Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 149 of 373
Found at i:49432438 original size:25 final size:25
Alignment explanation
Indices: 49432410--49432488 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
49432400 CTAATGGCCG
49432410 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
49432435 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
49432457 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
49432482 ATGTGAT
1 ATGTGAT
49432489 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:49432995 original size:37 final size:37
Alignment explanation
Indices: 49432939--49433017 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49432929 CCGAGCTCTA
* * *
49432939 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49432976 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49433013 AAGAC
1 AAGAC
49433018 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49439267 original size:553 final size:553
Alignment explanation
Indices: 49438221--49439323 Score: 1965
Period size: 553 Copynumber: 2.0 Consensus size: 553
49438211 CAATACACGA
* *
49438221 GTCCTAAAACCCAAGCCACTTCATTATCGAGCGTTGGTAGTGTTAGAATCAACAAACCCGAGTGT
1 GTCCTAAAACCCAAGCCACTTCATTATCGAGCGTTGGTACTATTAGAATCAACAAACCCGAGTGT
* * *
49438286 CAATAGTGTGGTAGGCGACATTTTGGAGACTTTTGGATGAATAATAAAGGTTGTTTCAAATGTGG
66 CAAAAGTGTGGTAGACGACATTTTGGAGACTGTTGGATGAATAATAAAGGTTGTTTCAAATGTGG
*
49438351 CTCGCAAGATCATTTCATTTGAGCTTATCCTAAGTTACCCGAGAAAGATAGATATTAGAATGCAA
131 CTCGCAAGATCATTTCATTTGAGATTATCCTAAGTTACCCGAGAAAGATAGATATTAGAATGCAA
* *
49438416 GACCGAGTAACACAGCTGCTAGAGGGAGACCACCTAGAAATATGGGAAATGTGAGTAGAGGCAAA
196 GACCGAGTAACACAGCTACTAGAGGGAGACCACCTAGAAATATGGGAAATGTGACTAGAGGCAAA
* *
49438481 AGAGTGACAAAGGACTCTGTTGTGAGATTCGAGGCTAGAGCACCAGCCAGAGCTTATGCTATTCG
261 AGAGTGACAAAGGACTCTGTTGTGAGATTCGAGGCTAGAGCACCAACCAGAGCTTACGCTATTCG
49438546 CGCTAGCGAAGATGCATCGTCACCAGATCTTATCACCGATCCATTTTCTTTCTATGACACTAATG
326 CGCTAGCGAAGATGCATCGTCACCAGATCTTATCACCGATCCATTTTCTTTCTATGACACTAATG
*
49438611 TGATTGACTTGATTGATCCTGGATCTACTCATTCATATATCTGTATGAATCTAGTGTCTAGTAAG
391 TAATTGACTTGATTGATCCTGGATCTACTCATTCATATATCTGTATGAATCTAGTGTCTAGTAAG
*
49438676 AGTTTGCCCATTGAGTCTACTAAATTTGTGATTAAAGTATCGAATGCCTTAGGCAAGTATGTCCT
456 AGTTTGCCCATTGAGTCTACTAAATTTGTGATTAAAGTATCGAATCCCTTAGGCAAGTATGTCCT
* *
49438741 AGTTGATAAGGTTTGCTAGAATTTTCCTTTGAT
521 AATTGATAAGGTTTGCTAGAATTGTCCTTTGAT
* * *
49438774 GTCCTAAAACCCAAGCCACTTTATTATCGAGCGTTGGTACTATTAGAATGAACAAACCTGAGTGT
1 GTCCTAAAACCCAAGCCACTTCATTATCGAGCGTTGGTACTATTAGAATCAACAAACCCGAGTGT
* * *
49438839 CAAAAGTGTGGTAGATGACATTTTGGCGACTGTTGGATGAATAATAAAGGTTGTTTCCAATGTGG
66 CAAAAGTGTGGTAGACGACATTTTGGAGACTGTTGGATGAATAATAAAGGTTGTTTCAAATGTGG
49438904 CTCGCAAGATCATTTCATTTGAGATTATCCTAAGTTACCCGAGAAAGATAGATATTAGAATGCAA
131 CTCGCAAGATCATTTCATTTGAGATTATCCTAAGTTACCCGAGAAAGATAGATATTAGAATGCAA
49438969 GACCGAGTAACACAGCTACTAGAGGGAGACCACCTAGAAATATGGGAAATGTGACTAGAGG-AAA
196 GACCGAGTAACACAGCTACTAGAGGGAGACCACCTAGAAATATGGGAAATGTGACTAGAGGCAAA
*
49439033 AGGAGTGACAAAGGACTCTGTTGTGAGATTCGAGGCTAGAGCACCAACCAGAGCTTACGCTATTT
261 A-GAGTGACAAAGGACTCTGTTGTGAGATTCGAGGCTAGAGCACCAACCAGAGCTTACGCTATTC
* * *
49439098 GCGCTAGCGAAGATGTATCGTCACCGGATCTTATCACTGATCCATTTTCTTTCTATGACACTAAT
325 GCGCTAGCGAAGATGCATCGTCACCAGATCTTATCACCGATCCATTTTCTTTCTATGACACTAAT
*
49439163 GTAATTGCCTTGATTGATCCTGGATCTACTCATTCATATATCTGTATGAATCTAGTGTCTAGTAA
390 GTAATTGACTTGATTGATCCTGGATCTACTCATTCATATATCTGTATGAATCTAGTGTCTAGTAA
49439228 GAGTTTGCCCATTGAGTCTACTAAATTTGTGATTAAAGTATCGAATCCCTTAGGCAAGTATGTCC
455 GAGTTTGCCCATTGAGTCTACTAAATTTGTGATTAAAGTATCGAATCCCTTAGGCAAGTATGTCC
49439293 TAATTGATAAGGTTTGCTAGAATTGTCCTTT
520 TAATTGATAAGGTTTGCTAGAATTGTCCTTT
49439324 CATGACTCGT
Statistics
Matches: 524, Mismatches: 25, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
552 4 0.01
553 520 0.99
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (553 bp):
GTCCTAAAACCCAAGCCACTTCATTATCGAGCGTTGGTACTATTAGAATCAACAAACCCGAGTGT
CAAAAGTGTGGTAGACGACATTTTGGAGACTGTTGGATGAATAATAAAGGTTGTTTCAAATGTGG
CTCGCAAGATCATTTCATTTGAGATTATCCTAAGTTACCCGAGAAAGATAGATATTAGAATGCAA
GACCGAGTAACACAGCTACTAGAGGGAGACCACCTAGAAATATGGGAAATGTGACTAGAGGCAAA
AGAGTGACAAAGGACTCTGTTGTGAGATTCGAGGCTAGAGCACCAACCAGAGCTTACGCTATTCG
CGCTAGCGAAGATGCATCGTCACCAGATCTTATCACCGATCCATTTTCTTTCTATGACACTAATG
TAATTGACTTGATTGATCCTGGATCTACTCATTCATATATCTGTATGAATCTAGTGTCTAGTAAG
AGTTTGCCCATTGAGTCTACTAAATTTGTGATTAAAGTATCGAATCCCTTAGGCAAGTATGTCCT
AATTGATAAGGTTTGCTAGAATTGTCCTTTGAT
Found at i:49444958 original size:22 final size:23
Alignment explanation
Indices: 49444933--49445052 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 23
49444923 GCCGATAAAT
*
49444933 GGTAAGCTCAATTGAGCTG-AAC
1 GGTAAGCTCAATAGAGCTGAAAC
**
49444955 GGTAAGCTCCGTAGAGCTGAAAC
1 GGTAAGCTCAATAGAGCTGAAAC
** *
49444978 GGTAAGC-CCGTA-AGGATTGAAAC
1 GGTAAGCTCAATAGA-G-CTGAAAC
* *
49445001 GGTAAGCTCGGA-AGAGCT-AAAT
1 GGTAAGCTC-AATAGAGCTGAAAC
49445023 GGTAAGCTC-ATAAGAGCTG-AAC
1 GGTAAGCTCAAT-AGAGCTGAAAC
*
49445045 AGTAAGCT
1 GGTAAGCT
49445053 TATACGAGCT
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 49 0.62
23 24 0.30
24 3 0.04
25 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.19
Consensus pattern (23 bp):
GGTAAGCTCAATAGAGCTGAAAC
Found at i:49444982 original size:23 final size:23
Alignment explanation
Indices: 49444946--49445052 Score: 91
Period size: 22 Copynumber: 4.8 Consensus size: 23
49444936 AAGCTCAATT
49444946 GAGCTG-AACGGTAAGCTCCGTA
1 GAGCTGAAACGGTAAGCTCCGTA
49444968 GAGCTGAAACGGTAAGC-CCGTA
1 GAGCTGAAACGGTAAGCTCCGTA
* * *
49444990 -AGGATTGAAACGGTAAGCTCGGAA
1 GA-G-CTGAAACGGTAAGCTCCGTA
* *
49445014 GAGCT-AAATGGTAAGCT-CATAA
1 GAGCTGAAACGGTAAGCTCCGT-A
*
49445036 GAGCTG-AACAGTAAGCT
1 GAGCTGAAACGGTAAGCT
49445053 TATACGAGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
21 1 0.01
22 38 0.56
23 24 0.35
24 4 0.06
25 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (23 bp):
GAGCTGAAACGGTAAGCTCCGTA
Found at i:49446714 original size:60 final size:60
Alignment explanation
Indices: 49446621--49446740 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
49446611 CTATGAAAGG
49446621 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGACAGAGATAGAGTA
1 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGACAGAGATAGAGTA
* *
49446681 GCAATTGATACTATGGATAGTGAGATCGACACTTTGAGTAAGTTTGACAGAGATAGAGTA
1 GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGACAGAGATAGAGTA
49446741 TTGAAAAATC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (60 bp):
GCAATTGATACTATGGATAGTGAGATCGACACTTCGAGTAAGTTCGACAGAGATAGAGTA
Found at i:49446882 original size:45 final size:45
Alignment explanation
Indices: 49446809--49446935 Score: 125
Period size: 44 Copynumber: 2.9 Consensus size: 45
49446799 GAATTAAGAA
** * * * *
49446809 ATCTGAACTTTTTGAGTTAGTCCAAGTTCGTGATATATATAAG-GC
1 ATCTGAACTCGTTGAATTGGTCCGAGTTCAT-ATATATATAAGAGC
** **
49446854 ATCTGAACTCGTTGAATTGGTCCGAGTTCAT-TATGGATGGGAGC
1 ATCTGAACTCGTTGAATTGGTCCGAGTTCATATATATATAAGAGC
*
49446898 ATCCGAACTCGTTGAATTGGTCCGAGTTCATA-ATATAT
1 ATCTGAACTCGTTGAATTGGTCCGAGTTCATATATATAT
49446936 GCGATACATG
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
43 6 0.09
44 36 0.54
45 25 0.37
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.35
Consensus pattern (45 bp):
ATCTGAACTCGTTGAATTGGTCCGAGTTCATATATATATAAGAGC
Found at i:49453321 original size:39 final size:39
Alignment explanation
Indices: 49453267--49453483 Score: 380
Period size: 39 Copynumber: 5.6 Consensus size: 39
49453257 ATCATAATTG
49453267 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
49453306 TATGTGGTGGAATTATATCCGGACTTCAGGACCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
49453345 TATGTGCTAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
49453384 TATGTGCTGGAATTATATCCGGACTTCAGGTCTGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
49453423 TATGTGCTGGAATTTTATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
49453462 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
49453484 GCTTAAATTC
Statistics
Matches: 167, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 167 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:49461138 original size:39 final size:39
Alignment explanation
Indices: 49461084--49461418 Score: 598
Period size: 39 Copynumber: 8.6 Consensus size: 39
49461074 GATCATAATT
*
49461084 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGGAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
*
49461123 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGTAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
* *
49461162 CTATGTGCTGGAATTTTATCCAGACTTCAGGTCCGCAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
49461201 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
49461240 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
*
49461279 CTATGTGCTGGAATTTTATCCGGACTTCAGGTCCGCAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
49461318 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
* *
49461357 CTATGTGCTGGAATTTTATCCGGACTTCAGGTCCACAGG
1 CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
*
49461396 CTATGAGCTGGAATTATATCCGG
1 CTATGTGCTGGAATTATATCCGG
49461419 GCTTAAATTC
Statistics
Matches: 284, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 284 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
CTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGG
Found at i:49466128 original size:37 final size:38
Alignment explanation
Indices: 49466078--49466157 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
49466068 TTATTACGAA
* *
49466078 GTCTTACCCGGAC-ATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAATTC-CCACACGAAGTCATCGG
*
49466115 GTCTTACCCGGACAAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
49466153 GTCTT
1 GTCTT
49466158 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.34
38 23 0.61
39 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
Found at i:49466354 original size:47 final size:47
Alignment explanation
Indices: 49466276--49466697 Score: 624
Period size: 47 Copynumber: 9.1 Consensus size: 47
49466266 CCCTTCGGGA
* * * * * * *
49466276 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
49466323 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49466370 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49466417 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49466464 CTTATCACATATATACACTTTCGCATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49466511 CTTATCACATATATACACTTTCACATTCATCACATCGG-C--TA---
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49466552 -TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49466598 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49466645 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49466694 CTTA
1 CTTA
49466698 CTATCATTTC
Statistics
