Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 147 of 373
Found at i:48777853 original size:27 final size:26
Alignment explanation
Indices: 48777763--48777863 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
48777753 CTCAGTTATT
* * * *
48777763 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAAAGCCACCAGA-AA
* *
48777790 AGATATTGTAGCAGAGCCACCAGAACA
1 AGATATTGTGGCAAAGCCACCAGAA-A
*
48777817 A-ATATTTGTGGCATAGCCACCAGAAA
1 AGATA-TTGTGGCAAAGCCACCAGAAA
*
48777843 GAGATAATGTGGCAAAGCCAC
1 -AGATATTGTGGCAAAGCCAC
48777864 TTAACAGAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
26 5 0.08
27 54 0.87
28 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
AGATATTGTGGCAAAGCCACCAGAAA
Found at i:48778570 original size:27 final size:27
Alignment explanation
Indices: 48778513--48778788 Score: 347
Period size: 27 Copynumber: 10.3 Consensus size: 27
48778503 GGGGCAAAAT
* * * * *
48778513 GGTAATTTTACCCCACA-AGGTATCTA
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48778539 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
48778566 AGTAATTCAACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48778593 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48778620 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48778647 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48778674 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
48778701 AATAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48778728 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
48778755 GATAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
48778782 GGTAATT
1 GGTAATT
48778789 TTATAAATCA
Statistics
Matches: 220, Mismatches: 29, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 14 0.06
27 206 0.94
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:48778800 original size:27 final size:27
Alignment explanation
Indices: 48778770--48779059 Score: 235
Period size: 27 Copynumber: 10.7 Consensus size: 27
48778760 TTCTACCCTA
*
48778770 CAAGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**** * **
48778797 CAAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
48778824 TAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
48778851 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * ** * *
48778878 CGAGAGTATTTCAGTAATTTCACGAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
48778905 C-AGGGATATTTTGGTAATTTTACAAA-
1 CAAGGG-TATTTTGGTAATTTTACAAAT
* * *
48778931 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
48778959 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
48778986 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
48779012 CAATGGGTATTTTAGTAATTTTACAAAC
1 CAA-GGGTATTTTGGTAATTTTACAAAT
*
48779040 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
48779060 GGTAAACTAA
Statistics
Matches: 215, Mismatches: 42, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 6 0.03
27 203 0.94
28 6 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:48779066 original size:27 final size:27
Alignment explanation
Indices: 48778891--48779059 Score: 248
Period size: 27 Copynumber: 6.3 Consensus size: 27
48778881 GAGTATTTCA
* * * *
48778891 GTAATTTCACGAATCAGGGATATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
48778918 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
48778945 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
48778972 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * *
48778999 GTAATTTTATAAACAATGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
48779026 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
48779053 GTAATTT
1 GTAATTT
48779060 GGTAAACTAA
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:48781821 original size:18 final size:18
Alignment explanation
Indices: 48781798--48781838 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
48781788 GTTTAAACTA
48781798 TTACTGCACTGGTTACTG
1 TTACTGCACTGGTTACTG
* *
48781816 TTACTGCACTGTTTATTG
1 TTACTGCACTGGTTACTG
48781834 TTACT
1 TTACT
48781839 ATAATAGGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (18 bp):
TTACTGCACTGGTTACTG
Found at i:48785630 original size:45 final size:45
Alignment explanation
Indices: 48785566--48785655 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
48785556 TTTATGGAAC
48785566 TAAGCATGCAAACAATAAAATTTCTTAACGAAATTTGTATACAAT
1 TAAGCATGCAAACAATAAAATTTCTTAACGAAATTTGTATACAAT
*
48785611 TAAGCATGCAAACGATAAAATTTCTTAACGAAATTTGTATACAAT
1 TAAGCATGCAAACAATAAAATTTCTTAACGAAATTTGTATACAAT
48785656 CATACTATTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (45 bp):
TAAGCATGCAAACAATAAAATTTCTTAACGAAATTTGTATACAAT
Found at i:48796139 original size:38 final size:37
Alignment explanation
Indices: 48796038--48796140 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 37
48796028 CACCTGCATC
**
48796038 AAGCCTGCTAGGCACTAAGCCTGAATAAAACTGGCAGT
1 AAGCCTGCTAGGCACTAAGCCTG-ATAAAACTGGCACA
* *
48796076 AAGCCTGCTAGGCACTAAGCTTGATAAATACTGGTACA
1 AAGCCTGCTAGGCACTAAGCCTGATAAA-ACTGGCACA
48796114 AAGCCTGCTAGGCACTAAGCCTGATAA
1 AAGCCTGCTAGGCACTAAGCCTGATAA
48796141 TCACCCAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 5 0.08
38 54 0.92
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (37 bp):
AAGCCTGCTAGGCACTAAGCCTGATAAAACTGGCACA
Found at i:48797296 original size:2 final size:2
Alignment explanation
Indices: 48797289--48797345 Score: 96
Period size: 2 Copynumber: 28.5 Consensus size: 2
48797279 ATTACCAACA
* *
48797289 AC AC AC AC AC AC AC GC AC AC AC AC AC AC AC AC AC AT AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
48797331 AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC A
48797346 TATATACGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.47, G:0.02, T:0.02
Consensus pattern (2 bp):
AC
Found at i:48800285 original size:31 final size:31
Alignment explanation
Indices: 48800245--48800354 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
48800235 CTTGACACAT
*
48800245 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
48800276 ACTAGGCCGAAGCCTTTTCACAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
48800307 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
48800338 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
48800355 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:48800433 original size:42 final size:42
Alignment explanation
Indices: 48800376--48800469 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
48800366 TATGGCCCTT
* *
48800376 AAGCCCATTTTAATATCACATGTAATGTCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
* *
48800418 AAGCCAATTTCAATATCACATGTAATTTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
48800460 AAGCCCATTT
1 AAGCCCATTT
48800470 GGGAGACTAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
Found at i:48800639 original size:24 final size:23
Alignment explanation
Indices: 48800589--48800660 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
48800579 ACTTTATCAT
**
48800589 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
48800614 ATAACTGGGGCAAAGCCCTTTCTA
1 ATAACTGGGGCAAAGCCCTTT-TA
*
48800638 ATAAACTAGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
48800661 CGGTAAACTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 4 0.10
24 12 0.29
25 26 0.62
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:48800644 original size:25 final size:23
Alignment explanation
Indices: 48800603--48800686 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 23
48800593 CTGGAGGCCT
*
48800603 AGCCTCTTTTAATAACTGGGGCAA
1 AGCC-CTTTTAATAACTAGGGCAA
48800627 AGCCCTTTCTAATAAACTAGGGCAA
1 AGCCCTTT-TAAT-AACTAGGGCAA
** *
48800652 AGCCCTTTTCGGTAAACTAGGGCAG
1 AGCCCTTTT-AAT-AACTAGGGCAA
48800677 AGCCCTTTTA
1 AGCCCTTTTA
48800687 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
23 4 0.08
24 9 0.17
25 39 0.75
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (23 bp):
AGCCCTTTTAATAACTAGGGCAA
Found at i:48801525 original size:27 final size:27
Alignment explanation
Indices: 48801495--48801559 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
48801485 GGGCATATTC
48801495 GTCATTTTACCATACAAGGG-TATTACA
1 GTCATTTTACCATACAAGGGCT-TTACA
* * * *
48801522 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACA
*
48801549 GTCTTTTTACC
1 GTCATTTTACC
48801560 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:48801683 original size:29 final size:30
Alignment explanation
Indices: 48801611--48801722 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 30
48801601 TGGTAAATCT
*
48801611 ACAAACCAAGGGTATTTC-AGTAATTTTGT-
1 ACAAATCAAGGGTATTTCTA-TAATTTTGTA
* *
48801640 --AAACCAATGGTATTTCTATAATTTT-TA
1 ACAAATCAAGGGTATTTCTATAATTTTGTA
48801667 A-AAAGTCAAGGGTATTTCTATAATTTTGTA
1 ACAAA-TCAAGGGTATTTCTATAATTTTGTA
* **
48801697 ACAAATTAAGGGTATTTGGATAATTT
1 ACAAATCAAGGGTATTTCTATAATTT
48801723 CACAAACTAG
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 1 0.01
27 22 0.31
28 4 0.06
29 20 0.28
30 21 0.30
31 3 0.04
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (30 bp):
ACAAATCAAGGGTATTTCTATAATTTTGTA
Found at i:48801710 original size:30 final size:29
Alignment explanation
Indices: 48801648--48801722 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 29
48801638 GTAAACCAAT
48801648 GGTATTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCTATAATTTTTAAAAAGTCAAG
*
48801677 GGTATTTCTATAATTTTGTAACAAA-TTAAG
1 GGTATTTCTATAATTTT-TAA-AAAGTCAAG
**
48801707 GGTATTTGGATAATTT
1 GGTATTTCTATAATTT
48801723 CACAAACTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 17 0.41
30 21 0.51
