Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 154 of 373
Found at i:51116933 original size:49 final size:49
Alignment explanation
Indices: 51116759--51117289 Score: 852
Period size: 49 Copynumber: 11.1 Consensus size: 49
51116749 CCCTTCGGGA
* * * * *
51116759 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51116806 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51116853 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCGTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51116900 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51116949 CTTATCTC--ATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51116996 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51117043 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51117092 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51117139 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51117188 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51117237 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51117286 CTTA
1 CTTA
51117290 CTATCATTTC
Statistics
Matches: 453, Mismatches: 23, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 223 0.49
49 229 0.51
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51116960 original size:96 final size:95
Alignment explanation
Indices: 51116759--51117289 Score: 843
Period size: 96 Copynumber: 5.5 Consensus size: 95
51116749 CCCTTCGGGA
* * * * * * * *
51116759 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
51116823 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* * *
51116853 CTTATCAC-ATATATACACTTTCACATTCATCACATTGGCCGTTAGGCCCTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
51116917 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51116949 CTTATCTC-ATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACGTATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
51117013 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
51117043 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51117108 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
51117139 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
51117204 ACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
51117237 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51117290 CTATCATTTC
Statistics
Matches: 415, Mismatches: 16, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
94 93 0.22
96 231 0.56
98 91 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (95 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51126495 original size:44 final size:42
Alignment explanation
Indices: 51126430--51126546 Score: 112
Period size: 44 Copynumber: 2.8 Consensus size: 42
51126420 ATCTGAGATA
* * * *
51126430 TCGTGTAGGACCGTGTCTGGGACATAGGCCTCG-ATATGATATT
1 TCGTGTAAGACCATGTTTGGGACATAGGCATCGTATAT-A-ATT
* *
51126473 TACGTGTAAGACCATGTTTGGGATATAGGCATCGTATCTAATT
1 T-CGTGTAAGACCATGTTTGGGACATAGGCATCGTATATAATT
* * *
51126516 TTGTGTAAGACCCTG-TTGGGACAGAGGCATC
1 TCGTGTAAGACCATGTTTGGGACATAGGCATC
51126547 AAAACTGAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 14 0.23
42 12 0.19
43 5 0.08
44 28 0.45
45 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTTTGGGACATAGGCATCGTATATAATT
Found at i:51137067 original size:46 final size:46
Alignment explanation
Indices: 51137000--51137227 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
51136990 AGTGTGCTTT
* * *
51137000 CTGATATGAAGTGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
51137046 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
51137092 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
51137138 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
51137184 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
51137228 TCATGTCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:51142705 original size:8 final size:8
Alignment explanation
Indices: 51142692--51142719 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51142682 CCCTCGATAA
51142692 GAATTAAT
1 GAATTAAT
51142700 GAATTAAT
1 GAATTAAT
51142708 GAATTAAT
1 GAATTAAT
51142716 GAAT
1 GAAT
51142720 CGTACACCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (8 bp):
GAATTAAT
Found at i:51143785 original size:21 final size:21
Alignment explanation
Indices: 51143759--51143801 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51143749 CTAGCATGGA
*
51143759 CGTGTCCTAGGGTCACACGGG
1 CGTGTCCCAGGGTCACACGGG
*
51143780 CGTGTCCCAGGGTCACATGGG
1 CGTGTCCCAGGGTCACACGGG
51143801 C
1 C
51143802 ATGTGAGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.30, G:0.37, T:0.19
Consensus pattern (21 bp):
CGTGTCCCAGGGTCACACGGG
Found at i:51144344 original size:46 final size:46
Alignment explanation
Indices: 51144158--51144364 Score: 168
Period size: 45 Copynumber: 4.5 Consensus size: 46
51144148 CAAAGAATTT
* * * * ** *
51144158 CATAGCATCTTTCAACCATGATCTTATTTA-TTTCCGTCATAATGC
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTTCCGTCATGTTTC
* * * *
51144203 CATAGTGTCTTTCAACTATGGTCATATTCATTTT-TGTCATGTTCC
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTTCCGTCATGTTTC
* * * * * * * * *
51144248 CATAGTGTCTTTCAATTATGTTTTTATTTATTTTCCATCCTACTAT-
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTTCCGTCAT-GTTTC
* * *
51144294 CATAGCATCTTTCAACTATGGTCCTATTCATTTTCCGTCTTGTTTC
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTTCCGTCATGTTTC
*
51144340 CATAGTATCTTTCAAATATGGTCTT
1 CATAGTATCTTTCAACTATGGTCTT
51144365 CCACGTTTGA
Statistics
Matches: 123, Mismatches: 35, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
45 62 0.50
46 60 0.49
47 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.46
Consensus pattern (46 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATTTTCCGTCATGTTTC
Found at i:51144457 original size:45 final size:45
Alignment explanation
Indices: 51144337--51144458 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 45
51144327 TCCGTCTTGT
* ** * *
51144337 TTCCATAGTATCTTTCAAATATGGTCTTCCACGTTTGAATCATGA
1 TTCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTGAATCATGA
* *
51144382 TGT-CATAGCATTTTTCAGCTATGGTCTTACTCGTTTGAATCGTGA
1 T-TCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTGAATCATGA
*
51144427 TTCCATAGCGTCTTTCAGCTATGGTCTTACTC
1 TTCCATAGCATCTTTCAGCTATGGTCTTACTC
51144459 ATATTTCAAC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 64 0.97
46 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (45 bp):
TTCCATAGCATCTTTCAGCTATGGTCTTACTCGTTTGAATCATGA
Found at i:51151150 original size:40 final size:40
Alignment explanation
Indices: 51151049--51151269 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
51151039 TATTCGAATA
* * *
51151049 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
51151090 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
51151130 ATATCCGGGCCAAAACCCGAAAGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
51151170 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
51151210 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
51151249 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
51151270 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 94 0.62
41 28 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:51159228 original size:40 final size:40
Alignment explanation
Indices: 51159123--51159343 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
51159113 TATTCGAATG
* * * *
51159123 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * * *
51159164 ATATCCGGACTAAGATCCGGAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
51159204 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
51159244 ATATCCGAGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
51159284 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
51159323 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
51159344 ATACTTGGGT
Statistics
Matches: 148, Mismatches: 31, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 93 0.63
41 26 0.18
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:51168473 original size:26 final size:28
Alignment explanation
Indices: 51168436--51168489 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
51168426 ATCATAGCAC
*
51168436 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
51168463 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
51168490 TTTTGGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:51169774 original size:17 final size:19
Alignment explanation
Indices: 51169747--51169785 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
51169737 GTATTCGGAC
51169747 AGAGAGAAAAATG-CCAAA
1 AGAGAGAAAAATGACCAAA
51169765 AGAG-GAAAAATGACCAAA
1 AGAGAGAAAAATGACCAAA
51169783 AGA
1 AGA
51169786 AAAACTGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.62, C:0.10, G:0.23, T:0.05
Consensus pattern (19 bp):
AGAGAGAAAAATGACCAAA
Found at i:51169933 original size:24 final size:24
Alignment explanation
Indices: 51169887--51169933 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
51169877 TCTAATTCCT
* *
51169887 TGATTTTCTCCCAATATCTCTCCC
1 TGATTCTCTCCCAATATCACTCCC
51169911 TGATTCTCTCCACAA-ATCACTCC
1 TGATTCTCTCC-CAATATCACTCC
51169934 AACATCCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TGATTCTCTCCCAATATCACTCCC
Found at i:51174048 original size:26 final size:28
Alignment explanation
Indices: 51174011--51174064 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
51174001 ATCATAGCAC
*
51174011 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
51174038 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
51174065 TTTTGGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:51175339 original size:15 final size:15