Matches: 341, Mismatches: 25, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
40 36 0.11
43 2 0.01
44 2 0.01
47 259 0.76
49 42 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49470456 original size:40 final size:40
Alignment explanation
Indices: 49470399--49470661 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
49470389 CCAGCATGAT
* * *
49470399 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
49470439 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49470479 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
49470519 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
49470559 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* **
49470600 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
49470640 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
49470662 CATCATTCGA
Statistics
Matches: 196, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 174 0.89
41 19 0.10
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:49470484 original size:80 final size:80
Alignment explanation
Indices: 49470386--49470661 Score: 342
Period size: 80 Copynumber: 3.5 Consensus size: 80
49470376 CGAATACACG
* * * *
49470386 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
49470451 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* * *
49470466 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
49470531 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* * * * *
49470546 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGA
* * **
49470610 TCTTAGTCCGGATATGG
65 ACTTAGCCCGGATA-CA
* *
49470627 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
49470662 CATCATTCGA
Statistics
Matches: 171, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 147 0.86
81 19 0.11
82 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAA
CTTAGCCCGGATACA
Found at i:49471006 original size:29 final size:29
Alignment explanation
Indices: 49470967--49471045 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
49470957 CTTAATAATC
*
49470967 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
49470997 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
49471026 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
49471046 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:49471088 original size:43 final size:43
Alignment explanation
Indices: 49471027--49471172 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
49471017 TGCATTTCAA
49471027 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
49471070 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
49471113 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
49471156 GCCCGCACACGTAGTGC
1 GCCCGCACACTTAGTGC
49471173 TGAAAACCAA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.27, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:49473075 original size:37 final size:38
Alignment explanation
Indices: 49473025--49473104 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
49473015 TTATTACGAA
* *
49473025 GTCTTACCCGGAC-ATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAATTC-CCACACGAAGTCATCGG
*
49473062 GTCTTACCCGGACAAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
49473100 GTCTT
1 GTCTT
49473105 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.34
38 23 0.61
39 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
Found at i:49473301 original size:47 final size:47
Alignment explanation
Indices: 49473223--49473597 Score: 539
Period size: 47 Copynumber: 8.1 Consensus size: 47
49473213 CCCTTCGGGA
* * * * * * *
49473223 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
49473270 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49473317 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49473364 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49473411 CTTATCACATATATACACTTTCACATTCATCACATCGG-C--TA---
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49473452 -TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49473498 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49473545 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49473594 CTTA
1 CTTA
49473598 CTATCATTTC
Statistics
Matches: 296, Mismatches: 23, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
40 36 0.12
43 2 0.01
44 2 0.01
47 214 0.72
49 42 0.14
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49473512 original size:134 final size:134
Alignment explanation
Indices: 49473223--49473590 Score: 493
Period size: 134 Copynumber: 2.7 Consensus size: 134
49473213 CCCTTCGGGA
** * * * * * * ***
49473223 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
49473288 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCACATC
66 TTTCACATTCATCACATCGG-C--TA----TTATCACACATATACACTTCCACATTCATCACATC
49473353 GGCCATTAGGC
124 GGCCATTAGGC
* * *
49473364 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
49473429 TTTCACATTCATCACATCGGCTATTATCACACATATACACTTTCACATTCATCACATCGGCTATT
66 TTTCACATTCATCACATCGGCTATTATCACACATATACACTTCCACATTCATCACATCGGCCATT
49473494 AGGC
131 AGGC
49473498 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
49473563 ACTTTCACATTCATCACATCGGCCATTA
64 ACTTTCACATTCATCACATCGGCTATTA
49473591 GGCCTTACTA
Statistics
Matches: 206, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
134 95 0.46
136 35 0.17
138 2 0.01
140 1 0.00
141 73 0.35
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (134 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTATCACACATATACACTTCCACATTCATCACATCGGCCATT
AGGC
Found at i:49476717 original size:85 final size:85
Alignment explanation
Indices: 49476574--49476751 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 85
49476564 GGCCGGCCAT
49476574 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
49476639 GTAAGAATTAATAAAATAAA
66 GTAAGAATTAATAAAATAAA
49476659 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
49476724 GTAAGGATTAATAAAATAAA
66 GTAAGAATTAATAAAATAAA
*
49476744 GGGCATGG
1 GAGCATGG
49476752 ACAATAAAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGAATTAATAAAATAAA
Found at i:49478931 original size:47 final size:47
Alignment explanation
Indices: 49478880--49479364 Score: 673
Period size: 47 Copynumber: 10.1 Consensus size: 47
49478870 TTAGGATTTT
* * *
49478880 ATGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
49478927 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
49478978 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
49479025 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
49479072 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
49479123 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
49479170 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
49479221 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
49479268 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
49479315 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
49479362 ATG
1 ATG
49479365 CGAAACGTGT
Statistics
Matches: 395, Mismatches: 31, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
47 261 0.66
49 6 0.02
51 128 0.32
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:49478991 original size:98 final size:94
Alignment explanation
Indices: 49478880--49479364 Score: 682
Period size: 98 Copynumber: 5.0 Consensus size: 94
49478870 TTAGGATTTT
* * *
49478880 ATGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
49478945 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
49478978 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
49479043 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
**
49479072 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
49479137 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
**
49479170 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
49479235 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
49479268 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
49479333 TGAATATATGTGGTAAGGCCGAATGGCTA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
49479362 ATG
1 ATG
49479365 CGAAACGTGT
Statistics
Matches: 362, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
94 114 0.31
96 3 0.01
98 245 0.68
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:49478997 original size:145 final size:144
Alignment explanation
Indices: 49478881--49479364 Score: 688
Period size: 145 Copynumber: 3.3 Consensus size: 144
49478871 TAGGATTTTA
49478881 TGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
1 TGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
49478946 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
49479011 AGGCCGAATGGCCAC
131 AGG-CGAATGGCCAC
*
49479026 TGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
1 TGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
49479091 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
*
49479156 AGGCCGAATGGCCAA
131 AGG-CGAATGGCCAC
* *** *
49479171 TGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 TGTGATGGATGTGAA--C--ATGCGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGA
*** * * *
49479236 A--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
62 ACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
*
49479297 GATAAGGCCGAATGGCCAA
127 GATAAGG-CGAATGGCCAC
* ** * ** *
49479316 TGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 TGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCAATG
49479365 CGAAACGTGT
Statistics
Matches: 318, Mismatches: 17, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
141 28 0.09
143 1 0.00
145 244 0.77
147 2 0.01
149 43 0.14
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (144 bp):
TGTGATGGATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACCC
GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCGAATGGCCAC
Found at i:49479127 original size:24 final size:24
Alignment explanation
Indices: 49479099--49479174 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
49479089 CCGTATATAT
49479099 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
49479123 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
49479146 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
49479170 ATGTG
1 ATGTG
49479175 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:49479225 original size:24 final size:24
Alignment explanation
Indices: 49479197--49479272 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
49479187 CCGTATATAT
49479197 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
49479221 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
49479244 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
49479268 ATGTG
1 ATGTG
49479273 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:49479427 original size:46 final size:46
Alignment explanation
Indices: 49479338--49479428 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
49479328 GAACATGAAT
* * *