31 3 0.07
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (29 bp):
GGTATTTCTATAATTTTTAAAAAGTCAAG
Found at i:48801736 original size:27 final size:27
Alignment explanation
Indices: 48801697--48801802 Score: 160
Period size: 27 Copynumber: 3.9 Consensus size: 27
48801687 TAATTTTGTA
* * *
48801697 ACAAATTAAGGGTA-TTTGGATAATTTC
1 ACAAACTAGGGGTATTTTGG-TAATTTT
48801724 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATTTT
48801751 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATTTT
*
48801778 ATAAACTAGGGGTATTTTGGTAATT
1 ACAAACTAGGGGTATTTTGGTAATT
48801803 CTATCCTATA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
27 69 0.93
28 5 0.07
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.40
Consensus pattern (27 bp):
ACAAACTAGGGGTATTTTGGTAATTTT
Found at i:48801814 original size:27 final size:28
Alignment explanation
Indices: 48801706--48801821 Score: 152
Period size: 27 Copynumber: 4.3 Consensus size: 28
48801696 AACAAATTAA
*
48801706 GGGTA-TTTGGATAATTTCA-CAAACTAG
1 GGGTATTTTGG-TAATTTTATCAAACTAG
48801733 GGGTATTTTGGTAATTTTA-CAAACTAG
1 GGGTATTTTGGTAATTTTATCAAACTAG
48801760 GGGTATTTTGGTAATTTTAT-AAACTAG
1 GGGTATTTTGGTAATTTTATCAAACTAG
* **
48801787 GGGTATTTTGGTAATTCTATCCTA-TAG
1 GGGTATTTTGGTAATTTTATCAAACTAG
48801814 GGGTATTT
1 GGGTATTT
48801822 CAATAATTTC
Statistics
Matches: 82, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
27 76 0.93
28 6 0.07
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTTATCAAACTAG
Found at i:48801815 original size:54 final size:55
Alignment explanation
Indices: 48801697--48801835 Score: 160
Period size: 54 Copynumber: 2.6 Consensus size: 55
48801687 TAATTTTGTA
* * *
48801697 ACAAATTAAGGGTA-TTTGGATAATTTCACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGATAATTTCACAAACTAGGGGTATTTTGGTAATTCT
* *
48801751 ACAAACTAGGGGTATTTTGG-TAATTTTATAAACTAGGGGTATTTTGGTAATTCT
1 ACAAACTAGGGGTATTTTGGATAATTTCACAAACTAGGGGTATTTTGGTAATTCT
** **
48801805 ATCCTA-TAGGGGTA-TTTCAATAATTTCACAA
1 A-CAAACTAGGGGTATTTTGGATAATTTCACAA
48801836 TCGAGGGTAA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
53 3 0.04
54 61 0.86
55 7 0.10
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (55 bp):
ACAAACTAGGGGTATTTTGGATAATTTCACAAACTAGGGGTATTTTGGTAATTCT
Found at i:48801868 original size:27 final size:27
Alignment explanation
Indices: 48801834--48801925 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
48801824 ATAATTTCAC
48801834 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
48801861 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTTTGTA
* * * *
48801888 AATCGAGGGTAAAACAAAAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTA
48801915 AATCGAGGGTA
1 AATCGAGGGTA
48801926 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTGTA
Found at i:48801948 original size:54 final size:53
Alignment explanation
Indices: 48801825--48801950 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 53
48801815 GGTATTTCAA
* * * * *
48801825 TAATTTCACAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGG
1 TAATTTTACAATCGAGGGTAAAACAAAAATTCTATAAACTGAGGGTAAAATGG
***
48801878 TAATTTTGTA-AATCGAGGGTAAAACAAAAATTCTATAAA-TCGAGGGTACTTTGG
1 TAA-TTT-TACAATCGAGGGTAAAACAAAAATTCTATAAACT-GAGGGTAAAATGG
48801932 TAATTTTACAAGTCGAGGG
1 TAATTTTACAA-TCGAGGG
48801951 CATTTCAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 48 0.80
55 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (53 bp):
TAATTTTACAATCGAGGGTAAAACAAAAATTCTATAAACTGAGGGTAAAATGG
Found at i:48806556 original size:40 final size:40
Alignment explanation
Indices: 48806374--48806596 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
48806364 TCCTCGTTCA
* * * * *
48806374 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48806413 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48806453 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
48806493 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
48806533 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
48806573 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48806597 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48806605 original size:41 final size:41
Alignment explanation
Indices: 48806528--48806605 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
48806518 TTAGTATCTC
* * *
48806528 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
48806569 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
48806606 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:48815750 original size:11 final size:11
Alignment explanation
Indices: 48815724--48815783 Score: 81
Period size: 11 Copynumber: 5.7 Consensus size: 11
48815714 ATTTTGATAT
*
48815724 ACATGATTTG-
1 ACATGATATGC
48815734 ACATGATATGC
1 ACATGATATGC
48815745 ACATGATATGC
1 ACATGATATGC
48815756 ACATGATATG-
1 ACATGATATGC
*
48815766 -TATGATATGC
1 ACATGATATGC
48815776 ACATGATA
1 ACATGATA
48815784 AATTCATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
9 8 0.18
10 9 0.20
11 27 0.61
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:48815925 original size:25 final size:25
Alignment explanation
Indices: 48815831--48815920 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
48815821 GAGGAAGTGC
* *
48815831 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAATTTATCG
*
48815856 AAAAGGGTTTTGCCCCAATTTATCG
1 AAAAGGGCTTTGCCCCAATTTATCG
*
48815881 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAATTTATCG
*
48815906 GAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCC
48815921 TAGTTATTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAATTTATCG
Found at i:48816181 original size:31 final size:31
Alignment explanation
Indices: 48816144--48816223 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
48816134 TCATTTGCAG
* *
48816144 TAAAGGCTTCGGCCTAGTGATATGAATAATGA
1 TAAAGGCTTCGGCCCAGTGATAAGAATAAT-A
48816176 -AAAGGCTTCGGCCCAGTGATAAGAATAATA
1 TAAAGGCTTCGGCCCAGTGATAAGAATAATA
*
48816206 TAAAGGCTTCGACCCAGT
1 TAAAGGCTTCGGCCCAGT
48816224 ATATGCTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.02
31 43 0.98
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (31 bp):
TAAAGGCTTCGGCCCAGTGATAAGAATAATA
Found at i:48827449 original size:27 final size:27
Alignment explanation
Indices: 48827411--48827465 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
48827401 AACCCAAGAG
48827411 ATAGCCAAATTGGTAATTTTTTTTATC
1 ATAGCCAAATTGGTAATTTTTTTTATC
*
48827438 ATAGTCAAATTGGTAATTTTTTTTATC
1 ATAGCCAAATTGGTAATTTTTTTTATC
48827465 A
1 A
48827466 AGTTAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (27 bp):
ATAGCCAAATTGGTAATTTTTTTTATC
Found at i:48827821 original size:142 final size:137
Alignment explanation
Indices: 48827531--48827817 Score: 367
Period size: 142 Copynumber: 2.0 Consensus size: 137
48827521 AAATTCAAAT
* * * *
48827531 ATAAATTGTTTATAAACTAAATTTGTAATAGCCCAAAATTCAGTGAAATCGGAACAATGGTCTCG
1 ATAAATTATTTATAAACTAAATTTGTAACAACCCAAAATTCAGTGAAATCAGAACAATGGTCTCG
* * *
48827596 GGACCACAAATCCAAATCGAAAAATAAATTTTTTTATTTTATGGTCTGTATTATTATAGACATGT
66 GGACCACAAATCCAAACCAAAAAATAAATTTTTTTATTTTATGGTCCGTATTATTATAGACATGT
48827661 CATGTGAAAAA
131 CATGTG----A
* * *
48827672 TATAAATTATTTATAAACTAAATTTGTAACAACCCAAATTTCAGTGAAATCAGAATAGTGGTCTC
1 -ATAAATTATTTATAAACTAAATTTGTAACAACCCAAAATTCAGTGAAATCAGAACAATGGTCTC
*
48827737 GGGACCACAAATCCAAGCCAAAAAATAAAATTTATTTTATTTTATTTTATGGTCCGTATTATTAT
65 GGGACCACAAATCCAAACCAAAAAAT--AA---A-TTT-TTTTATTTTATGGTCCGTATTATTAT
48827802 AGACATGTCATGTGA
123 AGACATGTCATGTGA
48827817 A
1 A
48827818 AATTTGATAA
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
142 80 0.63
144 3 0.02
145 1 0.01
147 1 0.01
148 3 0.02
149 39 0.31
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (137 bp):
ATAAATTATTTATAAACTAAATTTGTAACAACCCAAAATTCAGTGAAATCAGAACAATGGTCTCG
GGACCACAAATCCAAACCAAAAAATAAATTTTTTTATTTTATGGTCCGTATTATTATAGACATGT
CATGTGA
Found at i:48831729 original size:11 final size:11
Alignment explanation
Indices: 48831713--48831739 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
48831703 TTTACGGACG
48831713 TCGAAACTTTT
1 TCGAAACTTTT
48831724 TCGAAACTTTT
1 TCGAAACTTTT
48831735 TCGAA
1 TCGAA
48831740 TGTCTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (11 bp):
TCGAAACTTTT
Found at i:48839002 original size:80 final size:80
Alignment explanation
Indices: 48838869--48839080 Score: 356
Period size: 80 Copynumber: 2.7 Consensus size: 80
48838859 TATTCGGATG
*
48838869 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
48838934 TTTGTGCGAGTTACT
66 TTTGCGCGAGTTACT
*
48838949 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
48839014 TTTGCGCGAGTTACT
66 TTTGCGCGAGTTACT
* *
48839029 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAA
48839081 ATTTCGAAGG
Statistics
Matches: 125, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
79 8 0.06
80 117 0.94
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGCGCGAGTTACT
Found at i:48839071 original size:40 final size:40
Alignment explanation
Indices: 48838869--48839057 Score: 333
Period size: 40 Copynumber: 4.7 Consensus size: 40
48838859 TATTCGGATG
*
48838869 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
48838909 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
48838949 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
48838989 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
48839029 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
48839058 AGCAAGTAGC
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:48844022 original size:7 final size:8
