Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 155 of 373
Found at i:51593295 original size:29 final size:28
Alignment explanation
Indices: 51593259--51593336 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
51593249 TCATGAGATT
51593259 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
51593289 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
*
51593316 TGGCAATAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
51593337 GATTATTAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.12
29 34 0.81
30 3 0.07
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:51594926 original size:47 final size:47
Alignment explanation
Indices: 51594857--51595056 Score: 301
Period size: 47 Copynumber: 4.3 Consensus size: 47
51594847 GGGGTGTTAC
51594857 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
51594904 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
* *
51594951 ATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * * *
51594998 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
*
51595045 AAATGTGATAAG
1 ATATGTGATAAG
51595057 TCCCGAAGGG
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 140 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:51595225 original size:37 final size:37
Alignment explanation
Indices: 51595175--51595275 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
51595165 TCTAGCTCTA
51595175 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
51595212 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
51595249 AAGACCTGATGACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
51595276 TCGTCTGAGC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:51599467 original size:28 final size:28
Alignment explanation
Indices: 51599398--51599468 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
51599388 AATGAGATTG
*
51599398 GCACTAAGTGTGCCAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
51599426 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
51599454 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
51599469 ACTTACTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:51600797 original size:40 final size:40
Alignment explanation
Indices: 51600689--51600833 Score: 197
Period size: 40 Copynumber: 3.6 Consensus size: 40
51600679 TCGAATGATG
* *
51600689 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51600729 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51600768 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51600809 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51600834 AACGAGTATC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 34 0.37
40 57 0.61
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51600855 original size:79 final size:79
Alignment explanation
Indices: 51600702--51600866 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
51600692 GGACTAAGAT
* **
51600702 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51600767 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* *
51600781 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TATC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51600844 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
51600860 CCGAAGG
1 CCGAAGG
51600867 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:51604777 original size:27 final size:26
Alignment explanation
Indices: 51604758--51604810 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
51604748 TCATTTAACT
51604758 ATTTTCATATAATT-GATTCATATAATC
1 ATTTT-ATAT-ATTCGATTCATATAATC
51604785 ATTTTATATATTCGATTCCATATAAT
1 ATTTTATATATTCGATT-CATATAAT
51604811 TTATTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 8 0.33
27 13 0.54
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (26 bp):
ATTTTATATATTCGATTCATATAATC
Found at i:51604832 original size:26 final size:26
Alignment explanation
Indices: 51604799--51604853 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
51604789 TATATATTCG
*
51604799 ATTCCATATAATTTA-TTCACATAACC
1 ATTCCATAT-ATCTATTTCACATAACC
*
51604825 ATTCCATATATCTATTTCATATAACC
1 ATTCCATATATCTATTTCACATAACC
51604851 ATT
1 ATT
51604854 TTATTTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTCCATATATCTATTTCACATAACC
Found at i:51604834 original size:40 final size:39
Alignment explanation
Indices: 51604763--51604848 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
51604753 TAACTATTTT
* * **
51604763 CATATAATTGATTCATATAATCATTTTATATATTCGATTC
1 CATATAATTGATTCACATAACCATTCCATATA-TCGATTC
* * *
51604803 CATATAATTTATTCACATAACCATTCCATATATCTATTT
1 CATATAATTGATTCACATAACCATTCCATATATCGATTC
51604842 CATATAA
1 CATATAA
51604849 CCATTTTATT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 12 0.31
40 27 0.69
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.44
Consensus pattern (39 bp):
CATATAATTGATTCACATAACCATTCCATATATCGATTC
Found at i:51609954 original size:41 final size:41
Alignment explanation
Indices: 51609897--51609982 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
51609887 AAGCTTAGTA
*
51609897 TGTAACGCCCCAAAATTTTAAGTATTTATTTTTGTATTTTG
1 TGTAACGCCCCAAAATTTTAAGTATTTATTTTTGTATGTTG
51609938 TGTAACGCCCCAAAATTTTAAGTATTTATTTTTGTATGTTG
1 TGTAACGCCCCAAAATTTTAAGTATTTATTTTTGTATGTTG
51609979 TGTA
1 TGTA
51609983 TCACATCTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.48
Consensus pattern (41 bp):
TGTAACGCCCCAAAATTTTAAGTATTTATTTTTGTATGTTG
Found at i:51612272 original size:28 final size:28
Alignment explanation
Indices: 51612232--51612338 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
51612222 GAATCATTCG
* *
51612232 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
51612260 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
51612288 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
51612316 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
51612339 ATTTGATTGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:51616231 original size:68 final size:68
Alignment explanation
Indices: 51616094--51616250 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
51616084 TTAACTGTGA
* * * *
51616094 AATC-AACAGATTCGGACAGCTACATTTACTAAATAAAACAGCATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
51616158 ATG
66 ATG
* * * * *
51616161 AATTTAACATATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGAT-GATGCTTTGAAT
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAG-TGCATCGAAC
*
51616225 AGTG
65 AATG
*
51616229 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
51616251 TAATTTTAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 4 0.05
68 72 0.95
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
ATG
Found at i:51620757 original size:37 final size:37
Alignment explanation
Indices: 51620696--51620774 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
51620686 TTATTACGAA
* * *
51620696 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
51620733 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
51620770 GTCTT
1 GTCTT
51620775 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:51620980 original size:47 final size:47
Alignment explanation
Indices: 51620893--51621193 Score: 494
Period size: 47 Copynumber: 6.4 Consensus size: 47
51620883 CCCTTCGGGA
* * * * * * *
51620893 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51620940 CCTGTCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51620987 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51621034 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51621081 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51621128 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51621175 CTTATCACATATATACACT
1 CTTATCACATATATACACT
51621194 GTCTTGGCTG
Statistics
Matches: 237, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 237 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51624082 original size:46 final size:46
Alignment explanation
Indices: 51624015--51624103 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
51624005 AGCTTGTATA
* *
51624015 TCCCAAGGTTGATGTATGTCCCAGACATGTCTTACACTAGCTCTCG
1 TCCCAAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG
* *
51624061 TCCCAATGCTGATGCATGTCCCAGACATGTCTTACACTGGCTC
1 TCCCAAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTC
51624104 ACATACCACT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
TCCCAAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG
Found at i:51626117 original size:31 final size:31
Alignment explanation
Indices: 51626076--51626139 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
51626066 TTATAGTTCG
* *
51626076 ATAGTTTGATGCAGTCTCCGATGACTCCCAA
1 ATAGTGTGATGCAGTCTCCGACGACTCCCAA
* *
51626107 ATAGTGTGATGCGGTCTCCGACGTCTCCCAA
1 ATAGTGTGATGCAGTCTCCGACGACTCCCAA
51626138 AT
1 AT
51626140 TTGAGCTAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (31 bp):
ATAGTGTGATGCAGTCTCCGACGACTCCCAA
Found at i:51634337 original size:13 final size:13
Alignment explanation
Indices: 51634321--51634353 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51634311 TTTAATTAAA
*
51634321 TTAGTTAATTAGT
1 TTAGATAATTAGT
51634334 TTAGATAATTAGT
1 TTAGATAATTAGT
51634347 TTA-ATAA
1 TTAGATAA
51634354 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:51637000 original size:43 final size:42
Alignment explanation
Indices: 51636952--51637033 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 42
51636942 TTGAATCCTC
*
51636952 TTATTTTT-TTATTTCTTCTT-ATTTTTATTTTATTTTATTTATG