49479338 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTACGAGATGG
* * *
49479384 ATATGTGGTAAAGCC-AATTGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCGAA-TGGCTAATGCGAAACATGTACGAGATG
49479429 TGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 2 0.05
46 36 0.95
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:49479680 original size:37 final size:37
Alignment explanation
Indices: 49479572--49479680 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
49479562 GGAAATATAT
*
49479572 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
49479609 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
49479646 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
49479681 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:49482963 original size:37 final size:37
Alignment explanation
Indices: 49482904--49483012 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
49482894 AGCTCAGACG
* * *
49482904 AAATCTCCACACGAATTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
49482941 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
49482978 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
49483013 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:49483286 original size:48 final size:48
Alignment explanation
Indices: 49483158--49483342 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
49483148 GCACATCGCC
*
49483158 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
49483208 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
49483256 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49483304 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
49483343 TGCATGTTCA
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
48 80 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:49483347 original size:98 final size:97
Alignment explanation
Indices: 49483158--49483341 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
49483148 GCACATCGCC
* *
49483158 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGATTTACCACATATACATATCTCA-ATACATATTTCACATT
49483223 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
49483256 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGATTTACCACATATACATATCTCAATACATATTTCACATTG
*
49483319 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
49483342 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
98 44 0.55
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGATTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:49483376 original size:47 final size:47
Alignment explanation
Indices: 49483312--49483458 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
49483302 CATACATATT
* * * *
49483312 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
49483359 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
49483406 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
49483453 TCACAT
1 TCACAT
49483459 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:49494193 original size:28 final size:28
Alignment explanation
Indices: 49494161--49494230 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
49494151 ATAGTAAGTC
*
49494161 CGCACACTTTGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
49494189 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
49494217 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49494231 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 34 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:49498310 original size:48 final size:48
Alignment explanation
Indices: 49498236--49498406 Score: 254
Period size: 48 Copynumber: 3.6 Consensus size: 48
49498226 ATGCCATACA
* * *
49498236 ACCATGTCTGGGACATGGCATTGACATTTTTATGTGAGCCAATGTAAG
1 ACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAG
*
49498284 ACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCGGTGTAAG
1 ACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAG
*
49498332 ACCATGTCTAGGACATGGCATCTG-CATTGTTATGTGAGCCAGTGTAAG
1 ACCATGTCTGGGACATGGCATC-GACATTGTTATGTGAGCCAGTGTAAG
* * *
49498380 ACCATGTATGGGATATGACATCGACAT
1 ACCATGTCTGGGACATGGCATCGACAT
49498407 GAGGCATCGT
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
47 1 0.01
48 109 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
ACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTGTAAG
Found at i:49498713 original size:11 final size:11
Alignment explanation
Indices: 49498694--49498728 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
49498684 TCCTATGAAA
*
49498694 ATGATCTTGTG
1 ATGACCTTGTG
49498705 ATGACCTTGTG
1 ATGACCTTGTG
49498716 ATGACCTTGTG
1 ATGACCTTGTG
49498727 AT
1 AT
49498729 TATAAGTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.40
Consensus pattern (11 bp):
ATGACCTTGTG
Found at i:49502341 original size:13 final size:13
Alignment explanation
Indices: 49502323--49502349 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49502313 TACTTTGTCG
49502323 CGAATTTGAAATT
1 CGAATTTGAAATT
49502336 CGAATTTGAAATT
1 CGAATTTGAAATT
49502349 C
1 C
49502350 AATGTCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (13 bp):
CGAATTTGAAATT
Found at i:49503311 original size:26 final size:26
Alignment explanation
Indices: 49503260--49503311 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
49503250 CTTCAACACC
*
49503260 TAGGGGAATTTGGTCATTTTCGCCTT
1 TAGGGGAATTTGGTAATTTTCGCCTT
*
49503286 TAGGGGCATTCTGGTAATTTTC-CCTT
1 TAGGGGAATT-TGGTAATTTTCGCCTT
49503312 AATTATGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.15, C:0.17, G:0.25, T:0.42
Consensus pattern (26 bp):
TAGGGGAATTTGGTAATTTTCGCCTT
Found at i:49503645 original size:29 final size:29
Alignment explanation
Indices: 49503571--49503685 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
49503561 TACATACATG
* * *
49503571 CATAAGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACAAGGCCCAATTCATATT
* * *
49503599 CAAATGGCCCATC-TGGCCCAGTTCATATT
1 CATATGGCCCA-CAAGGCCCAATTCATATT
* **
49503628 CTTATGGCCCACAAGGCCCAATTCACCTT
1 CATATGGCCCACAAGGCCCAATTCATATT
** *
49503657 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACAAGGCCCAATTCATATT
49503686 ATACTCATTC
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 16 0.24
29 51 0.76
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CATATGGCCCACAAGGCCCAATTCATATT
Found at i:49503683 original size:58 final size:57
Alignment explanation
Indices: 49503576--49503685 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
49503566 ACATGCATAA
* * **
49503576 GGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCTTAT
1 GGCCCACAAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCTTAT
*
49503633 GGCCCACAAGGCCCAAT-TCACCTTCATATGGCCCAT-TAGGCCCAAATCATATT
1 GGCCCACAAGGCCCAATCTCA--TTCAAATGGCCCATCT-GGCCCAAATCATATT
49503686 ATACTCATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
56 2 0.04
57 17 0.38
58 26 0.58
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.26
Consensus pattern (57 bp):
GGCCCACAAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCTTAT
Found at i:49506394 original size:18 final size:18
Alignment explanation
Indices: 49506357--49506394 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
49506347 ACAGTAACAA
*
49506357 TAATCAGTGCAGAAATAG
1 TAATCAGTGCAGAAAGAG
49506375 TAATCAGTGCA-ATAAGAG
1 TAATCAGTGCAGA-AAGAG
49506393 TA
1 TA
49506395 TACAAGTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.24
Consensus pattern (18 bp):
TAATCAGTGCAGAAAGAG
Found at i:49506756 original size:27 final size:27
Alignment explanation
Indices: 49506738--49506920 Score: 276
Period size: 27 Copynumber: 6.8 Consensus size: 27
49506728 ATCTTACCTT
49506738 ATAAGGGCAAAACAATCATTTTACCAC
1 ATAAGGGCAAAACAATCATTTTACCAC
**
49506765 ATAAGGGCAAAACAGCCATTTTACCAC
1 ATAAGGGCAAAACAATCATTTTACCAC
** *
49506792 ATAAGGATAAAACAATCATTTTACAAC
1 ATAAGGGCAAAACAATCATTTTACCAC
*
49506819 ATAAGGGCAAAATAATCATTTTACCAC
1 ATAAGGGCAAAACAATCATTTTACCAC
*
49506846 ATAAGGGCAAAACAATCATTTTACTAC
1 ATAAGGGCAAAACAATCATTTTACCAC
* * *
49506873 ATAAAGGCAAAATAAACATTTTACCAC
1 ATAAGGGCAAAACAATCATTTTACCAC
49506900 ATAAGGGCAAAACAATCATTT
1 ATAAGGGCAAAACAATCATTT
49506921 ATCAATTTGG
Statistics
Matches: 136, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.23
Consensus pattern (27 bp):
ATAAGGGCAAAACAATCATTTTACCAC
Found at i:49507072 original size:17 final size:19
Alignment explanation
Indices: 49507038--49507078 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
49507028 TATACTACGG
49507038 GCCCATGTGGTCCCACAT-
1 GCCCATGTGGTCCCACATA
*
49507056 GCCCGTGTGGT-CCACATA
1 GCCCATGTGGTCCCACATA
49507074 GCCCA
1 GCCCA
49507079 AAAATGGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.17, C:0.39, G:0.24, T:0.20
Consensus pattern (19 bp):
GCCCATGTGGTCCCACATA
Found at i:49509803 original size:29 final size:29
Alignment explanation
Indices: 49509754--49509827 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
49509744 AATCATATTC
* *
49509754 ATATGG-CCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCAAAATCACATGT
*
49509782 ATATGGCCCATTAGGCCAAAATCACATTT
1 ATATGGCCCATTAGGCCAAAATCACATGT
*
49509811 ATATGGCCCGTTAGGCC
1 ATATGGCCCATTAGGCC
49509828 TAGTCACATT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 6 0.15
29 35 0.85
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCAAAATCACATGT
Found at i:49511177 original size:37 final size:38
Alignment explanation
Indices: 49511033--49511187 Score: 219
Period size: 37 Copynumber: 4.2 Consensus size: 38
49511023 CTCAGATGAA
** * *
49511033 ATCTCCACACAAAGTTATCGGGTCTTACCCGGACA-AA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAT
49511070 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATA-
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAT
*
49511107 ATCTCCACACGAAGTCATCGGGTCTTACCCGGA-ATAT
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAT
*
49511144 ATTTCCACACGTAGTCATCGGGTCTTACCCGGA-ATAT
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAT
*
49511181 ATTTCCA
1 ATCTCCA
49511188 AGTTTCATGT
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
36 3 0.03
37 106 0.96
38 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (38 bp):
ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAT
Found at i:49511674 original size:50 final size:48
Alignment explanation
Indices: 49511323--49511664 Score: 594
Period size: 48 Copynumber: 7.0 Consensus size: 48
49511313 ACACATCGCC
*
49511323 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
49511371 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49511419 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49511467 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49511515 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA--TCTCA
49511565 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
49511615 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49511663 TA
1 TA
49511665 TATCAATTTC
Statistics