Alignment explanation
Indices: 48843997--48844022 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
48843987 TGAATTGGTG
48843997 AAAGCCAA
1 AAAGCCAA
48844005 AAAGCCAA
1 AAAGCCAA
48844013 AAAGCCAA
1 AAAGCCAA
48844021 AA
1 AA
48844023 CTTTGGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.23, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAGCCAA
Found at i:48845035 original size:27 final size:27
Alignment explanation
Indices: 48845004--48845055 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
48844994 CATCTGATAT
*
48845004 TGATTCT-GTATTGGGCTTAGGCCCACC
1 TGATTCTAGTAATGGGC-TAGGCCCACC
*
48845031 TGATTCTATTAATGGGCTAGGCCCA
1 TGATTCTAGTAATGGGCTAGGCCCA
48845056 ACTGTTACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (27 bp):
TGATTCTAGTAATGGGCTAGGCCCACC
Found at i:48846654 original size:93 final size:93
Alignment explanation
Indices: 48846542--48846713 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
48846532 ACCCATAAGT
* *
48846542 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
48846606 ACGAGCTCAGATGCCTAGTTATATCTCTC
65 ACGAGCTCAGATGCCTAGTTATATCTCTC
*
48846635 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
48846700 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
48846714 CAAATATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTATATCTCTC
Found at i:48846704 original size:46 final size:46
Alignment explanation
Indices: 48846534--48846709 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
48846524 TGTAACCCAC
* *
48846534 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * * *
48846580 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC--AGATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A-T
* **
48846625 -TATATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
48846673 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48846710 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 2 0.02
46 60 0.58
47 25 0.24
48 1 0.01
49 8 0.08
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48846728 original size:46 final size:45
Alignment explanation
Indices: 48846585--48846729 Score: 111
Period size: 46 Copynumber: 3.1 Consensus size: 45
48846575 CGCATCCATA
* * * *
48846585 AGTGAACTCAGACTCAACTCAACGAGCTCAGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ATATC-CT
* * *
48846634 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC---ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAATATCC-T
48846677 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AATATCCT
48846724 AGTGAA
1 AGTGAA
48846730 ATGTCACTTG
Statistics
Matches: 76, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 34 0.45
47 26 0.34
48 4 0.05
49 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCCT
Found at i:48848800 original size:40 final size:40
Alignment explanation
Indices: 48848695--48848941 Score: 322
Period size: 40 Copynumber: 6.2 Consensus size: 40
48848685 CGGATGATAA
* *
48848695 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
48848735 CCGGGCTAAG-CCCGAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48848774 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48848814 CCGGGCTATGTCCCAAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48848854 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
48848894 CCGAGCTAAGTCTCGAAGGCAGTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
48848934 CC-GGCTAA
1 CCGGGCTAA
48848942 ATTTCAAAGG
Statistics
Matches: 182, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
39 40 0.22
40 142 0.78
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48848911 original size:120 final size:119
Alignment explanation
Indices: 48848691--48848914 Score: 333
Period size: 119 Copynumber: 1.9 Consensus size: 119
48848681 TATTCGGATG
* *
48848691 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGACAT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGACAT
* * *
48848756 TTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
48848810 ATAACCGGGCTATGTCCCAAAGGTATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGAC
*
48848874 ATTTGTGCGAGTTACTATAACCGAGCTAAGTCTCGAAGGCA
64 ATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCA
48848915 GTTGAGCAAG
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
118 2 0.02
119 46 0.49
120 45 0.48
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGACAT
TTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:48856802 original size:39 final size:39
Alignment explanation
Indices: 48856742--48856952 Score: 243
Period size: 39 Copynumber: 5.6 Consensus size: 39
48856732 CGGATGATAA
* *
48856742 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-T
*
48856782 CCGGCCTAAG-CCCGAAGGCATTTGTGCGAGTTACT-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48856819 -CGGG-T-A-T-CCG-AGGC--TT-TG-GAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
48856849 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
48856888 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC--TAAT
48856929 -CGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48856953 AGCAAGTAGT
Statistics
Matches: 148, Mismatches: 7, Indels: 32
0.79 0.04 0.17
Matches are distributed among these distances:
28 8 0.05
29 2 0.01
30 3 0.02
31 4 0.03
32 5 0.03
33 4 0.03
34 2 0.01
35 4 0.03
36 7 0.05
37 1 0.01
38 3 0.02
39 62 0.42
40 39 0.26
41 2 0.01
42 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48856974 original size:79 final size:79
Alignment explanation
Indices: 48856837--48856985 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 79
48856827 CGAGGCTTTG
* * *
48856837 GAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTACATCCGGGCTAAGTCCC
1 GAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTACTACATCCGGGCTAAATCCC
48856902 GAAGGCATTTGTGC
66 GAAGGCATTTGTGC
* * * *
48856916 GAGTTACTATAATCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATCC-GGCTAAATTC
1 GAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTA-CTACATCCGGGCTAAATCC
48856980 CGAAGG
65 CGAAGG
48856986 TACTTGGTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 56 0.90
80 6 0.10
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
GAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTACTACATCCGGGCTAAATCCC
GAAGGCATTTGTGC
Found at i:48856985 original size:39 final size:38
Alignment explanation
Indices: 48856841--48856985 Score: 173
Period size: 39 Copynumber: 3.7 Consensus size: 38
48856831 GCTTTGGAGT
*
48856841 TACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TACTATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAG
*
48856880 TACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TACTATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAG
* * *
48856919 TTACTATAATCGGGCTAAGTCCCGAAGGCATTTGAGCAAG
1 -TACTAT-ATCCGGCTAAGTCCCGAAGGCATTTGTGCGAG
* * *
48856959 TAGTTATATCCGGCTAAATTCCGAAGG
1 TA-CTATATCCGGCTAAGTCCCGAAGG
48856986 TACTTGGTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 56 0.60
40 34 0.37
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (38 bp):
TACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAG
Found at i:48876490 original size:46 final size:46
Alignment explanation
Indices: 48876439--48876567 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
48876429 TATTTGGGCA
48876439 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
48876485 TCCGAACTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
48876531 -CCGGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48876568 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:48879876 original size:51 final size:50
Alignment explanation
Indices: 48879810--48880097 Score: 274
Period size: 50 Copynumber: 5.7 Consensus size: 50
48879800 TGAGGTCGCA
* * *
48879810 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-AAACTGTGGTCACG
* ** *** *
48879861 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAACTGTGGTCACG
* * * * *
48879911 TGTGTAGTACTAAGTGCAGGCTGCCATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-AAACTGTGGTCACG
* * * ** *** *
48879962 TGTGTCGTAGTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAACTGTGGTCACG
* * *
48880012 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG--ACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAACTG-TGGTCACG
* *
48880061 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
48880098 TAGCTTCGGC
Statistics
Matches: 186, Mismatches: 48, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
48 2 0.01
49 38 0.20
50 79 0.42
51 67 0.36
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAAACTGTGGTCACG
Found at i:48879976 original size:101 final size:101
Alignment explanation
Indices: 48879799--48880086 Score: 411
Period size: 101 Copynumber: 2.9 Consensus size: 101
48879789 ATGATCTATT
* * *
48879799 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGT
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAACTGTGATCACGTGT
48879864 GTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
66 GTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
* *
48879900 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTGCCATGCGTACCTGAAAACTGTGATCACGTGT
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAACTGTGATCACGTGT
* *
48879965 GTCGTAGTAAGTGCAGGCTACTACGTGTATTAGATG
66 GTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
* * * * * * *
48880001 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTTGGTCGCATG
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAACTG-TGATCACGTG
*
48880063 TGTAGTACTAAGTACAGGCTACTA
65 TGTAGTACTAAGTGCAGGCTACTA
