Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 156 of 373
Found at i:51968383 original size:39 final size:39
Alignment explanation
Indices: 51968339--51968561 Score: 178
Period size: 40 Copynumber: 5.6 Consensus size: 39
51968329 TCCTCGTTCA
* * * * * *
51968339 AATGCCTTCGGGACATAGCCCGGTTTTAGTACCTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
51968378 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
51968417 GACTGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
51968457 GAATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * ** *
51968497 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
51968538 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51968562 CAGCATTCAA
Statistics
Matches: 150, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 34 0.23
40 108 0.72
41 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:51968505 original size:80 final size:79
Alignment explanation
Indices: 51968337--51968508 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 79
51968327 GCTCCTCGTT
* * * * * *
51968337 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTACCTCACACCATGCCTTCGGGACGTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
51968402 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * * * *
51968416 CGACTGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACAC-AATGCCCTCGGGACGTAACCCGG
** *
51968481 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
*
51968496 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
51968509 ATCTTAGTCC
Statistics
Matches: 75, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 33 0.44
80 42 0.56
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
TTTAACAACTCGCA
Found at i:51976335 original size:40 final size:40
Alignment explanation
Indices: 51976288--51976417 Score: 170
Period size: 40 Copynumber: 3.2 Consensus size: 40
51976278 ACCTCACACC
*
51976288 ATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGA
* * *
51976328 CTGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGA
* ** * *
51976368 ATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACAA
1 ATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGA
*
51976408 AGGCCTTCGG
1 ATGCCTTCGG
51976418 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGA
Found at i:51991474 original size:40 final size:40
Alignment explanation
Indices: 51991385--51991553 Score: 171
Period size: 40 Copynumber: 4.3 Consensus size: 40
51991375 TCCTCGTTCA
* * * ** *
51991385 AATGCCTTCGGGACATAGCCCGG-TTTTAGTACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
51991423 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * *
51991463 ACTGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* ** * *
51991503 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
51991543 AAGGCCTTCGG
1 AATGCCTTCGG
51991554 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 20 0.18
39 11 0.10
40 78 0.72
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:51991550 original size:80 final size:78
Alignment explanation
Indices: 51991383--51991553 Score: 198
Period size: 80 Copynumber: 2.2 Consensus size: 78
51991373 GCTCCTCGTT
* * * * *
51991383 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTACTCACACCATGCCTTCGGGACGTAACCCGGAT
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATACTCACACAATGCCCTCGGGACGTAACCCGGAT
51991448 TTAACAACTCGCA
66 TTAACAACTCGCA
* * * * *
51991461 CGACTGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAAT-ACTCACAC-AATGCCCTCGGGACGTAACCCGG
** *
51991526 ATTTAGTATCTCGCA
64 ATTTAACAACTCGCA
*
51991541 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
51991554 ATCTTAGTCC
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 26 0.35
79 7 0.09
80 42 0.56
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATACTCACACAATGCCCTCGGGACGTAACCCGGAT
TTAACAACTCGCA
Found at i:51994220 original size:5 final size:5
Alignment explanation
Indices: 51994210--51994326 Score: 50
Period size: 5 Copynumber: 22.8 Consensus size: 5
51994200 ATTATGATTT
*
51994210 TTTTA TTTTA --TTA GTTTA TTATT- TTCTTA TTTTA TTTTA TTCTT-
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TT-TTA TTTTA TTTTA TT-TTA
** *
51994254 TTAATT- TTTTA TTCACA TGTTTA -TTTA TTTTA TTTTG TTTATGA TATTTA