Matches: 282, Mismatches: 8, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
48 187 0.66
50 95 0.34
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:49515120 original size:57 final size:53
Alignment explanation
Indices: 49515018--49515145 Score: 136
Period size: 57 Copynumber: 2.3 Consensus size: 53
49515008 CCACTGACTG
*
49515018 ATTTCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTAC-C
1 ATTT-GCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTC---TACTC
* *
49515074 AATCTTGCACACATAGTGCTC-AGTTGAAGAACTCGCACTC-TCAGTGCCTCTACTC
1 -AT-TTGCACACATAGTGCTCGA-TTAAAGAACTCGCACACAT-AGTGCCTCTACTC
49515129 ATTTGCACACATAGTGC
1 ATTTGCACACATAGTGC
49515146 CCCTATTCAT
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
53 15 0.23
54 5 0.08
55 1 0.02
56 2 0.03
57 39 0.61
58 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (53 bp):
ATTTGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCTACTC
Found at i:49515366 original size:40 final size:40
Alignment explanation
Indices: 49515334--49515720 Score: 531
Period size: 40 Copynumber: 9.7 Consensus size: 40
49515324 CCAGCATGAT
* * * *
49515334 TGCTCTTTGGGACCTAGCCCGGTTATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * * *
49515374 TGCTCTTCGGGACTTAACCCTGATGTAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* *
49515414 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
49515454 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
49515494 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
49515534 TGCTCTTCGGGACTTATCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * * * *
49515574 TGCTCTTCGAGACTTAGCCCGGAGACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
49515614 TTCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
49515654 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
49515694 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
49515721 TATAACTCTC
Statistics
Matches: 300, Mismatches: 47, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 300 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:49517039 original size:37 final size:37
Alignment explanation
Indices: 49516980--49517051 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
49516970 AGCTCAGATG
* *
49516980 AAATCTCCATACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACA
**
49517017 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACAAAGTCATCGGGTCTTACCCGGA
49517052 TTATATTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACA
Found at i:49517253 original size:48 final size:48
Alignment explanation
Indices: 49517198--49517928 Score: 1264
Period size: 48 Copynumber: 15.1 Consensus size: 48
49517188 ACACATCGCC
*
49517198 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49517246 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49517294 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49517342 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49517390 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49517438 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
** *
49517486 TACATATTTCGTATTAGCCATTTGGCTTTACCACATATACATATCTCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
49517536 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
49517584 TACATATTTCACATTAGCCATTTGGCTTTGCCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49517632 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49517680 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
49517730 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49517778 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
49517826 TACATATTTCACATTAGCCATTCAGCTTTACCAGATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
49517876 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49517924 TACAT
1 TACAT
49517929 CAATTTCCGC
Statistics
Matches: 650, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
48 515 0.79
50 135 0.21
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:49517665 original size:194 final size:194
Alignment explanation
Indices: 49517198--49517922 Score: 1283
Period size: 194 Copynumber: 3.7 Consensus size: 194
49517188 ACACATCGCC
*
49517198 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
49517263 CCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
49517328 ATATACTTATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
131 ATATACATATCTCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49517390 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* ** *
49517455 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCGTATTAGCCATTTGGCTTTACCAC
66 CCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
49517520 ATATACATATCTCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
131 ATATACATATCTCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
49517584 TACATATTTCACATTAGCCATTTGGCTTTGCCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
49517649 CCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
49517714 ATATACATATCTCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
131 ATATACATATCTCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
49517778 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
49517843 CCATTCAGCTTTACCAGATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCAGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACC
49517908 ACATATACATATCTC
129 ACATATACATATCTC
49517923 ATACATCAAT
Statistics
Matches: 510, Mismatches: 19, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
192 137 0.27
194 326 0.64
196 47 0.09
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (194 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCTCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:49521495 original size:16 final size:16
Alignment explanation
Indices: 49521474--49521506 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
49521464 AAAAATTAAA
49521474 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
49521490 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
49521506 G
1 G
49521507 GGCGTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:49528215 original size:45 final size:45
Alignment explanation
Indices: 49528164--49528252 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
49528154 GAGTTGATCT
49528164 GATTAAAGAAACTGAAGAGAAAGTTAAAGTGATACGAAATTGTCA
1 GATTAAAGAAACTGAAGAGAAAGTTAAAGTGATACGAAATTGTCA
49528209 GATTAAAGAAACTGAAGAGAAAGTTAAAGTGATACGAAATTGTC
1 GATTAAAGAAACTGAAGAGAAAGTTAAAGTGATACGAAATTGTC
49528253 TAAAAGAGGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22
Consensus pattern (45 bp):
GATTAAAGAAACTGAAGAGAAAGTTAAAGTGATACGAAATTGTCA
Found at i:49529853 original size:22 final size:22
Alignment explanation
Indices: 49529823--49529866 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
49529813 AAATAATAAA
*
49529823 AAAAATAATCAAAATTTATTAT
1 AAAAATAATCAAAATTCATTAT
* *
49529845 AAAATTAATTAAAATTCATTAT
1 AAAAATAATCAAAATTCATTAT
49529867 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATAATCAAAATTCATTAT
Found at i:49541733 original size:28 final size:27
Alignment explanation
Indices: 49541693--49541762 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 27
49541683 ATAGTAAGTC
49541693 CGCACACTTAGTGCTTAAT-AATCAAACT
1 CGCACACTTAGTGC-T-ATCAATCAAACT
*
49541721 CGCACACTTAGTGCTATGCAATTAAACT
1 CGCACACTTAGTGCTAT-CAATCAAACT
49541749 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49541763 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 36 0.92
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATCAATCAAACT
Found at i:49545695 original size:28 final size:27
Alignment explanation
Indices: 49545658--49545751 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 27
49545648 ATGTCTACAT
*
49545658 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCA-TAGGCCCAATC
*
49545686 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCA-TAGGCCC-AATC
* *
49545715 AAATTCATATGGCCCATCGGACCCAATC
1 ACATTCATATGGCCCATAGG-CCCAATC
49545743 ACATTCATA
1 ACATTCATA
49545752 GTCATGCAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 36 0.63
29 21 0.37
ACGTcount: A:0.31, C:0.32, G:0.14, T:0.23
Consensus pattern (27 bp):
ACATTCATATGGCCCATAGGCCCAATC
Found at i:49545949 original size:16 final size:16
Alignment explanation
Indices: 49545928--49545958 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49545918 TAAACTTTAG
*
49545928 GCTTTTCGGCATTTCA
1 GCTTTTCGACATTTCA
49545944 GCTTTTCGACATTTC
1 GCTTTTCGACATTTC
49545959 GGGATTTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.26, G:0.16, T:0.45
Consensus pattern (16 bp):
GCTTTTCGACATTTCA
Found at i:49550744 original size:48 final size:48
Alignment explanation
Indices: 49550686--49551498 Score: 1322
Period size: 48 Copynumber: 16.9 Consensus size: 48
49550676 ATATACACAC
* *
49550686 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49550734 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49550781 ATCTCATTCATATTTCAATTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATA--T---TTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49550834 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49550882 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
49550930 ATCTCATATATATATCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49550978 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49551026 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
49551074 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATACACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49551122 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49551170 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
49551218 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACTACATACACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
49551266 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATACACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49551314 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49551362 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49551410 ATCTCATACAGATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49551458 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
49551499 CACATATATA
Statistics
Matches: 725, Mismatches: 34, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 29 0.04
48 648 0.89
49 1 0.00
51 1 0.00
52 16 0.02
53 30 0.04
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:49555563 original size:19 final size:20
Alignment explanation
Indices: 49555539--49555576 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
49555529 TAGTCTTAAA
*
49555539 ATAAAATAA-AAGTAAAAAC
1 ATAAAATAATAAATAAAAAC
49555558 ATAAAATAATAAATAAAAA
1 ATAAAATAATAAATAAAAA
49555577 TTTTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
ATAAAATAATAAATAAAAAC
Found at i:49558097 original size:27 final size:27
