Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 151 of 373
Found at i:50082428 original size:28 final size:25
Alignment explanation
Indices: 50082351--50082464 Score: 119
Period size: 24 Copynumber: 4.4 Consensus size: 25
50082341 TGGAAATTTC
50082351 TCACTTAGCACAATGCCATTGACTTATT
1 TCACTTAG--CAATGCCA-TGACTTATT
50082379 TCACTTAG--ATGCCATGTACTTATT
1 TCACTTAGCAATGCCATG-ACTTATT
50082403 TCACTTAGCACATTGCCATAGACTTATT
1 TCACTTAGCA-A-TGCCAT-GACTTATT
*
50082431 TCACTTAG--ATGCCATGGTCTTATT
1 TCACTTAGCAATGCCAT-GACTTATT
50082455 TCACTTAGCA
1 TCACTTAGCA
50082465 TAATGTCATT
Statistics
Matches: 76, Mismatches: 2, Indels: 18
0.79 0.02 0.19
Matches are distributed among these distances:
23 2 0.03
24 42 0.55
25 1 0.01
27 1 0.01
28 29 0.38
29 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (25 bp):
TCACTTAGCAATGCCATGACTTATT
Found at i:50089120 original size:39 final size:39
Alignment explanation
Indices: 50088857--50089109 Score: 391
Period size: 39 Copynumber: 6.5 Consensus size: 39
50088847 CAAAGCATGA
50088857 GGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTC
1 GGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTC
* * * *
50088898 TGGACTTAGCCCGGATATAACACC-GTACGAATGCCTTT
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
**
50088936 GGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
50088975 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
*
50089014 AGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
* * *
50089053 AGGACTTAACCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
50089092 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
50089110 TTTTCCAGCA
Statistics
Matches: 196, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 34 0.17
39 156 0.80
40 2 0.01
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
Found at i:50089145 original size:39 final size:39
Alignment explanation
Indices: 50089102--50089233 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
50089092 GGGACTTAGC
* * *
50089102 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
*
50089141 CCGGATATATTTCCAGCATAAAGCCTACGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
50089180 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
50089219 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
50089234 ATACCATGCA
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 85 0.99
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:50089145 original size:78 final size:79
Alignment explanation
Indices: 50088857--50089226 Score: 355
Period size: 78 Copynumber: 4.7 Consensus size: 79
50088847 CAAAGCATGA
* * *
50088857 GGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCTGGACTT-AGCCCGGATATAACAC
1 GGGAC-TT-AGCCCGGATATATTACCAGCACGAATGCCTGCAGGACTTAAGCCCGGATATAACAC
* *
50088921 C-GTACGAATGCCTTT
64 CAGCACGAATGCCTTC
** * * *
50088936 GGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTTCGGGACTT-AGCCCGGATATAATACCA
1 GGGACTTAGCCCGGATATATTACCAGCACGAATGCCTGCAGGACTTAAGCCCGGATATAACACCA
50089000 GCACGAATGCCTTC
66 GCACGAATGCCTTC
* * *
50089014 AGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAA-CCCGGATATAACACCA
1 GGGACTTAGCCCGGATATATTACCAGCACGAATGCCTGCAGGACTTAAGCCCGGATATAACACCA
50089078 GCACGAATGCCTTC
66 GCACGAATGCCTTC
* * ** * ***
50089092 GGGACTTAGCCCGGATATTTTTCCAGCACTTA-GCCTGC-GGACTTTAAGTCCGGATATATTTCC
1 GGGACTTAGCCCGGATATATTACCAGCACGAATGCCTGCAGGAC-TTAAGCCCGGATATAACACC
* * *
50089155 AGCA-TAAAGCCTAC
65 AGCACGAATGCCTTC
* * * * *
50089169 -GGACTTCAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC-GGACTTCAAGTCCGGATAT
1 GGGACTT--AGCCCGGATATATTACCAGCACGAATGCCTGCAGGACTT-AAGCCCGGATAT
50089227 TTTTCCAATA
Statistics
Matches: 255, Mismatches: 28, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
76 10 0.04
77 72 0.28
78 167 0.65
79 6 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (79 bp):
GGGACTTAGCCCGGATATATTACCAGCACGAATGCCTGCAGGACTTAAGCCCGGATATAACACCA
GCACGAATGCCTTC
Found at i:50089184 original size:117 final size:117
Alignment explanation
Indices: 50088857--50089188 Score: 368
Period size: 117 Copynumber: 2.8 Consensus size: 117
50088847 CAAAGCATGA
* * *
50088857 GGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCTGGACTTAGCCCGGATATAACACC
1 GGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTGCAGGACTTAGCCCGGATATAATACC
* * *** * *
50088922 -GTACGAATGCCTTTGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTTC
64 AGCACGAAAGCCTACAGGACTTAACCCGGATATAACACCAGCACGAATGCCTTC
*
50088975 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAATACCAG
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCAGGACTTAGCCCGGATATAATACCAG
* *
50089040 CACGAATGCCTTCAGGACTTAACCCGGATATAACACCAGCACGAATGCCTTC
66 CACGAAAGCCTACAGGACTTAACCCGGATATAACACCAGCACGAATGCCTTC
** * ** * * *
50089092 GGGACTTAGCCCGGATATTTTTCCAGCACTTA-GCCTGC-GGACTTTAAGTCCGGATATATTTCC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCAGGAC-TT-AGCCCGGATATAATACC
* *
50089155 AGCA-TAAAGCCTAC-GGACTTCAAGTCCGGATATA
64 AGCACGAAAGCCTACAGGACTT-AA-CCCGGATATA
50089189 TTTCCAGCAT
Statistics
Matches: 189, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
115 10 0.05
116 70 0.37
117 104 0.55
118 5 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (117 bp):
GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTGCAGGACTTAGCCCGGATATAATACCAG
CACGAAAGCCTACAGGACTTAACCCGGATATAACACCAGCACGAATGCCTTC
Found at i:50091297 original size:40 final size:40
Alignment explanation
Indices: 50091219--50091421 Score: 279
Period size: 40 Copynumber: 5.1 Consensus size: 40
50091209 GGGATTTAAT
* * *
50091219 CGGATATAGCT-ACTCGCTC-AATGCCTTCGAGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* **
50091258 CGGATATAGTAACTCGCACCAATGCCTTTAGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
50091298 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
50091338 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
50091378 CGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGCC
50091419 CGG
1 CGG
50091422 TTATCATCCA
Statistics
Matches: 150, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 17 0.11
40 104 0.69
41 24 0.16
42 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:50093049 original size:39 final size:40
Alignment explanation
Indices: 50093001--50093171 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
50092991 GCTCCTCGTT
* * *
50093001 AAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
*
50093041 -AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* * *
50093080 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* * * *
50093120 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 AAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCAC
50093160 AAATGCCTTCGG
1 AAATGCCTTCGG
50093172 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 79 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
Found at i:50093100 original size:40 final size:39
Alignment explanation
Indices: 50093002--50093224 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
50092992 CTCCTCGTTA
* * * *
50093002 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
50093041 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
50093080 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
50093120 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
50093160 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
50093201 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50093225 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:50093184 original size:80 final size:79
Alignment explanation
Indices: 50093001--50093224 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 79
50092991 GCTCCTCGTT
* * * * *
50093001 AAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-A
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
50093065 TTTAATAACTCGCAC
65 TTTAATAACTCGCAC
* * *
50093080 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGA
* *
50093145 ATTT-GTATCTCGCAC
64 ATTTAATAACTCGCAC
* * * * *
50093160 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCGG
50093224 A
63 A
50093225 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.31
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
AAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAAT
TTAATAACTCGCAC
Found at i:50093233 original size:41 final size:41
Alignment explanation
Indices: 50093156--50093233 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50093146 TTTGTATCTC
* * *
50093156 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50093197 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50093234 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50100427 original size:39 final size:40
Alignment explanation
Indices: 50100383--50100553 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
50100373 CTCCTCGTTG
* * *
50100383 AAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
*
50100423 -AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* * *
50100462 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
* * * *
50100502 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 AAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCAC
50100542 AAATGCCTTCGG
1 AAATGCCTTCGG
50100554 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 79 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCAC
Found at i:50100482 original size:40 final size:39
Alignment explanation
Indices: 50100384--50100606 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
50100374 TCCTCGTTGA
* * * *
50100384 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
50100423 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
50100462 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
50100502 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
50100542 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
50100583 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50100607 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:50100566 original size:80 final size:79
Alignment explanation
Indices: 50100383--50100606 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 79
50100373 CTCCTCGTTG
* * * * *
50100383 AAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-A
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
50100447 TTTAATAACTCGCAC
65 TTTAATAACTCGCAC
* * *
50100462 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGA
* *
50100527 ATTT-GTATCTCGCAC
64 ATTTAATAACTCGCAC
* * * * *
50100542 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCGG
50100606 A
63 A