1 TT--TTA TTTTA TT-TTA T-TTTA TTTTA TTTTA TTTTA TTT-T-A T-TTTA
*
51994304 -GTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTT
51994327 TTGGTCTTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
3 3 0.03
4 9 0.10
5 55 0.63
6 15 0.17
7 3 0.03
8 2 0.02
ACGTcount: A:0.21, C:0.03, G:0.04, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:51994227 original size:8 final size:8
Alignment explanation
Indices: 51994201--51994328 Score: 59
Period size: 8 Copynumber: 15.2 Consensus size: 8
51994191 TTTTTTGTTA
*
51994201 TTATGATT
1 TTATTATT
*
51994209 TTTTTATT
1 TTATTATT
*
51994217 TTATTAGT
1 TTATTATT
51994225 TTATTATT
1 TTATTATT
*
51994233 TTCTTA--
1 TTATTATT
51994239 TT-TTATT
1 TTATTATT
*
51994246 TTATTCTT
1 TTATTATT
51994254 TTAATT-TT
1 TT-ATTATT
51994262 TTATTCACATGT
1 TTATT---AT-T
51994274 TTATTTATT
1 TTA-TTATT
*
51994283 TTATTTTGT
1 TTATTAT-T
*
51994292 TTATGATAT
1 TTATTAT-T
51994301 TTAGTTATT
1 TTA-TTATT
51994310 TTATTTTATT
1 TTA--TTATT
51994320 TTATT-TT
1 TTATTATT
51994327 TT
1 TT
51994329 GGTCTTATTT
Statistics
Matches: 94, Mismatches: 13, Indels: 27
0.70 0.10 0.20
Matches are distributed among these distances:
5 3 0.03
6 2 0.02
7 9 0.10
8 39 0.41
9 21 0.22
10 13 0.14
11 1 0.01
12 4 0.04
13 2 0.02
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (8 bp):
TTATTATT
Found at i:51994244 original size:13 final size:12
Alignment explanation
Indices: 51994208--51994328 Score: 52
Period size: 13 Copynumber: 9.5 Consensus size: 12
51994198 TTATTATGAT
51994208 TTTTTTATTTTA
1 TTTTTTATTTTA
*
51994220 TTAGTTTA--TTA
1 TT-TTTTATTTTA
51994231 TTTTCTTATTTTA
1 TTTT-TTATTTTA
*
51994244 TTTTATTCTTTTAA
1 TTTT-TTATTTT-A
* *
51994258 TTTTTTATTCACATG
1 TTTTTTATT---TTA
51994273 TTTATTTATTTTA
1 TTT-TTTATTTTA
**
51994286 TTTTGTTTATGATA
1 -TTT-TTTATTTTA
*
51994300 TTTAGTTATTTTA
1 TTT-TTTATTTTA
51994313 --TTTTATTTTA
1 TTTTTTATTTTA
51994323 TTTTTT
1 TTTTTT
51994329 GGTCTTATTT
Statistics
Matches: 80, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
10 9 0.11
11 9 0.11
12 6 0.08
13 31 0.39
14 15 0.19
15 3 0.04
16 7 0.09
ACGTcount: A:0.20, C:0.03, G:0.04, T:0.73
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:51994294 original size:18 final size:18
Alignment explanation
Indices: 51994271--51994326 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
51994261 TTTATTCACA
51994271 TGTTTATTTATTTTATTT
1 TGTTTATTTATTTTATTT
* *
51994289 TGTTTA-TGATATTTAGTTA
1 TGTTTATTTAT-TTTA-TTT
51994308 T-TTTATTTTATTTTATTT
1 TGTTTA-TTTATTTTATTT
51994326 T
1 T
51994327 TTGGTCTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
17 3 0.10
18 17 0.57
19 7 0.23
20 3 0.10
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (18 bp):
TGTTTATTTATTTTATTT
Found at i:51994301 original size:23 final size:21
Alignment explanation
Indices: 51994236--51994326 Score: 55
Period size: 21 Copynumber: 4.3 Consensus size: 21
51994226 TATTATTTTC
* *
51994236 TTATTTTATTTTATTCTTTTAA
1 TTATTTTATTTTATT-TTATAT
** *
51994258 TT-TTTTATTCACATGTT-TAT
1 TTATTTTATT-TTATTTTATAT
*
51994278 TTATTTTATTTTGTTTATGATAT
1 TTATTTTATTTTATTT-T-ATAT
*
51994301 TTA-GTTATTTTATTTTAT-T
1 TTATTTTATTTTATTTTATAT
51994320 TTATTTT
1 TTATTTT
51994327 TTGGTCTTAT
Statistics
Matches: 52, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
19 4 0.08
20 10 0.19
21 18 0.35
22 14 0.27
23 6 0.12
ACGTcount: A:0.21, C:0.03, G:0.04, T:0.71
Consensus pattern (21 bp):
TTATTTTATTTTATTTTATAT
Found at i:52009643 original size:38 final size:38
Alignment explanation
Indices: 52009601--52009693 Score: 132
Period size: 38 Copynumber: 2.4 Consensus size: 38
52009591 TAAAGACCCT
*
52009601 CAGGCTTCGTGCTGGTAAAATATCCAGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
** *
52009639 CAGGCTTCGTGCTGGTATTATATCCAGGATAAATCTCG
1 CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
* *
52009677 CAGGCCTAGTGCTGGTA
1 CAGGCTTCGTGCTGGTA
52009694 TTATATTTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
Found at i:52009767 original size:43 final size:43
Alignment explanation
Indices: 52009697--52009893 Score: 342
Period size: 43 Copynumber: 4.6 Consensus size: 43
52009687 GCTGGTATTA
* *
52009697 TATTTGGGCCTTCATGCCTAG-AGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