Alignment explanation
Indices: 49558065--49558155 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
49558055 GTAGATTACT
* *
49558065 AAAATACCCTTGGTTTATAAAATTATG
1 AAAATACCCTTGGTTTGTAAAATTATC
* *
49558092 AAAATACCATTGGTTTGTAAAATTACC
1 AAAATACCCTTGGTTTGTAAAATTATC
* * * *
49558119 AAAATACCCCTGATTTGTAAAAGTATT
1 AAAATACCCTTGGTTTGTAAAATTATC
49558146 AAAATACCCT
1 AAAATACCCT
49558156 CGACCTGTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATACCCTTGGTTTGTAAAATTATC
Found at i:49558164 original size:27 final size:27
Alignment explanation
Indices: 49558134--49558212 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
49558124 ACCCCTGATT
* *
49558134 TGTAAAAGTATTAAAATACCCTCGACC
1 TGTAAAAGTACTAAAATACCCTCAACC
* * *
49558161 TGTAAAATTACTGAAATACCCTCAACT
1 TGTAAAAGTACTAAAATACCCTCAACC
* * *
49558188 TGTAAAATTACCAAAGTACCCTCAA
1 TGTAAAAGTACTAAAATACCCTCAA
49558213 TTTATAGAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.27
Consensus pattern (27 bp):
TGTAAAAGTACTAAAATACCCTCAACC
Found at i:49558277 original size:27 final size:27
Alignment explanation
Indices: 49558247--49558414 Score: 180
Period size: 27 Copynumber: 6.3 Consensus size: 27
49558237 CGATTTACAA
* *
49558247 AATTATCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
49558274 AATTATTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49558301 GATTACCGAAATACCCCTGT-GGGATAG
1 AATTACCGAAATACCCCTGTAGGG-TAG
** *
49558328 AATTATTGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49558355 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49558382 AATTACCGAGATACCCTTGT-GGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
49558407 ATATTACC
1 A-ATTACC
49558415 ATTTTGCCCC
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 14 0.12
27 100 0.85
28 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:49558316 original size:81 final size:82
Alignment explanation
Indices: 49558243--49558404 Score: 202
Period size: 81 Copynumber: 2.0 Consensus size: 82
49558233 CCCTCGATTT
* ** * * *
49558243 ACAAAATTATCGAAATACCCCTGTAGGATAGAATTATTAAAATACCCTTGTAGGGTAGGATTACC
1 ACAAAATTATCGAAATACCACTGTAGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
49558308 GAAATACCC-CTGTGGG
66 GAAATACCCTCTGTGGG
* * * * *
49558324 ATAGAATTATTGAAATACCACTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACC
1 ACAAAATTATCGAAATACCACTGTAGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
*
49558389 GAGATACCCT-TGTGGG
66 GAAATACCCTCTGTGGG
49558405 TAATATTACC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (82 bp):
ACAAAATTATCGAAATACCACTGTAGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
GAAATACCCTCTGTGGG
Found at i:49558396 original size:54 final size:54
Alignment explanation
Indices: 49558247--49558414 Score: 209
Period size: 54 Copynumber: 3.1 Consensus size: 54
49558237 CGATTTACAA
* * *
49558247 AATTATCGAAATACCCCTGTAGGATAGAATTATTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAG
*
49558301 GATTACCGAAATACCCCTGT-GGGATAGAATTATTGAAATACCAC-TGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGG-TAGAATTATTGAAATACC-CTTGTAGGGTAG
* ** *
49558355 AATTACCGAAATACCCCTATAGGGTAGAATTACCGAGATACCCTTGT-GGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAG
49558407 ATATTACC
1 A-ATTACC
49558415 ATTTTGCCCC
Statistics
Matches: 100, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
52 1 0.01
53 14 0.14
54 81 0.81
55 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAG
Found at i:49562063 original size:35 final size:35
Alignment explanation
Indices: 49562024--49562093 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
49562014 ATGAATCGTT
49562024 CTTGAAACTAACTATTATCACGATGAAGGCAAGTG
1 CTTGAAACTAACTATTATCACGATGAAGGCAAGTG
49562059 CTTGAAACTAACTATTATCACGATGAAGGCAAGTG
1 CTTGAAACTAACTATTATCACGATGAAGGCAAGTG
49562094 TACCTATCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (35 bp):
CTTGAAACTAACTATTATCACGATGAAGGCAAGTG
Found at i:49564278 original size:17 final size:18
Alignment explanation
Indices: 49564256--49564289 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49564246 CACATTGGAG
49564256 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
49564273 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
49564290 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:49565590 original size:29 final size:27
Alignment explanation
Indices: 49565542--49565615 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 27
49565532 TATGGTCCAC
49565542 TAGGCCCAATCTA-ATTCATATAACCCA
1 TAGGCCCAATC-ACATTCATATAACCCA
**
49565569 TTAGGCCCAAATCACATTCATATGGCCCA
1 -TAGGCCC-AATCACATTCATATAACCCA
49565598 TAGGCCCCAATCACATTC
1 TAGG-CCCAATCACATTC
49565616 CTAGTCATGC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.24
Consensus pattern (27 bp):
TAGGCCCAATCACATTCATATAACCCA
Found at i:49576316 original size:71 final size:71
Alignment explanation
Indices: 49576232--49576376 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
49576222 ATGAAGTTAG
49576232 GCCATTTTCATATGGCTTAAATTATACAGAACCAATATTCTTTATTTCAAACTATAATCTAGCCT
1 GCCATTTTCATATGGCTTAAATTATACAGAACCAATATTCTTTATTTCAAACTATAATCTAGCCT
49576297 ATACAA
66 ATACAA
49576303 GCCATTTTCATATGGCTTAAATTATACAGAACCAATATTCTTTATTTCAAACTATAATCTAGCCT
1 GCCATTTTCATATGGCTTAAATTATACAGAACCAATATTCTTTATTTCAAACTATAATCTAGCCT
49576368 ATACAA
66 ATACAA
49576374 GCC
1 GCC
49576377 GTAGATTCAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (71 bp):
GCCATTTTCATATGGCTTAAATTATACAGAACCAATATTCTTTATTTCAAACTATAATCTAGCCT
ATACAA
Found at i:49579281 original size:36 final size:35
Alignment explanation
Indices: 49579241--49579308 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
49579231 GAAATACCCC
* *
49579241 TGTAT-TATGTATGACTATTTTTTAGCATGACATCTT
1 TGTATATACGTATGA-TATTATTT-GCATGACATCTT
*
49579277 TGTATATACGTATGATATTATTTGCATTACAT
1 TGTATATACGTATGATATTATTTGCATGACAT
49579309 GGGGTGGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 8 0.29
36 12 0.43
37 8 0.29
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (35 bp):
TGTATATACGTATGATATTATTTGCATGACATCTT
Found at i:49584836 original size:38 final size:40
Alignment explanation
Indices: 49584788--49584880 Score: 104
Period size: 38 Copynumber: 2.4 Consensus size: 40
49584778 TTCCAGCACT
* *
49584788 TAGCCTGCGGACCTCAAGT-TC-GAATATATTTCGAGCATA
1 TAGCCTGCGGACCTCAA-TATCTGAATATATTTCCAACATA
* * *
49584827 TAG-CTGCGGATCTC-ATATCTGGATATTTTTCCAACATA
1 TAGCCTGCGGACCTCAATATCTGAATATATTTCCAACATA
49584865 TAGCCTGCGGACCTCA
1 TAGCCTGCGGACCTCA
49584881 TGTCCGGATA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
36 1 0.02
37 3 0.07
38 27 0.61
39 13 0.30
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (40 bp):
TAGCCTGCGGACCTCAATATCTGAATATATTTCCAACATA
Found at i:49584895 original size:38 final size:39
Alignment explanation
Indices: 49584768--49584894 Score: 150
Period size: 39 Copynumber: 3.3 Consensus size: 39
49584758 GGTCTTTAAC
*
49584768 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCA-TATAGCCTGCGGACCTCATGT
* * * * * *
49584807 TCGAATATATTTCGAGCATATAG-CTGCGGATCTCATAT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
49584845 CTGGATATTTTTCCAACATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
49584884 CCGGATATTTT
1 CCGGATATTTT
49584895 CAATCTCATA
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
38 30 0.43
39 40 0.57
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:49593068 original size:37 final size:37
Alignment explanation
Indices: 49593018--49593097 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
49593008 CTTATTACGA
* *
49593018 AGTCTTACCCGGACATAATCTCC-ACACGAAGTTATCG
1 AGTCTTACCCGGACAAAAT-TCCGACACGAAGTCATCG
*
49593055 AGTCTTACCCGGACAAAATTCCGACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCGACACGAAGTCATCG
*
49593092 GGTCTT
1 AGTCTT
49593098 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 3 0.08
37 35 0.92
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCGACACGAAGTCATCG
Found at i:49593294 original size:47 final size:47
Alignment explanation
Indices: 49593216--49593534 Score: 505
Period size: 47 Copynumber: 6.7 Consensus size: 47
49593206 CCCTTCGGGA
* * * * * * *
49593216 CTTATCACATTTATACATTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49593263 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49593310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49593357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49593404 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49593453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49593500 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
49593535 AGAATCCTAA
Statistics
Matches: 256, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 208 0.81
49 47 0.18
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49593445 original size:96 final size:96
Alignment explanation
Indices: 49593216--49593513 Score: 496
Period size: 96 Copynumber: 3.1 Consensus size: 96
49593206 CCCTTCGGGA
* * * * * * * *
49593216 CTTATCACAT-T-TATACATTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49593279 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
49593310 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49593373 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
49593404 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49593469 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
49593500 CTTATCACATATAT
1 CTTATCACATATAT
49593514 GCATGTTCAC
Statistics
Matches: 192, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.01
94 91 0.47
96 100 0.52
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49593472 original size:143 final size:140
Alignment explanation
Indices: 49593216--49593534 Score: 512
Period size: 143 Copynumber: 2.2 Consensus size: 140
49593206 CCCTTCGGGA
* * * * *
49593216 CTTATCACATTTATACATTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACA-TTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
49593281 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
49593346 GGCCATTAGGC
130 GGCCATTAGGC
* * *
49593357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACA-TTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
49593422 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
49593487 TCGGCCATTAGGC
128 TCGGCCATTAGGC
*
49593500 CTTATCACATATATGCATGTTCACATCCATCACAT
1 CTTATCACATATATACAT-TTCACATCCATCACAT
49593535 AGAATCCTAA
Statistics
Matches: 164, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 46 0.28
142 1 0.01
143 117 0.71
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACATATATACATTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:49597231 original size:40 final size:40
Alignment explanation
Indices: 49597187--49597556 Score: 537
Period size: 40 Copynumber: 9.2 Consensus size: 40
49597177 TCTTCGAGGT
* * * **
49597187 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