48880087 TGCGTACCAG
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
98 5 0.03
99 28 0.17
100 1 0.01
101 133 0.80
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (101 bp):
GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAACTGTGATCACGTGT
GTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:48881491 original size:50 final size:49
Alignment explanation
Indices: 48881367--48881548 Score: 197
Period size: 50 Copynumber: 3.7 Consensus size: 49
48881357 AGCTATCTGG
* * * **
48881367 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAA
*
48881416 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAA
* ***
48881466 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAA
* *
48881517 TACGCATAGTAGCCTGCACTTAGTACTACACA
1 TACACGTAGTAGCCTGCACTTAGTACTACACA
48881549 TGCGACCTCA
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 34 0.30
50 41 0.36
51 36 0.32
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAA
Found at i:48881548 original size:101 final size:99
Alignment explanation
Indices: 48881367--48881559 Score: 271
Period size: 101 Copynumber: 1.9 Consensus size: 99
48881357 AGCTATCTGG
* * *
48881367 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTG
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTG
*
48881432 CACTTAGTACTACACACGTGACCTCACCATCTAA
66 CACTTAGTACTACACACGCGACCTCACCATCTAA
* * * *
48881466 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGC
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGC
*
48881530 CTGCACTTAGTACTACACATGCGACCTCAC
63 CTGCACTTAGTACTACACACGCGACCTCAC
48881560 AATAGATCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 35 0.43
101 43 0.52
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (99 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTG
CACTTAGTACTACACACGCGACCTCACCATCTAA
Found at i:48884370 original size:15 final size:15
Alignment explanation
Indices: 48884328--48884371 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
48884318 CATAGTATCG
*
48884328 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
48884343 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTC
48884358 TATCTTGGATTTCT
1 TATCTTGGATTTCT
48884372 TTATTCTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:48886865 original size:46 final size:46
Alignment explanation
Indices: 48886807--48886896 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
48886797 TATTTGGGCA
48886807 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACG
* *
48886853 TCCGGACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA
48886897 TGCCCGAGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACG
Found at i:48886918 original size:46 final size:46
Alignment explanation
Indices: 48886808--48886918 Score: 152
Period size: 46 Copynumber: 2.4 Consensus size: 46
48886798 ATTTGGGCAT
* *
48886808 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
* *
48886854 CCG-GACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAG-CTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
* *
48886900 CCGAGCTCATTGAATTGAG
1 CCGAGCTCGTTGAGTTGAG
48886919 CCTTGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 56 0.98
47 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
Found at i:48908010 original size:27 final size:26
Alignment explanation
Indices: 48907978--48908072 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
48907968 CTACGCTACA
48907978 ATTATCTGATCTGGTGGCTCTGTCAC
1 ATTATCTGATCTGGTGGCTCTGTCAC
* *
48908004 ATATATCTGTTCTGGTGGCTCTGCCAC
1 AT-TATCTGATCTGGTGGCTCTGTCAC
* *
48908031 GATTATCTGTATCTGGTGACTTTGTCAC
1 -ATTATCTG-ATCTGGTGGCTCTGTCAC
* *
48908059 ATTATTTGTTCTGG
1 ATTATCTGATCTGG
48908073 GAGCCATGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.12
27 35 0.60
28 16 0.28
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (26 bp):
ATTATCTGATCTGGTGGCTCTGTCAC
Found at i:48908069 original size:54 final size:54
Alignment explanation
Indices: 48907961--48908072 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
48907951 AGGAAGCATC
* *
48907961 CTGGTGGCTACGCTACAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGTCACATATATCTGTT
* * *
48908015 CTGGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATTTGTT
1 CTGGTGGCTAC-GCCACAATTATCTG-ATCTGGTGACTCTGTCACATATATCTGTT
48908069 CTGG
1 CTGG
48908073 GAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 32 0.63
55 18 0.35
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGTCACATATATCTGTT
Found at i:48913900 original size:14 final size:14
Alignment explanation
Indices: 48913881--48913908 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
48913871 CATTCCGAAG
48913881 TATATATATACATA
1 TATATATATACATA
48913895 TATATATATACATA
1 TATATATATACATA
48913909 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATACATA
Found at i:48914441 original size:27 final size:28
Alignment explanation
Indices: 48914357--48914454 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
48914347 CATGAGATTG
* * * *
48914357 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
48914386 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
48914414 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
48914441 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
48914455 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:48914465 original size:27 final size:27
Alignment explanation
Indices: 48914385--48914467 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
48914375 TAAATTGTAC
* *
48914385 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
48914413 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
48914440 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
48914467 A
1 A
48914468 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:48920339 original size:37 final size:37
Alignment explanation
Indices: 48920289--48920367 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
48920279 TTATTACGAA
* * *
48920289 GTCTTACCCGGACATAA-TCTCCAGACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
48920326 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
48920363 GTCTT
1 GTCTT
48920368 TAGAGCCCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:48920564 original size:47 final size:47
Alignment explanation
Indices: 48920486--48920692 Score: 306
Period size: 47 Copynumber: 4.4 Consensus size: 47
48920476 CCCTTCGGGA
* * * * * * *
48920486 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48920533 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48920580 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48920627 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48920674 CTTATCACATATATACACT
1 CTTATCACATATATACACT
48920693 GTCTTGGCTG
Statistics
Matches: 144, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 144 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48923208 original size:27 final size:26
Alignment explanation
Indices: 48923178--48923249 Score: 78
Period size: 26 Copynumber: 2.7 Consensus size: 26
48923168 AGAATAGTGT
48923178 AATTACTTGA-ATACCCCTATGTGTG-AA
1 AATTAC-TGATATACCCCTA-G-GTGCAA
48923205 AATTACTGATATACCCCTAGGTGCAA
1 AATTACTGATATACCCCTAGGTGCAA
*
48923231 AATTAC-CATTATACCCCTA
1 AATTACTGA-TATACCCCTA
48923250 AGGTTACTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
25 4 0.10
26 22 0.54
27 15 0.37
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.31
Consensus pattern (26 bp):
AATTACTGATATACCCCTAGGTGCAA
Found at i:48923397 original size:27 final size:26
Alignment explanation
Indices: 48923367--48923466 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 26
48923357 GGTGGCTACA
*
48923367 CCACAATTATTTGATCTGGTGGCTCTG
1 CCAC-ATTATCTGATCTGGTGGCTCTG
*
48923394 CCACATATATCTGTTCTGGTGGCTCTG
1 CCACAT-TATCTGATCTGGTGGCTCTG
* *
48923421 CCAGGATTATCTGTATCTGGTGACTCTG
1 CCA-CATTATCTG-ATCTGGTGGCTCTG
* *
48923449 TCACATTATCTGTTCTGG
1 CCACATTATCTGATCTGG
48923467 CAGCCATGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.11
27 39 0.63
28 16 0.26
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CCACATTATCTGATCTGGTGGCTCTG
Found at i:48925217 original size:41 final size:41
Alignment explanation
Indices: 48925179--48925333 Score: 179
Period size: 41 Copynumber: 3.8 Consensus size: 41
48925169 TCAAATATAT
*
48925179 TCATTTTAAACCTTTTCATTTGATATTCTTTTT-GAATATTG
1 TCATTTTCAACCTTTTCATTTGATA-TCTTTTTCGAATATTG
* * * **
48925220 ACATTTTCAACCTTTTCATTTGATATCTTTTTGGGATATCA
1 TCATTTTCAACCTTTTCATTTGATATCTTTTTCGAATATTG
* *
48925261 T-TTTTTCAACCTTTTCATTTGATATCTTTTTCTAATATTG
1 TCATTTTCAACCTTTTCATTTGATATCTTTTTCGAATATTG
* * *
48925301 TCCTTTTCAACATTTTCATTTGTTATCCTTTTT
1 TCATTTTCAACCTTTTCATTTGATAT-CTTTTT
48925334 GGATAACTTC
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
40 41 0.43
41 49 0.51
42 6 0.06
ACGTcount: A:0.21, C:0.16, G:0.06, T:0.56
Consensus pattern (41 bp):
TCATTTTCAACCTTTTCATTTGATATCTTTTTCGAATATTG
Found at i:48925277 original size:81 final size:82
Alignment explanation
Indices: 48925182--48925335 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 82
48925172 AATATATTCA
*
48925182 TTTTAAACCTTTTCATTTGATATTCTTTTT-GAATATTGACATTTTCAACCTTTTCATTTGATAT
1 TTTTAAACCTTTTCATTTGATA-TCTTTTTCGAATATTGACATTTTCAACATTTTCATTTGATAT
48925246 -CTTTTTGGGATATCATT
65 CCTTTTTGGGATATCATT
* * * * *
48925263 TTTTCAACCTTTTCATTTGATATCTTTTTCTAATATTGTCCTTTTCAACATTTTCATTTGTTATC
1 TTTTAAACCTTTTCATTTGATATCTTTTTCGAATATTGACATTTTCAACATTTTCATTTGATATC
48925328 CTTTTTGG
66 CTTTTTGG
48925336 ATAACTTCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 7 0.11