Alignment explanation
Indices: 51175316--51175360 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
51175306 AGTGTATTCG
*
51175316 GCCAGAGAGAAAAAT
1 GCCAAAGAGAAAAAT
51175331 GCCAAAGAGGAAAAAT
1 GCCAAAGA-GAAAAAT
51175347 GACCAAA-AGAAAAA
1 G-CCAAAGAGAAAAA
51175361 CCGAACAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 13 0.48
16 9 0.33
17 5 0.19
ACGTcount: A:0.60, C:0.13, G:0.22, T:0.04
Consensus pattern (15 bp):
GCCAAAGAGAAAAAT
Found at i:51175345 original size:16 final size:18
Alignment explanation
Indices: 51175319--51175353 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
51175309 GTATTCGGCC
51175319 AGAGAGAAAAATG-CCAA
1 AGAGAGAAAAATGACCAA
51175336 AGAG-GAAAAATGACCAA
1 AGAGAGAAAAATGACCAA
51175353 A
1 A
51175354 AGAAAAACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.60, C:0.11, G:0.23, T:0.06
Consensus pattern (18 bp):
AGAGAGAAAAATGACCAA
Found at i:51175360 original size:16 final size:16
Alignment explanation
Indices: 51175319--51175360 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
51175309 GTATTCGGCC
51175319 AGAGAGAAAAATGCCAA
1 AGAGA-AAAAATGCCAA
*
51175336 AGAGGAAAAATGACCAA
1 AGAGAAAAAATG-CCAA
51175353 A-AGAAAAA
1 AGAGAAAAA
51175361 CCGAACAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.64, C:0.10, G:0.21, T:0.05
Consensus pattern (16 bp):
AGAGAAAAAATGCCAA
Found at i:51179315 original size:39 final size:39
Alignment explanation
Indices: 51179207--51179334 Score: 168
Period size: 39 Copynumber: 3.3 Consensus size: 39
51179197 TGCATGGTAT
**
51179207 TGGAAAAATATCCGGACTTGAAGTCCATAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
51179246 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * ** *
51179285 TGGAAATATATCCGGACTTAAAGTTTGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
51179324 TGGAAAAATAT
1 TGGAAAAATAT
51179335 TCGGGCTAAG
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.03
39 78 0.98
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:51179363 original size:39 final size:39
Alignment explanation
Indices: 51179331--51179585 Score: 375
Period size: 39 Copynumber: 6.5 Consensus size: 39
51179321 TGCTGGAAAA
* *
51179331 ATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
51179370 ATATCCAGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * *
51179409 ATATCTGGGCTAAGTCCTGAAGGCATTCGTACTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
51179448 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
51179487 ATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
51179526 ATAACCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
51179565 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
51179586 CATGCTTTGT
Statistics
Matches: 196, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 188 0.96
40 1 0.01
41 7 0.04
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:51179413 original size:117 final size:117
Alignment explanation
Indices: 51179282--51179551 Score: 310
Period size: 117 Copynumber: 2.3 Consensus size: 117
51179272 GCAGGCTTTA
* * * * * *
51179282 TGCTGGAAATATATCCGGACTTAAAGT-TTGCAGGC-TAAGTGCTGGAAAAATATTCGGGCTAAG
1 TGCTGGTATTATATCCGGAC-T-AAGTCCTGAAGGCATAAGTACTGGAAAAATATCCGGGCTAAG
* **
51179345 TCCCGAAGGCATTCGTGCTGGTGTTATATCCAGGCTAAGTCCTGAAGGCATTCG
64 TCCCGAAGGCATTCGTGCTGGTGCTATATCCAGGCTAAGTCCCAAAGGCATTCG
* * ** * **
51179399 TGCTGGTATTATATCTGGGCTAAGTCCTGAAGGCATTCGTACTGGTATTATATCCGGGCTAAGTC
1 TGCTGGTATTATATCCGGACTAAGTCCTGAAGGCATAAGTACTGGAAAAATATCCGGGCTAAGTC
*
51179464 CCGAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAGTCCCAAAGGCATTCG
66 CCGAAGGCATTCGTGCTGGTGCTATATCCAGGCTAAGTCCCAAAGGCATTCG
* * * **
51179516 TGCTGGTGTTATAACCGGGCTAAGTCCCAAAGGCAT
1 TGCTGGTATTATATCCGGACTAAGTCCTGAAGGCAT
51179552 TCGTGCTGGT
Statistics
Matches: 129, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
115 4 0.03
116 7 0.05
117 118 0.91
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (117 bp):
TGCTGGTATTATATCCGGACTAAGTCCTGAAGGCATAAGTACTGGAAAAATATCCGGGCTAAGTC
CCGAAGGCATTCGTGCTGGTGCTATATCCAGGCTAAGTCCCAAAGGCATTCG
Found at i:51183451 original size:26 final size:27
Alignment explanation
Indices: 51183415--51183485 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 27
51183405 ATACCAAAAA
* * * *
51183415 CGCAACAAAGCTGCTAGTAATA-TCAT
1 CGCAGCAAAGCTGCCAGTAACAGTAAT
51183441 CGCAGCAAAGCTGCCAGTAACAGTAAT
1 CGCAGCAAAGCTGCCAGTAACAGTAAT
*
51183468 -GCAGCAAAGCTACCAGTA
1 CGCAGCAAAGCTGCCAGTA
51183486 TTAGTATATG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 36 0.92
27 3 0.08
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (27 bp):
CGCAGCAAAGCTGCCAGTAACAGTAAT
Found at i:51183660 original size:26 final size:28
Alignment explanation
Indices: 51183623--51183676 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
51183613 ATCATAGCAC
*
51183623 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
51183650 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
51183677 TTTTGGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:51184961 original size:16 final size:18
Alignment explanation
Indices: 51184937--51184977 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
51184927 ATTCGGCCAG
51184937 AGAGAAAAA-TG-CCAAA
1 AGAGAAAAATTGACCAAA
*
51184953 AGAGGAAAATTGACCAAA
1 AGAGAAAAATTGACCAAA
51184971 AGA-AAAA
1 AGAGAAAA
51184978 CTGAACAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 8 0.38
17 5 0.24
18 8 0.38
ACGTcount: A:0.63, C:0.10, G:0.20, T:0.07
Consensus pattern (18 bp):
AGAGAAAAATTGACCAAA
Found at i:51184969 original size:18 final size:18
Alignment explanation
Indices: 51184935--51184973 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
51184925 GTATTCGGCC
51184935 AGAGAGAAAAATGCCAAA
1 AGAGAGAAAAATGCCAAA
*
51184953 AGAG-GAAAATTGACCAAA
1 AGAGAGAAAAATG-CCAAA
51184971 AGA
1 AGA
51184974 AAAACTGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.59, C:0.10, G:0.23, T:0.08
Consensus pattern (18 bp):
AGAGAGAAAAATGCCAAA
Found at i:51186071 original size:17 final size:19
Alignment explanation
Indices: 51186044--51186082 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
51186034 GTATTCGGCC
51186044 AGAGAGAAAAATG-CCAAA
1 AGAGAGAAAAATGACCAAA
51186062 AGAG-GAAAAATGACCAAA
1 AGAGAGAAAAATGACCAAA
51186080 AGA
1 AGA
51186083 AAAACCGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.62, C:0.10, G:0.23, T:0.05
Consensus pattern (19 bp):
AGAGAGAAAAATGACCAAA
Found at i:51186229 original size:24 final size:24
Alignment explanation
Indices: 51186183--51186229 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
51186173 TCTAATTCCT
* *
51186183 TGATTTTCTCCCAATATCTCTCCC
1 TGATTCTCTCCCAATATCACTCCC
51186207 TGATTCTCTCCACAA-ATCACTCC
1 TGATTCTCTCC-CAATATCACTCC
51186230 AACATTACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TGATTCTCTCCCAATATCACTCCC
Found at i:51195033 original size:33 final size:28
Alignment explanation
Indices: 51194972--51195029 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
51194962 TTTCATTCAC
51194972 TATCTCATTTAGCAATTCAATAAAAACA
1 TATCTCATTTAGCAATTCAATAAAAACA
51195000 TATCTCATTTAGCAATTCAATAAAAACA
1 TATCTCATTTAGCAATTCAATAAAAACA
51195028 TA
1 TA
51195030 ACATGACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (28 bp):
TATCTCATTTAGCAATTCAATAAAAACA
Found at i:51198127 original size:12 final size:12
Alignment explanation
Indices: 51198110--51198138 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51198100 CCACACACGC
51198110 CCGTGTGCTAGG
1 CCGTGTGCTAGG
51198122 CCGTGTGCTAGG
1 CCGTGTGCTAGG
51198134 CCGTG
1 CCGTG
51198139 CTAAACCTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.41, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:51216340 original size:16 final size:16
Alignment explanation
Indices: 51216309--51216367 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
51216299 GTAGCCAAAC
* *
51216309 TTTCGACTTTTTGGCA
1 TTTCGGCTTTTCGGCA
*
51216325 TTTTGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
51216341 TTTCGGCTTTTCTGCA
1 TTTCGGCTTTTCGGCA
51216357 TTTCGGCTTTT
1 TTTCGGCTTTT
51216368 GTTGATACAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.07, C:0.20, G:0.20, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:51216344 original size:8 final size:8
Alignment explanation
Indices: 51216321--51216363 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
51216311 TCGACTTTTT
*
51216321 GGCATTTT
1 GGCATTTC
*
51216329 GGCTTTTC
1 GGCATTTC
51216337 GGCATTTC
1 GGCATTTC
*
51216345 GGCTTTTC
1 GGCATTTC
*
51216353 TGCATTTC
1 GGCATTTC
51216361 GGC
1 GGC
51216364 TTTTGTTGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.07, C:0.23, G:0.26, T:0.44
Consensus pattern (8 bp):
GGCATTTC
Found at i:51225874 original size:26 final size:26
Alignment explanation
Indices: 51225845--51225926 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
51225835 TGATAAAAAT
51225845 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51225871 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51225897 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51225923 TGAT
1 TGAT
51225927 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51234484 original size:26 final size:26
Alignment explanation
Indices: 51234455--51234507 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
51234445 TTTACAGTTT
51234455 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
51234481 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
51234507 T
1 T
51234508 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:51241231 original size:19 final size:19
