
47553643 TGGTTGAGCA
*
47553653 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47553699 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
47553744 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
47553792 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47553829 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47553809 original size:93 final size:93
Alignment explanation
Indices: 47553650--47553821 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
47553640 GGATGGTTGA
* * *
47553650 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAACTCATTGAGT
47553715 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
47553743 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAACTCATTGAGT
47553808 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
47553822 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47556219 original size:42 final size:43
Alignment explanation
Indices: 47556156--47556267 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
47556146 TCGATCTGAG
47556156 ATTTACATGTAAGACCATGTCTGGGACATCG-G-CATCG-TATTTA
1 ATTT-CATGTAAGACCATGTCTGGGAC-T-GTGACATCGATATTTA
* * *
47556199 ATTTCATGTAAGACCCTGTCTAGGACTGTGACATCGATATTTG
1 ATTTCATGTAAGACCATGTCTGGGACTGTGACATCGATATTTA
* *
47556242 ATTACATGTAAGACCATATCTGGGAC
1 ATTTCATGTAAGACCATGTCTGGGAC
47556268 GTTGGCATTG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.02
41 2 0.03
42 25 0.42
43 31 0.53
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (43 bp):
ATTTCATGTAAGACCATGTCTGGGACTGTGACATCGATATTTA
Found at i:47556254 original size:43 final size:42
Alignment explanation
Indices: 47556158--47556267 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
47556148 GATCTGAGAT
*
47556158 TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTTAA
1 TTACATGTAAGACCATGTCTAGGACATCGGCATCGTATTTAA
* * *
47556200 TTTCATGTAAGACCCTGTCTAGGAC-T-GTGACATCGATATTTGA
1 TTACATGTAAGACCATGTCTAGGACATCG-G-CATCG-TATTTAA
* *
47556243 TTACATGTAAGACCATATCTGGGAC
1 TTACATGTAAGACCATGTCTAGGAC
47556268 GTTGGCATTG
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
40 1 0.02
41 2 0.04
42 27 0.47
43 27 0.47
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTAGGACATCGGCATCGTATTTAA
Found at i:47562753 original size:29 final size:29
Alignment explanation
Indices: 47562686--47562810 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
47562676 AAGTCTACAT
* *
47562686 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
47562714 TCATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
47562743 ACATTCGTATGACCCATTAGGCCCAAATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
47562772 ACATTCATATGGACCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
47562801 ACATTCATAT
1 ACATTCATAT
47562811 ACATGCTTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.24
29 63 0.76
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:47564626 original size:122 final size:122
Alignment explanation
Indices: 47564409--47564654 Score: 492
Period size: 122 Copynumber: 2.0 Consensus size: 122
47564399 GAAAAAACCC
47564409 TAGCCTCCCTTACACTACTTCTCCATGTCGGCAGGTATGTCGTCTGACCCCTTTGCCACCACGGT
1 TAGCCTCCCTTACACTACTTCTCCATGTCGGCAGGTATGTCGTCTGACCCCTTTGCCACCACGGT
47564474 CTGCCACTCCTACAACCTTTGCCCTGTACCTTCAGACAAAACAAACACGCAACAGCA
66 CTGCCACTCCTACAACCTTTGCCCTGTACCTTCAGACAAAACAAACACGCAACAGCA
47564531 TAGCCTCCCTTACACTACTTCTCCATGTCGGCAGGTATGTCGTCTGACCCCTTTGCCACCACGGT
1 TAGCCTCCCTTACACTACTTCTCCATGTCGGCAGGTATGTCGTCTGACCCCTTTGCCACCACGGT
47564596 CTGCCACTCCTACAACCTTTGCCCTGTACCTTCAGACAAAACAAACACGCAACAGCA
66 CTGCCACTCCTACAACCTTTGCCCTGTACCTTCAGACAAAACAAACACGCAACAGCA
47564653 TA
1 TA
47564655 AAGGCAACAA
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 124 1.00
ACGTcount: A:0.24, C:0.37, G:0.15, T:0.24
Consensus pattern (122 bp):
TAGCCTCCCTTACACTACTTCTCCATGTCGGCAGGTATGTCGTCTGACCCCTTTGCCACCACGGT
CTGCCACTCCTACAACCTTTGCCCTGTACCTTCAGACAAAACAAACACGCAACAGCA
Found at i:47570293 original size:40 final size:39
Alignment explanation
Indices: 47570249--47570442 Score: 253
Period size: 40 Copynumber: 4.9 Consensus size: 39
47570239 GGATATAGCT
* * * *
47570249 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
47570289 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
47570329 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
47570369 ACCCGCACAAATGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
*
47570409 GCTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
47570443 ATCATCCGAA
Statistics
Matches: 138, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
41 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:47580085 original size:27 final size:27
Alignment explanation
Indices: 47580051--47580174 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
47580041 TAAATTGTAC
* * *
47580051 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47580078 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47580106 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47580133 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47580160 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47580175 GACTCAATAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 62 0.73
28 23 0.27
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47580113 original size:55 final size:54
Alignment explanation
Indices: 47580051--47580174 Score: 158
Period size: 55 Copynumber: 2.3 Consensus size: 54
47580041 TAAATTGTAC
* * *
47580051 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATAT
* ** * *
47580106 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
*
47580160 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47580175 GACTCAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 22 0.37
55 38 0.63
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:47603849 original size:27 final size:27
Alignment explanation
Indices: 47603815--47603936 Score: 145
Period size: 27 Copynumber: 4.5 Consensus size: 27
47603805 TAAATTGTAC
* * *
47603815 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47603842 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47603870 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47603897 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47603924 AGCACTGAGTGTG