81 50 0.77
82 8 0.12
ACGTcount: A:0.21, C:0.16, G:0.08, T:0.56
Consensus pattern (82 bp):
TTTTAAACCTTTTCATTTGATATCTTTTTCGAATATTGACATTTTCAACATTTTCATTTGATATC
CTTTTTGGGATATCATT
Found at i:48925346 original size:41 final size:40
Alignment explanation
Indices: 48925182--48925355 Score: 142
Period size: 41 Copynumber: 4.3 Consensus size: 40
48925172 AATATATTCA
* * * *
48925182 TTTTAAACCTTTTCATTTGATATTCTTTTTGAAT-A-TTGACA
1 TTTTCAACATTTTCATTTGATA-TCTTTTTGGATAACTT--CC
* *
48925223 TTTTCAACCTTTTCATTTGATATCTTTTTGGGATATCATT--
1 TTTTCAACATTTTCATTTGATATCTTTTT-GGATAAC-TTCC
* ** *
48925263 TTTTCAACCTTTTCATTTGATATCTTTTTCTA-ATATTGTCC
1 TTTTCAACATTTTCATTTGATATCTTTTTGGATA-ACT-TCC
*
48925304 TTTTCAACATTTTCATTTGTTATCCTTTTTGGATAACTTCC
1 TTTTCAACATTTTCATTTGATAT-CTTTTTGGATAACTTCC
48925345 TTTTCAACATT
1 TTTTCAACATT
48925356 GATATGAACT
Statistics
Matches: 111, Mismatches: 12, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 36 0.32
41 59 0.53
42 9 0.08
43 1 0.01
44 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.55
Consensus pattern (40 bp):
TTTTCAACATTTTCATTTGATATCTTTTTGGATAACTTCC
Found at i:48925534 original size:41 final size:41
Alignment explanation
Indices: 48925477--48925557 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
48925467 AAACAAGAAA
* *
48925477 AGGTTTAAATGTATAAGATGTAAAGATAGGTTTCATTTTCT
1 AGGTTTAAACGTATAAGATGTAAAGATAGGTTTCAGTTTCT
*
48925518 AGGTTTAAGCGTATAAGATGTAAAGATAGGTTTCAGTTTC
1 AGGTTTAAACGTATAAGATGTAAAGATAGGTTTCAGTTTC
48925558 AGTTTCAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.38
Consensus pattern (41 bp):
AGGTTTAAACGTATAAGATGTAAAGATAGGTTTCAGTTTCT
Found at i:48927872 original size:22 final size:22
Alignment explanation
Indices: 48927844--48927913 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
48927834 TACCGATATA
48927844 TCAGCTCGTAAGAGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTGT
* *
48927866 TCAGCTCG-ATATAGCTTACCGTT
1 TCAGCTCGTA-AGAGCTTACTG-T
* *
48927889 TCAGCTCATTAGAGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTGT
48927911 TCA
1 TCA
48927914 TCAACTTAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
21 1 0.03
22 21 0.54
23 17 0.44
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (22 bp):
TCAGCTCGTAAGAGCTTACTGT
Found at i:48927903 original size:45 final size:48
Alignment explanation
Indices: 48927822--48927913 Score: 129
Period size: 45 Copynumber: 2.0 Consensus size: 48
48927812 CTCACCACAA
*
48927822 CTCGTATGAGCTTACCGATATATCAGCTCGTAAGAGCTTACTGTTCAG
1 CTCGTATGAGCTTACCGATATATCAGCTCATAAGAGCTTACTGTTCAG
*
48927870 CTCGATAT-AGCTTACCG-T-T-TCAGCTCATTAGAGCTTACTGTTCA
1 CTCG-TATGAGCTTACCGATATATCAGCTCATAAGAGCTTACTGTTCA
48927914 TCAACTTAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
45 23 0.56
46 1 0.02
47 1 0.02
48 13 0.32
49 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (48 bp):
CTCGTATGAGCTTACCGATATATCAGCTCATAAGAGCTTACTGTTCAG
Found at i:48927904 original size:23 final size:23
Alignment explanation
Indices: 48927829--48927907 Score: 72
Period size: 23 Copynumber: 3.3 Consensus size: 23
48927819 CAACTCGTAT
* *
48927829 GAGCTTACCGATATATCAGCTCGTAA
1 GAGCTTACCG-T-T-TCAGCTCATTA
*
48927855 GAGCTTACTG-TTCAGCTCGA-TA
1 GAGCTTACCGTTTCAGCTC-ATTA
*
48927877 TAGCTTACCGTTTCAGCTCATTA
1 GAGCTTACCGTTTCAGCTCATTA
48927900 GAGCTTAC
1 GAGCTTAC
48927908 TGTTCATCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
22 17 0.39
23 18 0.41
26 9 0.20
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCATTA
Found at i:48927945 original size:20 final size:20
Alignment explanation
Indices: 48927920--48927960 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
48927910 TTCATCAACT
* *
48927920 TAGGAGGAGCTTATCGATCA
1 TAGGAGGAGATTACCGATCA
48927940 TAGGAGGAGATTACCGATCA
1 TAGGAGGAGATTACCGATCA
48927960 T
1 T
48927961 GGCTCGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (20 bp):
TAGGAGGAGATTACCGATCA
Found at i:48931865 original size:21 final size:20
Alignment explanation
Indices: 48931828--48931867 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
48931818 CTCATAAAAT
**
48931828 AGGGCACACGCTTGTGTGGG
1 AGGGCACACGCCCGTGTGGG
48931848 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
48931868 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.17, C:0.25, G:0.42, T:0.15
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGG
Found at i:48933252 original size:46 final size:46
Alignment explanation
Indices: 48933068--48933337 Score: 178
Period size: 49 Copynumber: 5.7 Consensus size: 46
48933058 TCCATCAAGT
* * * **
48933068 CGATGCCATGTCCCAGACATGGTCTTACTCTAACTATCAAAATTG-AGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC-ATCTTGTA-GC
* ** *
48933117 CGACTTCATGTCTTAGACATGGTCTTACACTAGCTCTCA-CATATACGT-GT
1 CGA-TGCATGTCCCAGACAT-GTCTTACACTAGCTCTCATC-T-T--GTAGC
* *
48933167 CGATGTCATGTCCCA-AGCATGGTCTTACACT-G-ACACATCTTGTAGC
1 CGATG-CATGTCCCAGA-CAT-GTCTTACACTAGCTCTCATCTTGTAGC
* *
48933213 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTT-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGTA-GC
* ** *
48933259 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AAGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTTGTAGC
*
48933306 CGATACATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
48933338 ACACAAATAA
Statistics
Matches: 178, Mismatches: 26, Indels: 38
0.74 0.11 0.16
Matches are distributed among these distances:
44 10 0.06
45 28 0.16
46 34 0.19
47 21 0.12
48 23 0.13
49 35 0.20
50 26 0.15
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGTAGC
Found at i:48933333 original size:93 final size:95
Alignment explanation
Indices: 48933068--48933337 Score: 282
Period size: 93 Copynumber: 2.8 Consensus size: 95
48933058 TCCATCAAGT
* * * * * * **
48933068 CGATGCCATGTCCCAGACATGGTCTTACTCTAACTATCAAAATTGAGGCCGACTTCATGTCTTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAA--GTGGCCGA-TACATGTCCCAG
* *
48933133 ACATGGTCTTACACTAGCTCTCACATATACGTGT
63 ACAT-GTCTTACACTAGCTCTCACATATACATGC
* * * * *
48933167 CGATGTCATGTCCCA-AGCATGGTCTTACACTGACACATC-T-TGTAGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGA-CATGGTCTTACACTGACTC-TCATAAGTGGCCGATACATGTCCCAGA
*
48933229 CATGTCTTACACTAGCTTTCATC-T-TA-ATGC
64 CATGTCTTACACTAGCTCTCA-CATATACATGC
*
48933259 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGTGGCCGATACATGTCCCAGACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAGTGGCCGATACATGTCCCAGACA
48933324 TGTCTTACACTAGC
66 TGTCTTACACTAGC
48933338 ACACAAATAA
Statistics
Matches: 144, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
91 2 0.01
92 34 0.24
93 38 0.26
94 18 0.12
95 14 0.10
96 6 0.04
98 1 0.01
99 29 0.20
100 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAGTGGCCGATACATGTCCCAGACA
TGTCTTACACTAGCTCTCACATATACATGC
Found at i:48941706 original size:39 final size:40
Alignment explanation
Indices: 48941549--48941718 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
48941539 GGACTAAGAT
* * * *
48941549 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
*
48941589 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
*
48941629 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
* * * * *
48941669 CCGAAGGCATT-GTGTGAGTTACTAAAACCAGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
48941708 CCGAAGGCATT
1 CCGAAGGCATT
48941719 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.28
40 86 0.72
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
Found at i:48960842 original size:50 final size:51
Alignment explanation
Indices: 48960765--48960893 Score: 215
Period size: 50 Copynumber: 2.5 Consensus size: 51
48960755 GACCATGGCA
48960765 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
48960816 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * * *
48960866 ACAAGTGAAAAGTGGTAGCATCTGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
48960894 CTGATTAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 50 0.68
51 23 0.32
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:48960907 original size:31 final size:30
Alignment explanation
Indices: 48960869--48960955 Score: 120
Period size: 31 Copynumber: 2.8 Consensus size: 30
48960859 ACAAATGACA
* *
48960869 AGTGAAAAGTGGTAGCATCTGCTACCTGATT
1 AGTGAAAAGTGGTAGC-TCGGCTACCTGATC
48960900 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CGGCTACCTGATC
*
48960931 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGC-TCGGCTAC
48960956 AAGTGACAAG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 1 0.02
31 49 0.96
32 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (30 bp):
AGTGAAAAGTGGTAGCTCGGCTACCTGATC
Found at i:48961127 original size:12 final size:12
Alignment explanation
Indices: 48961110--48961135 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48961100 TGTGATATGT
48961110 GATTACGTGTAA
1 GATTACGTGTAA
48961122 GATTACGTGTAA
1 GATTACGTGTAA
48961134 GA
1 GA
48961136 CCATAGCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATTACGTGTAA
Found at i:48961191 original size:42 final size:43
Alignment explanation
Indices: 48961128--48961242 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
48961118 GTAAGATTAC
* *
48961128 GTGTAAGACCATAGCTAGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
48961170 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* * **
48961212 GTGTAAGACCAAAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
48961243 GAAAACAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:48963535 original size:39 final size:39
Alignment explanation
Indices: 48963507--48963633 Score: 175