50100607 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.31
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
AAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAAT
TTAATAACTCGCAC
Found at i:50100615 original size:41 final size:41
Alignment explanation
Indices: 50100538--50100615 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50100528 TTTGTATCTC
* * *
50100538 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50100579 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50100616 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50110062 original size:41 final size:40
Alignment explanation
Indices: 50109867--50110069 Score: 265
Period size: 40 Copynumber: 5.1 Consensus size: 40
50109857 TGGGATTTAA
* *
50109867 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
50109906 CC-AATACAGTAACTCGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
50109945 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
50109985 CCGGATATAGTATA-TCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTA-ACTCGCACAAATGCCTTCGGGACTTAGC
*
50110025 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
50110066 CCGG
1 CCGG
50110070 TTATCATCCA
Statistics
Matches: 147, Mismatches: 9, Indels: 14
0.86 0.05 0.08
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 24 0.16
40 82 0.56
41 25 0.17
42 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50128482 original size:5 final size:5
Alignment explanation
Indices: 50128472--50128497 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
50128462 TTTTTCTTGC
50128472 AATTT AATTT AATTT AATTT AATTT A
1 AATTT AATTT AATTT AATTT AATTT A
50128498 TTATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:50132799 original size:25 final size:25
Alignment explanation
Indices: 50132766--50132814 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
50132756 ATTAGTAGTG
*
50132766 ATTATGTGATGATTAAATATTTTTT
1 ATTACGTGATGATTAAATATTTTTT
50132791 ATTACGTGATGATTAAATATTTTT
1 ATTACGTGATGATTAAATATTTTT
50132815 CTAGTTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.53
Consensus pattern (25 bp):
ATTACGTGATGATTAAATATTTTTT
Found at i:50139151 original size:40 final size:40
Alignment explanation
Indices: 50139072--50139274 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
50139062 TGGGATTTAA
* *
50139072 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
50139111 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50139151 CCGGATATAGTAGCTCGCACAAATGGCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50139191 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
50139231 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
50139271 CCGG
1 CCGG
50139275 TTATCATCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 17 0.12
40 129 0.88
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50147135 original size:68 final size:67
Alignment explanation
Indices: 50147063--50147214 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 67
50147053 CATCATGTGT
* * * * * *
50147063 ACAAGAGAGCTATGAGACATTATGATGTAGCTAGGTCGGATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGA-A-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
50147126 TGTAG
63 TGTAG
* *
50147131 ACAAGAGAGCTACGAG-ATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGAATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATG
50147195 TAG
65 TAG
50147198 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
50147215 TAAACTGGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
64 23 0.32
65 3 0.04
66 3 0.04
67 28 0.39
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGAATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGT
AG
Found at i:50163239 original size:46 final size:46
Alignment explanation
Indices: 50163183--50163355 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
50163173 TGGTTGAGCA
50163183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
50163229 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
50163274 CATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
50163322 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50163356 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50163339 original size:93 final size:93
Alignment explanation
Indices: 50163180--50163350 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50163170 GGATGGTTGA
*
50163180 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
50163245 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
50163273 GCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
50163338 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50163351 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:50172985 original size:27 final size:27
Alignment explanation
Indices: 50172955--50173132 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50172945 ATATTGAGTC
* * * *
50172955 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50172982 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50173009 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50173037 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50173064 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50173091 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50173118 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50173133 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50173094 original size:82 final size:81
Alignment explanation
Indices: 50172976--50173131 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50172966 TGCTATATAA
* *
50172976 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50173041 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50173058 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50173122 CACTTAGTGC
65 CACTTAGTGC
50173132 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50180920 original size:27 final size:27
Alignment explanation
Indices: 50180890--50181067 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50180880 ATATTGAGTC
* * * *
50180890 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50180917 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50180944 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50180972 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50180999 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50181026 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50181053 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50181068 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50181029 original size:82 final size:81
Alignment explanation
Indices: 50180911--50181066 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50180901 TGCTATATAA
* *
50180911 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50180976 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50180993 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50181057 CACTTAGTGC
65 CACTTAGTGC
50181067 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50192134 original size:98 final size:97
Alignment explanation
Indices: 50191957--50192134 Score: 232
Period size: 98 Copynumber: 1.8 Consensus size: 97
50191947 GGGATAAGAT
* * *
50191957 GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCACATCAAAGTCGATGCCATGTCGCA
1 GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCACATCAAAGCCGATACCATGTCCCA
* *
50192022 GACATGTTTTACACTAACTTTCATATATAGAG
66 GACAGGTCTTACACTAACTTTCATATATAGAG
* * ** **
50192054 GCCGATGCCTTGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCAGTGCCGATACCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCA-C-ATCAAAGCCGATACCATGTCC
50192118 CAGACAGGTCTTACACT
64 CAGACAGGTCTTACACT
50192135 GACACACAAC
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
96 16 0.24
97 21 0.31
98 31 0.46
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCACATCAAAGCCGATACCATGTCCCA
GACAGGTCTTACACTAACTTTCATATATAGAG
Found at i:50192135 original size:49 final size:49
Alignment explanation
Indices: 50191956--50192135 Score: 177
Period size: 49 Copynumber: 3.7 Consensus size: 49
50191946 TGGGATAAGA
* * *
50191956 TGCCGATGCCATGTCCCAGACATGGTCGTACACTGGCTAGCA-C-ATCAA
1 TGCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCAG
* * * * * ** * *
50192004 AGTCGATGCCATGTCGCAGACATGTTTTACACTAACTTTCATATAT-AG
1 TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
* * *
50192052 AGGCCGATGCCTTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAG
1 -TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
*
50192102 TGCCGATACCATGTCCCAGACAGGTCTTACACTG
1 TGCCGATGCCATGTCCCAGACAGGTCTTACACTG
50192136 ACACACAACA
Statistics
Matches: 103, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
47 12 0.12
48 20 0.19
49 69 0.67
50 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG
Found at i:50192222 original size:48 final size:47
Alignment explanation
Indices: 50192169--50192367 Score: 131
Period size: 46 Copynumber: 4.2 Consensus size: 47
50192159 TCTCAAATAG
50192169 GTCTTACACTAGCTTGTATATCTCGAAGTCGATGCATGTCCCAGACAT
1 GTCTTACACTAGC-TGTATATCTCGAAGTCGATGCATGTCCCAGACAT
* ** * ** *
50192217 GTCTTACACTAGCTCT-CGTCTC-AATATCGATAAATGTCCCAAACAT
1 GTCTTACACTAGCTGTATATCTCGAA-GTCGATGCATGTCCCAGACAT
* * * * * *** *
50192263 GTCTTACATTGGCTTGCATCTCTCGAGGAAAATGCATGTCCTAGACAT
1 GTCTTACACTAGC-TGTATATCTCGAAGTCGATGCATGTCCCAGACAT
* * *
50192311 GTCTTACACTGGCTGTCATAATGT-G--G-CTGATGCATGTCCCAGGCAT
1 GTCTTACACTAGCTGT-AT-ATCTCGAAGTC-GATGCATGTCCCAGACAT
50192357 GTCTTACACTA
1 GTCTTACACTA
50192368 ACACACATGT
Statistics
Matches: 113, Mismatches: 31, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
45 2 0.02
46 58 0.51
47 5 0.04
48 45 0.40
49 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (47 bp):
GTCTTACACTAGCTGTATATCTCGAAGTCGATGCATGTCCCAGACAT
Found at i:50194030 original size:29 final size:27
Alignment explanation
Indices: 50193978--50194031 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 27
50193968 TTAACATATT
*
50193978 TATAATGATTCATTTTCAATAAAATCA
1 TATAATGATTCAATTTCAATAAAATCA
50194005 TATAATAGCATTCAATTT-AATCAAAAT
1 TATAAT-G-ATTCAATTTCAAT-AAAAT
50194032 TATACATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 6 0.26
28 4 0.17
29 13 0.57
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (27 bp):
TATAATGATTCAATTTCAATAAAATCA
Found at i:50199368 original size:41 final size:44
Alignment explanation
Indices: 50199304--50199419 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 44
50199294 TCTCATATCA
*
50199304 ATGCC-ACGTCCCAGACAGGGTCTTACACGAA-T-CA-AGTA-TG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAACTACATA-TATTG