Alignment explanation
Indices: 51241207--51241254 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
51241197 AAGGCTTTAT
51241207 ACGCCCGTGTGCTAGGGAC
1 ACGCCCGTGTGCTAGGGAC
51241226 ACGCCCGTGTGCTAGGGAC
1 ACGCCCGTGTGCTAGGGAC
51241245 ACGCCCGTGT
1 ACGCCCGTGT
51241255 CCCAAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.15, C:0.33, G:0.35, T:0.17
Consensus pattern (19 bp):
ACGCCCGTGTGCTAGGGAC
Found at i:51246982 original size:68 final size:68
Alignment explanation
Indices: 51246835--51246990 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
51246825 AGCCGATTTG
* * * * *
51246835 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
51246900 TATC
65 TATA
* *
51246904 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
51246966 ATATAGTA
62 ATATA-TA
51246974 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
51246991 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:51254486 original size:68 final size:67
Alignment explanation
Indices: 51254340--51254495 Score: 158
Period size: 68 Copynumber: 2.3 Consensus size: 67
51254330 AGCCGATTTG
* * *
51254340 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTCATTCAC-T-GAATCACACATGTGACCTAGCTACATA
*
51254405 TATC
64 TATA
*
51254409 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATTC-C-GTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-T-CATTCACTGAATCACACATGTGACCTAGCTAC-
51254471 ATATAGTA
61 ATATA-TA
51254479 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
51254496 ACACATGATG
Statistics
Matches: 75, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
67 1 0.01
68 34 0.45
69 7 0.09
70 5 0.07
71 24 0.32
72 4 0.05
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.36
Consensus pattern (67 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTCATTCACTGAATCACACATGTGACCTAGCTACATATA
TA
Found at i:51261424 original size:47 final size:47
Alignment explanation
Indices: 51261354--51261526 Score: 226
Period size: 47 Copynumber: 3.7 Consensus size: 47
51261344 ACCCATATGT
51261354 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATGTAAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGAGATGTAAGC
* * * *
51261402 CAGTGTAA-AACATGTCTAGGACAT-GCATCGGCTACGAGATGATAA-T
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGATG-TAAGC
* * *
51261448 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGTAAGC
*
51261495 TAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
51261527 GCACCTTACC
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
45 2 0.02
46 23 0.21
47 67 0.62
48 16 0.15
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGTAAGC
Found at i:51261463 original size:94 final size:95
Alignment explanation
Indices: 51261353--51261528 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 95
51261343 AACCCATATG
*
51261353 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATGTAAGCCAGTGTAA-AACATGT
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGAGATATAAGCCAGTGTAAGAACATGT
51261417 CTAGGACAT-GCATCGGCTACGAGATGATAA
65 CTAGGACATGGCATCGGCTACGAGATGATAA
* * * *
51261447 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCTAGTGTAAGACCATGTC
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATAAGCCAGTGTAAGAACATGTC
*
51261512 TGGGACATGGCATCGGC
66 TAGGACATGGCATCGGC
51261529 ACCTTACCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
93 18 0.24
94 48 0.65
95 8 0.11
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATAAGCCAGTGTAAGAACATGTC
TAGGACATGGCATCGGCTACGAGATGATAA
Found at i:51264754 original size:48 final size:48
Alignment explanation
Indices: 51264683--51264932 Score: 233
Period size: 48 Copynumber: 5.2 Consensus size: 48
51264673 TAAAGTACCA
*
51264683 ATGCCATGTCCCAGACATGGTCTTACATGAATC-CACATATCATA-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACATG-AGCACACATATCA-ACGCCG
**
51264731 ATGCCATGTCCCAGACATGGTCTTACACTG-GCACACATATCAACATCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAGCACACATATCAACGCCG
* * * * *
51264779 ATGCCATGCCCCAGACATGGTCTTACAT-AGGCACATATATTAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATGA-GCACACATATCAACGCCG
* * * * *
51264827 ATGCTATGTTCCAGACATGGTCTTACA-CAGGCACATATATCAACCCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGA-GCACACATATCAACGCCG
* * * * * *
51264875 ATGCCATGTACCATACATGGTCTTACA-CAGACACATATATCAACACCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAG-CACACATATCAACGCCG
51264923 ATGCCATGTC
1 ATGCCATGTC
51264933 ATCAACACTG
Statistics
Matches: 172, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
47 4 0.02
48 166 0.97
49 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGCACACATATCAACGCCG
Found at i:51264847 original size:96 final size:94
Alignment explanation
Indices: 51264683--51264914 Score: 288
Period size: 96 Copynumber: 2.4 Consensus size: 94
51264673 TAAAGTACCA
51264683 ATGCCATGTCCCAGACATGGTCTTACAT-GAATCCACATATCA-TAGCCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACATAG-A--CACATAT-ATTAGCCGATGCCATGTCCCAGA
* *
51264746 CATGGTCTTACACTGGCACACATATCAACATCG
62 CATGGTCTTACACAGGCACACATATCAACACCG
* * * * *
51264779 ATGCCATGCCCCAGACATGGTCTTACATAGGCACATATATTAATGCTGATGCTATGTTCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATAGACACATATATT-A-GCCGATGCCATGTCCCAGACA
* *
51264844 TGGTCTTACACAGGCACATATATCAACCCCG
64 TGGTCTTACACAGGCACACATATCAACACCG
* * *
51264875 ATGCCATGTACCATACATGGTCTTACACAGACACATATAT
1 ATGCCATGTCCCAGACATGGTCTTACATAGACACATATAT
51264915 CAACACCAAT
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
93 1 0.01
94 8 0.07
95 1 0.01
96 107 0.91
97 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACATAGACACATATATTAGCCGATGCCATGTCCCAGACATG
GTCTTACACAGGCACACATATCAACACCG
Found at i:51288872 original size:11 final size:11
Alignment explanation
Indices: 51288856--51288898 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
51288846 TAAAATCTAT
51288856 TATTAAAATAA
1 TATTAAAATAA
51288867 TATT--AA-AA
1 TATTAAAATAA
51288875 TATTAAAATAA
1 TATTAAAATAA
51288886 TATTAAAATAA
1 TATTAAAATAA
51288897 TA
1 TA
51288899 AATTATGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 6 0.21
9 2 0.07
10 2 0.07
11 19 0.66
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TATTAAAATAA
Found at i:51288880 original size:19 final size:19
Alignment explanation
Indices: 51288856--51288900 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
51288846 TAAAATCTAT
51288856 TATTAAAATAATATTAAAA
1 TATTAAAATAATATTAAAA
51288875 TATTAAAATAATATTAAAA
1 TATTAAAATAATATTAAAA
*
51288894 TAATAAA
1 TATTAAA
51288901 TTATGTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TATTAAAATAATATTAAAA
Found at i:51289503 original size:19 final size:21
Alignment explanation
Indices: 51289466--51289504 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
51289456 CTCTTCTACT
*
51289466 TTCTTTTATGTGTTTTCTATC
1 TTCTTTTATGTGTTCTCTATC
51289487 TTCTTTT-T-TGTTCTCTAT
1 TTCTTTTATGTGTTCTCTAT
51289505 AAGCTCCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 1 0.06
21 7 0.41
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (21 bp):
TTCTTTTATGTGTTCTCTATC
Found at i:51291263 original size:25 final size:25
Alignment explanation
Indices: 51291222--51291280 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
51291212 AAACTTACCA
* *
51291222 ATTCATG-CTTGATTAGAATCAACC
1 ATTCATGCCTTCACTAGAATCAACC
* *
51291246 ATTCATGCCTTCACTAGAATTAAGC
1 ATTCATGCCTTCACTAGAATCAACC
*
51291271 ATACATGCCT
1 ATTCATGCCT
51291281 CGAATAGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 7 0.24
25 22 0.76
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (25 bp):
ATTCATGCCTTCACTAGAATCAACC
Found at i:51299753 original size:47 final size:46
Alignment explanation
Indices: 51299677--51299813 Score: 154
Period size: 47 Copynumber: 3.0 Consensus size: 46
51299667 GTAACCCGCC
*
51299677 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA
1 CATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA
** * * *
51299723 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TC
1 CATAACT-GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTA
*
51299770 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT
1 CATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT
51299814 AATCATATCG
Statistics
Matches: 73, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.05
46 31 0.42
47 32 0.44
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA
Found at i:51306312 original size:17 final size:17
Alignment explanation
Indices: 51306290--51306332 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
51306280 GGGGCCATGT
51306290 GGGCCCAATGGGCCTAC
1 GGGCCCAATGGGCCTAC
51306307 GGGCCCAATGGGCCTAC
1 GGGCCCAATGGGCCTAC
51306324 GGGCCCAAT
1 GGGCCCAAT
51306333 TGGATAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (17 bp):
GGGCCCAATGGGCCTAC
Found at i:51306528 original size:27 final size:27
Alignment explanation
Indices: 51306504--51306790 Score: 319
Period size: 27 Copynumber: 10.6 Consensus size: 27
51306494 TTAGTTTACG
* **
51306504 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
51306531 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
51306558 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
51306585 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
51306612 AAATTATC-AAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
51306638 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
51306665 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
51306692 AAATTACCAAAATACCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
51306719 AAATTACTGAAAATA-CCCTCGACTTGTA
1 AAATTAC-CAAAATACCCCT-GGTTTGTA