Period size: 39 Copynumber: 3.3 Consensus size: 39
48963497 GTGGGACTTT
* * *
48963507 AGCCTGGACATATTTCCAGCACGTAGCCTGCGGACCTTA
1 AGCCTGGATATAATTCCAGCACATAGCCTGCGGACCTTA
*
48963546 AGTCC-GGTTATAATTCCAGCACATAGCCTGCGGACCTTA
1 AG-CCTGGATATAATTCCAGCACATAGCCTGCGGACCTTA
* *
48963585 AGTCTGGATATAATTCCAGCACATAGCCTGCGGACCCTA
1 AGCCTGGATATAATTCCAGCACATAGCCTGCGGACCTTA
*
48963624 AGTCTGGATA
1 AGCCTGGATA
48963634 AACATCACTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 76 0.96
40 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
AGCCTGGATATAATTCCAGCACATAGCCTGCGGACCTTA
Found at i:48963558 original size:78 final size:77
Alignment explanation
Indices: 48963472--48963627 Score: 181
Period size: 78 Copynumber: 2.0 Consensus size: 77
48963462 GAATTTAAAC
* * * * *
48963472 CCGGTATAATACCAACTCGA-AGCCTGTGGGA-CTTTAGCCTGGACATATTTCCAGCACGTAGCC
1 CCGGTATAATACCAACAC-ATAGCCTG-CGGACCTTAAGCCTGGACATAATTCCAGCACATAGCC
*
48963535 TGCGGACCTTAAGT
64 TGCGGACCCTAAGT
* * * *
48963549 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGTCTGGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACCAACACATAGCCTGCGGACCTTAAGCCTGGACATAATTCCAGCACATAGCCT
48963614 GCGGACCCTAAGT
65 GCGGACCCTAAGT
48963627 C
1 C
48963628 TGGATAAACA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
77 8 0.12
78 58 0.88
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (77 bp):
CCGGTATAATACCAACACATAGCCTGCGGACCTTAAGCCTGGACATAATTCCAGCACATAGCCTG
CGGACCCTAAGT
Found at i:48970582 original size:18 final size:18
Alignment explanation
Indices: 48970555--48970589 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
48970545 CATGCTAATT
48970555 TTTTAAAATTTTTAAATA
1 TTTTAAAATTTTTAAATA
*
48970573 TTTTATAATTTTTAAAT
1 TTTTAAAATTTTTAAAT
48970590 TATTCATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTAAAATTTTTAAATA
Found at i:48977461 original size:21 final size:21
Alignment explanation
Indices: 48977448--48977507 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
48977438 CACACGAGCG
48977448 TGTTGCCCTTCCACACGGACA
1 TGTTGCCCTTCCACACGGACA
48977469 TGTTGCCCTTCCACACGGACA
1 TGTTGCCCTTCCACACGGACA
*
48977490 TGTTGCCTTTCCACACGG
1 TGTTGCCCTTCCACACGG
48977508 GCGTGTGCCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.17, C:0.37, G:0.20, T:0.27
Consensus pattern (21 bp):
TGTTGCCCTTCCACACGGACA
Found at i:48983430 original size:30 final size:30
Alignment explanation
Indices: 48983396--48983452 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
48983386 TCAAATTTCG
*
48983396 AGCCTAGGGGTAAAATGATCATTTTGCGAA
1 AGCCTAGGGGCAAAATGATCATTTTGCGAA
*
48983426 AGCCTAGGGGCAAAATGGTCATTTTGC
1 AGCCTAGGGGCAAAATGATCATTTTGC
48983453 CCAATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (30 bp):
AGCCTAGGGGCAAAATGATCATTTTGCGAA
Found at i:48987064 original size:42 final size:42
Alignment explanation
Indices: 48987017--48987134 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
48987007 TGTGATATCG
* *
48987017 TGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTACA
* * * *
48987059 TGTAAGACCCTGTCTGGGACAGTGGCATCAATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-GTATTTGATTACA
* ** *
48987102 TGTAAGACCACGTCTGGGATGTTGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAT
48987135 ATGCTTTCCG
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTACA
Found at i:48992357 original size:91 final size:92
Alignment explanation
Indices: 48992180--48992434 Score: 288
Period size: 90 Copynumber: 2.8 Consensus size: 92
48992170 TTAAGGATGT
* * * *
48992180 AAAAAGTCCTCGAACTTTTTTAAAAAAAGCAATTAAGCCCCTA-CTCTTTTTTTTGCATTCAATT
1 AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCCTATTTCTTTTTTTTGCACTCAATT
* * *
48992244 GGATACTTGAACTTTCAAAATGCAT-C
66 GGGTACTTGAACTTCCAAAATGCATAA
* * *
48992270 AAAAAGGCCTCAAACTTTTTTAAAAAAAGTAACTAAGCCCCTATTTCTTTTTTTTTCACTCAATT
1 AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCCTATTTCTTTTTTTTGCACTCAATT
*
48992335 GGGTACTTGAA-TTACCAGAATGCATAA
66 GGGTACTTGAACTT-CCAAAATGCATAA
* * * *
48992362 AAAAAGGTCTTCAAACTTTTTCATAAAAAACCAATTAAG-CCC--TTGCTATTTTTATTGCACTC
1 AAAAAGG-CCTCAAACTTTTTTA-AAAAAAGCAATTAAGCCCCTATTTCT-TTTTT-TTGCACTC
48992424 AATTGGGTACT
62 AATTGGGTACT
48992435 AAAATTGTCA
Statistics
Matches: 140, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
90 41 0.29
91 41 0.29
92 12 0.09
93 34 0.24
94 12 0.09
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (92 bp):
AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCCTATTTCTTTTTTTTGCACTCAATT
GGGTACTTGAACTTCCAAAATGCATAA
Found at i:48992427 original size:93 final size:88
Alignment explanation
Indices: 48992180--48992434 Score: 260
Period size: 91 Copynumber: 2.8 Consensus size: 88
48992170 TTAAGGATGT
* * * *
48992180 AAAAAGTCCTCGAACTTTTTTAAAAAAAGCAATTAAGCCCCTACTCTTTTTTTTGCATTCAATTG
1 AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCTTA--CTTTTTTTTGCACTCAATTG
* * *
48992245 GATACTTGAACTTTCAAAATGCATC
64 GGTACTTGAACTTCCAAAATGCATA
* * * *
48992270 AAAAAGGCCTCAAACTTTTTTAAAAAAAGTAACTAAGCCCCTATTTCTTTTTTTTTCACTCAATT
1 AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAG-CCC--TTACTTTTTTTTGCACTCAATT
*
48992335 GGGTACTTGAA-TTACCAGAATGCATAA
63 GGGTACTTGAACTT-CCAAAATGCAT-A
* * * *
48992362 AAAAAGGTCTTCAAACTTTTTCATAAAAAACCAATTAAGCCCTTGCTATTTTTATTGCACTCAAT
1 AAAAAGG-CCTCAAACTTTTTTA-AAAAAAGCAATTAAGCCCTTACT-TTTTT-TTGCACTCAAT
48992427 TGGGTACT
62 TGGGTACT
48992435 AAAATTGTCA
Statistics
Matches: 137, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
90 35 0.26
91 43 0.31
92 12 0.09
93 35 0.26
94 12 0.09
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (88 bp):
AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCTTACTTTTTTTTGCACTCAATTGGG
TACTTGAACTTCCAAAATGCATA
Found at i:48992458 original size:93 final size:88
Alignment explanation
Indices: 48992180--48992458 Score: 254
Period size: 93 Copynumber: 3.0 Consensus size: 88
48992170 TTAAGGATGT
* * * *
48992180 AAAAAGTCCTCGAACTTTTTTAAAAAAAGCAATTAAGCCCCTACTCTTTTTTTTGCATTCAATTG
1 AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCTTA--CTTTTTTTTGCACTCAATTG
* * *
48992245 GATACTTGAACTTTCAAAATGCATC-
64 GGTAC-TAAAATTTCAAAATGCATCA
* * * *
48992270 AAAAAGGCCTCAAACTTTTTTAAAAAAAGTAACTAAGCCCCTATTTCTTTTTTTTTCACTCAATT
1 AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAG-CCC--TTACTTTTTTTTGCACTCAATT
** * * *
48992335 GGGTACTTGAATTACCAGAATGCATAA
63 GGGTACTAAAATT-TCAAAATGCATCA
* * * *
48992362 AAAAAGGTCTTCAAACTTTTTCATAAAAAACCAATTAAGCCCTTGCTATTTTTATTGCACTCAAT
1 AAAAAGG-CCTCAAACTTTTTTA-AAAAAAGCAATTAAGCCCTTACT-TTTTT-TTGCACTCAAT
*
48992427 TGGGTACTAAAATTGTCAAAATACATCA
62 TGGGTACTAAAATT-TCAAAATGCATCA
48992455 AAAA
1 AAAA
48992459 GTTTAGAGGT
Statistics
Matches: 151, Mismatches: 29, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
90 37 0.25
91 38 0.25
92 12 0.08
93 52 0.34
94 12 0.08
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (88 bp):
AAAAAGGCCTCAAACTTTTTTAAAAAAAGCAATTAAGCCCTTACTTTTTTTTGCACTCAATTGGG
TACTAAAATTTCAAAATGCATCA
Found at i:48993016 original size:21 final size:21
Alignment explanation
Indices: 48992974--48993055 Score: 57
Period size: 21 Copynumber: 4.0 Consensus size: 21
48992964 TTATAGAAAG
**
48992974 TTTACAA-TTTT-TAATTTTT
1 TTTACAATTTTTATAAAATTT
48992993 TTTACAATTTTTATAAAATTT
1 TTTACAATTTTTATAAAATTT
* **
48993014 TTT-CTAATTTTTTTCTAA-TT
1 TTTAC-AATTTTTATAAAATTT
48993034 TTTA-ATATTTTTATTAAAATTT
1 TTTACA-ATTTTTA-TAAAATTT
48993056 AATAATTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.17
20 16 0.33
21 22 0.46
22 2 0.04
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTACAATTTTTATAAAATTT
Found at i:48993066 original size:10 final size:10
Alignment explanation
Indices: 48992979--48993075 Score: 56
Period size: 10 Copynumber: 9.8 Consensus size: 10
48992969 GAAAGTTTAC
48992979 AATTTTTAAT
1 AATTTTTAAT
* * *
48992989 -TTTTTTTAC
1 AATTTTTAAT
*
48992998 AATTTTTATAA
1 AATTTTTA-AT
**
48993009 AATTTTTTCT
1 AATTTTTAAT
**
48993019 AATTTTTTTCT
1 AA-TTTTTAAT
48993030 AATTTTTAAT
1 AATTTTTAAT
*
48993040 -ATTTTTATT
1 AATTTTTAAT
**
48993049 AAAATTTAAT
1 AATTTTTAAT
48993059 AATTTTT-AT
1 AATTTTTAAT
48993068 AATTTTTA
1 AATTTTTA
48993076 TTTTTTTGTC
Statistics
Matches: 65, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
9 23 0.35
10 24 0.37
11 18 0.28
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:48993075 original size:19 final size:18
Alignment explanation
Indices: 48993013--48993075 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
48993003 TTATAAAATT
* *
48993013 TTTTCTAATTTTTTTCTAA
1 TTTT-TAATATTTTTATAA
48993032 TTTTTAATATTTTTATTAA
1 TTTTTAATATTTTTA-TAA
**
48993051 AATTTAATAATTTTTATAA
1 TTTTTAAT-ATTTTTATAA
48993070 TTTTTA
1 TTTTTA
48993076 TTTTTTTGTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 9 0.25
19 20 0.56
20 7 0.19
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTAATATTTTTATAA
Found at i:48994694 original size:16 final size:17
Alignment explanation
Indices: 48994667--48994700 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
48994657 AATATTTTTG
48994667 TAATTATATTAAGTATT
1 TAATTATATTAAGTATT
*
48994684 TAATT-TATTAATTATT
1 TAATTATATTAAGTATT
48994700 T
1 T
48994701 TTTTAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TAATTATATTAAGTATT
Found at i:48994759 original size:20 final size:20
Alignment explanation
Indices: 48994722--48994762 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
48994712 TCATTAAAAA
*
48994722 TTATAAACAAAAACTAATTT
1 TTATAAACAAAAAATAATTT
48994742 TTATAAA-AAAAATATAATTT
1 TTATAAACAAAAA-ATAATTT