1 AGCACTAAGTGTG
47603937 TGGACTCAAT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 60 0.72
28 23 0.28
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47603877 original size:55 final size:54
Alignment explanation
Indices: 47603815--47603936 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 54
47603805 TAAATTGTAC
* * *
47603815 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATAT
* ** * *
47603870 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
*
47603924 AGCACTGAGTGTG
1 AGCACTAAGTGTG
47603937 TGGACTCAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
54 20 0.34
55 38 0.66
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:47605405 original size:41 final size:40
Alignment explanation
Indices: 47605294--47605486 Score: 262
Period size: 40 Copynumber: 4.8 Consensus size: 40
47605284 TTACATAGCT
* * * * *
47605294 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
*
47605334 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
* *
47605374 ACTCGCACCAAATGCCTTTGGGACTTGGCCCGGATTTGGTA
1 ACTCGCA-CAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
* *
47605415 AGTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
*
47605455 GCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
47605487 TTATCATCCG
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 99 0.72
41 38 0.28
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
Found at i:47605421 original size:81 final size:80
Alignment explanation
Indices: 47605294--47605486 Score: 262
Period size: 81 Copynumber: 2.4 Consensus size: 80
47605284 TTACATAGCT
* * * * * *
47605294 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGG-TTATAGTAACTCGCACCAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TGGTAACTCGCACAAATGCCTTCGGGACT
*
47605358 TAGCCCGGATTTGGTA
65 TAGCCCGGATTTAGTA
* * *
47605374 ACTCGCACCAAATGCCTTTGGGACTTGGCCCGGATTTGGTAAGTCGCACAAATGCCTTCGGGACT
1 ACTCGCA-CAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCACAAATGCCTTCGGGACT
47605439 TAGCCCGGATTTAGTA
65 TAGCCCGGATTTAGTA
*
47605455 GCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
47605487 TTATCATCCG
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
80 29 0.30
81 67 0.68
82 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTAGTA
Found at i:47607844 original size:19 final size:19
Alignment explanation
Indices: 47607820--47607866 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
47607810 AATGCCTCTT
*
47607820 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
47607839 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
47607858 TATGCATTA
1 TTTGCATTA
47607867 AATTTCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:47614448 original size:50 final size:50
Alignment explanation
Indices: 47614327--47614606 Score: 276
Period size: 50 Copynumber: 5.6 Consensus size: 50
47614317 ATTGTGAGAA
* * *** *
47614327 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
**
47614379 CATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * ***
47614429 CGCATGTGTAGTACAAAGTGCAGGCTACTATGCGTACCTGATAACTTCCAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTAGGT
* * *
47614480 CACATATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** ** *
47614530 CATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
*
47614579 CGA-TTGTGTAGTACTAAGTGCAGGCTAC
1 C-ACATGTGTAGTACTAAGTGCAGGCTAC
47614607 CATGCTTACC
Statistics
Matches: 187, Mismatches: 39, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
49 28 0.15
50 84 0.45
51 39 0.21
52 36 0.19
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:47614780 original size:19 final size:19
Alignment explanation
Indices: 47614756--47614797 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
47614746 GGTATATGTT
47614756 TGTGGAATTTTATGAGCAA
1 TGTGGAATTTTATGAGCAA
*
47614775 TGTGGAATTTTTTGAGCAA
1 TGTGGAATTTTATGAGCAA
47614794 TGTG
1 TGTG
47614798 CTTGATAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.29, T:0.40
Consensus pattern (19 bp):
TGTGGAATTTTATGAGCAA
Found at i:47617916 original size:48 final size:50
Alignment explanation
Indices: 47617753--47617927 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 50
47617743 CAAGGCCGAC
* * * * * *
47617753 GCCATGTCCCAGACATGGTCTTACACTGACTA-TCA-AAAT-CGAGGCCGAC
1 GCCATGTCCCAAACATGGTCTTACACTGGC-ACTCACATATCCG-TGCCAAT
* * *
47617802 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCGTGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCACTCACATATCCGTGCCAAT
* * * *
47617852 GCCATGTCCCATACATGGTCTTACACTGGCAC-CTC-TATGCGTGTCAAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCACTCACATATCCGTGCCAAT
47617900 GCCATGTCCCAAACATGGTCTTACACTG
1 GCCATGTCCCAAACATGGTCTTACACTG
47617928 ACACATCTCG
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
48 37 0.34
49 32 0.30
50 37 0.34
51 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTGGCACTCACATATCCGTGCCAAT
Found at i:47618083 original size:94 final size:92
Alignment explanation
Indices: 47617943--47618112 Score: 234
Period size: 94 Copynumber: 1.8 Consensus size: 92
47617933 TCTCGTAACT
** *
47617943 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCCGATGCATGTCCTAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
47618008 TCTTACACTAGCTCTAGTCTAAATGTC
66 TCTTACACTAGCTCTAGTCTAAATGTC
* * * *
47618035 GATGCCATGTCCTAGACATGGTCTTATATTGGCTCT-CATAATGTGGCCGATGCATGTCCCAGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAATGAGGCCGATGCATGTCCCAGAC
*
47618099 ATGTGTTACACTAG
63 ATGTCTTACACTAG
47618113 AATACAAATA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 49 0.73
95 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTCTAGTCTAAATGTC
Found at i:47618086 original size:48 final size:48
Alignment explanation
Indices: 47617654--47618110 Score: 254
Period size: 49 Copynumber: 9.6 Consensus size: 48
47617644 GTATAATGTT
* * * *
47617654 GATGCCATGTCCTAAACATGGTCTTACATTGGCTCATCCATCAA-GT---A
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGTGGCC
* * * * * **