** **
51306747 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
51306774 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
51306791 TTGATTTATA
Statistics
Matches: 223, Mismatches: 33, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
26 24 0.11
27 179 0.80
28 20 0.09
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:51306679 original size:107 final size:108
Alignment explanation
Indices: 51306530--51306800 Score: 316
Period size: 107 Copynumber: 2.5 Consensus size: 108
51306520 CTTGGTTTAC
*
51306530 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATCACCAA
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTAC-AAAATACCCTTGGTTTATAAAATCACCAA
* * *
51306595 AATACCCCTGGTTTGTAAAATTA-T-CAAATACCCCTAG-TTTGT
65 AATACCCCTGATTTGTAAAATTACTGAAAATA-CCCTAGACTTGT
* * * *
51306637 AAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CAAAATACCCTTGGTTTATAAAATCACCAA
* * *
51306702 AATACCTCTGATTTGTGAAATTACTGAAAATACCCTCGACTTGT
65 AATACCCCTGATTTGTAAAATTACTGAAAATACCCTAGACTTGT
** ** * *
51306746 AAAATTATTAAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATA
1 AAAATTACCAAAATACCCCT-GGTTTGTAAAATTA-CAAAATACCCTTGGTTTATA
51306801 GAATTATCGT
Statistics
Matches: 138, Mismatches: 21, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
107 78 0.57
108 11 0.08
109 49 0.36
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (108 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAATACCCTTGGTTTATAAAATCACCAAA
ATACCCCTGATTTGTAAAATTACTGAAAATACCCTAGACTTGT
Found at i:51306843 original size:27 final size:27
Alignment explanation
Indices: 51306719--51306844 Score: 92
Period size: 27 Copynumber: 4.6 Consensus size: 27
51306709 CTGATTTGTG
* *
51306719 AAATTACTGAAAATACCCTCGACTTGTA
1 AAATTATTG-AAATACCCTCGACTTATA
* *
51306747 AAATTATTAAAATACCCTCGACTTGTA
1 AAATTATTGAAATACCCTCGACTTATA
** * *
51306774 AAATTA-CCAAAGTACCCTTGATTTATA
1 AAATTATTGAAA-TACCCTCGACTTATA
* * *** * *
51306801 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTATTGAAATACCCTCGACTTATA
51306828 AAATTATTGAAATACCC
1 AAATTATTGAAATACCC
51306845 CTATAGGGTA
Statistics
Matches: 77, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
26 3 0.04
27 66 0.86
28 8 0.10
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGACTTATA
Found at i:51306859 original size:27 final size:27
Alignment explanation
Indices: 51306836--51307258 Score: 560
Period size: 27 Copynumber: 15.7 Consensus size: 27
51306826 CAAAATTATT
*
51306836 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51306863 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
51306890 GAAATACTCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51306917 GAAATACCCTTATAGGGT-GAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
51306943 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51306970 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51306997 GAAATACCCCTATAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
51307024 GAAATACTCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51307051 GAAATACCCCTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51307078 GAAATACCCCTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51307105 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51307132 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
51307159 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51307186 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51307213 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
51307240 GAGATACCCTTGTGGGGTA
1 GAAATACCCCTGTAGGGTA
51307259 AAATGGTAAT
Statistics
Matches: 354, Mismatches: 41, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 22 0.06
27 332 0.94
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:51307616 original size:31 final size:32
Alignment explanation
Indices: 51307578--51307639 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
51307568 CTCGCTGCAA
* *
51307578 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
51307609 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
51307640 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:51307802 original size:6 final size:6
Alignment explanation
Indices: 51307771--51307827 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
51307761 TTGCATTCAC
* *
51307771 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
51307819 AGTTCTG AT
1 A-TTCTG AT
51307828 AATGTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 35 0.83
7 4 0.10
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:51310652 original size:20 final size:20
Alignment explanation
Indices: 51310623--51310661 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51310613 AAATTTGGTA
* *
51310623 GCTAGTACAAATTTAATTCG
1 GCTAGGACAAAATTAATTCG
51310643 GCTAGGACAAAATTAATTC
1 GCTAGGACAAAATTAATTC
51310662 AACATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
GCTAGGACAAAATTAATTCG
Found at i:51313945 original size:24 final size:24
Alignment explanation
Indices: 51313918--51313969 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
51313908 GATCACTTGT
* *
51313918 TTTTCTTTCT-TTTTCTTACTTTTC
1 TTTTCTTTCTCTTTT-TCACTCTTC
51313942 TTTTCTTTCTCTTTTTCACTCTTC
1 TTTTCTTTCTCTTTTTCACTCTTC
51313966 TTTT
1 TTTT
51313970 TTTGCTCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTCTTTCTCTTTTTCACTCTTC
Found at i:51316096 original size:20 final size:20
Alignment explanation
Indices: 51316067--51316114 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
51316057 TAAGAGCCAT
*
51316067 ACGCCTGTGTGGCTTGGGAC
1 ACGCCCGTGTGGCTTGGGAC
51316087 ACGCCCGTGTGGCTTGGGAC
1 ACGCCCGTGTGGCTTGGGAC
51316107 ACGCCCGT
1 ACGCCCGT
51316115 ATGGGTAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.10, C:0.31, G:0.38, T:0.21
Consensus pattern (20 bp):
ACGCCCGTGTGGCTTGGGAC
Found at i:51323191 original size:20 final size:20
Alignment explanation
Indices: 51323166--51323204 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
51323156 AAATTCGGCA
*
51323166 GCTAGGACAAATTTAATTCG
1 GCTAGGACAAAATTAATTCG
51323186 GCTAGGACAAAATTAATTC
1 GCTAGGACAAAATTAATTC
51323205 AACATATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (20 bp):
GCTAGGACAAAATTAATTCG
Found at i:51340040 original size:11 final size:10
Alignment explanation
Indices: 51340022--51340051 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
51340012 TGGTGAAAAA
51340022 TATTATTATT
1 TATTATTATT
51340032 TATTTATTATT
1 TA-TTATTATT
51340043 TATTATTAT
1 TATTATTAT
51340052 GTTTTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTATTATT
Found at i:51343215 original size:35 final size:35
Alignment explanation
Indices: 51343176--51343292 Score: 182
Period size: 35 Copynumber: 3.3 Consensus size: 35
51343166 AAGAAGTATT
51343176 GGTGTTGTGGCGAGATGTTAAATGAATGAGATATC
1 GGTGTTGTGGCGAGATGTTAAATGAATGAGATATC
*
51343211 GGTGTTGTGGC-AGGATGCTAAATGAATGAGATATC
1 GGTGTTGTGGCGA-GATGTTAAATGAATGAGATATC
* *
51343246 GGTGTTGTGGCGACATGTTAAATGAATGAGATATT
1 GGTGTTGTGGCGAGATGTTAAATGAATGAGATATC
*
51343281 GATGTTGTGGCG
1 GGTGTTGTGGCG
51343293 GAATTGTAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
34 1 0.01
35 73 0.97
36 1 0.01
ACGTcount: A:0.26, C:0.07, G:0.35, T:0.32
Consensus pattern (35 bp):
GGTGTTGTGGCGAGATGTTAAATGAATGAGATATC
Found at i:51344926 original size:46 final size:44
Alignment explanation
Indices: 51344876--51344988 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 44
51344866 GACGAGTGCT
51344876 AGTGTAAGACATGTCTGGGACATGCACCAGCCT-CGAGACATAAGTC
1 AGTGTAAGACATGTCTGGGACATGCACC-GCCTACGAG--ATAAGTC
* * * **
51344922 AGTGTAAGACATGTCTGGGACATGTATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCACCGCCTACGAGATAAGTC
51344966 AGTGTAAGACCATGTCTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
51344989 CTACATTGGC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 14 0.23
45 16 0.27
46 30 0.50
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCACCGCCTACGAGATAAGTC
Found at i:51347656 original size:21 final size:21
Alignment explanation
Indices: 51347630--51347711 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
51347620 CAAAAGCAGT
51347630 ATACGACACATAAAGTGCCTA
1 ATACGACACATAAAGTGCCTA
* * * * *
51347651 AAACGACGCATGAGGTGCCTG
1 ATACGACACATAAAGTGCCTA
** *
51347672 ATACGACACACGAGGTGCCTGA
1 ATACGACACATAAAGTGCCT-A
51347694 TATACGACACATAAAGTG
1 -ATACGACACATAAAGTG
51347712 TCTGATCGGT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
21 33 0.70
23 14 0.30
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTA
Found at i:51348822 original size:10 final size:10
Alignment explanation
Indices: 51348807--51348831 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51348797 TTATCACATA
51348807 AAAATCTTAT
1 AAAATCTTAT
51348817 AAAATCTTAT
1 AAAATCTTAT
51348827 AAAAT
1 AAAAT
51348832 AATTATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATCTTAT
Found at i:51348950 original size:15 final size:16
Alignment explanation
Indices: 51348930--51348960 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51348920 TACAATTGTC
51348930 CACATGT-ATTTATTA
1 CACATGTAATTTATTA
51348945 CACATGTAATTTATTA
1 CACATGTAATTTATTA
51348961 ACACCATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (16 bp):
CACATGTAATTTATTA
Found at i:51349005 original size:5 final size:5
Alignment explanation
Indices: 51348997--51349083 Score: 113
Period size: 5 Copynumber: 17.4 Consensus size: 5
51348987 TTTATTTATA
51348997 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * * *
51349047 ATAAT TTAAA AT-AT GATAAA ATAAA ATAAT TTAAT AT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT AT