48994762 T
1 T
48994763 AATATTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
TTATAAACAAAAAATAATTT
Found at i:48998540 original size:14 final size:14
Alignment explanation
Indices: 48998521--48998556 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
48998511 GCGTGTGTGA
48998521 CCACACGGCCCCAC
1 CCACACGGCCCCAC
48998535 CCACACGGCCCCAC
1 CCACACGGCCCCAC
*
48998549 CCAAACGG
1 CCACACGG
48998557 GCGTGTGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.58, G:0.17, T:0.00
Consensus pattern (14 bp):
CCACACGGCCCCAC
Found at i:49000265 original size:37 final size:36
Alignment explanation
Indices: 49000223--49000303 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 36
49000213 TTTAATTTTG
*
49000223 TATATATTTCA-TATGTTATTAT-TAATTAGTTTTAAGT
1 TATATATTTCATTAT-TTATTATAT-ATT-GTTTTAAAT
49000260 TATATATTTCATTATTTATTATATATTGTTTTAAAT
1 TATATATTTCATTATTTATTATATATTGTTTTAAAT
49000296 TAATATAT
1 T-ATATAT
49000304 ATATTCTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
36 9 0.22
37 27 0.68
38 4 0.10
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (36 bp):
TATATATTTCATTATTTATTATATATTGTTTTAAAT
Found at i:49002323 original size:12 final size:12
Alignment explanation
Indices: 49002306--49002330 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49002296 ATAATAAAAT
49002306 ATAACAATAATA
1 ATAACAATAATA
49002318 ATAACAATAATA
1 ATAACAATAATA
49002330 A
1 A
49002331 AATCTATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAACAATAATA
Found at i:49002606 original size:12 final size:12
Alignment explanation
Indices: 49002589--49002615 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
49002579 TATATATATT
49002589 TAAATGAAATAC
1 TAAATGAAATAC
49002601 TAAATGAAATAC
1 TAAATGAAATAC
49002613 TAA
1 TAA
49002616 GATAAAGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (12 bp):
TAAATGAAATAC
Found at i:49002647 original size:17 final size:18
Alignment explanation
Indices: 49002627--49002664 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
49002617 ATAAAGGAGC
49002627 AAAAATATT-AAAAAA-AT
1 AAAAAT-TTGAAAAAAGAT
49002644 AAAAATTTGAAAAAAGAT
1 AAAAATTTGAAAAAAGAT
49002662 AAA
1 AAA
49002665 TTTAATTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 12 0.63
18 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAAAATTTGAAAAAAGAT
Found at i:49008722 original size:26 final size:25
Alignment explanation
Indices: 49008681--49008735 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
49008671 AATTATTGTA
* *
49008681 ATTTA-CCCCAAAAAAAAGTAAAGT
1 ATTTACCCCCCAAAAAAAGCAAAGT
49008705 ATTTACCCCCCAAAAAAAGCAAAGT
1 ATTTACCCCCCAAAAAAAGCAAAGT
49008730 ATTTAC
1 ATTTAC
49008736 ACGAGTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.49, C:0.22, G:0.07, T:0.22
Consensus pattern (25 bp):
ATTTACCCCCCAAAAAAAGCAAAGT
Found at i:49019173 original size:31 final size:34
Alignment explanation
Indices: 49019135--49019211 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 34
49019125 TTTAATAAAT
49019135 TTAATTTAATACTTATCTTGATAG-T-AT-TT-TA
1 TTAATTTAATACTTATCTT-ATAGATAATATTCTA
*
49019166 TTAATTTAATATTTATCTTATAGATAAATATTCTA
1 TTAATTTAATACTTATCTTATAGAT-AATATTCTA
49019201 TTAATTTAATA
1 TTAATTTAATA
49019212 GATTTAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 4 0.10
31 19 0.47
33 2 0.05
34 2 0.05
35 13 0.32
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.53
Consensus pattern (34 bp):
TTAATTTAATACTTATCTTATAGATAATATTCTA
Found at i:49019230 original size:12 final size:12
Alignment explanation
Indices: 49019213--49019237 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49019203 AATTTAATAG
49019213 ATTTAATATTAA
1 ATTTAATATTAA
49019225 ATTTAATATTAA
1 ATTTAATATTAA
49019237 A
1 A
49019238 GTGATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:49022630 original size:16 final size:17
Alignment explanation
Indices: 49022609--49022642 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
49022599 GTAGATTGGA
*
49022609 AATTGAAAGTG-GAATG
1 AATTGAAAATGTGAATG
49022625 AATTGAAAATGTGAATG
1 AATTGAAAATGTGAATG
49022642 A
1 A
49022643 CCTATTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.26
Consensus pattern (17 bp):
AATTGAAAATGTGAATG
Found at i:49025414 original size:42 final size:42
Alignment explanation
Indices: 49025309--49025471 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 42
49025299 CGGAAAGCTC
* * * * *
49025309 ATACAATGCCAACGTCCCAGATGTGGTCTTACATGTAATTAA
1 ATACGATGCCAATGTCCCAGATGTGGTCTTACACGAAATCAA
*
49025351 ATATCGATGCCACTGTCCCAGATAG-GGTCTTACACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGAT-GTGGTCTTACACGAAATCAA
*
49025394 ATACGATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATA
1 ATACGATGCCAATGTCCCAGATGTGGTCTTACACG-AAATCA-A
* * *
49025438 AGT-CAATGCCAACT-TCCCAAATGTGTTCTTACAC
1 A-TACGATGCCAA-TGTCCCAGATGTGGTCTTACAC
49025472 AAAAACACAT
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 31 0.30
43 40 0.39
44 28 0.27
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGATGTGGTCTTACACGAAATCAA
Found at i:49028635 original size:21 final size:22
Alignment explanation
Indices: 49028595--49028645 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
49028585 TTTTATAATT
* *
49028595 TATATATATTTCTAATTTTTTA
1 TATATTTATTTCTAATTTTTCA
*
49028617 TATATTTATTTC-GATTTTTCA
1 TATATTTATTTCTAATTTTTCA
*
49028638 TATTTTTA
1 TATATTTA
49028646 ATGTGTACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (22 bp):
TATATTTATTTCTAATTTTTCA
Found at i:49031254 original size:46 final size:45
Alignment explanation
Indices: 49031204--49031386 Score: 181
Period size: 46 Copynumber: 4.0 Consensus size: 45
49031194 ACATTTCATA
49031204 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCAAG
* * * * * *
49031250 GCCGATGCATGTCACAGACATGTCTTATACTAGCACTCTTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCAAG
* * ***
49031296 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATTGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTCAAG
* * *
49031344 ACTGATGCATGTCCCAGACATGTCTTACACTAGC-TCA-CTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCAAG
49031387 TGATCCAAAT
Statistics
Matches: 108, Mismatches: 25, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
46 57 0.53
47 26 0.24
48 20 0.19
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCAAG
Found at i:49031332 original size:94 final size:92
Alignment explanation
Indices: 49031204--49031377 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 92
49031194 ACATTTCATA
* * *
49031204 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAAGGCCGATGCATGTCACAGA
1 GCCGATGCATATCCCAGACATGTCTTACACTGGCTCT-CATATCAAGACCGATGCATGTCACAGA
*
49031268 CATGTCTTATACTAGCACTCTTCTCAAT
65 CATGTCTTACACTAGCACTCTTCTCAAT
*** * *
49031296 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATTGTGACTGATGCATGTCCCAG
1 GCCGATG-CATATCCCAGACAT-GTCTTACACTGGCTCTCATATCAAGACCGATGCATGTCACAG
49031361 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
49031378 TCACTCAAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 49 0.70
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
GCCGATGCATATCCCAGACATGTCTTACACTGGCTCTCATATCAAGACCGATGCATGTCACAGAC
ATGTCTTACACTAGCACTCTTCTCAAT
Found at i:49031740 original size:30 final size:30
Alignment explanation
Indices: 49031706--49031765 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
49031696 AATAATTTAT
* * *
49031706 ACTTTGGCAAAATGATCAATTTGCCCCTAG
1 ACTTTGACAAAATGACCAATTTACCCCTAG
*
49031736 ACTTTGACAAAATGACCATTTTACCCCTAG
1 ACTTTGACAAAATGACCAATTTACCCCTAG
49031766 GTTCGAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (30 bp):
ACTTTGACAAAATGACCAATTTACCCCTAG
Found at i:49034499 original size:7 final size:7
Alignment explanation
Indices: 49034479--49034511 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
49034469 TAAAAATATA
49034479 ATAAA-T
1 ATAAATT
49034485 AT-AATT
1 ATAAATT
49034491 ATAAATT
1 ATAAATT
49034498 ATAAATT
1 ATAAATT
49034505 ATAAATT
1 ATAAATT
49034512 TATATACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 2 0.08
6 5 0.20
7 18 0.72
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATAAATT
Found at i:49040014 original size:18 final size:18
Alignment explanation
Indices: 49039991--49040026 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
49039981 TTTAGTCAAA
49039991 GAAATTAAATTAAAATAC
1 GAAATTAAATTAAAATAC
*
49040009 GAAATTTAATTAAAATAC
1 GAAATTAAATTAAAATAC
49040027 AATAAAGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (18 bp):
GAAATTAAATTAAAATAC
Found at i:49041193 original size:14 final size:14
Alignment explanation
Indices: 49041155--49041193 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
49041145 TTTGCTACCA
*
49041155 TGTTATTATTATGT
1 TGTTATTATTTTGT
49041169 TGTTATTATTTTGT
1 TGTTATTATTTTGT
49041183 TGTTATTATTT
1 TGTTATTATTT
49041194 GAATATTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.69
Consensus pattern (14 bp):
TGTTATTATTTTGT
Found at i:49041436 original size:13 final size:11
Alignment explanation
Indices: 49041402--49041433 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
49041392 TATATATATT
49041402 TAAAAATAATA
1 TAAAAATAATA
49041413 TAAAAATAATA
1 TAAAAATAATA
49041424 TAAAAA-AATA
1 TAAAAATAATA
49041434 ATACGGGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.19
11 17 0.81
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:49043248 original size:46 final size:46
Alignment explanation
Indices: 49043181--49043449 Score: 221
Period size: 46 Copynumber: 5.8 Consensus size: 46
49043171 TATTTGGGCA
*