47617701 GATGCCATTTCCCAGACATGGTCTTACATTGACTATCAAAATCAAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
* * * * *
47617750 GACGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
* * * *
47617799 GACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCGT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT--GTGGCC
* * * *
47617849 GATGCCATGTCCCATACATGGTCTTACACTGGCACCTC-T-ATGCGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATAATGTG-GCC
* * * * * ** *
47617897 AATGCCATGTCCCAAACATGGTCTTACACTGACACATC-T--CGTAACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCC
** *
47617943 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCC
* *
47617989 GATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-AGTCTAAATGT---C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA---T-AATGTGGCC
* * *
47618035 GATGCCATGTCCTAGACATGGTCTTATATTGGCTCTCATAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
*
47618083 GATG-CATGTCCCAGACAT-GTGTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
47618111 AGAATACAAA
Statistics
Matches: 327, Mismatches: 57, Indels: 53
0.75 0.13 0.12
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 15 0.05
45 21 0.06
46 50 0.15
47 60 0.18
48 56 0.17
49 83 0.25
50 35 0.11
51 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
Found at i:47625558 original size:40 final size:40
Alignment explanation
Indices: 47625476--47625696 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
47625466 ACCCAAGTCT
** * *
47625476 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
47625514 CTTCGGGTCTTAGCCTGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
47625554 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
47625594 CTTCAGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
47625634 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
47625675 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
47625697 CATTCGAATA
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 14 0.09
40 94 0.63
41 29 0.19
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:47629966 original size:32 final size:32
Alignment explanation
Indices: 47629930--47629996 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
47629920 ACGAAAACTC
47629930 AGTGTGTAATCCCTTATCAGACTATAGAAAAT
1 AGTGTGTAATCCCTTATCAGACTATAGAAAAT
47629962 AGTGTGTAATCCCTTATCAGACTATAGAAAAT
1 AGTGTGTAATCCCTTATCAGACTATAGAAAAT
47629994 AGT
1 AGT
47629997 CTATGCAGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (32 bp):
AGTGTGTAATCCCTTATCAGACTATAGAAAAT
Found at i:47630245 original size:26 final size:26
Alignment explanation
Indices: 47630202--47630252 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
47630192 ACCAGCACAC
* *
47630202 CAATATCGCAGCAAAGCTACTAGTAA
1 CAATAACGCAGCAAAGCTACCAGTAA
**
47630228 CAATAACGCAGCGTAGCTACCAGTA
1 CAATAACGCAGCAAAGCTACCAGTA
47630253 GCAGTAAGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTACCAGTAA
Found at i:47634926 original size:58 final size:58
Alignment explanation
Indices: 47634836--47634951 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
47634826 TTCTATGCTC
*
47634836 ACCTAAGTATAAAATATGAAATTAAGGCATTAGGAGCATCAAATTCACCAATTCTAAG
1 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCATCAAATTCACCAATTCTAAG
47634894 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCATCAAATTCACCAATTCTAAG
1 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCATCAAATTCACCAATTCTAAG
47634952 GGAAAATAAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (58 bp):
ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCATCAAATTCACCAATTCTAAG
Found at i:47637822 original size:45 final size:45
Alignment explanation
Indices: 47637734--47638419 Score: 297
Period size: 45 Copynumber: 14.8 Consensus size: 45
47637724 GATTACGAGC
* * * * * *
47637734 CTTATTTCCTTGAAGTTGTAGTGGAACAGATTGACGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * *
47637779 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGATTGCAAATTACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-T----A--GCAAAT
* * * * * * * *
47637831 CTTGTCTCCCTAAAGTTGTAGTAGAACAAATTAAAGTTA-CAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * * * * *
47637875 CTTATCCCCCTAAAGTTGCAGTGGAGTAGATCAAATATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
** * * * * ** * *
47637920 CGCATTTTCTTGAAGTTGTAGTGGAATAGATTAAAGCTACAAACCACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG----ATA--GCAAAT
* *
47637971 CTTATCTCCCTCAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * ** * *
47638016 CTTATCTCTCTGAATTTGCAGCAGAGCAGATTAAAGTTA-TAAA-
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * *
47638059 CATTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGAAAAT
1 C-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * * * *
47638105 CTTATCTCTCTAAAGTTGCAGTAGAGCATATTAAAGCT-GCAAATT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAA-T
* * * * * *
47638150 ACAAGTCATATCTCCTTGAAGTTACAGTGGAGCAGACTGAATATAGCGAAT
1 -C---T--TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * * * *
47638201 CTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGATTGCAAATTACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-T----A--GCAAAT
* ** * * * * *
47638253 CTTGTCTCCCAAAAGTTGTAGTGGAGTAGATTGAAGTTA-CAAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * * ** *
47638297 CTTATCCCCCTGAAGTTGCAATGGAGTAGATCGAAGATAGTAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * * *** ** *
47638342 CTTATCTCTCTAAAGTTACAGAATAGCAGATT-AACTTA-CTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
* * *
47638385 CTTATCTCCCTAAAGTTGCAGTAGAGTAGATTAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
47638420 ATTAAATTCC
Statistics
Matches: 474, Mismatches: 133, Indels: 69
0.70 0.20 0.10
Matches are distributed among these distances:
43 31 0.07
44 112 0.24
45 186 0.39
46 4 0.01
47 5 0.01
49 3 0.01
50 3 0.01
51 59 0.12
52 71 0.15
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAAT
Found at i:47638047 original size:96 final size:96
Alignment explanation
Indices: 47637947--47638316 Score: 333
Period size: 96 Copynumber: 3.9 Consensus size: 96