1 TTATTTTTATT-TTTCTT-TTCATTTTTATTTT-TATTATTTATG
*
51636995 TTATTTTTATTTTTCTTTTCATTTTTCTTTTTATTATTT
1 TTATTTTTATTTTTCTTTTCATTTTTATTTTTATTATTT
51637034 TATTTTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
42 9 0.26
43 24 0.69
44 2 0.06
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.78
Consensus pattern (42 bp):
TTATTTTTATTTTTCTTTTCATTTTTATTTTTATTATTTATG
Found at i:51651572 original size:29 final size:31
Alignment explanation
Indices: 51651523--51651581 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
51651513 AGGAAATAAC
* *
51651523 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATATGGAGATAG
51651552 TATTTATTATAATAGAT-AAATATGGAGATA
1 TATTTATT-TAATAGATGAAATATGGAGATA
51651582 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATATGGAGATAG
Found at i:51658272 original size:15 final size:16
Alignment explanation
Indices: 51658236--51658272 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
51658226 ACATATCATT
51658236 TATTTCATTATATCAA
1 TATTTCATTATATCAA
51658252 TATTTCA-TATA-CAA
1 TATTTCATTATATCAA
51658266 TAGTTTC
1 TA-TTTC
51658273 CATGTATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:51661411 original size:27 final size:27
Alignment explanation
Indices: 51661381--51661558 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51661371 ATATTGAGTC
* * * *
51661381 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51661408 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51661435 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51661463 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51661490 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51661517 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51661544 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51661559 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51661520 original size:82 final size:81
Alignment explanation
Indices: 51661402--51661557 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51661392 TGCTATATAA
* *
51661402 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51661467 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51661484 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51661548 CACTTAGTGC
65 CACTTAGTGC
51661558 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51667401 original size:349 final size:349
Alignment explanation
Indices: 51666762--51667466 Score: 1367
Period size: 349 Copynumber: 2.0 Consensus size: 349
51666752 TAATGCAATC
51666762 ACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGACGTCGGGGGAGGATGCCTCCTCTCGTGC
1 ACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGACGTCGGGGGAGGATGCCTCCTCTCGTGC
51666827 GCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGATCGGCCGTATCAGAGGCCCCCT
66 GCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGATCGGCCGTATCAGAGGCCCCCT
*
51666892 CTGACTACCACCCCTGCCTCCTAAAATTCTCGCTGGTCTACCTCTAGATGTCACTCCACTAGGTC
131 CTGACTACCACCCATGCCTCCTAAAATTCTCGCTGGTCTACCTCTAGATGTCACTCCACTAGGTC
51666957 TTGCACCTTGAATCTTATTCTTCTCATCCAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAA
196 TTGCACCTTGAATCTTATTCTTCTCATCCAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAA
51667022 CCGCATCCGTAACAGGCCCTGCTAATAGACTTGCCCCAACATTCACCTAGGTGTCGTCTTCCACA
261 CCGCATCCGTAACAGGCCCTGCTAATAGACTTGCCCCAACATTCACCTAGGTGTCGTCTTCCACA
51667087 TTGGGGACATTCAGGTTTCTCGTG
326 TTGGGGACATTCAGGTTTCTCGTG
51667111 ACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGACGTC-GGGGAGGATGCCTCCTCTCGTGC
1 ACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGACGTCGGGGGAGGATGCCTCCTCTCGTGC
51667175 GCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGATCGGCCGTATCAGAGGCCCCCC
66 GCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGATCGGCCGTATCAGAGG-CCCCC
*
51667240 TCTGACTACCACCCATGCCTCCTAAAATTCTCGGTGGTCTACCTCTAGATGTCACTCCACTAGGT
130 TCTGACTACCACCCATGCCTCCTAAAATTCTCGCTGGTCTACCTCTAGATGTCACTCCACTAGGT
51667305 CTTGCACCTTGAATCTTATTCTTCTCATCCAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGA
195 CTTGCACCTTGAATCTTATTCTTCTCATCCAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGA
51667370 ACCGCATCCGTAACAGGCCCTGCTAATAGACTTGCCCCAACATTCACCTAGGTGTCGTCTTCCAC
260 ACCGCATCCGTAACAGGCCCTGCTAATAGACTTGCCCCAACATTCACCTAGGTGTCGTCTTCCAC
51667435 ATTGGGGACATTCAGGTTTCTCGTG
325 ATTGGGGACATTCAGGTTTCTCGTG
51667460 ACGATTA
1 AC-ATTA
51667467 TTGCCTACAC
Statistics
Matches: 352, Mismatches: 2, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
348 82 0.23
349 266 0.76
350 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (349 bp):
ACATTAGTATCAAAGAGAGTGAAGGTACCAGTGATGACGTCGGGGGAGGATGCCTCCTCTCGTGC
GCGAATGGCATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGATCGGCCGTATCAGAGGCCCCCT
CTGACTACCACCCATGCCTCCTAAAATTCTCGCTGGTCTACCTCTAGATGTCACTCCACTAGGTC
TTGCACCTTGAATCTTATTCTTCTCATCCAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAA
CCGCATCCGTAACAGGCCCTGCTAATAGACTTGCCCCAACATTCACCTAGGTGTCGTCTTCCACA
TTGGGGACATTCAGGTTTCTCGTG
Found at i:51669952 original size:27 final size:27
Alignment explanation
Indices: 51669922--51670099 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51669912 ATATTGAGTC
* * * *
51669922 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51669949 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51669976 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51670004 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51670031 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51670058 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51670085 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51670100 GCACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51670061 original size:82 final size:81
Alignment explanation
Indices: 51669943--51670098 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51669933 TGCTATATAA
* *
51669943 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51670008 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51670025 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51670089 CACTTAGTGC
65 CACTTAGTGC
51670099 TGCACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51673174 original size:58 final size:58
Alignment explanation
Indices: 51673084--51673199 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
51673074 TAATGGGGTT
51673084 GAGATTTTTAGGGGTATCACTGGAGTTGCCCCTAATGTGGTTGAATGTTGTATTGAGG
1 GAGATTTTTAGGGGTATCACTGGAGTTGCCCCTAATGTGGTTGAATGTTGTATTGAGG
51673142 GAGATTTTTAGGGGTATCACTGGAGTTGCCCCTAATGTGGTTGAATGTTGTATTGAGG
1 GAGATTTTTAGGGGTATCACTGGAGTTGCCCCTAATGTGGTTGAATGTTGTATTGAGG
51673200 CCATGGAGAG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.21, C:0.10, G:0.33, T:0.36
Consensus pattern (58 bp):
GAGATTTTTAGGGGTATCACTGGAGTTGCCCCTAATGTGGTTGAATGTTGTATTGAGG
Found at i:51676410 original size:26 final size:26
Alignment explanation
Indices: 51676381--51676488 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
51676371 TGATACAAAT
51676381 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51676407 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51676433 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51676459 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51676485 TGAT
1 TGAT
51676489 GAGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51678175 original size:54 final size:54
Alignment explanation
Indices: 51678081--51678225 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
51678071 TGGAGGAAGC
* *
51678081 GTCCTGGTGGCTATGCCATAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
*
51678136 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATGTCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
51678190 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
51678226 ACTTCATCAG
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
53 6 0.07
54 58 0.69
55 20 0.24
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:51678222 original size:27 final size:27
Alignment explanation
Indices: 51678084--51678225 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 27
51678074 AGGAAGCGTC
* * *
51678084 CTGGTGGCTATGCCATAATTTATCT-AAT
1 CTGGTGGCTCTGCCACAA--TATCTGTAT
*
51678112 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
51678139 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
51678166 CTGGTGGCTCTGCCACATATGTCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
51678193 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
51678220 CTGGTG
1 CTGGTG
51678226 ACTTCATCAG
Statistics
Matches: 98, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
26 8 0.08
27 73 0.74
28 16 0.16
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:51686858 original size:39 final size:39
Alignment explanation
Indices: 51686822--51686900 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
51686812 ATTATAATCG
51686822 ATTACCACAATCAACCAATCATTTCAAACCTCATAATAA
1 ATTACCACAATCAACCAATCATTTCAAACCTCATAATAA
*
51686861 ATTACCACAATCAATCAATCATTTCAAACCTCATAATAA
1 ATTACCACAATCAACCAATCATTTCAAACCTCATAATAA
51686900 A
1 A
51686901 CATACACATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (39 bp):
ATTACCACAATCAACCAATCATTTCAAACCTCATAATAA
Found at i:51689774 original size:43 final size:40
Alignment explanation
Indices: 51689725--51689889 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 40
51689715 TAAGGAGCAC
*
51689725 TATCACTTAAGCTCGCATGAGGAGCTTCGCTAATACACAGCT
1 TATC-CTTAAGCTC-CATGAGGAGCTTCGCTGATACACAGCT
* * * *
51689767 TCATCACTTAAGGTCACGTGGGGAGCTTCGCTGATACATAGCT