49043181 TCCGAACGCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
49043227 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
49043272 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
49043320 TTCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* ** *
49043365 CATCCGAGCTTATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * **
49043413 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49043450 GCGGGTTACA
Statistics
Matches: 176, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.05
45 6 0.03
46 85 0.48
47 51 0.29
48 6 0.03
50 8 0.05
51 6 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:49043295 original size:47 final size:47
Alignment explanation
Indices: 49043227--49043395 Score: 177
Period size: 47 Copynumber: 3.6 Consensus size: 47
49043217 GATGCGAACG
49043227 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * *
49043274 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
* *
49043320 TTCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* **
49043367 TCCGAGCTTATTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
49043396 ACTTATGGAT
Statistics
Matches: 96, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 25 0.26
47 51 0.53
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:49043336 original size:93 final size:93
Alignment explanation
Indices: 49043177--49043440 Score: 438
Period size: 93 Copynumber: 2.8 Consensus size: 93
49043167 CGGATATTTG
* *
49043177 GGCATCCGAACGCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
49043242 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
49043270 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
49043335 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
** * * *
49043363 GGCATCCGAGCTTATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
49043428 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
49043441 TGCTTATGGG
Statistics
Matches: 158, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49045256 original size:19 final size:19
Alignment explanation
Indices: 49045229--49045270 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
49045219 TCGAAATTCT
*
49045229 ATCTTATCAAATATGCAAA
1 ATCTAATCAAATATGCAAA
49045248 ATCTAATCAAATATGCAAA
1 ATCTAATCAAATATGCAAA
49045267 ATCT
1 ATCT
49045271 TTCTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.17, G:0.05, T:0.31
Consensus pattern (19 bp):
ATCTAATCAAATATGCAAA
Found at i:49048899 original size:47 final size:47
Alignment explanation
Indices: 49048833--49049118 Score: 464
Period size: 47 Copynumber: 6.1 Consensus size: 47
49048823 GAAATGATAG
49048833 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49048880 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49048927 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49048974 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49049021 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
49049068 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49049115 TAAG
1 TAAG
49049119 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 222 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49049293 original size:37 final size:37
Alignment explanation
Indices: 49049237--49049315 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
49049227 CCGAGCTCTA
* *
49049237 AAGACCCGATGACTACGTGT-GAGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
49049274 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49049311 AAGAC
1 AAGAC
49049316 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 35 0.92
38 3 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49051219 original size:28 final size:28
Alignment explanation
Indices: 49051183--49051250 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
49051173 TAAGTGTGTG
*
49051183 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTTCACGGTTGTGAGATT
49051211 GGCACTAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTTCACGGTTGTGAGATT
49051239 GGCACTAAGTGT
1 GGCACTAAGTGT
49051251 GCGGGCTTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTTCACGGTTGTGAGATT
Found at i:49051280 original size:29 final size:29
Alignment explanation
Indices: 49051238--49051311 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
49051228 GTTGTGAGAT
* *
49051238 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
49051267 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
49051296 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49051312 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:49051745 original size:40 final size:40
Alignment explanation
Indices: 49051701--49051897 Score: 304
Period size: 40 Copynumber: 4.9 Consensus size: 40
49051691 GAGTTACTAA
49051701 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
49051741 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
49051781 ATCCGGGCTAAGTCCCAAAAAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
49051821 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
49051861 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
49051898 CGTGTATTCG
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:49051759 original size:80 final size:79
Alignment explanation
Indices: 49051622--49051897 Score: 315
Period size: 80 Copynumber: 3.5 Consensus size: 79
49051612 TCGAATGATG
** ** *
49051622 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCGAAGAGCA
* * * *
49051684 TTGGTGCGAGTTACTAAA
63 TTCGTGCTAGTGA-TATA
49051702 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATT
* * *
49051767 CATGCTAGCGATGTA
65 CGTGCTAGTGATATA
* *
49051782 TCCGGGCTAAGTCCCAAAAAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATT
49051847 CGTGCTAGTGATATA
65 CGTGCTAGTGATATA
* * * *
49051862 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
49051898 CGTGTATTCG
Statistics
Matches: 168, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 142 0.85
81 19 0.11
82 6 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
GTGCTAGTGATATA
Found at i:49055696 original size:47 final size:47
Alignment explanation
Indices: 49055584--49056108 Score: 834
Period size: 47 Copynumber: 11.1 Consensus size: 47
49055574 GAAATGATAG
49055584 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
49055633 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49055680 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49055727 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
49055776 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
49055823 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49055870 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49055917 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49055964 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49056011 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
49056058 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49056105 TAAG
1 TAAG
49056109 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 365 0.82
49 82 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49055842 original size:143 final size:143
Alignment explanation
Indices: 49055584--49056053 Score: 854
Period size: 143 Copynumber: 3.3 Consensus size: 143
49055574 GAAATGATAG
*
49055584 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
49055649 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
49055714 TGTATATATGTGA
131 TGTATATATGTGA
49055727 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
49055792 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAA
66 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
*
49055857 TGTATATGTGTGA
131 TGTATATATGTGA
49055870 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * *
49055933 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
49055998 TGTATATATGTGA
131 TGTATATATGTGA
*
49056011 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
49056054 GTGACGGGGC
Statistics
Matches: 315, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
141 134 0.43
143 181 0.57
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (143 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:49056283 original size:37 final size:37
Alignment explanation
Indices: 49056227--49056305 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
49056217 CCGAGCTCTA
* * *
49056227 AAGACCTGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
49056264 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49056301 AAGAC
1 AAGAC
49056306 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49067480 original size:30 final size:30
Alignment explanation
Indices: 49067446--49067506 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49067436 TCCTTAACTC
49067446 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
49067476 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
49067506 A
1 A
49067507 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:49072367 original size:46 final size:46
Alignment explanation
Indices: 49072300--49072419 Score: 224
Period size: 46 Copynumber: 2.6 Consensus size: 46
49072290 TGTAACCCAC
49072300 CCATAAGTGAACTCAGACTCAACTCAACAATCTCTGGTGTGCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACAATCTCTGGTGTGCGCAT
49072346 CCATAAGTGAACTCAGACTCAACTCAACAATCTCTGGTGTGCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACAATCTCTGGTGTGCGCAT
49072392 CCATAAGTGAACTC-GAACTCAACTCAAC
1 CCATAAGTGAACTCAG-ACTCAACTCAAC
49072420 GAGTTCAGAT
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
45 1 0.01
46 72 0.99
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACAATCTCTGGTGTGCGCAT
Done.