47637937 GTAGTGGAAT
** * *
47637947 AGATTAAAGCTACAAACCACAAATCTTATCTCCCTCAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 AGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * *
47638012 AAATCTTATCTCTCTGAATTTGCAGCAGAGC
66 AAATCTTATCTCCCTAAAGTTGCAGTAGAGC
* * * * *
47638043 AGATTAAAGTTA-TAA--AC--A--TTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGA
1 AGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
*
47638101 AAATCTTATCTCTCTAAAGTTGCAGTAGAGC
66 AAATCTTATCTCCCTAAAGTTGCAGTAGAGC
* * * * * * *
47638132 ATATTAAAGCTGCAAATTACAAGTCATATCTCCTTGAAGTTACAGTGGAGCAGACTGAATATAGC
1 AGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * * *
47638197 GAATCTTATTTCCCTAAAGTTACAGTGGAAC
66 AAATCTTATCTCCCTAAAGTTGCAGTAGAGC
* * * ** * * * *
47638228 AGATTAAAGATTGCAAATTACAAATCTTGTCTCCCAAAAGTTGTAGTGGAGTAGATTGAAGTTA-
1 AGATTAAAG-CTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
* * *
47638292 CAAAGCTTATCCCCCTGAAGTTGCA
65 CAAATCTTATCTCCCTAAAGTTGCA
47638317 ATGGAGTAGA
Statistics
Matches: 218, Mismatches: 48, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
89 72 0.33
90 2 0.01
91 1 0.00
92 2 0.01
93 2 0.01
95 2 0.01
96 96 0.44
97 41 0.19
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (96 bp):
AGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
AAATCTTATCTCCCTAAAGTTGCAGTAGAGC
Found at i:47638124 original size:89 final size:89
Alignment explanation
Indices: 47637972--47638140 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 89
47637962 ACCACAAATC
* * * * * *
47637972 TTATCTCCCTCAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAATTTGCAG
1 TTATCTCCCTCAAGTTGCAGTGGAGCAAACTAAAGATAGAAAATCTTATCTCTCTAAAGTTGCAG
47638037 CAGAGCAGATTAAAGTTATAAACA
66 CAGAGCAGATTAAAGTTATAAACA
*
47638061 TTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGAAAATCTTATCTCTCTAAAGTTGCAG
1 TTATCTCCCTCAAGTTGCAGTGGAGCAAACTAAAGATAGAAAATCTTATCTCTCTAAAGTTGCAG
* *
47638126 TAGAGCATATTAAAG
66 CAGAGCAGATTAAAG
47638141 CTGCAAATTA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (89 bp):
TTATCTCCCTCAAGTTGCAGTGGAGCAAACTAAAGATAGAAAATCTTATCTCTCTAAAGTTGCAG
CAGAGCAGATTAAAGTTATAAACA
Found at i:47638362 original size:141 final size:141
Alignment explanation
Indices: 47637744--47638358 Score: 426
Period size: 141 Copynumber: 4.4 Consensus size: 141
47637734 CTTATTTCCT
* * ** * *
47637744 TGAAGTTGTAGTGGAACAGATTGACGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
1 TGAAGTTGCAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGA
* * * * * *
47637809 TTAAAGATTGCAAATTACAAATCTTGTCTCCCTAAAGTTGTAGTAGAACAAATTAAAGTTACAGA
66 TTAAAGATTGCAAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTACAAA
*
47637874 TCTTATCCCCC
131 GCTTATCCCCC
* * * * ** * * * * *
47637885 TAAAGTTGCAGTGGAGTAGATCAAATATAGCGAATCGCATTTTCTTGAAGTTGTAGTGGAATAGA
1 TGAAGTTGCAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGA
* * ** * * *
47637950 TTAAAG-CTACAAACCACAAATCTTATCTCCCTCAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
66 TTAAAGATTGCAAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTA-CAA
* * *
47638014 ATCTTATCTCTC
130 AGCTTATCCCCC
* ** * * * * *
47638026 TGAATTTGCAGCAGAGCAGATTAAAGTTA-TAAA-CATTATCTCCCTGAAGTTGCAGTGGAGCAA
1 TGAAGTTGCAGTGGAGCAGATCAAAGATAGCAAATC-TTATCTCCCTGAAGTTGCAGTGGAACAG
* * * * *
47638089 ACTAAAGA-T----A-GA-AAATCTTATCTCTCTAAAGTTGCAGTAGAGCATATTAAAGCTGCAA
65 ATTAAAGATTGCAAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGC-----AAA-TTG-AA
* * * *
47638147 ATTAC-AAGTCATATCTCCT
123 GTTACAAAG-CTTATCCCCC
* * * * * * *
47638166 TGAAGTTACAGTGGAGCAGA-CTGAATATAGCGAATCTTATTTCCCTAAAGTTACAGTGGAACAG
1 TGAAGTTGCAGTGGAGCAGATC-AAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAG
* * * * *
47638230 ATTAAAGATTGCAAATTACAAATCTTGTCTCCCAAAAGTTGTAGTGGAGTAGATTGAAGTTACAA
65 ATTAAAGATTGCAAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTACAA
47638295 AGCTTATCCCCC
130 AGCTTATCCCCC
* * * * * *
47638307 TGAAGTTGCAATGGAGTAGATCGAAGATAGTAAATCTTATCTCTCTAAAGTT
1 TGAAGTTGCAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTT
47638359 ACAGAATAGC
Statistics
Matches: 352, Mismatches: 99, Indels: 46
0.71 0.20 0.09
Matches are distributed among these distances:
134 28 0.08
135 1 0.00
136 1 0.00
139 5 0.01
140 100 0.28
141 180 0.51
142 8 0.02
143 2 0.01
146 1 0.00
147 1 0.00
148 25 0.07
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (141 bp):
TGAAGTTGCAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGA
TTAAAGATTGCAAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTACAAA
GCTTATCCCCC
Found at i:47640388 original size:20 final size:20
Alignment explanation
Indices: 47640363--47640404 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
47640353 CTTCAAGATA
47640363 GTCGTACCATAACTTACGGG
1 GTCGTACCATAACTTACGGG
47640383 GTCGTACCATAACTTACGGG
1 GTCGTACCATAACTTACGGG
47640403 GT
1 GT
47640405 TTTGATTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (20 bp):
GTCGTACCATAACTTACGGG
Found at i:47641559 original size:25 final size:25
Alignment explanation
Indices: 47641526--47641583 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
47641516 ACAATCTGTG
*
47641526 AATCGGTATGCTCTCACAAGCTACA
1 AATCAGTATGCTCTCACAAGCTACA
* * *
47641551 TATCAGTATGCTCTCACGAGCTATA
1 AATCAGTATGCTCTCACAAGCTACA
47641576 AATCAGTA
1 AATCAGTA
47641584 ACCCTAATGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (25 bp):
AATCAGTATGCTCTCACAAGCTACA
Found at i:47647514 original size:47 final size:50
Alignment explanation
Indices: 47647441--47647571 Score: 161
Period size: 48 Copynumber: 2.7 Consensus size: 50
47647431 TCACTCGTGT
47647441 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACAT-TA-TGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACACATATACT-A
*
47647487 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCTG-CACACATATACTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACACACATATACTA
* *
47647537 GA-CTTGTGTAA-ACCATGTATGGGACATGGCATCGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA
47647572 TGTCTGGCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
46 13 0.18
47 15 0.20
48 27 0.36
49 13 0.18