** * *
50199344 ATGCTGATGTCCCAGACATGGTCTTACATGTAACTACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACTACATATATTG
50199389 ATGCCAACGTCCCAGACATGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
50199420 GAACACATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
40 4 0.06
41 21 0.34
42 2 0.03
43 1 0.02
44 5 0.08
45 29 0.47
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAACTACATATATTG
Found at i:50200903 original size:29 final size:29
Alignment explanation
Indices: 50200837--50200947 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 29
50200827 AAATCCACAT
* *
50200837 ACCTATATCTGGCCCATTAAG-CCTAATC
1 ACCTATATATGGCCCATTAAGCCCAAATC
*
50200865 A--TATTCATATGGCCCATTAAGCCCGAATC
1 ACCTA-T-ATATGGCCCATTAAGCCCAAATC
* * *
50200894 ACCTATATATTGTCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATC
* * * * *
50200923 ACATTTACATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCA
50200948 GTCAGATTCA
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
26 2 0.03
27 1 0.02
28 15 0.23
29 45 0.68
30 1 0.02
31 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
ACCTATATATGGCCCATTAAGCCCAAATC
Found at i:50201040 original size:17 final size:18
Alignment explanation
Indices: 50201018--50201053 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50201008 TTGCGTATTA
50201018 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
50201035 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
50201053 T
1 T
50201054 CTGGCCTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:50203864 original size:281 final size:281
Alignment explanation
Indices: 50203357--50203922 Score: 1046
Period size: 281 Copynumber: 2.0 Consensus size: 281
50203347 TTCCACGTAA
*
50203357 CTCG-CACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCATGTGACCCGCTCAGGTT
1 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
*
50203421 GGATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCTTAAGTAGTGACACCACCCCT
66 GGATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
50203486 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
131 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
50203551 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCCATTTGCACGAAGTC
196 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCCATTTGCACGAAGTC
*
50203616 GCTCCGGAATA-CCCCTGATTC
261 GCTCCGGAAAACCCCCT-ATTC
50203637 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
1 CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
* * *
50203702 GGATGCCCTCTTTCATTGTTAGCCACCATTGGTAAGCTTCTTCCCTAAGTAGTGACACCGCCCCT
66 GGATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
50203767 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
131 TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
*
50203832 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCCATTTGTACGAAGTC
196 TTCAGCCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCCATTTGCACGAAGTC
50203897 GCTCCGGAAAACCCCCTATTC
261 GCTCCGGAAAACCCCCTATTC
50203918 CTCGT
1 CTCGT
50203923 GCCATTATTG
Statistics
Matches: 277, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
280 4 0.01
281 268 0.97
282 5 0.02
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.27
Consensus pattern (281 bp):
CTCGTCACCTACATACTTCCCCTGAGATGCTGCCTGAAAGAACTCCCACGTGACCCGCTCAGGTT
GGATGCCCTCTTTCACTGTTAGCCACCACTGGTAAGCTTCTTCCCTAAGTAGTGACACCACCCCT
TTCAGCTTTTGTTCAGGTGAACAGTCCAAATCCTCCATTATCCTTTCTGTGGCCTACAACCAGTA
TTCAGCCACATTAGGAGCCACACCAGCCACGCCCTTAAAGATCTCATCCCCATTTGCACGAAGTC
GCTCCGGAAAACCCCCTATTC
Found at i:50204650 original size:20 final size:21
Alignment explanation
Indices: 50204605--50204651 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
50204595 ATTTTCATCG
*
50204605 AAAACCCTTCTTAAAATAAAA
1 AAAACCCTACTTAAAATAAAA
* *
50204626 GAAACCCTACTT-AACTAAAA
1 AAAACCCTACTTAAAATAAAA
50204646 AAAACC
1 AAAACC
50204652 TTTTAGTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.55, C:0.23, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAACCCTACTTAAAATAAAA
Found at i:50205647 original size:21 final size:20
Alignment explanation
Indices: 50205623--50205661 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
50205613 GAGTATTTTG
50205623 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
50205644 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
50205662 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:50205671 original size:21 final size:21
Alignment explanation
Indices: 50205623--50205669 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
50205613 GAGTATTTTG
*
50205623 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
50205644 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
50205665 A-GTTT
1 ATGTTT
50205670 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:50208863 original size:47 final size:47
Alignment explanation
Indices: 50208800--50208900 Score: 193
Period size: 47 Copynumber: 2.1 Consensus size: 47
50208790 ATGATAGTAT
50208800 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50208847 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
50208894 TGCCTAA
1 GGCCTAA
50208901 ATGTGAAAGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:50208888 original size:16 final size:16
Alignment explanation
Indices: 50208869--50208922 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
50208859 GATGTGATGA
50208869 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
** *
50208885 ATGTGATAA-TGCCTAA
1 ATGTGA-AAGTGTATAT
50208901 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
50208917 ATGTGA
1 ATGTGA
50208923 TAATGCCTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 2 0.07
16 26 0.87
17 2 0.07
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:50208909 original size:32 final size:32
Alignment explanation
Indices: 50208868--50208932 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
50208858 CGATGTGATG
50208868 AATGTGAAAGTGTATATATGTGATAATGCCTA
1 AATGTGAAAGTGTATATATGTGATAATGCCTA
50208900 AATGTGAAAGTGTATATATGTGATAATGCCTA
1 AATGTGAAAGTGTATATATGTGATAATGCCTA
50208932 A
1 A
50208933 TGGCCGATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (32 bp):
AATGTGAAAGTGTATATATGTGATAATGCCTA
Found at i:50208916 original size:79 final size:79
Alignment explanation
Indices: 50208821--50208979 Score: 291
Period size: 79 Copynumber: 2.0 Consensus size: 79
50208811 CGATGTGATG
*
50208821 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATA
*
50208886 TGTGATAATGCCTA
66 TGTGATAAGGCCTA
*
50208900 AATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATA
50208965 TGTGATAAGGCCTA
66 TGTGATAAGGCCTA
50208979 A
1 A
50208980 TGGCCGATGT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (79 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATA
TGTGATAAGGCCTA
Found at i:50208957 original size:47 final size:47
Alignment explanation
Indices: 50208900--50209199 Score: 492
Period size: 47 Copynumber: 6.2 Consensus size: 47
50208890 ATAATGCCTA
*
50208900 AATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50208947 AATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50208994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50209041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
50209088 AATGTGAAAGTGTATATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
50209139 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
50209188 AATGTGATAAGT
1 AATGTGA-AAGT
50209200 CCCGAAGGGC
Statistics
Matches: 242, Mismatches: 6, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
47 148 0.61
49 44 0.18
50 4 0.02
51 46 0.19
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50209373 original size:37 final size:37
Alignment explanation
Indices: 50209317--50209395 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50209307 CCGAGCTCTA
* * *
50209317 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50209354 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50209391 AAGAC
1 AAGAC
50209396 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50212285 original size:37 final size:37
Alignment explanation
Indices: 50212235--50212313 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50212225 TTATTACGAA
* *
50212235 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
50212272 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50212309 GTCTT
1 GTCTT
50212314 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50212494 original size:47 final size:47
Alignment explanation
Indices: 50212432--50212795 Score: 566
Period size: 47 Copynumber: 7.6 Consensus size: 47
50212422 GCCTTCGGGA
* * * * * *
50212432 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50212479 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50212526 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50212573 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50212624 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50212671 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50212718 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50212769 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50212796 TATTCAAATA
Statistics
Matches: 295, Mismatches: 14, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
47 203 0.69
51 92 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50212629 original size:98 final size:94
Alignment explanation
Indices: 50212432--50212795 Score: 566
Period size: 98 Copynumber: 3.8 Consensus size: 94
50212422 GCCTTCGGGA
* * * * * * * *
50212432 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50212497 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
50212526 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
50212591 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
50212624 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
50212689 TCTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
50212718 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
50212783 ACACTTTCACATT
62 ACACTTTCACATT
50212796 TATTCAAATA
Statistics
Matches: 250, Mismatches: 12, Indels: 12
0.91 0.04 0.04
Matches are distributed among these distances:
94 92 0.37
98 158 0.63
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:50212706 original size:145 final size:145
Alignment explanation
Indices: 50212443--50212795 Score: 643
Period size: 145 Copynumber: 2.4 Consensus size: 145
50212433 TTATCACATT
* * * * * * *
50212443 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
50212508 TCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