52009739 TATTCGGGACTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
52009782 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
52009825 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
52009868 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
52009894 GTAATGCCGG
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
42 18 0.12
43 129 0.88
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:52015042 original size:38 final size:38
Alignment explanation
Indices: 52014972--52015074 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 38
52014962 AAAGACCCTC
* ** *
52014972 AGGCTTCGTGCTAGTAAAATATCCGGGTTAAATCCCGA
1 AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGA
** * *
52015010 AGGCTTCGTGCTGGTATTATATGTGGGATAAATCCGGC
1 AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGA
* * *
52015048 AGGCCTAGTGCTGGTATTATATTCGGG
1 AGGCTTCGTGCTGGTATTATATCCGGG
52015075 CTTTCATGCC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGA
Found at i:52021124 original size:23 final size:23
Alignment explanation
Indices: 52021098--52021141 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
52021088 TAGAAAAGAA
52021098 AAATT-AAACTAAAAGTAAAAAGT
1 AAATTGAAA-TAAAAGTAAAAAGT
*
52021121 AAATTGCAATAAAAGTAAAAA
1 AAATTGAAATAAAAGTAAAAA
52021142 TGGCTAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (23 bp):
AAATTGAAATAAAAGTAAAAAGT
Found at i:52022770 original size:725 final size:725
Alignment explanation
Indices: 52021381--52023556 Score: 4334
Period size: 725 Copynumber: 3.0 Consensus size: 725
52021371 AAGACTAATT
52021381 ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
1 ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
*
52021446 GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGATAGTTTAT
66 GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGACAGTTTAT
52021511 TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
131 TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
52021576 TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
196 TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
52021641 CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
261 CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
52021706 GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
326 GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
52021771 AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
391 AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
52021836 ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
456 ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
52021901 TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
521 TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
52021966 ATAAAGAAACCCAAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
586 ATAAAGAAACCCAAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
52022031 ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
651 ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
52022096 AGGGTGTTTA
716 AGGGTGTTTA
52022106 ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
1 ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
52022171 GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGACAGTTTAT
66 GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGACAGTTTAT
52022236 TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
131 TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
52022301 TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
196 TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
52022366 CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
261 CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
52022431 GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
326 GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
52022496 AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
391 AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
52022561 ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
456 ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
52022626 TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
521 TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
*
52022691 ATAAAGAAACCCGAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
586 ATAAAGAAACCCAAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
52022756 ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
651 ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
52022821 AGGGTGTTTA
716 AGGGTGTTTA
52022831 ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
1 ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
52022896 GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGACAGTTTAT
66 GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGACAGTTTAT
52022961 TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
131 TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
52023026 TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
196 TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
52023091 CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
261 CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
52023156 GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
326 GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
52023221 AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
391 AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
52023286 ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
456 ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
52023351 TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
521 TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
52023416 ATAAAGAAACCCAAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
586 ATAAAGAAACCCAAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
52023481 ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
651 ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
52023546 AGGGTGTTTA
716 AGGGTGTTTA
52023556 A
1 A
52023557 ATAGACTTTG
Statistics
Matches: 1448, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
725 1448 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (725 bp):
ATCTAATTAACTAAAATTACGACAGAGATAAAAAATTGGAAAATACTTTTTAGAAAACCGATGGA
GAGGACAATACCCAAGGAAGAATCCACCTACACTTCACTTATCACTTTTGAATTAGACAGTTTAT
TCACTTGACTTAATCCATAGAAATCCCTGATTTATGTTAATATCTCTCTCGAGACTAAGAACAAC
TGACTCTAGGTTGATTAATCAAAATCTCTTTCTAATTAAAACCCCTATTGTCGCGTTAACTATAT
CAATGGATTCCCTTATTAGATTTGACTCTAATCTGATAGATTTATGTCGTCCTATCTCTAGGATT
GCATGCAATTCCACTTAATTATGAACGATCTACTCTTAAATAGGGACTTTTGCTCCTACTGAATA
AGCACGTAAAAAACCTGAATAATATCCTGGAATATTAAAACAAAGATTAAAATTCAAAATTAAGA
ATAAGAACAAGTATTTATCATATAATTCAAATGGTAATAAGATTCGTCTTAGGTTTCATCTCCCT
TAGGTATTTAGGGAGTTTAGTTCATAATAATGGAAAACACCTCAAAATTGGGAAAACAATAAAAC
ATAAAGAAACCCAAAGAACTTCAATGGATATCTTCAGTCTTAAAGTAAATCCTACTTCCGAGCTG
ATTCAGATGGCTGTCCTTGAGTATTTTCTCCTTTCTACTCTGCATGTCCCCTTTGATCCTCTTTT
AGGGTGTTTA
Found at i:52024248 original size:23 final size:24
Alignment explanation
Indices: 52024217--52024272 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
52024207 TGTTTATTTT
* *
52024217 TTTAGTTTTATTTTTATTTTTA-C
1 TTTATTTTTATGTTTATTTTTATC
*
52024240 TTTATTTTTATGTTTATTTTTATG
1 TTTATTTTTATGTTTATTTTTATC
52024264 TTTATTTTT
1 TTTATTTTT
52024273 TTAGTTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (24 bp):
TTTATTTTTATGTTTATTTTTATC
Found at i:52024255 original size:29 final size:30
Alignment explanation
Indices: 52024209--52024274 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
52024199 ATTGAATTTG
* *
52024209 TTTATTTTTTTAGTTTTATTTTTATTTTTA
1 TTTATTTTTATAGTTTTATTTTTATGTTTA
52024239 CTTTATTTTTAT-G-TTTATTTTTATGTTTA
1 -TTTATTTTTATAGTTTTATTTTTATGTTTA
52024268 TTT-TTTT
1 TTTATTTT
52024275 AGTTCTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 4 0.12
28 3 0.09
29 15 0.45
30 1 0.03
31 10 0.30
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.79
Consensus pattern (30 bp):
TTTATTTTTATAGTTTTATTTTTATGTTTA
Found at i:52024287 original size:6 final size:6
Alignment explanation
Indices: 52024215--52024272 Score: 73
Period size: 6 Copynumber: 9.8 Consensus size: 6
52024205 TTTGTTTATT
* * *
52024215 TTTTTA GTTTTA TTTTTA TTTTTA -CTTTA TTTTTA TGTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
52024262 TGTTTA TTTTT
1 TTTTTA TTTTT
52024273 TTAGTTCTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
5 4 0.09
6 39 0.91
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:52028382 original size:45 final size:44
Alignment explanation