50 5 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (50 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACACATATACTA
Found at i:47664907 original size:17 final size:18
Alignment explanation
Indices: 47664885--47664919 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
47664875 TCACATTGAA
47664885 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
47664902 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
47664920 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:47667148 original size:46 final size:43
Alignment explanation
Indices: 47667005--47667140 Score: 105
Period size: 46 Copynumber: 3.0 Consensus size: 43
47666995 CCCGCCCCTA
*
47667005 AGTGAACTCGGACTCAACTCAACGCGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * * *
47667052 CA-CGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAACCATT
47667098 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
47667141 CCTAGTGACA
Statistics
Matches: 70, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
44 9 0.13
45 2 0.03
46 26 0.37
47 26 0.37
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:47668805 original size:29 final size:29
Alignment explanation
Indices: 47668722--47668834 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 29
47668712 CCTATATCTA
* *
47668722 GCCCATTAAGCCC-AATCATATTCATATG
1 GCCCATTAGGCCCAAATCATATTTATATG
* * ** *
47668750 GCACATTACGCCCAAATCACCTGTATATG
1 GCCCATTAGGCCCAAATCATATTTATATG
*
47668779 GCCCATTAGGCCCAAATAATATTTATATG
1 GCCCATTAGGCCCAAATCATATTTATATG
* *
47668808 GCCCGTTAGGCCC-AATCACATTTATAT
1 GCCCATTAGGCCCAAATCATATTTATAT
47668835 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
28 23 0.33
29 46 0.67
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCATATTTATATG
Found at i:47668834 original size:57 final size:57
Alignment explanation
Indices: 47668722--47668834 Score: 138
Period size: 57 Copynumber: 2.0 Consensus size: 57
47668712 CCTATATCTA
* *
47668722 GCCCATTAAGCCCAATCATATTCATATGGCACATTACGCCCAAATCACCTGTATATG
1 GCCCATTAAGCCCAATAATATTCATATGGCACATTACGCCCAAATCACATGTATATG
* * * * * *
47668779 GCCCATTAGGCCCAAATAATATTTATATGGCCCGTTAGGCCC-AATCACATTTATAT
1 GCCCATTAAGCCC-AATAATATTCATATGGCACATTACGCCCAAATCACATGTATAT
47668835 TCATGCTCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (57 bp):
GCCCATTAAGCCCAATAATATTCATATGGCACATTACGCCCAAATCACATGTATATG
Found at i:47672440 original size:8 final size:8
Alignment explanation
Indices: 47672421--47672484 Score: 67
Period size: 8 Copynumber: 8.1 Consensus size: 8
47672411 TGTAGCCAAA
47672421 CTTTT-GG
1 CTTTTCGG
*
47672428 CTTTTCAG
1 CTTTTCGG
47672436 CTTTTCGG
1 CTTTTCGG
47672444 CTTTTCGG
1 CTTTTCGG
* *
47672452 CTTTTTGA
1 CTTTTCGG
*
47672460 CTTTTCGA
1 CTTTTCGG
*
47672468 CATTTCGG
1 CTTTTCGG
*
47672476 CATTTCGG
1 CTTTTCGG
47672484 C
1 C
47672485 ATTACGACTT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
7 5 0.10
8 44 0.90
ACGTcount: A:0.08, C:0.23, G:0.20, T:0.48
Consensus pattern (8 bp):
CTTTTCGG
Found at i:47672993 original size:13 final size:13
Alignment explanation
Indices: 47672971--47673003 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47672961 AAGGGTTTGT
47672971 TTAT-TAAACTAA
1 TTATCTAAACTAA
47672983 TTATCTAAACTAA
1 TTATCTAAACTAA
*
47672996 TTAACTAA
1 TTATCTAA
47673004 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:47675970 original size:4 final size:4
Alignment explanation
Indices: 47675961--47675987 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
47675951 ATAAAAATAA
47675961 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
47675988 ATAAGACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:47684057 original size:29 final size:29
Alignment explanation
Indices: 47683968--47684077 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
47683958 TACTTGTATC
* *
47683968 TGGCCCATTAAGCCC-AATCATATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTATG
* *
47683996 TGGCCCATTAGGCCCAAATCACCTGTT-TA
1 TGGCCCATTAGGCCCAAATCACAT-TTATG
*
47684025 TGGCCCATTAGGCCCAAATCAGATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTATG
* *
47684054 TGGCCCGTTAGGCCC-AGTCACATT
1 TGGCCCATTAGGCCCAAATCACATT
47684078 CATATTCATG
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.33
29 44 0.64
30 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATG
Found at i:47696124 original size:45 final size:45
Alignment explanation
Indices: 47695922--47696149 Score: 180
Period size: 45 Copynumber: 5.0 Consensus size: 45
47695912 TCACTCGTTT
* * * * *
47695922 GAGCTAGTGTAAGACATGCCTGGGACATGCATCGACCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-A
* * *
47695968 GAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGG-TATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGAT-A
* * * *
47696016 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGACA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATA
* * *
47696061 TAGCTAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATA
* *
47696105 GTGCCAGTGTAAGACCATGTCTGCGACATGGCATCGGC-AC-AGATA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATA
47696150 TACTAGACTT
Statistics
Matches: 147, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
44 16 0.11
45 52 0.35
46 31 0.21
47 24 0.16
48 23 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATA
Found at i:47696179 original size:139 final size:138
Alignment explanation
Indices: 47695923--47696183 Score: 314
Period size: 139 Copynumber: 1.9 Consensus size: 138
47695913 CACTCGTTTG
* *
47695923 AGCTAGTGTAAGACATGCCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGT
1 AGCTAATGTAAGACATGCCTGGGACATGCATCGACCACATGAT-AGAGCCAGTGTAAGACCATGT
* ** * *
47695988 CTAGAACATGGCATCGGTATTGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
65 CTAGAACATGGCATCGGCACAGAGATGACTGCTAGTGTAAGACATGTATGGGACATGCATCGGCC
47696053 TCAAGACAT
130 TCAAGACAT
* * * *
47696062 AGCTAATGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GTGCCAGTGTAAGACCATGT
1 AGCTAATGTAAGACATGCCTGGGACATGCATCGACCAC-ATGATAGAGCCAGTGTAAGACCATGT
* * *
47696125 CT-GCGACATGGCATCGGCACAGATAT-ACTAGACTTGTGTAAGACCATGTATGGGACATG
65 CTAG-AACATGGCATCGGCACAGAGATGACT-G-CTAGTGTAAGA-CATGTATGGGACATG