51349084 TTAACCAACA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
4 1 0.01
5 70 0.97
6 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:51354101 original size:15 final size:15
Alignment explanation
Indices: 51354081--51354136 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
51354071 GTATCTTGGG
*
51354081 TTTCTTTATTCTAGA
1 TTTCTTTATTCTGGA
*
51354096 TTTCTTTATTTTGGA
1 TTTCTTTATTCTGGA
*
51354111 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
51354126 TTTCTTTATTC
1 TTTCTTTATTC
51354137 GGTTTCCTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.03
15 31 0.91
16 2 0.06
ACGTcount: A:0.14, C:0.14, G:0.09, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51359481 original size:35 final size:35
Alignment explanation
Indices: 51359430--51359579 Score: 128
Period size: 35 Copynumber: 4.3 Consensus size: 35
51359420 GATGTTACAA
*
51359430 GGATATTAAATGAATGAAGTATCGGAGTTGTGGCG
1 GGATGTTAAATGAATGAAGTATCGGAGTTGTGGCG
*
51359465 GGATGTTAAATGAATGAGATGT-T-GGTGTTGTGGCG
1 GGATGTTAAATGAATGA-A-GTATCGGAGTTGTGGCG
** * *
51359500 GGATACTAAATGAATG-AGATATCGGTA-TTATGTCG
1 GGATGTTAAATGAATGAAG-TATCGG-AGTTGTGGCG
* * * * **
51359535 GGATGTTAAATAAATGAAATATCGGTGTTGAGGTA
1 GGATGTTAAATGAATGAAGTATCGGAGTTGTGGCG
51359570 GGATGTTAAA
1 GGATGTTAAA
51359580 CAATTGATAT
Statistics
Matches: 90, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
32 1 0.01
33 2 0.02
34 1 0.01
35 81 0.90
36 3 0.03
37 2 0.02
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.31
Consensus pattern (35 bp):
GGATGTTAAATGAATGAAGTATCGGAGTTGTGGCG
Found at i:51359562 original size:70 final size:70
Alignment explanation
Indices: 51359430--51359564 Score: 175
Period size: 70 Copynumber: 1.9 Consensus size: 70
51359420 GATGTTACAA
* * * * * *
51359430 GGATATTAAATGAATGAAGTATCGGAGTTGTGGCGGGATGTTAAATGAATGAGATGTTGGTGTTG
1 GGATACTAAATGAATGAAGTATCGGAGTTATGGCGGGATGTTAAATAAATGAAATATCGGTGTTG
51359495 TGGCG
66 TGGCG
*
51359500 GGATACTAAATGAATG-AGATATCGGTA-TTATGTCGGGATGTTAAATAAATGAAATATCGGTGT
1 GGATACTAAATGAATGAAG-TATCGG-AGTTATGGCGGGATGTTAAATAAATGAAATATCGGTGT
51359563 TG
64 TG
51359565 AGGTAGGATG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
69 2 0.04
70 53 0.95
71 1 0.02
ACGTcount: A:0.31, C:0.05, G:0.32, T:0.32
Consensus pattern (70 bp):
GGATACTAAATGAATGAAGTATCGGAGTTATGGCGGGATGTTAAATAAATGAAATATCGGTGTTG
TGGCG
Found at i:51360542 original size:17 final size:17
Alignment explanation
Indices: 51360522--51360560 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
51360512 TAAATTTGGT
51360522 TATTTGGAAAGTTAGAC
1 TATTTGGAAAGTTAGAC
51360539 TATTTGGAAAGTTAGAC
1 TATTTGGAAAGTTAGAC
*
51360556 AATTT
1 TATTT
51360561 ACAAGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (17 bp):
TATTTGGAAAGTTAGAC
Found at i:51362019 original size:15 final size:15
Alignment explanation
Indices: 51361999--51362036 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
51361989 AAGTCTCATG
51361999 TGCTATGCTATGTTA
1 TGCTATGCTATGTTA
* *
51362014 TGCTATGTTATTTTA
1 TGCTATGCTATGTTA
51362029 TGCTATGC
1 TGCTATGC
51362037 ACATGACTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.50
Consensus pattern (15 bp):
TGCTATGCTATGTTA
Found at i:51364598 original size:40 final size:40
Alignment explanation
Indices: 51364514--51364697 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
51364504 TTGAATGCTG
* * * *
51364514 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
51364553 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
51364594 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
51364634 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
51364674 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51364698 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:51364651 original size:80 final size:81
Alignment explanation
Indices: 51364514--51364694 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
51364504 TTGAATGCTG
* *
51364514 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
51364578 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
51364594 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
51364655 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
51364674 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
51364695 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:51385500 original size:39 final size:40
Alignment explanation
Indices: 51385457--51385624 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
51385447 CTCGTTCAAG
* * * *
51385457 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
51385496 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
51385536 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
51385576 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
51385616 TGCCTTCGG
1 TGCCTTCGG
51385625 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:51385608 original size:80 final size:80
Alignment explanation
Indices: 51385492--51385677 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
51385482 AGTAACTCAT
* * *
51385492 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
51385556 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
51385571 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
51385635 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
51385652 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
51385678 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:51385637 original size:40 final size:40
Alignment explanation
Indices: 51385494--51385677 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
51385484 TAACTCATAC
* *
51385494 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
51385534 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
51385574 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
51385614 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
51385655 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51385678 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:51405457 original size:45 final size:45
Alignment explanation
Indices: 51405390--51405609 Score: 286
Period size: 45 Copynumber: 5.0 Consensus size: 45
51405380 TATCGTACAG
* *
51405390 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
51405435 TAGTATTCGGGCTTTTGGGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
51405480 TACTATTCGGGCTTTTGGGCCTAGGAGGCTATAATGTCGGTGAGA
1 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
51405525 TACTATTCGAGCTTTCGAGCCTAGCTGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
51405570 TGA-TA-TCGGGC-TTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGA
51405610 ATGAATTCGA
Statistics
Matches: 157, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
42 11 0.07
43 16 0.10
44 5 0.03
45 124 0.79
46 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:51407389 original size:20 final size:20
Alignment explanation
Indices: 51407359--51407404 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
51407349 GGCAATGTTA
51407359 AAGTTGGGAAAAACTATGGT
1 AAGTTGGGAAAAACTATGGT
* * *
51407379 ATGTTGTGAAAGACTATGGT
1 AAGTTGGGAAAAACTATGGT
51407399 AAGTTG
1 AAGTTG
51407405 CAAGTTGGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.30
Consensus pattern (20 bp):
AAGTTGGGAAAAACTATGGT
Found at i:51410029 original size:32 final size:32
Alignment explanation
Indices: 51409988--51410052 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
51409978 GAGGTAAAAC
* *
51409988 CATAAAGTTAGTAGTGAAGTTGATCCCTTGGA
1 CATAAAGTTAGCAGTGAAGTAGATCCCTTGGA
51410020 CATAAAGTTAGCAGTGAAGTAGATCCCTTGGA
1 CATAAAGTTAGCAGTGAAGTAGATCCCTTGGA
51410052 C
1 C
51410053 TTCCCAACCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (32 bp):
CATAAAGTTAGCAGTGAAGTAGATCCCTTGGA
Found at i:51414513 original size:40 final size:40
Alignment explanation
Indices: 51414458--51414592 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
51414448 TATGTGCATA
*
51414458 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
51414498 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
51414538 GCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
51414578 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
51414593 GTTACATCCG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:51442816 original size:45 final size:44
Alignment explanation
Indices: 51442752--51442926 Score: 194
Period size: 45 Copynumber: 4.0 Consensus size: 44
51442742 TATCGTAAAG
* * *
51442752 TACTATTCGGGCCTTTGAGCCTAGTAGGCTAAAATGTCGGTGAGA
1 TACTATTCGGG-CTTCGAGCCTAGCAGGCTAAAATGCCGGTGAGA
* * *
51442797 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
1 TACTATTCGGGC-TTCGAGCCTAGCAGGCTAAAATGCCGGTGAGA
* * * *
51442842 TACAATTCGGGCATTCGAGCCTAGCAGGCTATAATGCTGGTGAAA
1 TACTATTCGGGC-TTCGAGCCTAGCAGGCTAAAATGCCGGTGAGA
*
51442887 TGA-TA-TCGGGCTTCGAGCCTAGCAGGC-GAAATGCCGGTGA
1 T-ACTATTCGGGCTTCGAGCCTAGCAGGCTAAAATGCCGGTGA
51442927 ATGAATTCGA
Statistics
Matches: 114, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
42 10 0.09
43 16 0.14
44 7 0.06
45 80 0.70
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (44 bp):
TACTATTCGGGCTTCGAGCCTAGCAGGCTAAAATGCCGGTGAGA
Found at i:51444418 original size:37 final size:37
Alignment explanation
Indices: 51444359--51444466 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
51444349 AGCTCAGACG
* *
51444359 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
51444396 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
51444433 TAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGG
51444467 GATATATTTC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:51444726 original size:47 final size:47