1 T-ATC-CTTAAGCTC-CATGAGGAGCTTCGCTGATACACAGCT
* * **
51689810 TATCCTT-AGCTCAAAGAGGAGCTTTTCTGATACACAGCT
1 TATCCTTAAGCTCCATGAGGAGCTTCGCTGATACACAGCT
* * *
51689849 TATCCATAAGCT-TATAGGGGAGCTTCGCTGATACACAGCT
1 TATCCTTAAGCTCCAT-GAGGAGCTTCGCTGATACACAGCT
51689889 T
1 T
51689890 GTCCATAGAC
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 27 0.27
40 30 0.30
41 3 0.03
42 4 0.04
43 36 0.36
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (40 bp):
TATCCTTAAGCTCCATGAGGAGCTTCGCTGATACACAGCT
Found at i:51689841 original size:39 final size:39
Alignment explanation
Indices: 51689745--51689968 Score: 173
Period size: 40 Copynumber: 5.6 Consensus size: 39
51689735 GCTCGCATGA
* *
51689745 GGAGCTTCGCTAATACACAGCTTCATCACTTAAGGTCACGT-GG
1 GGAGCTTCGCTGATACACAGCTT-ATC-CTT-AGCTCA--TAGG
* * *
51689788 GGAGCTTCGCTGATACATAGCTTATCCTTAGCTCAAAGA
1 GGAGCTTCGCTGATACACAGCTTATCCTTAGCTCATAGG
** * *
51689827 GGAGCTTTTCTGATACACAGCTTATCCATAAGCTTATAGG
1 GGAGCTTCGCTGATACACAGCTTATCC-TTAGCTCATAGG
* *
51689867 GGAGCTTCGCTGATACACAGCTTGTCCATAGACTCATAGG
1 GGAGCTTCGCTGATACACAGCTTATCCTTAG-CTCATAGG
** ** ** *
51689907 GGAGCTTCATTGATGTACAATTTATCCTTAGCTCA-CGG
1 GGAGCTTCGCTGATACACAGCTTATCCTTAGCTCATAGG
* * *
51689945 AGGAGCTTTGTTGATACACGGCTT
1 -GGAGCTTCGCTGATACACAGCTT
51689969 GTAAAATCAT
Statistics
Matches: 143, Mismatches: 34, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
38 2 0.01
39 47 0.33
40 67 0.47
41 3 0.02
42 3 0.02
43 21 0.15
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29
Consensus pattern (39 bp):
GGAGCTTCGCTGATACACAGCTTATCCTTAGCTCATAGG
Found at i:51689882 original size:40 final size:40
Alignment explanation
Indices: 51689745--51689914 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
51689735 GCTCGCATGA
* * *
51689745 GGAGCTTCGCTAATACACAGCTTCATCACTTAAGGTCACGT-GG
1 GGAGCTTCGCTGATACACAGCTT-ATC-CATAAGCTCA--TAGG
* * * *
51689788 GGAGCTTCGCTGATACATAGCTTATCC-TTAGCTCAAAGA
1 GGAGCTTCGCTGATACACAGCTTATCCATAAGCTCATAGG
** *
51689827 GGAGCTTTTCTGATACACAGCTTATCCATAAGCTTATAGG
1 GGAGCTTCGCTGATACACAGCTTATCCATAAGCTCATAGG
*
51689867 GGAGCTTCGCTGATACACAGCTTGTCCAT-AGACTCATAGG
1 GGAGCTTCGCTGATACACAGCTTATCCATAAG-CTCATAGG
51689907 GGAGCTTC
1 GGAGCTTC
51689915 ATTGATGTAC
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 27 0.25
40 55 0.51
41 1 0.01
42 3 0.03
43 21 0.20
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (40 bp):
GGAGCTTCGCTGATACACAGCTTATCCATAAGCTCATAGG
Found at i:51693459 original size:47 final size:47
Alignment explanation
Indices: 51693401--51693522 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
51693391 GCATTGGCAC
*
51693401 TAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGACATTTGG
*
51693448 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGACATTTGG
*
51693495 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATATCATGTAAGACCATG
51693523 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:51693683 original size:53 final size:53
Alignment explanation
Indices: 51693504--51693803 Score: 332
Period size: 55 Copynumber: 5.6 Consensus size: 53
51693494 GTAAGATAAG
* * * * *
51693504 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAT
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGCAAA
* * * *
51693558 GAAATCATGTAAGACCATGTCAAGACATGGCATTGAAGAGTTATTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAG-T-TCATAAGGCAAA
* * * * *
51693613 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAA
*
51693666 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCGAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAA
* * * * * * *
51693721 GGTTCCATGTAAGACCAT-TGCAAGGCATGACGTTGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGT-CAAGACATGGCATTGATGAGTTCATAAGGCAAA
*
51693774 GATACCACGTAAGACCATGTCAAGACATGG
1 GATACCATGTAAGACCATGTCAAGACATGG
51693804 AAATGGTAAG
Statistics
Matches: 205, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
53 79 0.39
54 40 0.20
55 85 0.41
56 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAA
Found at i:51693699 original size:108 final size:108
Alignment explanation
Indices: 51693509--51693803 Score: 448
Period size: 108 Copynumber: 2.7 Consensus size: 108
51693499 ATAAGGATAT
* * * * *
51693509 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAATGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAAGATACCATGTAAGACC
*
51693574 ATGTCAAGACATGGCATTGAAGAGTTATTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGAAGAGTTACTATAAGGCAAAGGTCC
51693618 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCATGTAAGACCA
* * *
51693683 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCGAAGGTTC
66 TGTCAAGACATGGCATTGAAGAGTTACTATAAGGCAAAGGTCC
* * * *
51693726 CATGTAAGACCATTG-CAAGGCATGACGTTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCA-TGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCATGTAAGACC
51693790 ATGTCAAGACATGG
65 ATGTCAAGACATGG
51693804 AAATGGTAAG
Statistics
Matches: 172, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
108 134 0.78
109 38 0.22
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCATGTAAGACCA
TGTCAAGACATGGCATTGAAGAGTTACTATAAGGCAAAGGTCC
Found at i:51693816 original size:53 final size:53
Alignment explanation
Indices: 51693501--51693817 Score: 309
Period size: 53 Copynumber: 5.9 Consensus size: 53
51693491 TTGGTAAGAT
* * * *
51693501 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTC-ATAAGGC
* * * * *
51693555 AATGAAATCATGTAAGACCATGTCAAGACATGGCATT-GAAGAGTTATTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTA-AG-T-TCATAAGGC
* * * *
51693610 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
51693663 AAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * * *
51693718 GAAGG-TTCCATGTAAGACCAT-TGCAAGGCATGACGTTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGT-CAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
51693771 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCA
51693818 AAAAGGAAAA
Statistics
Matches: 216, Mismatches: 35, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
52 7 0.03
53 84 0.39
54 40 0.19
55 77 0.36
56 8 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:51697472 original size:11 final size:11
Alignment explanation
Indices: 51697456--51697490 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
51697446 TTTACTTTGG
51697456 TTTATTTTTAT
1 TTTATTTTTAT
51697467 TTTATTTTTA-
1 TTTATTTTTAT
51697477 -TTATTTTTAT
1 TTTATTTTTAT
51697487 TTTA
1 TTTA
51697491 ACTTAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.41
11 13 0.59
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:51697482 original size:20 final size:20
Alignment explanation
Indices: 51697457--51697504 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
51697447 TTACTTTGGT
** *
51697457 TTATTTTTATTTTATTTTTA
1 TTATTTTTATTTTAACTTAA
51697477 TTATTTTTATTTTAACTTAA
1 TTATTTTTATTTTAACTTAA
51697497 TTATTTTT
1 TTATTTTT
51697505 CATGATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TTATTTTTATTTTAACTTAA
Found at i:51698097 original size:36 final size:36
Alignment explanation
Indices: 51698057--51698128 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
51698047 TAATGCATAA
51698057 GAACGATTTAAGGAGTTATTATATAAATGCTCTCAT
1 GAACGATTTAAGGAGTTATTATATAAATGCTCTCAT
51698093 GAACGATTTAAGGAGTTATTATATAAATGCTCTCAT
1 GAACGATTTAAGGAGTTATTATATAAATGCTCTCAT
51698129 CATAAAATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (36 bp):
GAACGATTTAAGGAGTTATTATATAAATGCTCTCAT
Found at i:51701768 original size:44 final size:44
Alignment explanation
Indices: 51701703--51701791 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
51701693 AAGCAATAGG
*
51701703 AGCTGTGTTAGGACAATGAATGAATAGAATTTTCCATCCCATTT
1 AGCTGTGTTAGGACAACGAATGAATAGAATTTTCCATCCCATTT
51701747 AGCTGTGTTAGGACAACGAATGAATAGAATTTTCCATCCCATTT
1 AGCTGTGTTAGGACAACGAATGAATAGAATTTTCCATCCCATTT
51701791 A
1 A
51701792 CTATGCTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (44 bp):
AGCTGTGTTAGGACAACGAATGAATAGAATTTTCCATCCCATTT
Found at i:51706114 original size:31 final size:31
Alignment explanation
Indices: 51706074--51706159 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
51706064 TCAAGCTCAG
51706074 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
51706104 CATATCACTGGGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
51706135 CATATCGCTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
51706160 TGTAACAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:51706413 original size:25 final size:25
Alignment explanation
Indices: 51706385--51706471 Score: 147
Period size: 25 Copynumber: 3.5 Consensus size: 25
51706375 ATAACTAGGA
*
51706385 CAAAGCCCTTTTTGATAAACTGGGG
1 CAAAGCCCTTTTCGATAAACTGGGG
51706410 CAAAGCCCTTTTCGATAAACTGGGG
1 CAAAGCCCTTTTCGATAAACTGGGG
*
51706435 CAAAGCCCTTTTCGGTAAACTGGGG
1 CAAAGCCCTTTTCGATAAACTGGGG
*
51706460 CATAGCCCTTTT
1 CAAAGCCCTTTT
51706472 GCACTTCCTC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
CAAAGCCCTTTTCGATAAACTGGGG
Found at i:51713620 original size:31 final size:31
Alignment explanation
Indices: 51713573--51713647 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
51713563 AGGTAGGAAT
51713573 CCGAAGCCTTTACATTATTCATATCACTAGG
1 CCGAAGCCTTTACATTATTCATATCACTAGG
* * *
51713604 CCGAAGTCTTTTCATTATTCATATCGCTAGG
1 CCGAAGCCTTTACATTATTCATATCACTAGG
51713635 CCGAAGCCTTTAC
1 CCGAAGCCTTTAC
51713648 TGTAACAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (31 bp):
CCGAAGCCTTTACATTATTCATATCACTAGG