50212573 CTTATCACATATATA
131 CTTATCACATATATA
50212588 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
50212653 TCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
50212718 CTTATCACATATATA
131 CTTATCACATATATA
50212733 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
50212796 TATTCAAATA
Statistics
Matches: 201, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 201 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (145 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATA
Found at i:50215677 original size:43 final size:43
Alignment explanation
Indices: 50215629--50215731 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
50215619 TTGGTTTTCA
*
50215629 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
50215672 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
*
50215715 GCACTAAGTGTGTGGGC
1 GCACTAAGTGTGCGGGC
50215732 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
Found at i:50215747 original size:29 final size:29
Alignment explanation
Indices: 50215713--50215786 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50215703 GTTGTGAGAT
* * *
50215713 TGGCACTAAGTGTGTGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
50215742 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
50215771 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50215787 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:50216224 original size:40 final size:40
Alignment explanation
Indices: 50216101--50216456 Score: 387
Period size: 40 Copynumber: 8.9 Consensus size: 40
50216091 TCGAATGATG
** *
50216101 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
50216141 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
50216181 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
50216221 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
50216261 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
50216301 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
50216341 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
50216381 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
50216421 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
50216457 CGTGTATTCA
Statistics
Matches: 272, Mismatches: 40, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.00
40 253 0.93
41 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:50216314 original size:120 final size:120
Alignment explanation
Indices: 50216101--50216451 Score: 431
Period size: 120 Copynumber: 2.9 Consensus size: 120
50216091 TCGAATGATG
* * *
50216101 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGATCCGAAGAGCA
* * * *
50216163 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
50216221 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
* * * *
50216286 CATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * *
50216341 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGA-TCCGAAGAGCAT
* * * * *
50216405 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
65 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
50216452 GGTGACGTGT
Statistics
Matches: 198, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
120 173 0.87
121 19 0.10
122 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:50220170 original size:49 final size:47
Alignment explanation
Indices: 50219971--50220242 Score: 463
Period size: 47 Copynumber: 5.7 Consensus size: 47
50219961 ATGATAGTAT
50219971 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50220018 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
50220065 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
50220112 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
50220161 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
50220210 GGCCTATTGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
50220243 CCCGAAGGGC
Statistics
Matches: 218, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 125 0.57
49 89 0.41
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:50220416 original size:37 final size:37
Alignment explanation
Indices: 50220360--50220438 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50220350 CCGAGCTCTA
* * *
50220360 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50220397 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50220434 AAGAC
1 AAGAC
50220439 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50222656 original size:18 final size:18
Alignment explanation
Indices: 50222633--50222683 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
50222623 ACTATTATTT
50222633 TCTCTTATTCTTTTCTCC
1 TCTCTTATTCTTTTCTCC
*
50222651 TCTCTTCA-TCTATTTCTTC
1 TCTCTT-ATTCT-TTTCTCC
*
50222670 T-TCTTCTTCTTTTC
1 TCTCTTATTCTTTTC
50222684 CTCTATAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 4 0.14
18 16 0.57
19 8 0.29
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTATTCTTTTCTCC
Found at i:50223954 original size:28 final size:28
Alignment explanation
Indices: 50223911--50224026 Score: 164
Period size: 28 Copynumber: 4.2 Consensus size: 28
50223901 GGAGGAAGCG
*
50223911 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
50223939 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
50223967 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
50223995 ATCTGGTGGCTCTGTCA-TAATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
50224021 TTCTGG
1 TTCTGG
50224027 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 5 0.06
27 7 0.09
28 67 0.85
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:50231707 original size:27 final size:27
Alignment explanation
Indices: 50231677--50231734 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
50231667 TACTGAAGTA
*
50231677 CCCTAAGTATG-AAAATTACCATTATAC
1 CCCTAAG-ATGCAAAATGACCATTATAC
*
50231704 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGATGCAAAATGACCATTATAC
50231730 CCCTA
1 CCCTA
50231735 GGGTTGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 2 0.07
26 21 0.78
27 4 0.15
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (27 bp):
CCCTAAGATGCAAAATGACCATTATAC
Found at i:50249705 original size:39 final size:39
Alignment explanation
Indices: 50249588--50249849 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
50249578 GCTCCTCGTT
* * *
50249588 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
50249628 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
50249668 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
50249707 CAAATGCCTTCGGGCTTAGCCCGGAATAAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50249746 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
50249785 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
50249826 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
50249850 CATCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 60 0.30
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:50257790 original size:64 final size:64
Alignment explanation
Indices: 50257686--50257893 Score: 188
Period size: 67 Copynumber: 3.2 Consensus size: 64
50257676 CATCATGTGT
*
50257686 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TA-TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
50257751 TAG
62 TAG
* * * * * * *
50257754 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
50257819 AG
63 AG
* * * * * *
50257821 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATG-GG
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG
50257883 TACAAGAGAGC
1 -ACAAGAGAGC
50257894 CGAACTATAT
Statistics
Matches: 115, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 22 0.19
65 9 0.08
66 20 0.17
67 32 0.28
68 13 0.11
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:50266734 original size:21 final size:21
Alignment explanation
Indices: 50266710--50266759 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
50266700 GGTTGTTTAG
*
50266710 ATGTTTTATGATAGATTATTA
1 ATGTTTTATGATAGATTAATA
* * *
50266731 ATGTTTGAAGTTAGATTAATA
1 ATGTTTTATGATAGATTAATA
50266752 A-GTTTTAT
1 ATGTTTTAT
50266760 AAAGTGATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (21 bp):
ATGTTTTATGATAGATTAATA
Found at i:50267390 original size:23 final size:24
Alignment explanation
Indices: 50267346--50267409 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 24
50267336 TGAGTATTTA
*
50267346 AATGTATAT-ATTTAATTGAATTG
1 AATGTATATGATTTAATTAAATTG
*
50267369 AATGTATATGATTTGA-TAAATTG
1 AATGTATATGATTTAATTAAATTG
50267392 AAT-TAT-TGA-TT-ATTAAAT
1 AATGTATATGATTTAATTAAAT
50267410 GCTTAAATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 1 0.03
20 7 0.19
21 3 0.08
22 3 0.08
23 18 0.49
24 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (24 bp):
AATGTATATGATTTAATTAAATTG
Found at i:50267611 original size:23 final size:23
Alignment explanation
Indices: 50267569--50267673 Score: 149
Period size: 23 Copynumber: 4.6 Consensus size: 23
50267559 TTAGCTTGTA
*
50267569 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
*
50267593 GGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
50267616 AGAGCTTACTG-TTCAGCTCGAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
50267638 AGAGCTTACCGTTTTAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
50267661 AGAGCTTACTGTT
1 AGAGCTTACTGTT
50267674 CATCAACTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
22 20 0.28
23 42 0.58
24 10 0.14
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:50267643 original size:45 final size:45
Alignment explanation
Indices: 50267569--50267675 Score: 153
Period size: 45 Copynumber: 2.3 Consensus size: 45
50267559 TTAGCTTGTA
* *
50267569 AGAGCTTACTGTTTTCAGCTCATTGGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTG--TTCAGCTCATTAGAGCTTACCGTTTCAGCTCAAT
*
50267616 AGAGCTTACTGTTCAGCTCGA-TAGAGCTTACCGTTTTAGCTCAAT
1 AGAGCTTACTGTTCAGCTC-ATTAGAGCTTACCGTTTCAGCTCAAT
50267661 AGAGCTTACTGTTCA
1 AGAGCTTACTGTTCA
50267676 TCAACTTAAG
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
45 44 0.79
46 1 0.02
47 11 0.20
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (45 bp):
AGAGCTTACTGTTCAGCTCATTAGAGCTTACCGTTTCAGCTCAAT
Found at i:50272338 original size:21 final size:21
Alignment explanation
Indices: 50272314--50272372 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
50272304 ATCCCTAGTT
50272314 CACACAGTCGTGTGCCTATGC
1 CACACAGTCGTGTGCCTATGC
* *
50272335 CACACGGTCATGTGCCTATGC
1 CACACAGTCGTGTGCCTATGC
50272356 CACA-AGGTCGTGTGCCT
1 CACACA-GTCGTGTGCCT
50272373 CCCTCCATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.32, G:0.25, T:0.24
Consensus pattern (21 bp):
CACACAGTCGTGTGCCTATGC