49597227 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
49597267 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
49597307 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* * * *
49597347 TTAGCCCGAATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* *
49597387 TTAGTCCGGATATATCACTAGCACGAATGATCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
49597427 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* * *
49597467 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* * * *
49597507 TTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGAC
1 TTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCCTCGGGAC
49597547 TTAGCCCGGA
1 TTAGCCCGGA
49597557 CATCATTCAA
Statistics
Matches: 300, Mismatches: 28, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
40 286 0.95
41 8 0.03
42 6 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:49597356 original size:23 final size:23
Alignment explanation
Indices: 49597245--49597357 Score: 61
Period size: 23 Copynumber: 5.4 Consensus size: 23
49597235 GATACATCAC
49597245 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
* * * *
49597268 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCCTCGGGACT
49597285 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
* * * *
49597308 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCCTCGGGACT
49597325 TAGCACGAATGCTCCTCGGGACT
1 TAGCACGAATGCTCCTCGGGACT
*
49597348 TAGCCCGAAT
1 TAGCACGAAT
49597358 ACATCACTAG
Statistics
Matches: 61, Mismatches: 17, Indels: 24
0.60 0.17 0.24
Matches are distributed among these distances:
17 16 0.26
18 6 0.10
19 4 0.07
21 4 0.07
22 6 0.10
23 25 0.41
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (23 bp):
TAGCACGAATGCTCCTCGGGACT
Found at i:49597400 original size:120 final size:120
Alignment explanation
Indices: 49597187--49597556 Score: 591
Period size: 120 Copynumber: 3.1 Consensus size: 120
49597177 TCTTCGAGGT
* * * **
49597187 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
* * *
49597252 AATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
66 AATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
49597307 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGAATACATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
*
49597372 AATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGATCCTCGGGAC
66 AATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
49597427 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
* * *
49597492 AATGCTCTTCGGAACTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGAC
66 AATGCTCTTCGGAACTTAGTCCGGATAT-ATCAC-TAGCACGAATGCTCCTCGGGAC
49597547 TTAGCCCGGA
1 TTAGCCCGGA
49597557 CATCATTCAA
Statistics
Matches: 233, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
120 220 0.94
121 7 0.03
122 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (120 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
AATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:49597904 original size:29 final size:29
Alignment explanation
Indices: 49597864--49597942 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
49597854 CTTAATAATC
*
49597864 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
**
49597894 AACTTGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
49597923 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
49597943 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:49597985 original size:43 final size:43
Alignment explanation
Indices: 49597924--49598026 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
49597914 TGCATTTCAA
49597924 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
49597967 GCCCGCACAGTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
49598010 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
49598027 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:49599953 original size:37 final size:37
Alignment explanation
Indices: 49599892--49599970 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
49599882 TTATTACGAA
* * *
49599892 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
49599929 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
49599966 GTCTT
1 GTCTT
49599971 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:49600167 original size:47 final size:47
Alignment explanation
Indices: 49600089--49600360 Score: 420
Period size: 47 Copynumber: 5.7 Consensus size: 47
49600079 CCCTTCGGGA
* * * * * *
49600089 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49600136 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49600183 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49600230 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49600279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49600326 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
49600361 AGAATCCTAA
Statistics
Matches: 210, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 162 0.77
49 47 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49600286 original size:96 final size:96
Alignment explanation
Indices: 49600089--49600339 Score: 416
Period size: 96 Copynumber: 2.6 Consensus size: 96
49600079 CCCTTCGGGA
* * * * * * * *
49600089 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
49600152 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
49600183 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
49600248 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
49600279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
49600340 GCATGTTCAC
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 47 0.32
96 100 0.68
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49600358 original size:143 final size:141
Alignment explanation
Indices: 49600089--49600360 Score: 429
Period size: 143 Copynumber: 1.9 Consensus size: 141
49600079 CCCTTCGGGA
* * * *
49600089 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
49600154 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
49600219 GGCCATTAGGC
131 GGCCATTAGGC
* * *
49600230 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
49600295 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA-TGTTCACATCCATCAC
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATCCATCAC
49600359 AT
128 AT
49600361 AGAATCCTAA
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
141 10 0.08
142 2 0.02
143 107 0.90
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
GGCCATTAGGC
Found at i:49604064 original size:39 final size:38
Alignment explanation
Indices: 49604009--49604129 Score: 188
Period size: 39 Copynumber: 3.1 Consensus size: 38
49603999 ACCCGAATAT
** *
49604009 TTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATA
1 TTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
*
49604047 TATTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATA
1 T-TTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
49604086 TTTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
1 -TTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
49604125 TTTTC
1 TTTTC
49604130 AATCTCATAC
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
38 6 0.08
39 69 0.91
40 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (38 bp):
TTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATA
Found at i:49613435 original size:12 final size:12
Alignment explanation
Indices: 49613418--49613442 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49613408 AACTCTGAAT
49613418 TCTAAATCACAC
1 TCTAAATCACAC
49613430 TCTAAATCACAC
1 TCTAAATCACAC
49613442 T
1 T
49613443 AAGCTCGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (12 bp):
TCTAAATCACAC
Found at i:49614859 original size:29 final size:29
Alignment explanation
Indices: 49614798--49614916 Score: 159
Period size: 29 Copynumber: 4.1 Consensus size: 29
49614788 ACATACATGT
* * **
49614798 ATATAGCCCACTAGGCCC-AATCTTATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
49614826 ATATGGCCCATTAGGCCCAAATCAAATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
49614855 GTATGGCCCATTAGACCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
49614884 ATACGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
49614913 ATAT
1 ATAT
49614917 ACATGCTTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 16 0.20
29 63 0.80
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:49617444 original size:27 final size:27
Alignment explanation
Indices: 49617406--49617775 Score: 306
Period size: 27 Copynumber: 13.7 Consensus size: 27
49617396 TTTAGTTTAC
* *
49617406 AAAATTACTAAAATGCCCTCAATTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
*
49617433 AAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTC-GATTTGT
* *
49617460 AAAATTACCAAAATACCCT-TAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTGT
* *
49617487 GAAATTACCAAAATATCCCT-GATTTGT
1 AAAATTACTAAAATA-CCCTCGATTTGT
** * *
49617514 GCAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
*
49617541 AAAATTACCAAAATAACCCT-GATTTGT
1 AAAATTACTAAAAT-ACCCTCGATTTGT
* * *
49617568 GAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* * * **
49617595 AAAATTAAC-AAAATAACCTTGGTTTAC
1 AAAATT-ACTAAAATACCCTCGATTTGT
* *
49617622 AAAATTACCAAAATATCCCT-AATTTGT
1 AAAATTACTAAAATA-CCCTCGATTTGT
* *
49617649 GAAATTA-TCGAAATACCCTC-AGTTTGT
1 AAAATTACT-AAAATACCCTCGA-TTTGT
*
49617676 AAAATTACTGAAATACCCTCGATTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* *
49617703 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTGT
* * * **
49617730 AAAAATTACCAAAGTACCCCCGATTTAC
1 -AAAATTACTAAAATACCCTCGATTTGT
*
49617758 AAAATTATTAAAATACCC
1 AAAATTACTAAAATACCC
49617776 CTATAGGGTA
Statistics
Matches: 278, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
26 17 0.06
27 224 0.81
28 37 0.13
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTGT
Found at i:49617762 original size:55 final size:53
Alignment explanation
Indices: 49617650--49617775 Score: 130
Period size: 55 Copynumber: 2.3 Consensus size: 53
49617640 CTAATTTGTG
* * * **
49617650 AAATTATCGAAATACCCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTAT-GAAATACCCTCAGCTTGTAAAATTACTCAAATACCCCCGATTTACA
49617704 AAATTACTGAAATACCCTC-GACTTGTAAAAATTAC-CAAAGTACCCCCGATTTACA
1 AAATTA-TGAAATACCCTCAG-CTTGT-AAAATTACTCAAA-TACCCCCGATTTACA
*
49617759 AAATTATTAAAATACCC
1 AAATTA-TGAAATACCC
49617776 CTATAGGGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
53 1 0.02
54 24 0.39
55 36 0.59
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
AAATTATGAAATACCCTCAGCTTGTAAAATTACTCAAATACCCCCGATTTACA
Found at i:49617846 original size:136 final size:135
Alignment explanation
Indices: 49617406--49617829 Score: 317
Period size: 135 Copynumber: 3.1 Consensus size: 135
49617396 TTTAGTTTAC
* * * ** * ** *
49617406 AAAATTACTAAAATGCCCTCAATTTGTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACCA
1 AAAATTACTGAAATACCCTCGATGGGTAAAATTACTGAAATACCCTC-GACTTGTAAAATTAACA
** *** * * ** *
49617470 AAAT-ACCCTTAGTTTGTGAAATTACCAAAATATCCCTGATTTGTGCAATTA-CTGAAATACCCT
65 AAATAACCCCGA-TTTACAAAATTACCAAAATACCCCTAATGGGTGAAATTATC-GAAATACCCT
* *
49617533 CGACT-TGT
128 C-AGTGCGT
** ** *
49617541 AAAATTACCAAAATAACCCT-GATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTAACA
1 AAAATTACTGAAAT-ACCCTCGATGGGTAAAATTACTGAAATACCCTCGACTTGTAAAATTAACA
** * * **
49617605 AAATAACCTTGGTTTACAAAATTACCAAAATATCCCTAATTTGTGAAATTATCGAAATACCCTCA
65 AAATAACCCCGATTTACAAAATTACCAAAATACCCCTAATGGGTGAAATTATCGAAATACCCTCA
**
49617670 GTTTGT
130 GTGCGT
** *
49617676 AAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACCA
1 AAAATTACTGAAATACCCTCGATGGGTAAAATTACTGAAATACCCTCGACTTGT-AAAATTAACA
* * **
49617741 AAGTACCCCCGATTTACAAAATTATTAAAATACCCCT-ATAGGGT-AGAATTATCGAAATACCC-
65 AAATAACCCCGATTTACAAAATTACCAAAATACCCCTAAT-GGGTGA-AATTATCGAAATACCCT
49617803 CTA-TAGCGT
128 C-AGT-GCGT
*
49617812 AGAATTACTGAAATACCC
1 AAAATTACTGAAATACCC
49617830 CTGTAGGGTA
Statistics
Matches: 244, Mismatches: 34, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
134 7 0.03
135 151 0.62
136 86 0.35
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (135 bp):
AAAATTACTGAAATACCCTCGATGGGTAAAATTACTGAAATACCCTCGACTTGTAAAATTAACAA
AATAACCCCGATTTACAAAATTACCAAAATACCCCTAATGGGTGAAATTATCGAAATACCCTCAG
TGCGT
Found at i:49617865 original size:27 final size:27
Alignment explanation
Indices: 49617768--49617874 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 27
49617758 AAAATTATTA
* *
49617768 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
49617795 AAATACCCCTATAGCGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
49617822 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
49617849 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
49617875 ATTTTGCCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:49618113 original size:25 final size:25
Alignment explanation
Indices: 49618079--49618148 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
49618069 AGGAAGTGCT
*
49618079 AAAAGGGCTTTGCCCCAGTTT-TCCG
1 AAAAGGGCTTTGCCCCAGTTTAT-CA
*
49618104 AAAAGGGCTTTGGCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
49618129 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
49618149 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 40 0.98
26 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:49618161 original size:24 final size:23
Alignment explanation
Indices: 49618078--49618175 Score: 90
Period size: 25 Copynumber: 4.0 Consensus size: 23
49618068 GAGGAAGTGC
49618078 TAAAAGGGCTTTGCCCCAGTT-T
1 TAAAAGGGCTTTGCCCCAGTTAT
*
49618100 TCCGAAAAGGGCTTTGGCCCAGTTTAT
1 T---AAAAGGGCTTTGCCCCAG-TTAT
*
49618127 CAAAAAGGGCTTTGCCCCAGTTAT
1 -TAAAAGGGCTTTGCCCCAGTTAT
**
49618151 TAAAAGAGGCTAGGCCTCCAGTTAT
1 TAAAAG-GGCTTTGCC-CCAGTTAT
49618176 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
22 1 0.02
23 5 0.08
24 11 0.18
25 42 0.68
26 2 0.03
27 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TAAAAGGGCTTTGCCCCAGTTAT
Found at i:49622634 original size:40 final size:40
Alignment explanation
Indices: 49622411--49622620 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
49622401 TCCTCGTTCA
* * * * *
49622411 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49622450 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49622490 AATACCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49622530 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49622570 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49622610 AAGGCCTTCGG
1 AATGCCTTCGG
49622621 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 34 0.22
40 124 0.78
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49622657 original size:80 final size:80
Alignment explanation
Indices: 49622414--49622673 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
49622404 TCGTTCAAAT
* * * * * * * *
49622414 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
49622478 ACAACTCGCACGAATA
66 ATAACTAGCACGAA-A
* * *
49622494 -CCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
49622558 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* **
49622573 GCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
49622637 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
49622653 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
49622674 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
79 33 0.21
80 118 0.76
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:49622657 original size:120 final size:118
Alignment explanation
Indices: 49622409--49622673 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 118
49622399 GCTCCTCGTT
* * *
49622409 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
49622474 TTTAACAACTCGCACGAATACCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGACCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
49622528 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
* * * ** * **
49622593 ATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGACCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
49622649 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
49622674 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
119 35 0.29
120 81 0.67
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGACCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:49630587 original size:40 final size:40
Alignment explanation
Indices: 49630364--49630573 Score: 323
Period size: 40 Copynumber: 5.3 Consensus size: 40
49630354 TCCTCGTTCA
* * * * *
49630364 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49630403 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49630443 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49630483 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49630523 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49630563 AAGGCCTTCGG
1 AATGCCTTCGG
49630574 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 126 0.79
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49630610 original size:80 final size:80
Alignment explanation
Indices: 49630367--49630626 Score: 274
Period size: 80 Copynumber: 3.3 Consensus size: 80
49630357 TCGTTCAAAT
* * * * * * * *
49630367 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
49630431 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
49630446 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
49630511 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* **
49630526 GCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
49630590 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
49630606 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
49630627 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 34 0.21
80 120 0.75
81 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:49630610 original size:120 final size:118
Alignment explanation
Indices: 49630362--49630626 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 118
49630352 GCTCCTCGTT
* * *
49630362 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
49630427 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
49630481 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
* * ** * **
49630546 ATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
49630602 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
49630627 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 35 0.29
120 82 0.67
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:49649265 original size:40 final size:40
Alignment explanation
Indices: 49649173--49649342 Score: 218
Period size: 40 Copynumber: 4.3 Consensus size: 40
49649163 TCCTCGTTCA
* * * *
49649173 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
49649212 AATACCTTCGGGACGTAACCCGGATTTA-TCAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGT-AACTCGCACG
* *
49649252 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
49649292 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
49649332 AAGGCCTTCGG
1 AATGCCTTCGG
49649343 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.28
40 81 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:49675299 original size:56 final size:54
Alignment explanation
Indices: 49675157--49675299 Score: 130
Period size: 56 Copynumber: 2.5 Consensus size: 54
49675147 CCACATGTTG
*
49675157 TAAAAAGGATTTAGCCTGGACGAGTAATCCTAATATAAGCCGCTTGAGCCAATGC
1 TAAAAAGGATTTAGCCTGGACG-GTAATCCAAATATAAGCCGCTTGAGCCAATGC
** * * *
49675212 TATAGATTGGATTTAGCCCGGACGGGCAATCCAAAT-TAAG-CTCTTAGAG-CATATGTCC
1 TA-A-AAAGGATTTAGCCTGGAC-GGTAATCCAAATATAAGCCGCTT-GAGCCA-ATG--C
49675270 TAAAAAGGATTTAGCCTGGACTGGTAATCC
1 TAAAAAGGATTTAGCCTGGAC-GGTAATCC
49675300 TATAACATAA
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
55 8 0.11
56 33 0.47
57 25 0.36
58 4 0.06
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (54 bp):
TAAAAAGGATTTAGCCTGGACGGTAATCCAAATATAAGCCGCTTGAGCCAATGC
Found at i:49678370 original size:29 final size:30
Alignment explanation
Indices: 49678338--49678397 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49678328 TTCCGGAGCC
49678338 TAGGGG-AAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
49678367 TAGGGGCAAAATTGTAATTATTCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
49678397 T
1 T
49678398 GAGTTAAGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:49679175 original size:68 final size:68
Alignment explanation
Indices: 49679103--49679288 Score: 170
Period size: 67 Copynumber: 2.8 Consensus size: 68
49679093 CATCATGTGT
* *
49679103 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TA-TATGTAGCTAGGTCGCATGGGTGATACTAGTGAAGGACACCA
49679166 TGTAG
64 TGTAG
* ** * * *
49679171 ACAAGAGAGC--CACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGGGTGATACTA-GTGAAGGACACCAT
49679234 GTAG
65 GTAG
* * * * *
49679238 ACAAGAGAGCTAC--GAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTG
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGGGTGATACT-AGTG
49679289 TTCACCATGT
Statistics
Matches: 98, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
64 26 0.27
65 2 0.02
66 29 0.30
67 30 0.31
68 10 0.10
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGGGTGATACTAGTGAAGGACACCATG
TAG
Found at i:49679207 original size:64 final size:64
Alignment explanation
Indices: 49679126--49679311 Score: 207
Period size: 67 Copynumber: 2.9 Consensus size: 64
49679116 AAGACATTAT
* *
49679126 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGGGATA
1 TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
* * * * *
49679190 TATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCCACGAGA
49679255 TA
63 TA
* * * *
49679257 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCC
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCC
49679312 GAACTATATG