Found at i:51713892 original size:24 final size:24
Alignment explanation
Indices: 51713852--51713959 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
51713842 CTGGAGGCCT
*
51713852 AGCCTCTTTTAAT-AACTAGGGCAA
1 AGCC-CTTTTGATAAACTAGGGCAA
*
51713876 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTAGGGCAA
* *
51713900 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-GATAAACTAGGGCAA
* *
51713925 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-GATAAACTAGGGCAA
51713950 AGCCCTTTTG
1 AGCCCTTTTG
51713960 CACTTCCTCC
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
23 7 0.09
24 24 0.31
25 46 0.60
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTAGGGCAA
Found at i:51713921 original size:25 final size:25
Alignment explanation
Indices: 51713865--51713958 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
51713855 CTCTTTTAAT
*
51713865 AACTAGGGCAAAGCCCTTTT-GATA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
51713889 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
51713914 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
51713939 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
51713959 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 19 0.29
25 46 0.71
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:51722817 original size:5 final size:5
Alignment explanation
Indices: 51722807--51722831 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51722797 ATCTGTGTTC
51722807 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
51722832 AAATTGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:51724666 original size:40 final size:40
Alignment explanation
Indices: 51724562--51724785 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
51724552 CTAACGGGGT
* * * * *
51724562 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
51724602 TAAGTCCCG-AGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
51724641 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
51724681 TAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
51724721 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
51724761 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
51724786 GGTTATATCC
Statistics
Matches: 168, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 45 0.27
40 123 0.73
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:51724731 original size:80 final size:79
Alignment explanation
Indices: 51724562--51724810 Score: 308
Period size: 80 Copynumber: 3.2 Consensus size: 79
51724552 CTAACGGGGT
* * * *
51724562 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGCTAAGTCCCGAGGCATTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAGGCATTTGTGCGAGT
51724627 TACTA-ATTCCGGGC
66 TACTATA-TCCGGGC
* *
51724641 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCC-AAGGCATTTGTGCGAG
51724706 TTACTATATCCGGGC
65 TTACTATATCCGGGC
* * * *
51724721 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGCTAAGACCCGACGGC-CTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCC-AAGGCATTTGTGCGA
***
51724784 GTGGTTATATCC-GGC
64 GTTACTATATCCGGGC
*
51724799 TAAATCCCGAAG
1 TAAGTCCCGAAG
51724811 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
78 14 0.09
79 62 0.41
80 73 0.49
81 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAGGCATTTGTGCGAGT
TACTATATCCGGGC
Found at i:51726915 original size:29 final size:28
Alignment explanation
Indices: 51726851--51726935 Score: 138
Period size: 26 Copynumber: 3.1 Consensus size: 28
51726841 TTGCTAAATG
51726851 GTGCCTAAATGATGAAATCAATTTATTT
1 GTGCCTAAATGATGAAATCAATTTATTT
*
51726879 GT--TTAAATGATGAAATCAATTTATTT
1 GTGCCTAAATGATGAAATCAATTTATTT
51726905 GATGCCTAAATGATGAAATCAATTTATTT
1 G-TGCCTAAATGATGAAATCAATTTATTT
51726934 GT
1 GT
51726936 TTAATTAAGC
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
26 24 0.46
27 1 0.02
28 3 0.06
29 24 0.46
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.41
Consensus pattern (28 bp):
GTGCCTAAATGATGAAATCAATTTATTT
Found at i:51727342 original size:80 final size:79
Alignment explanation
Indices: 51727258--51727435 Score: 205
Period size: 79 Copynumber: 2.2 Consensus size: 79
51727248 GGACTAAGAT
*
51727258 CCGAAGGCATTTGTACGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTACGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
51727322 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * ** * * * *
51727338 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
51727403 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
*
51727417 CCGAAGGCATTTGAACGAG
1 CCGAAGGCATTTGTACGAG
51727436 GAGCTATATC
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 42 0.52
80 36 0.44
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:51727409 original size:39 final size:39
Alignment explanation
Indices: 51727205--51727427 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
51727195 TTGAATGCTG
* * * * * *
51727205 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
51727245 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
51727284 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
**
51727325 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
51727365 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
51727404 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51727428 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 39 0.26
40 103 0.68
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:51727447 original size:79 final size:80
Alignment explanation
Indices: 51727285--51727462 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
51727275 AGATACAAAT
* * * *
51727285 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
51727350 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
51727365 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
51727429 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
51727444 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51727463 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:51731831 original size:25 final size:25
Alignment explanation
Indices: 51731797--51731850 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
51731787 TACTCCAGCC
51731797 GATCATGATACCCGAGTGGAAATGG
1 GATCATGATACCCGAGTGGAAATGG
51731822 GATCATGATACCCGAGTGGAAATGG
1 GATCATGATACCCGAGTGGAAATGG
51731847 GATC
1 GATC
51731851 GAGTCACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (25 bp):
GATCATGATACCCGAGTGGAAATGG
Found at i:51734609 original size:80 final size:79
Alignment explanation
Indices: 51734524--51734701 Score: 187
Period size: 79 Copynumber: 2.2 Consensus size: 79
51734514 GGACTAAGAT
*
51734524 CCGAAGGCATTTGTACGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTACGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
51734588 AAATCCAGGTTAAGTC
64 AAAACCAGGCTAAGTC
* * * ** ** * * *
51734604 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTTTGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
* *
51734669 AACCGGGCTATGTC
66 AACCAGGCTAAGTC
*
51734683 CCGAAGGCATTTGAACGAG
1 CCGAAGGCATTTGTACGAG
51734702 GAGCTATATC
Statistics
Matches: 79, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
79 41 0.52
80 35 0.44
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCAGGCTAAGTC
Found at i:51734620 original size:40 final size:40
Alignment explanation
Indices: 51734471--51734695 Score: 190
Period size: 40 Copynumber: 5.7 Consensus size: 40
51734461 TTGAATGCTG
* * * *
51734471 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
51734511 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
51734550 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * **
51734591 TCCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
** * *
51734631 TCCGGGTTTTGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
51734670 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
51734696 AACGAGGAGC
Statistics
Matches: 151, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
39 34 0.23
40 104 0.69
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:51739809 original size:40 final size:40
Alignment explanation
Indices: 51739711--51739973 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
51739701 TCCTCGTTCA
* * * * *
51739711 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51739750 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51739790 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51739830 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51739870 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
51739910 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51739950 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51739974 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51742274 original size:40 final size:40
Alignment explanation
Indices: 51742244--51742453 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
51742234 GGACTAAGAT
* * *
51742244 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
51742284 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
51742324 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * *
51742364 CCAAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
51742404 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
51742443 CCGAAGGCATT
1 CCGAAGGCATT
51742454 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 34 0.22
40 124 0.78
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:51742473 original size:79 final size:80