Found at i:50275790 original size:21 final size:21
Alignment explanation
Indices: 50275766--50275813 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
50275756 ACACGGGTGC
*
50275766 GTGCCTATGGCACAAGGTCAT
1 GTGCCTATGCCACAAGGTCAT
* *
50275787 GTGCCTATGCCACACGGTCGT
1 GTGCCTATGCCACAAGGTCAT
50275808 GTGCCT
1 GTGCCT
50275814 CCCTCCATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25
Consensus pattern (21 bp):
GTGCCTATGCCACAAGGTCAT
Found at i:50288036 original size:16 final size:16
Alignment explanation
Indices: 50287997--50288027 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50287987 AAATTAAATA
*
50287997 AATAAAATAAATAAAC
1 AATAAAATAAACAAAC
50288013 AATAAAATAAACAAA
1 AATAAAATAAACAAA
50288028 TAATTAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (16 bp):
AATAAAATAAACAAAC
Found at i:50291440 original size:11 final size:11
Alignment explanation
Indices: 50291424--50291452 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
50291414 GCTGTAAACA
50291424 TTTAAAATAAT
1 TTTAAAATAAT
50291435 TTTAAAATAAT
1 TTTAAAATAAT
50291446 TTTAAAA
1 TTTAAAA
50291453 CCTCAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TTTAAAATAAT
Found at i:50296066 original size:40 final size:40
Alignment explanation
Indices: 50296022--50296193 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
50296012 AGACTAAGAT
*
50296022 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
50296062 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
50296102 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
50296142 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
50296181 CCGAAGGCATTTG
1 CCGAAGGCATTTG
50296194 AACGAGGAGA
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:50296107 original size:80 final size:79
Alignment explanation
Indices: 50296022--50296193 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
50296012 AGACTAAGAT
*
50296022 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
50296086 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
50296102 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
50296167 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
50296181 CCGAAGGCATTTG
1 CCGAAGGCATTTG
50296194 AACGAGGAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:50296211 original size:79 final size:80
Alignment explanation
Indices: 50296049--50296226 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
50296039 AGATACAAAT
* * * *
50296049 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
50296114 GTGCGAGTTATTAAA
66 GAACGAGTGAATAAA
* * * * *
50296129 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
50296193 GAACGAG-GAGATATA
66 GAACGAGTGA-ATAAA
*
50296208 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50296227 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGAATAAA
Found at i:50303931 original size:24 final size:24
Alignment explanation
Indices: 50303904--50303957 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
50303894 TGGAAGGTAT
*
50303904 GTATATATGTGTTTATGTGTATAA
1 GTATATATGTGTTCATGTGTATAA
* *
50303928 GTATGTATGTGTTCATGTGTATAT
1 GTATATATGTGTTCATGTGTATAA
50303952 GTATAT
1 GTATAT
50303958 GAAGGTGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.50
Consensus pattern (24 bp):
GTATATATGTGTTCATGTGTATAA
Found at i:50307164 original size:22 final size:22
Alignment explanation
Indices: 50307139--50307218 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
50307129 TAGCTCGTAT
* *
50307139 GAGCTTATTGTTTAGCTTAATA
1 GAGCTTACTGTTCAGCTTAATA
*
50307161 GAGCTTACTGTTCAGCTTGATA
1 GAGCTTACTGTTCAGCTTAATA
* *
50307183 GAGCTTACCT-TTCAGCTCATTA
1 GAGCTTA-CTGTTCAGCTTAATA
*
50307205 AAGCTTACTGTTCA
1 GAGCTTACTGTTCA
50307219 TCAGCTCAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
21 2 0.04
22 45 0.92
23 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTTAATA
Found at i:50312842 original size:34 final size:34
Alignment explanation
Indices: 50312794--50312858 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
50312784 AATTACATTT
*
50312794 CTGTTACTGTTACTGAATTGGGCTAAGGCCCACA
1 CTGTTACTGATACTGAATTGGGCTAAGGCCCACA
*
50312828 CTGTTACTGATACTGTATTGGGCTAAGGCCC
1 CTGTTACTGATACTGAATTGGGCTAAGGCCC
50312859 TAACTAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (34 bp):
CTGTTACTGATACTGAATTGGGCTAAGGCCCACA
Found at i:50312870 original size:34 final size:34
Alignment explanation
Indices: 50312798--50312870 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
50312788 ACATTTCTGT
* **
50312798 TACTGTTACTGAATTGGGCTAAGGCCCACACTGT
1 TACTGATACTGAATTGGGCTAAGGCCCACACTAA
*
50312832 TACTGATACTGTATTGGGCTAAGGCCCTA-ACTAA
1 TACTGATACTGAATTGGGCTAAGGCCC-ACACTAA
50312866 TACTG
1 TACTG
50312871 GACTGTCACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (34 bp):
TACTGATACTGAATTGGGCTAAGGCCCACACTAA
Found at i:50313848 original size:12 final size:12
Alignment explanation
Indices: 50313833--50313857 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50313823 GCCAAACACA
50313833 TGCCCATGTCCC
1 TGCCCATGTCCC
50313845 TGCCCATGTCCC
1 TGCCCATGTCCC
50313857 T
1 T
50313858 CACACGGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.48, G:0.16, T:0.28
Consensus pattern (12 bp):
TGCCCATGTCCC
Found at i:50320147 original size:40 final size:40
Alignment explanation
Indices: 50319906--50320133 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
50319896 TATTCGGATG
* *
50319906 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
50319946 A-ATTCCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
50319985 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
50320025 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
50320065 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
50320105 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
50320134 AGCAAGTAGC
Statistics
Matches: 179, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 36 0.20
40 143 0.80
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:50320147 original size:120 final size:119
Alignment explanation
Indices: 50319906--50320166 Score: 375
Period size: 119 Copynumber: 2.2 Consensus size: 119
50319896 TATTCGGATG
* *
50319906 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCAGGCTAAGCCCGAAGGCAT
* * *
50319971 TTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
* *
50320025 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCAGGCTAAG-CCCGAAGGC
*
50320089 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
64 ATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
50320145 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
50320167 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
118 2 0.02
119 63 0.49
120 63 0.49
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCAGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:50326993 original size:53 final size:53
Alignment explanation
Indices: 50326811--50327064 Score: 218
Period size: 53 Copynumber: 4.8 Consensus size: 53
50326801 ATTAGGGTTT
* * * *
50326811 AAGGATACCATGTAAGACCGTGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
50326866 AAGGAAATCATGT-AGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
50326920 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
50326973 AAGGATACCATGTAATACCATGTCAATACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
50327022 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
50327065 GTACCCGCGT
Statistics
Matches: 165, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
49 38 0.23
51 3 0.02
52 8 0.05
53 47 0.28
54 27 0.16
55 42 0.25
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:50327016 original size:108 final size:109
Alignment explanation
Indices: 50326818--50327017 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 109
50326808 TTTAAGGATA
* * *
50326818 CCATGTAAGACCGTGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGAAATCATGTAGAC
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAGAC
*
50326883 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
50326927 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAT
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGT-AG
* *
50326989 ACCATGTCAATACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
50327018 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
106 3 0.04
107 17 0.22
108 34 0.43
109 25 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:50327276 original size:16 final size:16
Alignment explanation
Indices: 50327255--50327285 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50327245 AATAAATTTA
50327255 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
50327271 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
50327286 AGTGACGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:50334497 original size:55 final size:53
Alignment explanation
Indices: 50334410--50334643 Score: 246
Period size: 55 Copynumber: 4.4 Consensus size: 53
50334400 ATTAGGGTTT
* *
50334410 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
50334465 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * *
50334520 AAAGG-TCCCATGAAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
50334573 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
*
50334622 AAGGATACCAAGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
50334644 ATAAGTCATG
Statistics
Matches: 150, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 21 0.14
52 7 0.05
53 41 0.27
54 11 0.07
55 66 0.44
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:50336390 original size:39 final size:39
Alignment explanation
Indices: 50336336--50336414 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
50336326 GAAGAAGAGA
*
50336336 TACAATTGGATTTAAGAAAAAGAATTAGAGATTAATGTT
1 TACAATTGGATTTAAGAAAAAGAATTAGAGATCAATGTT
50336375 TACAATTGGATTTAAGAAAAAGAATTAGAGATCAATGTT
1 TACAATTGGATTTAAGAAAAAGAATTAGAGATCAATGTT
50336414 T
1 T
50336415 TGGAGAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.33
Consensus pattern (39 bp):
TACAATTGGATTTAAGAAAAAGAATTAGAGATCAATGTT
Found at i:50337973 original size:22 final size:22
Alignment explanation
Indices: 50337933--50337994 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
50337923 TACGAGGCAC
*
50337933 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
50337954 AGGGGCAACATGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
50337976 AGGGGCAACACACCCGTGT
1 AGGGGCAACACGCCCGTGT
50337995 CCTCCACCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 6 0.17
22 30 0.83
ACGTcount: A:0.21, C:0.27, G:0.40, T:0.11