47696184 GCGTCAATGT
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
136 3 0.03
137 39 0.38
138 10 0.10
139 50 0.49
140 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (138 bp):
AGCTAATGTAAGACATGCCTGGGACATGCATCGACCACATGATAGAGCCAGTGTAAGACCATGTC
TAGAACATGGCATCGGCACAGAGATGACTGCTAGTGTAAGACATGTATGGGACATGCATCGGCCT
CAAGACAT
Found at i:47698608 original size:40 final size:40
Alignment explanation
Indices: 47698557--47698650 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
47698547 CTCAGTACCA
* * **
47698557 CACACTTAGTGCCACT-TATAGCCGAAGTTAT-TCCAATTCG
1 CACACTAAGTGCCA-TATATAGCCGAAGCTATCT-CAAAACG
*
47698597 CACACTAAGTGCTATATATAGCCGAAGCTATCTCAAAACG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAAACG
47698637 CACACTAAGTGCCA
1 CACACTAAGTGCCA
47698651 AACTTAATCG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.02
40 44 0.96
41 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAAACG
Found at i:47702051 original size:25 final size:25
Alignment explanation
Indices: 47702023--47702082 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
47702013 ATGCTCATAT
** *
47702023 GAGCTGTGAATTGGTATGCTAACAC
1 GAGCTGTGAATCAGTATACTAACAC
* *
47702048 GAGCTGTAAATCAGTATACTCACAC
1 GAGCTGTGAATCAGTATACTAACAC
*
47702073 AAGCTGTGAA
1 GAGCTGTGAA
47702083 AATGGGTCTG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (25 bp):
GAGCTGTGAATCAGTATACTAACAC
Found at i:47705710 original size:42 final size:42
Alignment explanation
Indices: 47705598--47705749 Score: 189
Period size: 42 Copynumber: 3.6 Consensus size: 42
47705588 TACCATACCA
* * * *
47705598 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
47705640 ATGCCAATAGCCCA-ACTATGGTCTTACACGAAATCTCTTATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGAAATCTCATATCG
* * *
47705683 ATACCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
47705725 ATGCCATATCCAAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
47705750 AACATAAACT
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 60 0.62
43 36 0.38
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:47713368 original size:16 final size:17
Alignment explanation
Indices: 47713344--47713382 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
47713334 TTAAATTTTA
47713344 AAAATATTAAAATTA-TT
1 AAAA-ATTAAAATTATTT
47713361 AAAAATTAAAATTATTT
1 AAAAATTAAAATTATTT
47713378 AAAAA
1 AAAAA
47713383 AGTATAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAATTAAAATTATTT
Found at i:47713379 original size:10 final size:9
Alignment explanation
Indices: 47713336--47713381 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
47713326 TTAATTTTTT
47713336 AAATT-TTA
1 AAATTATTA
*
47713344 AAAATATTA
1 AAATTATTA
47713353 AAATTATTA
1 AAATTATTA
47713362 AAA--ATTA
1 AAATTATTA
47713369 AAATTATTTA
1 AAATTA-TTA
47713379 AAA
1 AAA
47713382 AAGTATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
7 7 0.22
8 4 0.12
9 15 0.47
10 6 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAATTATTA
Found at i:47713406 original size:17 final size:17
Alignment explanation
Indices: 47713386--47713425 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
47713376 TTAAAAAAGT
47713386 ATAAAATTTATTTTTTA
1 ATAAAATTTATTTTTTA
**
47713403 ATAATTTTTATTTTTTA
1 ATAAAATTTATTTTTTA
47713420 A-AAAAT
1 ATAAAAT
47713426 AATTAATTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATAAAATTTATTTTTTA
Found at i:47716383 original size:18 final size:17
Alignment explanation
Indices: 47716352--47716388 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
47716342 TTCAGAATAT
*
47716352 TATAAAATTATTAAAAA
1 TATAAAAATATTAAAAA
47716369 TATAAAAATATTTAAAAA
1 TATAAAAATA-TTAAAAA
47716387 TA
1 TA
47716389 CATAAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TATAAAAATATTAAAAA
Found at i:47716384 original size:10 final size:9
Alignment explanation
Indices: 47716347--47716388 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
47716337 CATGATTCAG
47716347 AATATTATAA
1 AATATTA-AA
47716357 AATTATTAAA
1 AA-TATTAAA
47716367 AATA-TAAA
1 AATATTAAA
47716375 AATATTTAAA
1 AATA-TTAAA
47716385 AATA
1 AATA
47716389 CATAAAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.28
9 2 0.07
10 14 0.48
11 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
AATATTAAA
Found at i:47716528 original size:31 final size:29
Alignment explanation
Indices: 47716487--47716552 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
47716477 AAGCTTTATA
* *
47716487 TTTTTGTAAATTATATAAATTTTTAAATATT
1 TTTTTATAAATT-TA-AAAGTTTTAAATATT
*
47716518 TTTTTATAAATTTAACAGTTTTAAATATT
1 TTTTTATAAATTTAAAAGTTTTAAATATT
47716547 TTTTTA
1 TTTTTA
47716553 CAAGTTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 19 0.59
30 2 0.06
31 11 0.34
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTTATAAATTTAAAAGTTTTAAATATT
Found at i:47716552 original size:21 final size:22
Alignment explanation
Indices: 47716528--47716575 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
47716518 TTTTTATAAA
47716528 TTTAAC-AGTTTTAAATATTTT
1 TTTAACAAGTTTTAAATATTTT
47716549 TTT-ACAAGTTTTAAATATTTT
1 TTTAACAAGTTTTAAATATTTT
*
47716570 TATAAC
1 TTTAAC
47716576 TTTTTACATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTAACAAGTTTTAAATATTTT
Found at i:47716885 original size:20 final size:20
Alignment explanation
Indices: 47716860--47716897 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47716850 AGTTGTATTG
* *
47716860 ATACAAGTCTACTTCTACCA
1 ATACAAGCCCACTTCTACCA
47716880 ATACAAGCCCACTTCTAC
1 ATACAAGCCCACTTCTAC
47716898 TCAAGATCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.34, G:0.05, T:0.26
Consensus pattern (20 bp):
ATACAAGCCCACTTCTACCA
Found at i:47718460 original size:46 final size:46
Alignment explanation
Indices: 47718393--47718568 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
47718383 TGTAACCCGC
* * *
47718393 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
47718439 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* *
47718489 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
47718532 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