Alignment explanation
Indices: 51742244--51742488 Score: 226
Period size: 80 Copynumber: 3.1 Consensus size: 80
51742234 GGACTAAGAT
* * * * * * * ** * *
51742244 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAACGAG-GAGCT
51742308 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
51742324 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAACGAGGAGCTA
*
51742389 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * * *
51742404 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAACGAGGAGCTA
* *
51742468 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
51742482 CCGAAGG
1 CCGAAGG
51742489 TACGTGATTT
Statistics
Matches: 143, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 46 0.32
80 83 0.58
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:51763360 original size:40 final size:40
Alignment explanation
Indices: 51763330--51763539 Score: 323
Period size: 40 Copynumber: 5.3 Consensus size: 40
51763320 GGACTAAGAT
* * *
51763330 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
51763370 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
51763410 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
51763450 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
51763490 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
51763529 CCGAAGGCATT
1 CCGAAGGCATT
51763540 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:51763559 original size:79 final size:80
Alignment explanation
Indices: 51763330--51763574 Score: 244
Period size: 80 Copynumber: 3.1 Consensus size: 80
51763320 GGACTAAGAT
* * * * * * ** * *
51763330 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
51763394 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
51763410 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
51763475 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
51763490 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
51763554 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
51763568 CCGAAGG
1 CCGAAGG
51763575 TACGTGATTT
Statistics
Matches: 145, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.32
80 84 0.58
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:51778871 original size:71 final size:71
Alignment explanation
Indices: 51778755--51778898 Score: 288
Period size: 71 Copynumber: 2.0 Consensus size: 71
51778745 TTTCCACTCC
51778755 CTCCTTCTATCCCTTTACTTTTCCACCCAACCAAGACACCCTTAAAGAAAGGGCATCCCAAGGTC
1 CTCCTTCTATCCCTTTACTTTTCCACCCAACCAAGACACCCTTAAAGAAAGGGCATCCCAAGGTC
51778820 AAAATG
66 AAAATG
51778826 CTCCTTCTATCCCTTTACTTTTCCACCCAACCAAGACACCCTTAAAGAAAGGGCATCCCAAGGTC
1 CTCCTTCTATCCCTTTACTTTTCCACCCAACCAAGACACCCTTAAAGAAAGGGCATCCCAAGGTC
51778891 AAAATG
66 AAAATG
51778897 CT
1 CT
51778899 TACCGCCTTC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.31, C:0.34, G:0.11, T:0.24
Consensus pattern (71 bp):
CTCCTTCTATCCCTTTACTTTTCCACCCAACCAAGACACCCTTAAAGAAAGGGCATCCCAAGGTC
AAAATG
Found at i:51782983 original size:15 final size:15
Alignment explanation
Indices: 51782959--51782992 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
51782949 TTAGTGTTAG
*
51782959 AAAAATTTTGAAATA
1 AAAAAATTTGAAATA
51782974 AAAAAATTTGAAATA
1 AAAAAATTTGAAATA
51782989 AAAA
1 AAAA
51782993 GAGAGTACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAAAAATTTGAAATA
Found at i:51783296 original size:33 final size:33
Alignment explanation
Indices: 51783259--51783326 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
51783249 TGTGTACCTG
51783259 ATACGTAAGAAATTTTGCTATTTGATTTAGGGT
1 ATACGTAAGAAATTTTGCTATTTGATTTAGGGT
51783292 ATACGTAAGAAATTTTGCTATTTGATTTAGGGT
1 ATACGTAAGAAATTTTGCTATTTGATTTAGGGT
51783325 AT
1 AT
51783327 TTGGTACCCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.43
Consensus pattern (33 bp):
ATACGTAAGAAATTTTGCTATTTGATTTAGGGT
Found at i:51785836 original size:30 final size:30
Alignment explanation
Indices: 51785802--51785860 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51785792 CATAAAATGT
* *
51785802 ACTTTTACAAATTTAC-ATTTTGACCCCTAA
1 ACTTTCACAAATTTACGATTTAG-CCCCTAA
*
51785832 ACTTTCACATATTTACGATTTAGCCCCTA
1 ACTTTCACAAATTTACGATTTAGCCCCTA
51785861 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTACGATTTAGCCCCTAA
Found at i:51789252 original size:18 final size:16
Alignment explanation
Indices: 51789229--51789272 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
51789219 TGTCATTATT
*
51789229 CTTATTTTTTTCTCGTTG
1 CTTATTTTTTTCT--TTA
*
51789247 CTTATTTATTTCTTTA
1 CTTATTTTTTTCTTTA
51789263 CTTATTTTTT
1 CTTATTTTTT
51789273 ATACCTTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 11 0.48
18 12 0.52
ACGTcount: A:0.11, C:0.14, G:0.05, T:0.70
Consensus pattern (16 bp):
CTTATTTTTTTCTTTA
Found at i:51789372 original size:18 final size:18
Alignment explanation
Indices: 51789333--51789373 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
51789323 TTTTAATCAT
*
51789333 TTATTATTACTATTACTT
1 TTATTATTACTATTACTA
* *
51789351 TTATTATTACTGTTTCTA
1 TTATTATTACTATTACTA
51789369 TTATT
1 TTATT
51789374 GTTTTTCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATTATTACTATTACTA
Found at i:51789906 original size:11 final size:11
Alignment explanation
Indices: 51789892--51789936 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
51789882 AGATAAATAT
51789892 TATTTTATTAA
1 TATTTTATTAA
*
51789903 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
51789916 TATTTTATTAT
1 TATTTTATTAA
51789927 TATTTTATTA
1 TATTTTATTA
51789937 GTATGTAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:51792131 original size:38 final size:38
Alignment explanation
Indices: 51792081--51792244 Score: 130
Period size: 46 Copynumber: 3.9 Consensus size: 38
51792071 TGATATGAAA
* * * *
51792081 TGTGTAAGACCATTGTTTAAAGATACCATGGTAACCTG
1 TGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTG
51792119 TGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 TGTGTAAAACCATGGTTGAAAGATACCATGGCAACC-----TG
*
51792162 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 ---TGTGTAAAACCATGGTTGAAAGATACCATGGCAACC-----T--G
*
51792210 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 -TGTGTAAAACCATGGTTGAAAGATACCATGGCAA
51792245 TGTGACATGA
Statistics
Matches: 111, Mismatches: 5, Indels: 12
0.87 0.04 0.09
Matches are distributed among these distances:
38 32 0.29
43 2 0.02
46 76 0.68
48 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (38 bp):
TGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:51792174 original size:84 final size:87
Alignment explanation
Indices: 51792070--51792289 Score: 284
Period size: 92 Copynumber: 2.5 Consensus size: 87
51792060 AGTGTGCTCT
* * *
51792070 CTGATATGAAATGTGTAAGACCATTGTTTAAAGATACCATGGTAACC-T-G-TGTGTAAAACCAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAGATGTGTAAAACCAT
51792132 GGTTGAAAGATACCATGGCAAC
66 GGTTGAAAGATACCATGGCAAC
*
51792154 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT-AGATGTGTAAA
*
51792219 ACCATGGTTGAAAGATACCATGGCAAT
61 ACCATGGTTGAAAGATACCATGGCAAC
* * * **
51792246 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
51792290 TCACGTCAAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
84 44 0.37
89 1 0.01
91 1 0.01
92 72 0.61
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.25
Consensus pattern (87 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAGATGTGTAAAACCAT
GGTTGAAAGATACCATGGCAAC
Found at i:51792186 original size:46 final size:46
Alignment explanation
Indices: 51792119--51792289 Score: 270
Period size: 46 Copynumber: 3.7 Consensus size: 46
51792109 TGGTAACCTG
*
51792119 TGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
51792165 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
** *
51792211 TGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* **
51792257 AGAATAAGACCATGGTTGAAAGATACCATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
51792290 TCACGTCAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 116 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:51792985 original size:3 final size:3
Alignment explanation
Indices: 51792972--51793096 Score: 68
Period size: 3 Copynumber: 42.7 Consensus size: 3
51792962 ACACTATTCT
* *
51792972 TTA TT- TTA TTA TTA TTA TTTA TTA TT- TTA TCA TTCC TT- TCTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A TTA T-TA TTA
* * * * *
51793017 TTG TTA TTA TTA GTA -TA CTA TTA TTA TTT TTA TTAA CGTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A -TTA TTA TTA
* *
51793063 TTA TT- TTA -TA CT- TTA TTA TTA -TA TTA TTA CTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
51793097 GCTATCATCA
Statistics
Matches: 95, Mismatches: 14, Indels: 26
0.70 0.10 0.19
Matches are distributed among these distances:
2 14 0.15
3 72 0.76
4 8 0.08
5 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:51793183 original size:3 final size:3
Alignment explanation
Indices: 51793175--51793230 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
51793165 ATTTATTTAC
**
51793175 ATT ATT ATT GCT ATT ACTT -TT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
51793220 ATT ATT ATT AT
1 ATT ATT ATT AT
51793231 CTTAAAATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 43 0.91
4 2 0.04
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:51797285 original size:41 final size:38
Alignment explanation
Indices: 51797229--51797308 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 38
51797219 TTTAAAGTAT
**
51797229 ACTAAAACTTTAATTAGTCTAAAAAAGAAGTAGTTTTAAAC