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:50339025 original size:46 final size:44
Alignment explanation
Indices: 50338895--50339106 Score: 178
Period size: 47 Copynumber: 4.5 Consensus size: 44
50338885 GTGTCAATGC
* * *
50338895 CATGTCCCAGACACGGTCTTACACTGGCTTATATCTCAAGTCGAAG
1 CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAG-CCAAG
**
50338941 CCATGTCCCAGACATGGTCTTACACTAAC-TATCATCTCATAGCCAACG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCA-AGCCAA-G
* *
50338989 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAA-GCC-AAG
* *
50339035 CATGTCCCAGACATGTCTTACACTAGCACT-CATCTCAAAG-CAGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TTACATCTC-AAGCCA-A-G
*
50339081 TCGTGTCCCAGACATAGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
50339107 AGCTCTCACA
Statistics
Matches: 138, Mismatches: 14, Indels: 25
0.78 0.08 0.14
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 56 0.41
47 66 0.48
48 13 0.09
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGCCAAG
Found at i:50339088 original size:93 final size:93
Alignment explanation
Indices: 50338895--50339106 Score: 261
Period size: 93 Copynumber: 2.3 Consensus size: 93
50338885 GTGTCAATGC
* * *
50338895 CATGTCCCAGACACGGTCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAGCCGAAGCCATGTCCCAGACATGGTC
*
50338960 TTACACTAACTATCATCTCATAGCCAACG
65 TTACACTAACTATCATCTCAAAGCCAACG
* *
50338989 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCCGATG-CATGTCCCAGACAT-GTC
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAA-GCCGAAGCCATGTCCCAGACATGGTC
* *
50339052 TTACACTAGC-ACTCATCTCAAAG-CAGATG
65 TTACACTAACTA-TCATCTCAAAGCCA-ACG
*
50339081 TCGTGTCCCAGACATAGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
50339107 AGCTCTCACA
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
91 3 0.03
92 24 0.23
93 49 0.47
94 28 0.27
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGCCGAAGCCATGTCCCAGACATGGTCT
TACACTAACTATCATCTCAAAGCCAACG
Found at i:50345921 original size:46 final size:47
Alignment explanation
Indices: 50345871--50345990 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 47
50345861 TAGCCAACGT
* *
50345871 ATGTCCCACACATGTCTTACACTAGC-TTACGTCTCAAGGCCGATG-C
1 ATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAGGCCGATGCC
* * *
50345917 ATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCTGGTGCC
1 ATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGATGCC
*
50345964 GTGTCCCAGACATGGTCTTACACTAGC
1 ATGTCCCAGACAT-GTCTTACACTAGC
50345991 GCTCACAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 38 0.58
47 14 0.22
48 13 0.20
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGATGCC
Found at i:50348964 original size:14 final size:14
Alignment explanation
Indices: 50348945--50348972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50348935 GGGGTTATTT
50348945 TGTACATATTAAAA
1 TGTACATATTAAAA
50348959 TGTACATATTAAAA
1 TGTACATATTAAAA
50348973 AGGGCTACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
TGTACATATTAAAA
Found at i:50355749 original size:23 final size:23
Alignment explanation
Indices: 50355676--50355749 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
50355666 GAATGGCAAA
50355676 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* ** **
50355699 TGTG-TGCTAAGGCCAA-ATTGCAAA
1 TGTGATG--AATGTGAACA-TGCATT
50355723 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
50355746 TGTG
1 TGTG
50355750 TGATAAGACC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 2 0.06
23 18 0.50
24 14 0.39
25 2 0.06
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:50356094 original size:47 final size:47
Alignment explanation
Indices: 50355659--50356060 Score: 597
Period size: 47 Copynumber: 8.6 Consensus size: 47
50355649 ATACATGAGC
* * * *
50355659 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * * *
50355706 TAAGGCCAAATTGCAAATGTGATGAATGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
50355753 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
50355800 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
50355847 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGTATATCTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
50355894 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
50355941 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
50355988 TAAGGCCGAATGACCAATGTGATAAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
50356035 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
50356061 CGTGGATGTG
Statistics
Matches: 326, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 326 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:50356127 original size:46 final size:46
Alignment explanation
Indices: 50356074--50356164 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
50356064 GGATGTGTAT
* * *
50356074 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * * *
50356120 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
50356165 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:50357641 original size:23 final size:23
Alignment explanation
Indices: 50357615--50357681 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
50357605 ATATATCCGG
50357615 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
50357638 GCT-AGT---G-ATA-TATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
50357655 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
50357678 GCTA
1 GCTA
50357682 GTGATATATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 7 0.23
18 5 0.17
19 1 0.03
21 1 0.03
22 5 0.17
23 11 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:50357658 original size:40 final size:40
Alignment explanation
Indices: 50357606--50358124 Score: 716
Period size: 40 Copynumber: 13.0 Consensus size: 40
50357596 TTCAGTATGA
* *
50357606 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50357646 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
50357686 TATATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50357726 TATATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
50357766 TATATTCGGGCTAAGTCTCGAAGAGCATTCGTGTTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50357806 TATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
** * * *
50357846 TATATCAAGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50357886 TATATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50357926 TATATCCGGGCTAAGTCTCC-AAGAGCATTCGTGCTAGAGT
1 TATATCCGGGCTAAGTC-CCGAAGAGCATTCGTGCTGGTGT
* *
50357966 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50358006 TATATCAGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
50358046 CATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
50358086 TATATCAGGGCTATGTCCCGAAGAGCATTCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
50358125 ATGTGTATTC
Statistics
Matches: 428, Mismatches: 49, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 425 0.99
41 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:50358338 original size:25 final size:25
Alignment explanation
Indices: 50358288--50358340 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
50358278 TGTGTAACAA
* *
50358288 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
50358313 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
50358338 CAA
1 CAA
50358341 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:50361964 original size:23 final size:23
Alignment explanation
Indices: 50361891--50361964 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
50361881 GAATGGCAAA
50361891 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
50361914 TGTG-TGCTAAGGTCAA-ATTGCAAA
1 TGTGATG--AATGTGAACA-TGCATT
50361938 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
50361961 TGTG
1 TGTG
50361965 TGATAAGACC
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
22 2 0.05
23 19 0.50
24 15 0.39
25 2 0.05
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:50362309 original size:47 final size:47
Alignment explanation
Indices: 50361874--50362275 Score: 588
Period size: 47 Copynumber: 8.6 Consensus size: 47
50361864 ATACATGAGC
* * * *
50361874 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * * * *
50361921 TAAGGTCAAATTGCAAATGTGATGAATGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
50361968 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
50362015 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
50362062 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGTATATCTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
50362109 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
50362156 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
50362203 TAAGGCCGAATGACCAATGTGATAAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
50362250 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
50362276 CGTGGATGTG
Statistics
Matches: 324, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 324 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:50362342 original size:46 final size:46
Alignment explanation
Indices: 50362289--50362379 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
50362279 GGATGTGTAT
* * *
50362289 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * * *
50362335 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
50362380 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:50363857 original size:23 final size:23
Alignment explanation
Indices: 50363831--50363897 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
50363821 ATATATCCGG
50363831 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
50363854 GCT-AGT---G-ATA-TATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
50363871 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
50363894 GCTA
1 GCTA
50363898 GTGATATATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 7 0.23
18 5 0.17
19 1 0.03
21 1 0.03
22 5 0.17
23 11 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:50364086 original size:160 final size:160
Alignment explanation
Indices: 50363822--50364249 Score: 730
Period size: 160 Copynumber: 2.7 Consensus size: 160
50363812 TTCAGTATGA
* * *
50363822 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
* * * * *
50363887 CATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTGCGCTAGTGATATATCCGGG
66 CATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGATATATCCGGG
50363952 TTAAGTCCCGAAGAGCATACGTGCTGGTGT
131 TTAAGTCCCGAAGAGCATACGTGCTGGTGT
* *
50363982 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
50364047 CATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGATATATCCGGG
66 CATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGATATATCCGGG
50364112 TTAAGTCCCGAAGAGCATACGTGCTGGTGT
131 TTAAGTCCCGAAGAGCATACGTGCTGGTGT
* * * *
50364142 TATATCCGGGCTAAGTCTCGAAGAGTATTCGTGCTAGAGTTATATCCGGGCTAAGTCTCAAATAG
1 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
50364207 CATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAGCAT
66 CATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAGCAT
50364250 ACGTGCTGGT
Statistics
Matches: 252, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
160 252 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (160 bp):
TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTGGAGTTATATCAGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGATATATCCGGG
TTAAGTCCCGAAGAGCATACGTGCTGGTGT
Found at i:50364257 original size:40 final size:40
Alignment explanation
Indices: 50363822--50364259 Score: 606
Period size: 40 Copynumber: 10.9 Consensus size: 40
50363812 TTCAGTATGA
* *
50363822 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50363862 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
50363902 TATATCCGGGCTAAGTCCCGAAGAGCATTTGCGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50363942 TATATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50363982 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50364022 TATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
50364062 TATATCAGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50364102 TATATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
50364142 TATATCCGGGCTAAGTCTCGAAGAGTATTCGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
50364182 TATATCCGGGCTAAGTCTCAAATAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
50364222 TATATCAGGGCTAAGTCCCGAAGAGCATACGTGCTGGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
50364260 TACGGGATAG
Statistics
Matches: 358, Mismatches: 40, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 358 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:50366313 original size:27 final size:26
Alignment explanation
Indices: 50366274--50366384 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
50366264 GGAAGCGTCT
*
50366274 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGATC
*
50366301 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGATC
*
50366328 TGGTGGATCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCAC-ATTATCTG-ATC
* * * *
50366356 TGGTGACTCTGTCACATCATCTGTTC
1 TGGTGGCTCTGCCACATTATCTGATC
50366382 TGG
1 TGG
50366385 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGATC
Found at i:50366378 original size:54 final size:54
Alignment explanation
Indices: 50366274--50366384 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
50366264 GGAAGCGTCT
* * *
50366274 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGATATGCCACAATTATCTGATCTGGTGACTCTGCCACATACATCTGTTC
* * *
50366328 TGGTGGATCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-CATCTGTTC
1 TGGTGGATATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATACATCTGTTC
50366382 TGG
1 TGG
50366385 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
TGGTGGATATGCCACAATTATCTGATCTGGTGACTCTGCCACATACATCTGTTC
Found at i:50370546 original size:47 final size:47
Alignment explanation
Indices: 50370484--50370829 Score: 514
Period size: 47 Copynumber: 7.4 Consensus size: 47
50370474 AATGTGAAAG
*
50370484 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
50370531 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
50370578 TGTGTATGTGTGATAAGACCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
50370625 TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTAAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
50370672 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
50370719 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
50370766 TGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
50370812 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
50370830 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 20, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 277 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:50374772 original size:49 final size:49
Alignment explanation
Indices: 50374712--50375118 Score: 615
Period size: 47 Copynumber: 8.6 Consensus size: 49
50374702 GATAATTGTG
50374712 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50374759 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50374808 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50374855 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50374904 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50374953 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50375000 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
50375047 ATGTGAAAGTG--TATATATGTGA-CAGGGCGAGTGGGCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50375093 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
50375119 TCCCAAAGGG
Statistics
Matches: 337, Mismatches: 16, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
46 33 0.10
47 155 0.46
48 4 0.01
49 145 0.43
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50374814 original size:96 final size:96
Alignment explanation
Indices: 50374712--50375064 Score: 611
Period size: 96 Copynumber: 3.7 Consensus size: 96
50374702 GATAATTGTG
*
50374712 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
50374777 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
50374808 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
50374873 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
50374904 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
50374967 ATATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50375000 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
50375065 GTGACAGGGC
Statistics
Matches: 243, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
94 48 0.20
96 148 0.61
98 47 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (96 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50377626 original size:165 final size:159
Alignment explanation
Indices: 50377342--50377774 Score: 656
Period size: 165 Copynumber: 2.7 Consensus size: 159
50377332 AGGTCTCGAC
* *
50377342 GATG-ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT-TCCCGGGCTAAGTCTCGAA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT-CC-GGCTAAGTCCCGAA
50377405 GAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
64 GAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
50377470 GGACTAAGTCCCGAAGAGCATTCATGCTAGT
129 GGACTAAGTCCCGAAGAGCATTCATGCTAGT
50377501 GATGTATCCGGGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCC
1 GATGTAT-----CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG-CTAAGTCC
50377566 CGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
60 CGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
50377631 ATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
125 ATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
50377666 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGTGCTAA-ACCTCGAA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG-GCTAAGTCC-CGAA
* * * * *
50377730 GAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
64 GAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
50377775 ATCATGCTGG
Statistics
Matches: 253, Mismatches: 11, Indels: 19
0.89 0.04 0.07
Matches are distributed among these distances:
159 6 0.02
160 90 0.36
161 1 0.00
164 2 0.01
165 153 0.60
166 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (159 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCCCGAAGA
GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
ACTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:50377786 original size:40 final size:40
Alignment explanation
Indices: 50377342--50377774 Score: 620
Period size: 40 Copynumber: 10.7 Consensus size: 40
50377332 AGGTCTCGAC
*
50377342 GATG-ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
50377381 GATGT-TCCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGT
1 GATGTAT-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
50377421 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
50377461 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
50377501 GATGTATCCGGGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTAT-----CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
50377546 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
50377586 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
50377626 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
50377666 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
50377706 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * *
50377746 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
50377775 ATCATGCTGG
Statistics
Matches: 355, Mismatches: 29, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
39 6 0.02
40 308 0.87
41 3 0.01
45 38 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:50381246 original size:96 final size:96
Alignment explanation
Indices: 50381130--50381488 Score: 539
Period size: 96 Copynumber: 3.8 Consensus size: 96
50381120 GATAATTGTG
* * * *
50381130 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
50381195 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50381226 ATGTGGAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTATATA
50381290 TATGTGATAAGGCCTAATGGCCGATGTGATGA
65 TATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50381322 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
*
50381385 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
50381416 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGGCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
50381479 ATGTGATAAG
66 ATGTGATAAG
50381489 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
94 93 0.39
95 3 0.01
96 142 0.59
97 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50381501 original size:47 final size:47
Alignment explanation
Indices: 50381130--50381488 Score: 522
Period size: 47 Copynumber: 7.6 Consensus size: 47
50381120 GATAATTGTG
* *
50381130 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50381177 ATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50381226 ATGTGGAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
50381273 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50381322 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50381369 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