Alignment explanation
Indices: 51444674--51444961 Score: 477
Period size: 47 Copynumber: 6.1 Consensus size: 47
51444664 CATACATATT
* * * * *
51444674 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
51444721 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
51444768 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
51444815 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
51444862 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * ***
51444909 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
51444956 TCACAT
1 TCACAT
51444962 AAAATCCTAA
Statistics
Matches: 229, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 229 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:51447776 original size:41 final size:40
Alignment explanation
Indices: 51447649--51447793 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
51447639 CTCGCACAAG
* * * * *
51447649 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
51447689 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
51447729 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
51447770 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
51447794 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:51452030 original size:47 final size:47
Alignment explanation
Indices: 51451967--51452056 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
51451957 AGCTCTTACA
* * *
51451967 ATGCCATATCCTAGATATGGTCTTACACATTCTCACATATCAAGCCG
1 ATGCCATATCCCAGATATGGTCTTACACACTATCACATATCAAGCCG
* *
51452014 ATGCCATGTCCCAGATATGGTCTTACACACTATCTCATATCAA
1 ATGCCATATCCCAGATATGGTCTTACACACTATCACATATCAA
51452057 TGCCTTCGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (47 bp):
ATGCCATATCCCAGATATGGTCTTACACACTATCACATATCAAGCCG
Found at i:51452426 original size:40 final size:40
Alignment explanation
Indices: 51452368--51452653 Score: 428
Period size: 40 Copynumber: 7.2 Consensus size: 40
51452358 CCGAATACAC
* * * * * * *
51452368 ATCACCAGCATGATTGCTCTTTGGGACCTAGTCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
51452408 ATCACTAGCACGTATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
51452448 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * *
51452488 ATCACTAGTACGAATGCTCTTCGGAACTTAGCCTGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
51452528 ATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
51452568 ATCACTAGCAAGAATGCTCTTCGGGACTTAGCCTGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
51452608 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
51452648 ATCACT
1 ATCACT
51452654 CTCAATTCTC
Statistics
Matches: 222, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:51455669 original size:27 final size:27
Alignment explanation
Indices: 51455639--51455789 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
51455629 AAATTGTACA
* *
51455639 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
51455666 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * **
51455693 GCACTAAGTGTGCGAATTGACCATACG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
51455720 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
51455748 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
51455775 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
51455790 GATGATTATA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
27 79 0.79
28 21 0.21
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:51455752 original size:82 final size:81
Alignment explanation
Indices: 51455639--51455789 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
51455629 AAATTGTACA
* * * *
51455639 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
51455703 TGCGAATTGACCATACG
65 TGCGAATTGACCATACG
** *
51455720 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
51455785 TGCGA
65 TGCGA
51455790 GATGATTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 46 0.75
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATACG
Found at i:51455795 original size:27 final size:27
Alignment explanation
Indices: 51455638--51455815 Score: 121
Period size: 27 Copynumber: 6.6 Consensus size: 27
51455628 TAAATTGTAC
* ** *
51455638 AGCACTAAGGGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGATGAATATGT
* *
51455665 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGATGAATATGT
*
51455691 ATGCACTAAGTGTGCGA-ATTGACCATACG-
1 A-GCACTAAGTGTGCGAGA-TGA--ATATGT
* * *
51455720 -GCACTAAGAGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAG-ATGAATATGT
** * *
51455747 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGATGAATATGT
* * *
51455774 GGCACTAAGTGTGCGAGATGATTATAT
1 AGCACTAAGTGTGCGAGATGAATATGT
*
51455801 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51455816 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
26 4 0.03
27 95 0.79
28 17 0.14
29 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGATGAATATGT
Found at i:51476402 original size:16 final size:17
Alignment explanation
Indices: 51476370--51476405 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
51476360 ACAATAATAA
*
51476370 AAATATATAATTATGTC
1 AAATAAATAATTATGTC
51476387 AAATAAATAA-TATGTC
1 AAATAAATAATTATGTC
51476403 AAA
1 AAA
51476406 ATCTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (17 bp):
AAATAAATAATTATGTC
Found at i:51476407 original size:17 final size:18
Alignment explanation
Indices: 51476369--51476407 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
51476359 AACAATAATA
*
51476369 AAAATATATAATTATGTC
1 AAAATAAATAATTATGTC
51476387 -AAATAAATAA-TATGTC
1 AAAATAAATAATTATGTC
51476403 AAAAT
1 AAAAT
51476408 CTATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAATAAATAATTATGTC
Found at i:51476445 original size:4 final size:4
Alignment explanation
Indices: 51476436--51476484 Score: 80
Period size: 4 Copynumber: 12.2 Consensus size: 4
51476426 TAAGTAGATT
* *
51476436 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
51476484 T
1 T
51476485 ACAATCATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.47
Consensus pattern (4 bp):
TGTA
Found at i:51480384 original size:44 final size:46
Alignment explanation
Indices: 51480330--51480454 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
51480320 TATACGTACT
* * *
51480330 GATGCATGTCCTAGACATGTCTTACACTAGCACAACTCT-TA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTCGAGGCC
* * * *
51480374 GATGCGTGTCCCAGACACGTCTTACACTGGCTATC-ATTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-A-CAACTCTCGAGGCC
51480421 GATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCACA
51480455 CAAGTAATCC
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
44 27 0.40
45 5 0.07
46 3 0.04
47 32 0.48
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTCGAGGCC
Found at i:51482786 original size:27 final size:27
Alignment explanation
Indices: 51482732--51482842 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
51482722 AGCATGACTG
* *
51482732 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
51482758 CCAGAACAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
51482785 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
51482812 TCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
51482839 CCAG
1 CCAG
51482843 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:51482822 original size:54 final size:53
Alignment explanation
Indices: 51482732--51482842 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
51482722 AGCATGACTG
*
51482732 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAAAGCCA
* * * *
51482785 CCAGAACAGATATATGTGGCAGAGCCATCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAACAGATAATTGTGGCAAAGCCA
51482839 CCAG
1 CCAG
51482843 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAAAGCCA
Found at i:51485507 original size:50 final size:50
Alignment explanation
Indices: 51485439--51485654 Score: 195
Period size: 50 Copynumber: 4.3 Consensus size: 50
51485429 ATCATTTATT
* * * *
51485439 TGGCCGAATAAGCGAGATCAAATATAATATCACATATATGCATACCTATG
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCATACCTATA
* * *
51485489 TGGCCAAATATGCAAGATCAAATATAATATCACATATGTGCTTACTTATA
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCATACCTATA
* ** * * *
51485539 TGGCTGAATATATTAA-TTCAAATATAATATCACATTTTTGCATACCTTCATA
1 TGGCCGAATAT-GCAAGATCAAATATAATATCACATATGTGCATACC-T-ATA
* * * * * *
51485591 T--CCGATTATACAAGATCCAATATAACATCACATATGTACATACCTATG
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCATACCTATA
* *
51485639 TGACCGAATATTCAAG
1 TGGCCGAATATGCAAG
51485655 GTCATTTAGC
Statistics
Matches: 131, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 118 0.90
51 3 0.02
52 4 0.03
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (50 bp):
TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCATACCTATA
Found at i:51485648 original size:100 final size:99
Alignment explanation
Indices: 51485456--51485649 Score: 228
Period size: 100 Copynumber: 1.9 Consensus size: 99
51485446 ATAAGCGAGA
* * *
51485456 TCAAATATAATATCACATATATGCATACCTATGTGGCCAAATATGCAAGATCAAATATAATATCA
1 TCAAATATAATATCACATATATGCATACCTATAT-GCCAAATATACAAGATCAAATATAACATCA
* * * * *
51485521 CATATGTGCTTACTTATATGGCTGAATATATTAAT
65 CATATGTACATACCTATATGACCGAATATATTAAT
* * * * *
51485556 TCAAATATAATATCACATTTTTGCATACCTTCATAT-CCGATTATACAAGATCCAATATAACATC
1 TCAAATATAATATCACATATATGCATACC-T-ATATGCCAAATATACAAGATCAAATATAACATC
*
51485620 ACATATGTACATACCTATGTGACCGAATAT
64 ACATATGTACATACCTATATGACCGAATAT
51485650 TCAAGGTCAT
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
100 74 0.95
101 1 0.01
102 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (99 bp):