1 ACTAAAACTCGAATTAGTCT-AAAAA-AA-TAGTTTTAAAC
51797270 ACTAAAACTCGAATTAGTCTAAAAAAATAGTTTTAAAC
1 ACTAAAACTCGAATTAGTCTAAAAAAATAGTTTTAAAC
51797308 A
1 A
51797309 AAACTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 12 0.32
39 2 0.05
40 5 0.14
41 18 0.49
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (38 bp):
ACTAAAACTCGAATTAGTCTAAAAAAATAGTTTTAAAC
Found at i:51797395 original size:18 final size:18
Alignment explanation
Indices: 51797372--51797407 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51797362 TAAAAAAATT
51797372 ATAATAAAAAATAATAAA
1 ATAATAAAAAATAATAAA
* *
51797390 ATAATAAGAGATAATAAA
1 ATAATAAAAAATAATAAA
51797408 TACAATATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (18 bp):
ATAATAAAAAATAATAAA
Found at i:51801665 original size:23 final size:23
Alignment explanation
Indices: 51801635--51801681 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
51801625 TTTGAATATC
*
51801635 TAAAATCTTAGTGATATTTTCAT
1 TAAAATCTTAATGATATTTTCAT
51801658 TAAAATCTTAATGATATTTTCAT
1 TAAAATCTTAATGATATTTTCAT
51801681 T
1 T
51801682 CAACCCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (23 bp):
TAAAATCTTAATGATATTTTCAT
Found at i:51805177 original size:3 final size:3
Alignment explanation
Indices: 51805169--51805199 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
51805159 AAGATGTTGC
51805169 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
51805200 TGTAAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:51805970 original size:15 final size:16
Alignment explanation
Indices: 51805950--51805982 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
51805940 GAATATTATC
51805950 TTCTTTTTT-TGTATT
1 TTCTTTTTTCTGTATT
51805965 TTCTTTTTTCTGTATT
1 TTCTTTTTTCTGTATT
51805981 TT
1 TT
51805983 TTATCACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.06, C:0.09, G:0.06, T:0.79
Consensus pattern (16 bp):
TTCTTTTTTCTGTATT
Found at i:51806781 original size:15 final size:15
Alignment explanation
Indices: 51806761--51806791 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51806751 TAAAGTATGC
51806761 TAAAACTCTAATTAA
1 TAAAACTCTAATTAA
51806776 TAAAACTCTAATTAA
1 TAAAACTCTAATTAA
51806791 T
1 T
51806792 CTAAACAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (15 bp):
TAAAACTCTAATTAA
Found at i:51813811 original size:141 final size:135
Alignment explanation
Indices: 51813563--51813835 Score: 438
Period size: 141 Copynumber: 2.0 Consensus size: 135
51813553 AATGTGTTAA
*
51813563 TATTTTGGTTTACTAGTGAAATGATGGTTAATTGTATATATGATTGAGGCTATGTTGGTATGTTA
1 TATTTTGGTTTACTAGTGAAATGATGGTTAATTGTATATATGATTGAGGCTATGTTGGTATATTA
* *
51813628 GCCTAGTCTATAGTTTTCGTATGTGTTTAGCTTAAAATTTGGTAGCCTAAGTAGCTAAATATTAG
66 GCCTAGTCTATAATTTTCGTATGTGTTTAGCTTAAAATTTGGTAGCCTAAATAGCTAAATATTAG
51813693 TTTAG
131 TTTAG
* *
51813698 TATTTTGGTTTGCTAGTGAAATGATGGTTAATTGTATATATGTTTGTGGTTGAGGCTATGTTGGT
1 TATTTTGGTTTACTAGTGAAATGATGGTTAATTGTATATA------TGATTGAGGCTATGTTGGT
*
51813763 ATATTAGCCTAGTCTATAATTTTGGTATGTGTTTAGCTTAAAATTTGGTAGCCTAAATAGCTAAA
60 ATATTAGCCTAGTCTATAATTTTCGTATGTGTTTAGCTTAAAATTTGGTAGCCTAAATAGCTAAA
51813828 TATTAGTT
125 TATTAGTT
51813836 CAATTATGGT
Statistics
Matches: 126, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
135 39 0.31
141 87 0.69
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.44
Consensus pattern (135 bp):
TATTTTGGTTTACTAGTGAAATGATGGTTAATTGTATATATGATTGAGGCTATGTTGGTATATTA
GCCTAGTCTATAATTTTCGTATGTGTTTAGCTTAAAATTTGGTAGCCTAAATAGCTAAATATTAG
TTTAG
Found at i:51840220 original size:24 final size:23
Alignment explanation
Indices: 51840168--51840224 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
51840158 AGCTGATGAT
**
51840168 AGTAAGCTCTATGGAGCTAAAAC
1 AGTAAGCTCTAACGAGCTAAAAC
* *
51840191 AATAAGCTCTAACGAGCTGAGAAC
1 AGTAAGCTCTAACGAGCT-AAAAC
51840215 AGTAAGCTCT
1 AGTAAGCTCT
51840225 TGTAACATCC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (23 bp):
AGTAAGCTCTAACGAGCTAAAAC
Found at i:51841557 original size:21 final size:21
Alignment explanation
Indices: 51841533--51841602 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
51841523 TGATTTGAAC
51841533 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * * *
51841554 TCA-TGATATATGTGACATCCGAGC
1 TCATTGA-GT-TGTG--GTCTGAGT
*
51841578 TCATTAAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
51841599 TCAT
1 TCAT
51841603 GATGTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 4 0.11
24 9 0.26
25 2 0.06
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:51844488 original size:29 final size:29
Alignment explanation
Indices: 51844456--51844512 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
51844446 AACAAGTAAT
*
51844456 TCATGTGCAAATATTTTTAAAGTTTTATC
1 TCATATGCAAATATTTTTAAAGTTTTATC
51844485 TCATATGCAAATATTTTTAAAGTTTTAT
1 TCATATGCAAATATTTTTAAAGTTTTAT
51844513 AGTAAGTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.49
Consensus pattern (29 bp):
TCATATGCAAATATTTTTAAAGTTTTATC
Found at i:51845826 original size:24 final size:25
Alignment explanation
Indices: 51845797--51845843 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
51845787 CCCTATTTTA
*
51845797 TTTTTCTAAC-CCAT-TCCCCTTGTC
1 TTTTTC-AACTCCATCTCCACTTGTC
51845821 TTTTTCAACTCCATCTCCACTTG
1 TTTTTCAACTCCATCTCCACTTG
51845844 CGTAGTCAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 3 0.15
24 10 0.50
25 7 0.35
ACGTcount: A:0.15, C:0.36, G:0.04, T:0.45
Consensus pattern (25 bp):
TTTTTCAACTCCATCTCCACTTGTC
Found at i:51846957 original size:39 final size:39
Alignment explanation
Indices: 51846905--51846982 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
51846895 AGAGCATTGA
*
51846905 TTTTCTTTCTAATCGGTATAGGAACAACCATCAAATCAT
1 TTTTCTTTCTAATCGGTATAGGAACAACAATCAAATCAT
*
51846944 TTTTCTTTCTAATCTGTATAGGAACAACAATCAAATCAT
1 TTTTCTTTCTAATCGGTATAGGAACAACAATCAAATCAT
51846983 GACTCTTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (39 bp):
TTTTCTTTCTAATCGGTATAGGAACAACAATCAAATCAT
Found at i:51852334 original size:21 final size:21
Alignment explanation
Indices: 51852310--51852379 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
51852300 CACATACATC
51852310 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
* * * *
51852331 ATGAGCTCAAATGTCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
51852355 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
51852376 ATGA
1 ATGA
51852380 GTTCAGATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 2 0.06
21 14 0.39
22 4 0.11
23 4 0.11
24 10 0.28
25 2 0.06
ACGTcount: A:0.41, C:0.27, G:0.11, T:0.20
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:51854482 original size:44 final size:42
Alignment explanation
Indices: 51854410--51854511 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 42
51854400 TTTTGATATG
* *
51854410 TGATTTCGTGTAAGACCACGTCTGGGACA-CTGGCATCG-ATT
1 TGATTTCGTGTAAGACCACGTCTAGGACATC-GACATCGTATT
**
51854451 TGAGATTTACGTGTAAGACCATTTCTAGGACATCGACATCGTATT
1 T--GATTT-CGTGTAAGACCACGTCTAGGACATCGACATCGTATT
51854496 TGATTTCGTGTAAGAC
1 TGATTTCGTGTAAGAC
51854512 TCTGTCTGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
41 1 0.02
42 10 0.19
43 10 0.19
44 26 0.50
45 5 0.10
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTAGGACATCGACATCGTATT
Found at i:51856136 original size:50 final size:50
Alignment explanation
Indices: 51856016--51856192 Score: 225
Period size: 50 Copynumber: 3.6 Consensus size: 50
51856006 ATCTGGTTCG
* *
51856016 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACA
** * *
51856065 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACA
* * * *
51856115 CGTAGTAGCCTGCACTTAGTACTACAC-CGTGA-TTGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-TTATCCGGTACA
51856165 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
51856193 TGCGACCTCA
Statistics
Matches: 110, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 40 0.36
50 69 0.63
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGGTACA
Found at i:51856200 original size:100 final size:99
Alignment explanation
Indices: 51856018--51856200 Score: 269
Period size: 100 Copynumber: 1.8 Consensus size: 99
51856008 CTGGTTCGCA
*
51856018 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
51856083 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* ** * *
51856117 TAGTAGCCTGCACTTAGTACTACAC-CGTGATTGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
*
51856181 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
51856201 CATAATAGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
98 3 0.04
99 27 0.36
100 44 0.59
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:51865947 original size:50 final size:48
Alignment explanation
Indices: 51865829--51866004 Score: 217
Period size: 50 Copynumber: 3.5 Consensus size: 48
51865819 CTGGTTCGCA
* *
51865829 TAGTAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAA-TATCCGGTACACG
* * *
51865878 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-AAATATCCGGTACACG
* * * *
51865928 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-AA-ATATCCGGTACACG
51865979 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
51866005 TGCGACCTCA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 29 0.26
50 45 0.41
51 37 0.33
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATATCCGGTACACG
Found at i:51866012 original size:101 final size:99
Alignment explanation
Indices: 51865829--51866012 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 99