47718569 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:47718514 original size:93 final size:93
Alignment explanation
Indices: 47718402--47718571 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
47718392 CCCATAAGCA
* *
47718402 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
47718467 GAGTTCGAATGCCTAGTTACATCTCACG
66 GAGTTCGAATGCCTAGTTACATCTCACG
*
47718495 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
47718560 GAGTTCGGATGC
66 GAGTTCGAATGC
47718572 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGAATGCCTAGTTACATCTCACG
Found at i:47725732 original size:12 final size:12
Alignment explanation
Indices: 47725715--47725742 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
47725705 GTCTCACTTG
47725715 CTTAAATCTTCC
1 CTTAAATCTTCC
47725727 CTTAAATCTTCC
1 CTTAAATCTTCC
47725739 CTTA
1 CTTA
47725743 GAAGTGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (12 bp):
CTTAAATCTTCC
Found at i:47730330 original size:60 final size:60
Alignment explanation
Indices: 47730263--47730401 Score: 176
Period size: 60 Copynumber: 2.3 Consensus size: 60
47730253 CCAACTGTGT
47730263 TGATATGGG-TAAGGCCCAATATATCTCGACT-TGTAATAGGGCTACGGCCCAGATTAATAC
1 TGATATGGGCTAAGGCCCAATATA-CTCGACTATGTAA-AGGGCTACGGCCCAGATTAATAC
* * * * * *
47730323 TGATATGGGCT-AGGCCCAGTATACTCTATTACTGTAAGGGGTTATGGCCCAGATTAATAC
1 TGATATGGGCTAAGGCCCAATATACTCGACTA-TGTAAAGGGCTACGGCCCAGATTAATAC
47730383 TGATATGGGCTAAGGCCCA
1 TGATATGGGCTAAGGCCCA
47730402 GTTAACACTG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 5 0.07
60 51 0.74
61 13 0.19
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (60 bp):
TGATATGGGCTAAGGCCCAATATACTCGACTATGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:47730399 original size:28 final size:28
Alignment explanation
Indices: 47730301--47730413 Score: 97
Period size: 28 Copynumber: 3.9 Consensus size: 28
47730291 ACTTGTAATA
*
47730301 GGGCTACGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
47730329 GGGCT-AGGCCCAGTATACTCTATTACTG-TAAG
1 GGGCTAAGGCCCAG---A-T-TAATACTGAT-AT
* *
47730361 GGGTTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
*
47730389 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
47730414 TTCTGAATAG
Statistics
Matches: 67, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
27 17 0.25
28 25 0.37
29 2 0.03
30 2 0.03
31 2 0.03
32 12 0.18
33 7 0.10
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:47734904 original size:65 final size:66
Alignment explanation
Indices: 47734823--47734954 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 66
47734813 TTCCTCACTC
*
47734823 AAGATTTTCAAAAGAATGGTGGTATAAATGCTTA-CAAATACATTCAAATAGTCATTTGAAAAAC
1 AAGATTTTCAAAAGAATGGTAGTATAAATGCTTAGCAAATACATTCAAATAGTCATTTGAAAAAC
47734887 T
66 T
47734888 AAGATTTTCAAAAGAATGGTAGTATAAATGCTTAGCAAATACATTCAAATAGTCATTTGAAAAAC
1 AAGATTTTCAAAAGAATGGTAGTATAAATGCTTAGCAAATACATTCAAATAGTCATTTGAAAAAC
47734953 T
66 T
47734954 A
1 A
47734955 GTATTTGAGA
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
65 33 0.51
66 32 0.49
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (66 bp):
AAGATTTTCAAAAGAATGGTAGTATAAATGCTTAGCAAATACATTCAAATAGTCATTTGAAAAAC
T
Found at i:47736117 original size:18 final size:18
Alignment explanation
Indices: 47736077--47736118 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
47736067 AAAATATAGT
*
47736077 AACTAATTTTGATTGATAT
1 AACT-ATTTTGATTGATAA
*
47736096 AACTATTTTGATTGTTAA
1 AACTATTTTGATTGATAA
47736114 AACTA
1 AACTA
47736119 GCTAACAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (18 bp):
AACTATTTTGATTGATAA
Found at i:47742411 original size:16 final size:18
Alignment explanation
Indices: 47742382--47742416 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
47742372 TGAATTCTAG
47742382 TAGCTATAAGAATT-AAA
1 TAGCTATAAGAATTCAAA
47742399 TAGCTAT-AGAATTCAAA
1 TAGCTATAAGAATTCAAA
47742416 T
1 T
47742417 CTAGAAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (18 bp):
TAGCTATAAGAATTCAAA
Found at i:47743610 original size:57 final size:57
Alignment explanation
Indices: 47743522--47743717 Score: 338
Period size: 57 Copynumber: 3.4 Consensus size: 57
47743512 CTATTAGGGC
* * * *
47743522 TTAGCCAGGACTGGTAACCCTAATTAAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
1 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
*
47743579 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGATTTCGTTATATAAAGGAT
1 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
47743636 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
1 TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
*
47743693 TTAGCTTGGACTAGTAATCCTAATT
1 TTAGCCTGGACTAGTAATCCTAATT
47743718 AAGAGTGTGT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 132 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (57 bp):
TTAGCCTGGACTAGTAATCCTAATTGAGCTCTTTTGAGCTTTCGTTATATAAAGGAT
Found at i:47746590 original size:32 final size:32
Alignment explanation
Indices: 47746554--47746618 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
47746544 GAAACCTGAG
* *
47746554 AACAATAAACGTCTACTAATCTGAAAACACAT
1 AACAACAAACGTCTACTAATCTAAAAACACAT
*
47746586 AACAACAAATGTCTACTAATCTAAAAACACAT
1 AACAACAAACGTCTACTAATCTAAAAACACAT
47746618 A
1 A
47746619 TAGAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.52, C:0.22, G:0.05, T:0.22
Consensus pattern (32 bp):
AACAACAAACGTCTACTAATCTAAAAACACAT
Found at i:47746842 original size:22 final size:22
Alignment explanation
Indices: 47746817--47746872 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
47746807 AGCCAACTAC
47746817 CATGGGTGTCACGACACCAAAG
1 CATGGGTGTCACGACACCAAAG
47746839 CATGGGTGTCACGACACCAAAG
1 CATGGGTGTCACGACACCAAAG
*
47746861 CGTGGGTGTCAC
1 CATGGGTGTCAC
47746873 AACATTGAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.16
Consensus pattern (22 bp):
CATGGGTGTCACGACACCAAAG
Found at i:47751875 original size:49 final size:47
Alignment explanation
Indices: 47751803--47752002 Score: 155
Period size: 49 Copynumber: 4.2 Consensus size: 47
47751793 TGTGTGTGTC
47751803 AGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGAGACATGGCATC-GCCTCAAGATATG-AAGCT