TCAAATATAATATCACATATATGCATACCTATATGCCAAATATACAAGATCAAATATAACATCAC
ATATGTACATACCTATATGACCGAATATATTAAT
Found at i:51486340 original size:16 final size:16
Alignment explanation
Indices: 51486319--51486351 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51486309 TAGTCCTAAT
51486319 TGCACAAAACACAAAA
1 TGCACAAAACACAAAA
51486335 TGCACAAAACACAAAA
1 TGCACAAAACACAAAA
51486351 T
1 T
51486352 ATACAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.61, C:0.24, G:0.06, T:0.09
Consensus pattern (16 bp):
TGCACAAAACACAAAA
Found at i:51486357 original size:16 final size:16
Alignment explanation
Indices: 51486321--51486359 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
51486311 GTCCTAATTG
*
51486321 CACAAAACACAAAATG
1 CACAAAACACAAAATA
51486337 CACAAAACACAAAATA
1 CACAAAACACAAAATA
*
51486353 TACAAAA
1 CACAAAA
51486360 TCTCACCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.67, C:0.23, G:0.03, T:0.08
Consensus pattern (16 bp):
CACAAAACACAAAATA
Found at i:51487873 original size:21 final size:22
Alignment explanation
Indices: 51487849--51487909 Score: 88
Period size: 21 Copynumber: 2.8 Consensus size: 22
51487839 TTTTCTGCTA
*
51487849 TTTGGTGTTATTTTTATACTG-
1 TTTGGTGCTATTTTTATACTGT
*
51487870 TTTGGTGCTATTTTGATACTGT
1 TTTGGTGCTATTTTTATACTGT
51487892 TTTGGTGCTACTTTTTAT
1 TTTGGTGCTA-TTTTTAT
51487910 GGTGTTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 19 0.54
22 10 0.29
23 6 0.17
ACGTcount: A:0.13, C:0.08, G:0.20, T:0.59
Consensus pattern (22 bp):
TTTGGTGCTATTTTTATACTGT
Found at i:51498962 original size:42 final size:43
Alignment explanation
Indices: 51498905--51499010 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
51498895 TGAGATTTAT
* *
51498905 GTGTACGACCATGTCTGGGACA-TCGACATC-ATATTTGATTTC
1 GTGTAAGACCATGTCTGGGACAGT-GACATCGATATTTGATTAC
* *
51498947 GTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTGATTAC
* *
51498990 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
51499011 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
42 25 0.45
43 30 0.55
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTGATTAC
Found at i:51500597 original size:42 final size:41
Alignment explanation
Indices: 51500551--51500659 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 41
51500541 AATGATTTCG
51500551 TATAAGACCATGTCTAGGACATGGCATTGATATG-AGGTTCCA
1 TATAAGACCATGTCT-GGACATGGCATTGATATGTA-GTTCCA
* * * *
51500593 TATAAGACCATATCTGGGATATGACATTGATGTGTAGTTCCA
1 TATAAGACCATGTCT-GGACATGGCATTGATATGTAGTTCCA
*
51500635 TGTAAGACCATGTCTGAGACATGGC
1 TATAAGACCATGTCTG-GACATGGC
51500660 TTTAGCACCC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 54 0.96
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (41 bp):
TATAAGACCATGTCTGGACATGGCATTGATATGTAGTTCCA
Found at i:51508967 original size:29 final size:28
Alignment explanation
Indices: 51508924--51509001 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
51508914 TCATGAGATT
51508924 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
51508954 -GCACTAAGTGTGCGAGTTTACAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
51508981 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
51509002 GATTATTAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.12
29 34 0.81
30 3 0.07
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:51509263 original size:174 final size:174
Alignment explanation
Indices: 51508956--51509281 Score: 510
Period size: 174 Copynumber: 1.9 Consensus size: 174
51508946 ATTGTACAGC
* * * *
51508956 ACTAAGTGTGCGAGTTTACAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTG
1 ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
* ** *
51509021 TGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATT
66 TGCGAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAATT
51509086 TTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
131 TTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
* * * *
51509131 ACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGGTGATTACTAAACATTATGTG
1 ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
*
51509196 TGC-AACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGGCTTTACCGAGTCAATT
66 TGCGAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAATT
*
51509260 TTGGATAGCGGAAAAGGTAAGT
131 TTGGACAGCGGAAAAGGTAAGT
51509282 ACCTTGAGTT
Statistics
Matches: 137, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
173 11 0.08
174 66 0.48
175 60 0.44
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
TGCGAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAATT
TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
Found at i:51511345 original size:48 final size:48
Alignment explanation
Indices: 51511264--51511445 Score: 168
Period size: 48 Copynumber: 3.8 Consensus size: 48
51511254 CATGATTGAT
* * * *
51511264 GAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGTGTCGATAC
1 GAGATCTCGTATAAGACCATATCTGGGACATGGCATCGGTATCGATAC
* * * * * *
51511312 GAGATCTCGTGTAAGACCATATCAGGGATATGGCTTCAGTATCGATAA
1 GAGATCTCGTATAAGACCATATCTGGGACATGGCATCGGTATCGATAC
* * * * * * *
51511360 GTGATTTCGTATAAGACCATGTCTGGGACATAGCATCGGCACCGATTC
1 GAGATCTCGTATAAGACCATATCTGGGACATGGCATCGGTATCGATAC
* * *
51511408 GAGA-CTTCGTATAAGATCATATTTGGGATATGGCATCG
1 GAGATC-TCGTATAAGACCATATCTGGGACATGGCATCG
51511446 ATGTGTGGTT
Statistics
Matches: 105, Mismatches: 28, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
48 105 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
GAGATCTCGTATAAGACCATATCTGGGACATGGCATCGGTATCGATAC
Found at i:51521301 original size:43 final size:43
Alignment explanation
Indices: 51521111--51521304 Score: 261
Period size: 43 Copynumber: 4.6 Consensus size: 43
51521101 TGTAACGCAG
* * **
51521111 CTAAAGACCAGGAGTTTTAGCAGCGCTTGTATAAAAAACACCA
1 CTAAAGACCAGGACTTTTAGCGGCGCTTGTATAAAAAATGCCA
*
51521154 CTAAAGACCAGGACTTTTAGCGGCGCTTGTAT--AAAATGCCG
1 CTAAAGACCAGGACTTTTAGCGGCGCTTGTATAAAAAATGCCA
** *
51521195 CTAAAGACCAGGACTTTTAGCAACGCTTGTAT--AAAATCGCCG
1 CTAAAGACCAGGACTTTTAGCGGCGCTTGTATAAAAAAT-GCCA
*
51521237 CTAAAGACCAGGACTTTTAGCGGCGCTTTTATAAAAAATGCCA
1 CTAAAGACCAGGACTTTTAGCGGCGCTTGTATAAAAAATGCCA
*
51521280 CTAAAGAACAGGACTTTTAGCGGCG
1 CTAAAGACCAGGACTTTTAGCGGCG
51521305 TTTTTTAAAA
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
41 41 0.30
42 33 0.24
43 57 0.42
44 5 0.04
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (43 bp):
CTAAAGACCAGGACTTTTAGCGGCGCTTGTATAAAAAATGCCA
Found at i:51521643 original size:21 final size:21
Alignment explanation
Indices: 51521619--51521666 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
51521609 TTCTGTTCTG
*
51521619 CTCCGCCTACTTCGCTACTGC
1 CTCCGCCTACCTCGCTACTGC
* * *
51521640 CTCCGCCTCCCTCGTTGCTGC
1 CTCCGCCTACCTCGCTACTGC
51521661 CTCCGC
1 CTCCGC
51521667 TCTAAGTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.04, C:0.52, G:0.17, T:0.27
Consensus pattern (21 bp):
CTCCGCCTACCTCGCTACTGC
Found at i:51523695 original size:46 final size:46
Alignment explanation
Indices: 51523521--51523695 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
51523511 GTAACCCGCC
* * *
51523521 CATAAGTGAACTCGGACTTAACTCAACGAGCTCGGGCATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATT
*
51523567 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-TT
*** **
51523612 ACATCTCTCGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATT
1 -CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATT
*
51523660 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51523696 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 64 0.60
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATT
Found at i:51529218 original size:37 final size:38
Alignment explanation
Indices: 51529124--51529251 Score: 136
Period size: 37 Copynumber: 3.4 Consensus size: 38
51529114 CTATGCAGTA
* * *
51529124 GATGCACGGGGCGAAGGCGATGGAGGCCGAGATGGGTTGT
1 GATGCACGGGGAGAAGGCGATGGAAG--GAGATGGGTTGC
* * *
51529164 GATGAACGGTGCA-AAGGCGATGGAAGG-GATGGTTTGC
1 GATGCACGG-GGAGAAGGCGATGGAAGGAGATGGGTTGC
51529201 GATGCACGGGGAGAAGGCGATGG-AGGAGATGGGTTGC
1 GATGCACGGGGAGAAGGCGATGGAAGGAGATGGGTTGC
* *
51529238 AATGCACAGGGAGA
1 GATGCACGGGGAGA
51529252 TTTGGGGGAA
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
36 5 0.07
37 47 0.64
38 1 0.01
40 20 0.27
41 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.47, T:0.15
Consensus pattern (38 bp):
GATGCACGGGGAGAAGGCGATGGAAGGAGATGGGTTGC
Found at i:51530094 original size:15 final size:15
Alignment explanation
Indices: 51530071--51530102 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
51530061 AAATAATAAT
51530071 TTATATATATTTATC
1 TTATATATATTTATC
*
51530086 TTATTTATATTTATC
1 TTATATATATTTATC
51530101 TT
1 TT
51530103 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:51539384 original size:10 final size:10
Alignment explanation
Indices: 51539357--51539416 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
51539347 TTAACTTCTA
51539357 AAAGATAAAT
1 AAAGATAAAT
51539367 ACAA-ATAAAT
1 A-AAGATAAAT
*
51539377 AAAGATAATT
1 AAAGATAAAT
51539387 AAAGATAAAT
1 AAAGATAAAT
*
51539397 GAAGATAAAT
1 AAAGATAAAT
51539407 GAAA-ATAAAT
1 -AAAGATAAAT
51539417 CCTAAATTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.86
11 4 0.09
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:51541083 original size:47 final size:46
Alignment explanation
Indices: 51541018--51541235 Score: 200
Period size: 47 Copynumber: 4.7 Consensus size: 46
51541008 ATTGTTGGCT
51541018 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATTAAGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--CACATTAAGAGAGCC
* *