Statistics
Matches: 101, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 27 0.27
66 22 0.22
67 32 0.32
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
Found at i:49692153 original size:44 final size:41
Alignment explanation
Indices: 49692105--49692203 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 41
49692095 AAATGATTCT
**
49692105 GCACACTTAGTGCCATCTCAACTAGCCGAAACTAAGTTGGTATC
1 GCACACTTAGTGCCAT-TCAA-TAGCCGAAACT-AGTTGAAATC
* * *
49692149 GCACACTTAGTGCC-TTTAATAGCCGAAGCTAGTTTAAATC
1 GCACACTTAGTGCCATTCAATAGCCGAAACTAGTTGAAATC
*
49692189 GTACACTTAGTGCCA
1 GCACACTTAGTGCCA
49692204 ATGCTTTCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
40 20 0.42
41 10 0.21
42 3 0.06
43 1 0.02
44 14 0.29
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (41 bp):
GCACACTTAGTGCCATTCAATAGCCGAAACTAGTTGAAATC
Found at i:49703720 original size:39 final size:40
Alignment explanation
Indices: 49703625--49703847 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
49703615 TTGAATGCTG
*
49703625 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
49703663 ATTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
49703704 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
49703743 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
49703782 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
49703821 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
49703848 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:49703819 original size:79 final size:81
Alignment explanation
Indices: 49703625--49703847 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
49703615 TTGAATGCTG
* * * * *
49703625 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATTCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
49703687 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
49703704 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
49703765 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * *
49703782 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
49703846 TG
66 TG
49703848 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.37
79 54 0.43
80 24 0.19
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:49703869 original size:79 final size:79
Alignment explanation
Indices: 49703677--49703880 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 79
49703667 GGACTAAGAT
** * *
49703677 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
49703740 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
49703755 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
49703819 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
49703835 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
49703881 TACGTGATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.34
79 47 0.43
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:49708989 original size:11 final size:11
Alignment explanation
Indices: 49708973--49709010 Score: 51
Period size: 10 Copynumber: 3.4 Consensus size: 11
49708963 AAATTACATA
49708973 ATAAAAATATT
1 ATAAAAATATT
49708984 ATAAAAA-ATT
1 ATAAAAATATT
49708994 ATAAAACATATAT
1 ATAAAA-ATAT-T
49709007 ATAA
1 ATAA
49709011 TGAGACAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.38
11 8 0.33
12 2 0.08
13 5 0.21
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAAAAATATT
Found at i:49714021 original size:28 final size:28
Alignment explanation
Indices: 49713960--49714021 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
49713950 GCTCAAACAG
* * *
49713960 GGGAATATGACAGTGTGTGAGTATGAAT
1 GGGAATATGACAGTGTCTGACTATGAAC
* *
49713988 GAGAATATGATAGTGTCTGACTATGAAC
1 GGGAATATGACAGTGTCTGACTATGAAC
49714016 GGGAAT
1 GGGAAT
49714022 TTGTTAGATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.32, T:0.27
Consensus pattern (28 bp):
GGGAATATGACAGTGTCTGACTATGAAC
Found at i:49715714 original size:64 final size:64
Alignment explanation
Indices: 49715636--49715820 Score: 187
Period size: 67 Copynumber: 2.9 Consensus size: 64
49715626 AAGACATTAT
* * *
49715636 TATGTAGCTAGGTCGTATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGGGATA
1 TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
* * * * * *
49715700 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCCACGAGA
49715765 TA
63 TA
* * * *
49715767 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
49715821 TGAAATATAT
Statistics
Matches: 98, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
Found at i:49716907 original size:35 final size:35
Alignment explanation
Indices: 49716868--49716940 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
49716858 ACACATTCTT
49716868 TATTCTCGTCAGATCAATCTCAAATAAATAATATA
1 TATTCTCGTCAGATCAATCTCAAATAAATAATATA
*
49716903 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCAAATAAATAATATA
49716938 TAT
1 TAT
49716941 CACATACCTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCAAATAAATAATATA
Found at i:49718903 original size:8 final size:8
Alignment explanation
Indices: 49718884--49718913 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
49718874 CCCCTATATT
49718884 TTACCAAAA
1 TTACC-AAA
49718893 TTACCAAA
1 TTACCAAA
49718901 TTACCAAA
1 TTACCAAA
49718909 TTACC
1 TTACC
49718914 CCTAGGCTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (8 bp):
TTACCAAA
Found at i:49735866 original size:55 final size:55
Alignment explanation
Indices: 49735769--49735873 Score: 129
Period size: 55 Copynumber: 1.9 Consensus size: 55
49735759 CGAGCCTGCC
* * **
49735769 AAAACAACACGGGCGTGCAACACGCCCGTGTGGAGGAACCGTGGACGAACCTATT
1 AAAACAACACAGGCGTGCAACACGCCCGTGTCGAACAACCGTGGACGAACCTATT
* * * * *
49735824 AAAACAGCACAGGCGTGCGACACGCCCGTGTCTAACACCCGTGGTCGAAC
1 AAAACAACACAGGCGTGCAACACGCCCGTGTCGAACAACCGTGGACGAAC
49735874 TTGTGAAATT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 41 1.00
ACGTcount: A:0.30, C:0.30, G:0.28, T:0.12
Consensus pattern (55 bp):
AAAACAACACAGGCGTGCAACACGCCCGTGTCGAACAACCGTGGACGAACCTATT
Found at i:49737800 original size:12 final size:13
Alignment explanation
Indices: 49737779--49737807 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
49737769 TTCAAACCAC
49737779 TTTTATTTTTTAT
1 TTTTATTTTTTAT
49737792 TTTTA-TTTTTAT
1 TTTTATTTTTTAT
49737804 TTTT
1 TTTT
49737808 TAGTAGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:49746032 original size:13 final size:13
Alignment explanation
Indices: 49746014--49746042 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
49746004 TTCTCTTTGC
49746014 TTAGTTAATTAGT
1 TTAGTTAATTAGT
49746027 TTAGTTAATTAGT
1 TTAGTTAATTAGT
49746040 TTA
1 TTA
49746043 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:49749806 original size:126 final size:126
Alignment explanation
Indices: 49749581--49749832 Score: 495
Period size: 126 Copynumber: 2.0 Consensus size: 126
49749571 TAGTTTAATC
49749581 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
1 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
*
49749646 CTGAAAATTAGAAATTTATGGTATAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
66 CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
49749707 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
1 TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
49749772 CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
66 CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
49749833 CTTACTAAGC
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (126 bp):
TCTTTATTTAGGGGATTAATCTGAAAAGATATCAATGTATGAAATTTGGGTCATGGATGAATATG
CTGAAAATTAGAAATTTATGGTAGAAAATAAGACCGGTAGGTTTGTTTTTCGTTATACGAA
Found at i:49750982 original size:10 final size:10
Alignment explanation
Indices: 49750967--49751009 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
49750957 CAATTCACTA
49750967 ACCAAATCAT
1 ACCAAATCAT
*
49750977 ACCAAATCTAA
1 ACCAAATC-AT
49750988 ACCAAAATCAT
1 ACC-AAATCAT
*
49750999 ACCAAAGCAT
1 ACCAAATCAT
49751009 A
1 A
49751010 TGTTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:49751689 original size:12 final size:12
Alignment explanation
Indices: 49751668--49751702 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
49751658 CATTCGTTTC
*
49751668 TTGAAATGTTCG
1 TTGAACTGTTCG
49751680 TTGAACTGTTCG
1 TTGAACTGTTCG
49751692 TTGAACTGTTC
1 TTGAACTGTTC
49751703 AAAATCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (12 bp):
TTGAACTGTTCG
Found at i:49751854 original size:41 final size:44
Alignment explanation
Indices: 49751796--49751902 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 44
49751786 GATGCCATTG
49751796 TCCCAGATAG-GGTCTTACAC-AAAATCA-AATACAATACCAACA
1 TCCCAGA-AGTGGTCTTACACGAAAATCATAATACAATACCAACA
* * * *
49751838 -CCCAGAAGTGGTCTTACACGTAAATCATAATTCGATGCCAACA
1 TCCCAGAAGTGGTCTTACACGAAAATCATAATACAATACCAACA
* *
49751881 TTCCAGACGTGGTCTTACACGA
1 TCCCAGAAGTGGTCTTACACGA
49751903 TAACACATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
40 2 0.04
41 16 0.30
42 6 0.11
43 12 0.22
44 18 0.33
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (44 bp):
TCCCAGAAGTGGTCTTACACGAAAATCATAATACAATACCAACA
Found at i:49751887 original size:85 final size:85
Alignment explanation
Indices: 49751740--49751900 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 85
49751730 AAAAAGCTCG
* * * * ***
49751740 TACAATGCCAACGTCCCAGAAGTTGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGATA
1 TACAATACCAACGACCCAGAAGTGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGA-A
49751805 G-GGTCTTACACAAAATCAAA
65 GTGGTCTTACACAAAATCAAA
*
49751825 TACAATACCAAC-ACCCAGAAGTGGTCTTACACGTAAATCATAAT-TCGATGCCAACATTCCAGA
1 TACAATACCAACGACCCAGAAGTGGTCTTACACGT-AATCA-AATATCGATGCCAACATCCCAGA
*
49751888 CGTGGTCTTACAC
64 AGTGGTCTTACAC
49751901 GATAACACAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
84 20 0.31
85 41 0.64
86 3 0.05
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (85 bp):
TACAATACCAACGACCCAGAAGTGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGAAG
TGGTCTTACACAAAATCAAA
Found at i:49755628 original size:30 final size:31
Alignment explanation
Indices: 49755552--49755634 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
49755542 TCAGTCTCGA
49755552 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
49755582 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
49755613 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
49755635 ACTGTAAGCG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:49755875 original size:25 final size:26
Alignment explanation
Indices: 49755847--49755899 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
49755837 GCCTAGCCTC
49755847 TTTTAAT-AACTGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
* *
49755872 TTTTGATAAATTGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
49755898 TT
1 TT
49755900 CGGTAAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (26 bp):
TTTTAATAAACTGGGGCAAAGCCCTT
Done.