50381416 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGGCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50381463 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
50381489 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 21, Indels: 12
0.90 0.07 0.04
Matches are distributed among these distances:
46 2 0.01
47 191 0.67
49 90 0.32
50 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50383944 original size:27 final size:26
Alignment explanation
Indices: 50383892--50383952 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
50383882 CCAGTACAAT
* *
50383892 TTCACTTGGGTCTCAGCCCTTATCAAA
1 TTCAGTTGGGCCTCAGCCCTTATC-AA
*
50383919 TTCAGTTGGGCCT-AGCCCATTCTCAA
1 TTCAGTTGGGCCTCAGCCC-TTATCAA
50383945 TATCAGTT
1 T-TCAGTT
50383953 ACAGTTGGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.34
Consensus pattern (26 bp):
TTCAGTTGGGCCTCAGCCCTTATCAA
Found at i:50387804 original size:27 final size:27
Alignment explanation
Indices: 50387756--50387808 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
50387746 CAGTTACAGT
* *
50387756 TGGGCCTAGCCCATTAATAGAATCAGG
1 TGGGCCTAGCCCAATAACAGAATCAGG
50387783 TGGGCCTAAGCCCAAT-ACAGAATCAG
1 TGGGCCT-AGCCCAATAACAGAATCAG
50387809 TATTAGATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (27 bp):
TGGGCCTAGCCCAATAACAGAATCAGG
Found at i:50395063 original size:22 final size:22
Alignment explanation
Indices: 50395038--50395160 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
50395028 AGGTGTGTAT
50395038 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
50395060 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
*
50395084 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
50395107 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
50395131 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
50395154 ATGTGAT
1 ATGTGAT
50395161 GAATGTGAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 24 0.33
23 16 0.22
24 16 0.22
25 17 0.23
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:50395426 original size:47 final size:47
Alignment explanation
Indices: 50395030--50395423 Score: 646
Period size: 47 Copynumber: 8.4 Consensus size: 47
50395020 GATGTACAAG
*
50395030 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
50395077 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
50395124 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
50395171 GTGTGTATATGTGATAAGGCCTAATGACCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
50395218 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
50395265 GTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
* * *
50395312 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * *
50395359 GTGTGTATATGTGATAAGTCCTAATGGCCAATGTGATGGATATAAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
50395406 GTGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
50395424 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 19, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
46 2 0.01
47 323 0.99
48 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:50397326 original size:40 final size:40
Alignment explanation
Indices: 50397271--50397622 Score: 508
Period size: 40 Copynumber: 8.8 Consensus size: 40
50397261 CAGTATGTTA
50397271 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
50397311 TATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * *
50397351 TATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGCGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
50397391 TAACCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * * *
50397431 TATCTGGACTAGGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
50397471 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
50397511 TATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
50397551 TATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
50397591 TATCCGGGCTAAGCCCCAAAG-GCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50397623 TGGACAAAAT
Statistics
Matches: 274, Mismatches: 38, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
39 11 0.04
40 263 0.96
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:50397404 original size:80 final size:80
Alignment explanation
Indices: 50397269--50397597 Score: 559
Period size: 80 Copynumber: 4.1 Consensus size: 80
50397259 TTCAGTATGT
* * * *
50397269 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGTTAAGTCCCGAAGAG
1 TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAG
50397334 CATTCGTGCTGGTGA
66 CATTCGTGCTGGTGA
* *
50397349 TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGCGATGTAACCGGGCTAAGTCCCGAAGAG
1 TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAG
50397414 CATTCGTGCTGGTGA
66 CATTCGTGCTGGTGA
* *
50397429 TATATCTGGACTAGGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAG
50397494 CATTCGTGCTGGTGA
66 CATTCGTGCTGGTGA
* *
50397509 TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCAGGCTAAGTTCCGAAGAG
1 TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAG
50397574 CATTCGTGCTGGTGA
66 CATTCGTGCTGGTGA
*
50397589 TGTATCCGG
1 TATATCCGG
50397598 GCTAAGCCCC
Statistics
Matches: 234, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 234 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (80 bp):
TATATCCGGACTAGGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTGGTGA
Found at i:50401459 original size:47 final size:47
Alignment explanation
Indices: 50401408--50401801 Score: 662
Period size: 47 Copynumber: 8.4 Consensus size: 47
50401398 GATGTACAAG
50401408 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
50401455 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
50401502 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
50401549 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* **
50401596 GTGTGTATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
50401643 GTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
50401690 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
50401737 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTCAAA
1 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
50401784 GTGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
50401802 TCCCGAAGGG
Statistics
Matches: 328, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 328 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:50401585 original size:22 final size:22
Alignment explanation
Indices: 50401416--50401585 Score: 67
Period size: 22 Copynumber: 7.3 Consensus size: 22
50401406 AGGTGTGTAT
*
50401416 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCAAATGGCCA
* ** *
50401438 ATGTGATGAATGTGAAAGTGTG-TA
1 ATGTGAT-AAGGCCAAA-TG-GCCA
*
50401462 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
* ** *
50401485 ATGTGATGAATGTGAAAGTGTG-TA
1 ATGTGAT-AAGGCCAAA-TG-GCCA
*
50401509 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
* ** *
50401532 ATGTGATGAATGTGAAAGTGTG-TA
1 ATGTGAT-AAGGCCAAA-TG-GCCA
*
50401556 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
50401579 ATGTGAT
1 ATGTGAT
50401586 GAATGTGAAA
Statistics
Matches: 103, Mismatches: 30, Indels: 30
0.63 0.18 0.18
Matches are distributed among these distances:
22 31 0.30
23 24 0.23
24 24 0.23
25 24 0.23
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:50403611 original size:31 final size:31
Alignment explanation
Indices: 50403571--50403685 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
50403561 TTAGTCTTGA
*
50403571 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
50403601 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
50403632 CATATCATTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
50403663 CATATCACTGGGCCGAAACCTTT
1 CATATCACTGGGCCGAAGCCTTT
50403686 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 5 0.07
31 71 0.93
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:50403758 original size:42 final size:42
Alignment explanation
Indices: 50403709--50403842 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
50403699 TGGCCCTTAG
*
50403709 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
50403751 GACCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
50403793 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
50403835 GCCCATTT
1 GCCCATTT
50403843 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:50404026 original size:25 final size:25
Alignment explanation
Indices: 50403990--50404058 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
50403980 CTCCTTTAAT
50403990 AACT-GGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
50404014 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
50404039 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50404059 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.10
25 33 0.80
26 4 0.10
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:50404888 original size:27 final size:27
Alignment explanation
Indices: 50404857--50404921 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
50404847 TACGGAACAT
*
50404857 AAGGGCATATT-CGTCATTTTACCATAC
1 AAGGGC-TATTACGTCACTTTACCATAC
*
50404884 AAGGG-TATTACGTCACTTTACCCTAC
1 AAGGGCTATTACGTCACTTTACCATAC
*
50404910 AGGGGCT-TTACG
1 AAGGGCTATTACG
50404922 GTCTTTTTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
25 4 0.12
26 23 0.70
27 6 0.18
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (27 bp):
AAGGGCTATTACGTCACTTTACCATAC
Found at i:50405006 original size:27 final size:27
Alignment explanation
Indices: 50404976--50405028 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
50404966 GGGTGTTTTG
50404976 GTAAATCTACAAACCAA-GGATATTTCA
1 GTAAATCTACAAACCAATGG-TATTTCA
* * *
50405003 GTAATTTTATAAACCAATGGTATTTC
1 GTAAATCTACAAACCAATGGTATTTC
50405029 CATAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (27 bp):
GTAAATCTACAAACCAATGGTATTTCA
Found at i:50405034 original size:27 final size:27
Alignment explanation
Indices: 50404986--50405094 Score: 78
Period size: 27 Copynumber: 4.0 Consensus size: 27
50404976 GTAAATCTAC
50404986 AAACCAAGGATATTTCAGTAATTTTAT
1 AAACCAAGGATATTTCAGTAATTTTAT
*
50405013 AAACCAATGG-TATTTCCA-TAATTTTTAG
1 AAACCAA-GGATATTT-CAGTAA-TTTTAT
* * * *
50405041 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAA-CCAAGGATATTTCAGTAATTTTAT
* * * **
50405069 AAATCAGGGGTATTTTGGTAATTTTA
1 AAACCAAGGATATTTCAGTAATTTTA
50405095 CAAATTGAGG
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
27 34 0.51
28 22 0.33
29 11 0.16
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGATATTTCAGTAATTTTAT
Done.