51865819 CTGGTTCGCA
* *
51865829 TAGTAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCGGTACACATAGTAGCCTGCACTTA
*
51865894 GTACTACACACGTGACCTAAACATCTGATACACG
66 GTACTACACACGCGACCTAAACATCTGATACACG
* * * *
51865928 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-AAATTATCCGGTACACATAGTAGCCTGCACT
*
51865993 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
51866013 CATAATAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 29 0.39
100 1 0.01
101 45 0.60
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAAACATCTGATACACG
Found at i:51870892 original size:43 final size:42
Alignment explanation
Indices: 51870824--51870944 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
51870814 TTTGATATGT
* *
51870824 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGA
1 GATTACATGTAAGACCATGTCTGGGACG-TGGCATCGATATT-A
* * * *
51870867 GATTACGTGTAAGACCATGTCTGGGATAGTGACATCGATATTT
1 GATTACATGTAAGACCATGTCTGGGA-CGTGGCATCGATATTA
* *
51870910 GATTACATGAAAGACCATGCCTGGGACGCTGGCAT
1 GATTACATGTAAGACCATGTCTGGGACG-TGGCAT
51870945 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 1 0.02
43 60 0.94
44 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACGTGGCATCGATATTA
Found at i:51873998 original size:14 final size:14
Alignment explanation
Indices: 51873979--51874007 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51873969 TGGTGTTCAG
51873979 CCTTTACTTGTTGA
1 CCTTTACTTGTTGA
51873993 CCTTTACTTGTTGA
1 CCTTTACTTGTTGA
51874007 C
1 C
51874008 AAACTAAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.48
Consensus pattern (14 bp):
CCTTTACTTGTTGA
Found at i:51877898 original size:21 final size:20
Alignment explanation
Indices: 51877867--51877905 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
51877857 CTTTTGAAAC
51877867 AGGGCACACACCCGTGTGGA
1 AGGGCACACACCCGTGTGGA
51877887 AGGGCAACACACCCGTGTG
1 AGGGC-ACACACCCGTGTG
51877906 TTCATAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:51879155 original size:49 final size:50
Alignment explanation
Indices: 51879090--51879218 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 50
51879080 TCAAGTCGAT
* *
51879090 GCCATGTCCCGGACATGGTCTTACGCTGACTATCA-AAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACGCTGACTATCACAAATCCAGGCCGAC
* * * * *
51879139 GCCATGTCCCAAACATGGTCTTACGCT-AGCTCTCACATATCCATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACGCTGA-CTATCACAAATCCAGGCCGAC
*
51879189 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACGCTGAC
51879219 ACATCTTGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 1 0.01
49 30 0.44
50 36 0.53
51 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACGCTGACTATCACAAATCCAGGCCGAC
Found at i:51879290 original size:46 final size:46
Alignment explanation
Indices: 51879186--51879402 Score: 203
Period size: 46 Copynumber: 4.7 Consensus size: 46
51879176 TATCCATGCC
* * * *
51879186 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTAGCCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGT-GGCA
*
51879233 -ATGCGTGTCCCAGACATGTCTTACACTGGC-CTACATCTCGTGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTGGCA
* * * *
51879278 GATGAATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTC-
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-GTGGCA
* * * *
51879324 GATGCCATGTCCTAGACATGGTGTTACACTGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGTGGCA
51879372 GATGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
51879403 ACACAAATAA
Statistics
Matches: 142, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.07
45 18 0.13
46 59 0.42
47 33 0.23
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTGGCA
Found at i:51879390 original size:140 final size:140
Alignment explanation
Indices: 51879142--51879402 Score: 348
Period size: 140 Copynumber: 1.9 Consensus size: 140
51879132 GGCCGACGCC
* *
51879142 ATGTCCCAAACATGGTCTTACGCTAGCTCTCACATATCCATGCCGATGCCATGTCCCAGACATGG
1 ATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCAGACATGG
*
51879207 TCTTACACTGACACATCTTGTAGCCAATGCGTGTCCCAGACATGTCTTACACTGGCCTACATCTC
65 TCTTACACTGACACATCTTGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGCCTACATCTC
51879272 GTGGCAGATGA
130 GTGGCAGATGA
* * * *
51879283 ATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGTCGATGCCATGTCCTAGACATGGT
1 ATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGACATGGT
* * * * **
51879346 GTTACACTGGCTC-TCATAATGTGGCTGATGCATGTCCCAGACATGTCTTACACTGGC
66 CTTACACTGACACATC-T--TGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGC
51879403 ACACAAATAA
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
137 2 0.02
138 41 0.39
140 49 0.47
141 12 0.12
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (140 bp):
ATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGACATGGT
CTTACACTGACACATCTTGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGCCTACATCTCG
TGGCAGATGA
Found at i:51880123 original size:13 final size:13
Alignment explanation
Indices: 51880105--51880129 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51880095 CTAAAAGTGC
51880105 AAAAATCATCAAG
1 AAAAATCATCAAG
51880118 AAAAATCATCAA
1 AAAAATCATCAA
51880130 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:51886703 original size:46 final size:46
Alignment explanation
Indices: 51886651--51886826 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
51886641 TGTTTGGGCA
* *
51886651 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
51886697 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
51886744 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51886790 CCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51886827 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 69 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51889815 original size:14 final size:15
Alignment explanation
Indices: 51889766--51889815 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
51889756 GTATCTTGGG
*
51889766 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
51889781 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
51889796 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51889810 TTTCTT
1 TTTCTT
51889816 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51892264 original size:46 final size:46
Alignment explanation
Indices: 51892208--51892381 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
51892198 TGTTTGGGCA
*
51892208 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
* * * * *
51892254 TCTGAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--A--CG
* * * *
51892301 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
* *
51892347 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
51892382 GGGCAGGTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 8 0.08
44 1 0.01
45 1 0.01
46 62 0.59
47 26 0.25
48 1 0.01
49 1 0.01
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
Found at i:51892363 original size:93 final size:93
Alignment explanation
Indices: 51892204--51892375 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
51892194 AGGATGTTTG
* * * *
51892204 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGACGCAAACGCCCGAACTCGTTGAG
51892269 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
51892297 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGACGCAAACGCCCGAACTCGTTGAG
51892362 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51892376 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGACGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51898297 original size:16 final size:17
Alignment explanation
Indices: 51898276--51898308 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
51898266 TCATCCACCA
51898276 AAAACAAA-AACAAAAG
1 AAAACAAACAACAAAAG
51898292 AAAACAAACAACAAAAG
1 AAAACAAACAACAAAAG
51898309 CTAGGTTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.79, C:0.15, G:0.06, T:0.00
Consensus pattern (17 bp):
AAAACAAACAACAAAAG
Found at i:51910134 original size:39 final size:40
Alignment explanation
Indices: 51910032--51910255 Score: 246
Period size: 39 Copynumber: 5.7 Consensus size: 40
51910022 TTGAATGATG
*
51910032 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
51910071 ATCCAGACTAAGAT-CCGGAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
51910112 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
51910151 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
51910190 TCCGGGTTAAGTCCCGAACGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51910229 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51910256 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
39 73 0.46
40 72 0.45
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51910217 original size:40 final size:39
Alignment explanation
Indices: 51910032--51910255 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 39
51910022 TTGAATGATG
*
51910032 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* * * * *
51910072 TCCAGACTAAGATCCGGAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAA
*
51910112 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* *
51910151 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
51910190 TCCGGGTTAAGTCCCGAACGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-AA
*
51910231 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
51910256 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 72 0.45
40 73 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:51910218 original size:79 final size:79