* ** * * *
47751852 AGTGTAAGACCTGTCT-AGGACATGGCATCGACTTGAGGTGTG--TC-
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGCCTCAAGATATGAAGCT
*
47751896 AGTGTAAGACCTGTCTGAGACATGGCATCAGCCTCGATGCATA-GAAG-T
1 AGTGTAAGACCTGTCTGAGACATGGCATC-GCCTC-AAG-ATATGAAGCT
* * * * *
47751944 CAGTGTAAGACCTGTCT-AGGACATAGCATAGCC-CTAGATGTGAGAGCC
1 -AGTGTAAGACCTGTCTGA-GACATGGCATCGCCTCAAGATATGA-AGCT
47751992 AGTGTAAGACC
1 AGTGTAAGACC
47752003 ATGTTTGGAA
Statistics
Matches: 119, Mismatches: 19, Indels: 28
0.72 0.11 0.17
Matches are distributed among these distances:
44 27 0.23
45 7 0.06
46 5 0.04
47 15 0.13
48 13 0.11
49 52 0.44
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGAGACATGGCATCGCCTCAAGATATGAAGCT
Found at i:47751918 original size:44 final size:45
Alignment explanation
Indices: 47751796--47751924 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 45
47751786 TGGGTGATGT
*
47751796 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAG
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGACTCAAG
* * * **
47751841 ATATGCAAGCTAGTGTAAGACCTGTCT-AGGACATGGCATC-GACTTGAG
1 GTGTG---TC-AGTGTAAGACCTGTCTGA-GACATGGCATCGGACTCAAG
47751889 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATC
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATC
47751925 AGCCTCGATG
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
44 27 0.39
45 5 0.07
48 10 0.14
49 27 0.39
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (45 bp):
GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGACTCAAG
Found at i:47751955 original size:93 final size:93
Alignment explanation
Indices: 47751796--47751972 Score: 279
Period size: 93 Copynumber: 1.9 Consensus size: 93
47751786 TGGGTGATGT
*
47751796 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGA
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCAGCCTCAAGATATGCAAGCTAGTGTAAGA
*
47751861 CCTGTCTAGGACATGGCATCGACTTGAG
66 CCTGTCTAGGACATAGCATCGACTTGAG
*
47751889 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCAGCCTCGATGCATA-G-AAG-TCAGTGTA
1 GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCAGCCTC-AAG-ATATGCAAGCT-AGTGTA
47751951 AGACCTGTCTAGGACATAGCAT
63 AGACCTGTCTAGGACATAGCAT
47751973 AGCCCTAGAT
Statistics
Matches: 78, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
92 1 0.01
93 71 0.91
94 3 0.04
95 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (93 bp):
GTGTGTCAGTGTAAGACCTGTCTGAGACATGGCATCAGCCTCAAGATATGCAAGCTAGTGTAAGA
CCTGTCTAGGACATAGCATCGACTTGAG
Found at i:47753770 original size:6 final size:6
Alignment explanation
Indices: 47753759--47753785 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
47753749 AAGATGTGAC
47753759 TGAGAA TGAGAA TGAGAA TGAGAA TGA
1 TGAGAA TGAGAA TGAGAA TGAGAA TGA
47753786 TATGAGATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19
Consensus pattern (6 bp):
TGAGAA
Found at i:47755134 original size:19 final size:20
Alignment explanation
Indices: 47755106--47755147 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
47755096 TGTTTAATTG
47755106 TGATTGAATTGTT-TATGAAT
1 TGATTGAATT-TTGTATGAAT
*
47755126 TGATT-AATTTTGTCTGAAT
1 TGATTGAATTTTGTATGAAT
47755145 TGA
1 TGA
47755148 ATATTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (20 bp):
TGATTGAATTTTGTATGAAT
Found at i:47760708 original size:30 final size:31
Alignment explanation
Indices: 47760659--47760731 Score: 114
Period size: 30 Copynumber: 2.4 Consensus size: 31
47760649 AGCTTACTAA
47760659 GTTTTATAGCT-TACTTTGTTTATTTTCCCGT
1 GTTTTATAG-TGTACTTTGTTTATTTTCCCGT
*
47760690 GTTTTATAGTGT-CTTTGTTTATTTTCTCGT
1 GTTTTATAGTGTACTTTGTTTATTTTCCCGT
47760720 GTTTTATAGTGT
1 GTTTTATAGTGT
47760732 TATGAAGCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 30 0.75
31 10 0.25
ACGTcount: A:0.12, C:0.11, G:0.16, T:0.60
Consensus pattern (31 bp):
GTTTTATAGTGTACTTTGTTTATTTTCCCGT
Found at i:47764060 original size:15 final size:14
Alignment explanation
Indices: 47764039--47764073 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
47764029 GGGATATAGT
47764039 AAAATATTATAAAA
1 AAAATATTATAAAA
47764053 ATAAATATTATAAAA
1 A-AAATATTATAAAA
47764068 AAAATA
1 AAAATA
47764074 CACATGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATATTATAAAA
Found at i:47767061 original size:37 final size:37
Alignment explanation
Indices: 47767011--47767089 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
47767001 TTATTACGAA
* *
47767011 GTCTTACCCGGACAGAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
47767048 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
47767085 GTCTT
1 GTCTT
47767090 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:47767277 original size:47 final size:47
Alignment explanation
Indices: 47767208--47767459 Score: 477
Period size: 47 Copynumber: 5.4 Consensus size: 47
47767198 CCCTTCGGGA
*
47767208 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47767255 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767302 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767349 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767396 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47767443 CTTATCACATATATACA
1 CTTATCACACATATACA
47767460 TTGTCTTGGC
Statistics
Matches: 203, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 203 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47772551 original size:35 final size:35
Alignment explanation
Indices: 47772505--47772574 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
47772495 TCACTGAAAT
47772505 GACAAATAATCTGAATGAGTACAAGATGAAGCTAA
1 GACAAATAATCTGAATGAGTACAAGATGAAGCTAA
47772540 GACAAATAATCTGAATGAGTACAAGATGAAGCTAA
1 GACAAATAATCTGAATGAGTACAAGATGAAGCTAA
47772575 CTCAAAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (35 bp):
GACAAATAATCTGAATGAGTACAAGATGAAGCTAA
Found at i:47777029 original size:3 final size:3
Alignment explanation
Indices: 47777021--47777062 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
47777011 ACACAAAGCA
*
47777021 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
47777063 TTGTGATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Done.