51541064 AGTGTAAGACCATGTCTGGGACATGGCATCG-TCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCACATT-A-A-GAGAGCC
** * * * *
51541112 AGTGTAAGA-CATGTCAAGGACAT-GCATCGACTACGA-GATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-C-AC-ATTAAGAGAGCC
*
51541158 AGTGTAAGACCATGTCTGGGACATGGCATTGC-C-TTAAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCACATTAAG--A-GAGCC
51541205 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
51541236 GCACCTTACC
Statistics
Matches: 139, Mismatches: 18, Indels: 29
0.75 0.10 0.16
Matches are distributed among these distances:
44 2 0.01
45 5 0.04
46 30 0.22
47 73 0.53
48 27 0.19
49 1 0.01
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCACATTAAGAGAGCC
Found at i:51541219 original size:94 final size:94
Alignment explanation
Indices: 51541018--51541235 Score: 271
Period size: 94 Copynumber: 2.3 Consensus size: 94
51541008 ATTGTTGGCT
*
51541018 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTAAGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATGAAGAGAGCCAGTGTAAGACCATGTCTGG
* *
51541083 GACATGGCATCGTCATTGAGACGAGAGCT
66 GACATGGCATCGTCATTAAGACGAGAGCC
** * * * *
51541112 AGTGTAAGACATGTCAAGGACATGCATCGACTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATGAAGAGAGCCAGTGTAAGACCATGTCTG
* * *
51541176 GGACATGGCATTG-CCTTAAGA-TATGAGCC
65 GGACATGGCATCGTCATTAAGACGA-GAGCC
51541205 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
51541236 GCACCTTACC
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
92 1 0.01
93 19 0.18
94 79 0.75
95 7 0.07
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATGAAGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGTCATTAAGACGAGAGCC
Found at i:51543605 original size:13 final size:13
Alignment explanation
Indices: 51543587--51543611 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51543577 TATGTTTCAC
51543587 GATTGTTTTGGTT
1 GATTGTTTTGGTT
51543600 GATTGTTTTGGT
1 GATTGTTTTGGT
51543612 ATGAATCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (13 bp):
GATTGTTTTGGTT
Found at i:51544656 original size:22 final size:22
Alignment explanation
Indices: 51544625--51544671 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
51544615 GGACGGCGAA
* *
51544625 GTAGACAGGACGGCTCAATGCC
1 GTAGACAGGACGGCTAAAGGCC
*
51544647 GTAGATAGGACGGCTAAAGGCC
1 GTAGACAGGACGGCTAAAGGCC
51544669 GTA
1 GTA
51544672 AATATCGCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.34, T:0.15
Consensus pattern (22 bp):
GTAGACAGGACGGCTAAAGGCC
Found at i:51544945 original size:27 final size:27
Alignment explanation
Indices: 51544903--51544994 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
51544893 GGTCATAATC
* *
51544903 GTCATTCTACCTTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
51544930 ATCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
51544957 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTACG
*
51544984 GTAATTTTACC
1 GTCATTTTACC
51544995 AATATTGGGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:51555651 original size:39 final size:39
Alignment explanation
Indices: 51555597--51555829 Score: 387
Period size: 39 Copynumber: 6.0 Consensus size: 39
51555587 AAGACACTGA
*
51555597 AAATGTATCCGGGCTAAAGTTCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
51555636 AAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
51555675 AAATATATCCGGGGTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
51555714 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
51555753 AAATGTATCCGGGAC-AAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGG-CTAAAGTCCCGCAGGCTTCGTGCTGG
* *
51555792 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
51555830 ATAATATAAT
Statistics
Matches: 182, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 181 0.99
40 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:51558747 original size:39 final size:39
Alignment explanation
Indices: 51558704--51558829 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
51558694 TCTTTAACCT
** * *
51558704 GGATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
* * *
51558743 GGATATATTTCTAGCATATAGCCTGCGGATCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
*
51558782 GGATATTTTTCCAGCATATAGCTTGCGGACCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
51558821 GGATATTTT
1 GGATATTTT
51558830 CAATCTCATA
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (39 bp):
GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
Found at i:51566187 original size:47 final size:47
Alignment explanation
Indices: 51566134--51566328 Score: 345
Period size: 47 Copynumber: 4.1 Consensus size: 47
51566124 TTAGGATTTT
*
51566134 AATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
*
51566181 AATGTGATGAATGTGAACATGCATATGCGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
51566228 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
** *
51566275 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCT
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
51566322 AATGTGA
1 AATGTGA
51566329 AATATATATG
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
Found at i:51566188 original size:22 final size:22
Alignment explanation
Indices: 51566161--51566282 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
51566151 CATGTATATG
51566161 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
51566183 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
51566206 TGCGTGATAAGGCCGAATGGCCAA
1 T--GTGATAAGGCCGAATGGCCAA
* *
51566230 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
51566253 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
51566277 TGTGAT
1 TGTGAT
51566283 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 23 0.31
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:51566568 original size:37 final size:37
Alignment explanation
Indices: 51566518--51566620 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
51566508 GGAAATATAT
51566518 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51566555 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51566592 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
51566621 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51585783 original size:40 final size:39
Alignment explanation
Indices: 51585728--51585961 Score: 297
Period size: 40 Copynumber: 5.9 Consensus size: 39
51585718 GGATATAACT
* * *
51585728 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
*
51585768 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
51585808 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
*
51585848 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* * * * *
51585888 ACTCGCACAGATGCCTTTGGGACATAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
* ** *
51585927 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGGTTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTT
51585962 TCATCCAAAT
Statistics
Matches: 171, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 36 0.21
40 132 0.77
41 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:51591187 original size:47 final size:47
Alignment explanation
Indices: 51591134--51591691 Score: 864
Period size: 47 Copynumber: 11.6 Consensus size: 47
51591124 TTAGGATTCT
51591134 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
51591181 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
51591230 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
51591277 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
51591326 ATGTGATGAATGTGAAAGTGTACATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCG
*
51591377 ATGTGATGGATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
51591426 ATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51591473 ATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
51591522 ATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
51591569 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
51591616 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51591663 ATGTGATGAATGTGAAAGTGTATATATGT
1 ATGTGATGAATGTGAAAGTGTATATATGT
51591692 TGTAACAGCC
Statistics
Matches: 479, Mismatches: 24, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
47 255 0.53
49 178 0.37
51 46 0.10
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51591194 original size:96 final size:92
Alignment explanation
Indices: 51591134--51591689 Score: 756
Period size: 96 Copynumber: 5.8 Consensus size: 92
51591124 TTAGGATTCT
* *
51591134 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
51591199 TGTATATATATGTGATAAGGCCGAATAGCCG
66 TGTATATATATGTGATAAGG-C--AT-GCCG
*
51591230 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
51591295 TGTATATATATGTGATAAGGCCTAATGGCCA
66 TGTATATATATGTGATAAGG-C--AT-GCCG
*
51591326 ATGTGATGAATGTGAAAGTGTACATATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
51591391 AAAGTGTATATATATGTGATAAGGCCTAATGGCCG
62 AAAGTGTATATATATGTGATAAGG-C--AT-GCCG
*
51591426 ATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
51591491 TGTCTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGG-C--AT-GCCG
* * *
51591522 ATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
51591587 TG--TATATATGTGATAAGGCCTAATAGCCG
66 TGTATATATATGTGATAAGG-C--AT-GCCG
* * * *
51591616 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
51591681 TGTATATAT
66 TGTATATAT
51591690 GTTGTAACAG
Statistics
Matches: 434, Mismatches: 20, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
94 90 0.21
96 252 0.58
100 92 0.21
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (92 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCATGCCG
Done.