Alignment explanation
Indices: 51910089--51910255 Score: 230
Period size: 79 Copynumber: 2.1 Consensus size: 79
51910079 TAAGATCCGG
* * *
51910089 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTC
1 AGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAACGCATTTGTGCGAGATACTATA-AC
51910153 CGGGCTAAG-CCCGA
65 CGGGCTAAGTCCCGA
* * * *
51910167 AGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAACGCATTTGTGCGAGTTACTATAAC
1 AGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAACGCATTTGTGCGAGATACTATAAC
*
51910232 CGGGCTATGTCCCGA
65 CGGGCTAAGTCCCGA
51910247 AGGCATTTG
1 AGGCATTTG
51910256 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 30 0.38
79 33 0.42
80 15 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
AGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAACGCATTTGTGCGAGATACTATAACC
GGGCTAAGTCCCGA
Found at i:51910277 original size:79 final size:78
Alignment explanation
Indices: 51910089--51910278 Score: 190
Period size: 79 Copynumber: 2.4 Consensus size: 78
51910079 TAAGATCCGG
** * * * *
51910089 AGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTC
1 AGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAACGCATTTGTGCGAGATACTAATAC
51910153 CGGGCTAAGCCCGA
65 CGGGCTAAGCCCGA
** * * *
51910167 AGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAACGCATTTGTGCGAGTTACT-ATAA
1 AGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAACGCATTTGTGCGAGATACTAAT-A
*
51910231 CCGGGCTATGTCCCGA
64 CCGGGCTAAG-CCCGA
*
51910247 AGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 AGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
51910279 ATTCCGAAGG
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 31 0.33
79 39 0.41
80 24 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
AGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAACGCATTTGTGCGAGATACTAATACC
GGGCTAAGCCCGA
Found at i:51918118 original size:40 final size:40
Alignment explanation
Indices: 51917972--51918156 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
51917962 TTGAATGATG
* * *
51917972 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
51918012 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51918052 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51918091 TCCGGGTTAAGTCCCGAACGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51918132 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51918157 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 33 0.27
40 76 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51921234 original size:28 final size:28
Alignment explanation
Indices: 51921189--51921259 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 28
51921179 CCAGATTGTG
* * *
51921189 AAATTACCAAAATACCCCCGATAGGGTA
1 AAATGACCATAATGCCCCCGATAGGGTA
*
51921217 AAATGACCATAATG-CCCCTATAGGGTA
1 AAATGACCATAATGCCCCCGATAGGGTA
* * *
51921244 AACTGACGATTATGCC
1 AAATGACCATAATGCC
51921260 ATTGTGTTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 23 0.66
28 12 0.34
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (28 bp):
AAATGACCATAATGCCCCCGATAGGGTA
Found at i:51921242 original size:27 final size:27
Alignment explanation
Indices: 51921204--51921259 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
51921194 ACCAAAATAC
51921204 CCCCGATAGGGTAAAATGACCATAATG
1 CCCCGATAGGGTAAAATGACCATAATG
* * * *
51921231 CCCCTATAGGGTAAACTGACGATTATG
1 CCCCGATAGGGTAAAATGACCATAATG
51921258 CC
1 CC
51921260 ATTGTGTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (27 bp):
CCCCGATAGGGTAAAATGACCATAATG
Found at i:51927089 original size:6 final size:7
Alignment explanation
Indices: 51927072--51927098 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
51927062 GCATGAATGT
51927072 TTTTTTA
1 TTTTTTA
51927079 TTTTTTA
1 TTTTTTA
51927086 TTTTTTA
1 TTTTTTA
51927093 TTTTTT
1 TTTTTT
51927099 TTAAGAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:51929436 original size:27 final size:27
Alignment explanation
Indices: 51929405--51929582 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
51929395 TAAATTGTAC
51929405 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51929432 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * **
51929458 ATGCACTAAGTGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51929486 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51929514 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51929541 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51929568 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51929583 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51929573 original size:82 final size:81
Alignment explanation
Indices: 51929402--51929582 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
51929392 GATTAAATTG
* *
51929402 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51929467 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* ** *
51929483 TACGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51929547 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51929565 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51929583 GACTCAATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 19 0.22
82 67 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51937526 original size:27 final size:27
Alignment explanation
Indices: 51937495--51937672 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
51937485 TAAATTGTAC
51937495 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51937522 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * **
51937548 ATGCACTAAGTGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51937576 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51937604 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51937631 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51937658 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51937673 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51937663 original size:82 final size:81
Alignment explanation
Indices: 51937492--51937672 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
51937482 GATTAAATTG
* *
51937492 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51937557 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* ** *
51937573 TACGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51937637 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51937655 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51937673 GACTCAATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 19 0.22
82 67 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51951901 original size:40 final size:40
Alignment explanation
Indices: 51951817--51952000 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
51951807 TTGAATGCTG
* * * *
51951817 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
51951856 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
51951897 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
51951937 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
51951977 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51952001 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:51951954 original size:80 final size:81
Alignment explanation
Indices: 51951817--51951997 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
51951807 TTGAATGCTG
* * *
51951817 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
51951881 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
51951897 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
51951958 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
51951977 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
51951998 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:51952021 original size:39 final size:38
Alignment explanation
Indices: 51951818--51952037 Score: 165
Period size: 40 Copynumber: 5.6 Consensus size: 38
51951808 TGAATGCTGT
* * * * *
51951818 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * * *
51951858 CCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
51951898 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
51951938 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
51951977 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
51952017 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
51952038 CTTGAACGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.22
40 109 0.73
41 7 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:51963487 original size:53 final size:53
Alignment explanation
Indices: 51963428--51963534 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
51963418 TGCTCTCAAT
** * * *
51963428 TATGTATGTTTATTTCTTGTTTTACTATTTCCAGGATATCAATTCATGTTTAA
1 TATGTATACTTATTTCTTATTTTAATATTTCCAGGATATCAATTCATATTTAA
** *
51963481 TATGTATACTTATTTCTTATTTTAATATTTTGAGGATATTAATTCATATTTAA
1 TATGTATACTTATTTCTTATTTTAATATTTCCAGGATATCAATTCATATTTAA
51963534 T
1 T
51963535 GTGCTTAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.28, C:0.08, G:0.09, T:0.54
Consensus pattern (53 bp):
TATGTATACTTATTTCTTATTTTAATATTTCCAGGATATCAATTCATATTTAA
Found at i:51964201 original size:18 final size:18
Alignment explanation
Indices: 51964180--51964220 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
51964170 AATTTAGCAA
51964180 TTTTATTTTTA-TTATAAT
1 TTTTATTTTTAGTT-TAAT
*
51964198 TTTTGTTTTTAGTTTAAT
1 TTTTATTTTTAGTTTAAT
51964216 TTTTA
1 TTTTA
51964221 CTTTGTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTTATTTTTAGTTTAAT
Done.