Indices: 52028317--52028492 Score: 152
Period size: 45 Copynumber: 4.1 Consensus size: 44
52028307 AGGATTTTCA
* * *
52028317 GTATATGT-GTTCTCGTGTAAGACCACGCCTGGGACATTGGCATT
1 GTATATGTGGTT-ACGTGTAAGACCACGTCTGGGACATTGGCATC
* *
52028361 GATATATGTGGTTACGTGTAAGACCATGTTTGGGACATTGGCATC
1 G-TATATGTGGTTACGTGTAAGACCACGTCTGGGACATTGGCATC
* *
52028406 GTAT-T-TGATT-CGTGTAAGACC-C-TGCTGGGACAATGGCATC
1 GTATATGTGGTTACGTGTAAGACCACGT-CTGGGACATTGGCATC
* * * * *
52028446 G-ATATGT-GATAGCATGTAAGACCACGTATGGGACGTTGGCATT
1 GTATATGTGGTTA-CGTGTAAGACCACGTCTGGGACATTGGCATC
52028489 GTAT
1 GTAT
52028493 GATATATGTG
Statistics
Matches: 106, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
39 3 0.03
40 17 0.16
41 12 0.11
42 14 0.13
43 15 0.14
44 7 0.07
45 35 0.33
46 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (44 bp):
GTATATGTGGTTACGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:52028478 original size:83 final size:85
Alignment explanation
Indices: 52028329--52028492 Score: 201
Period size: 83 Copynumber: 1.9 Consensus size: 85
52028319 ATATGTGTTC
* * * * * *
52028329 TCGTGTAAGACCACGCCTGGGACATTGGCATTGATATATGTGGTTACGTGTAAGACCATGTTTGG
1 TCGTGTAAGACCACGCCTGGGACAATGGCATCGA-ATATGTGGATACATGTAAGACCACGTATGG
52028394 GACATTGGCATCGTATTTGAT
65 GACATTGGCATCGTATTTGAT
52028415 TCGTGTAAGACC-CTG-CTGGGACAATGGCATCG-ATATGT-GATAGCATGTAAGACCACGTATG
1 TCGTGTAAGACCAC-GCCTGGGACAATGGCATCGAATATGTGGATA-CATGTAAGACCACGTATG
* *
52028476 GGACGTTGGCATTGTAT
64 GGACATTGGCATCGTAT
52028493 GATATATGTG
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
82 3 0.04
83 36 0.53
85 16 0.24
86 13 0.19
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACCACGCCTGGGACAATGGCATCGAATATGTGGATACATGTAAGACCACGTATGGG
ACATTGGCATCGTATTTGAT
Found at i:52044435 original size:15 final size:16
Alignment explanation
Indices: 52044415--52044444 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
52044405 ATATCGATTT
52044415 CCAAAAA-ATTAGAAG
1 CCAAAAATATTAGAAG
52044430 CCAAAAATATTAGAA
1 CCAAAAATATTAGAA
52044445 AGAGAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.13, G:0.10, T:0.17
Consensus pattern (16 bp):
CCAAAAATATTAGAAG
Found at i:52049708 original size:28 final size:30
Alignment explanation
Indices: 52049677--52049736 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 30
52049667 AAAGTGATTT
*
52049677 TTGACAAAAATGTCAA-TGAGGGA-TTAAA
1 TTGACAAAAATGTAAATTGAGGGAGTTAAA
* *
52049705 TTGAGAAAAGTGTAAATTGAGGGAGTTAAA
1 TTGACAAAAATGTAAATTGAGGGAGTTAAA
52049735 TT
1 TT
52049737 TTGAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 13 0.48
29 7 0.26
30 7 0.26
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.28
Consensus pattern (30 bp):
TTGACAAAAATGTAAATTGAGGGAGTTAAA
Found at i:52050275 original size:43 final size:43
Alignment explanation
Indices: 52050227--52050373 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 43
52050217 ATCGATATGT
52050227 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
* * * *
52050270 GATTACGTGTAAGACCATGTCTAGGACATTGGTATTGTTAATCA
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTG-TATTGA
* * * * * * *
52050314 -ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT-TGA
* *
52050356 GATAACATATAAGACCAT
1 GATTACATGTAAGACCAT
52050374 ATCTGGGATA
Statistics
Matches: 83, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 77 0.93
44 4 0.05
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
Found at i:52057436 original size:20 final size:20
Alignment explanation
Indices: 52057411--52057452 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
52057401 GAACATCTTT
52057411 GGCCGAATAGAAGAAAGAAA
1 GGCCGAATAGAAGAAAGAAA
52057431 GGCCGAATAGAAGAAAGAAA
1 GGCCGAATAGAAGAAAGAAA
52057451 GG
1 GG
52057453 AAGGGAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.10, G:0.33, T:0.05
Consensus pattern (20 bp):
GGCCGAATAGAAGAAAGAAA
Found at i:52059382 original size:25 final size:25
Alignment explanation
Indices: 52059354--52059432 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
52059344 CTAATGGCCG
52059354 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
52059379 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
52059401 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
52059426 ATGTGAT
1 ATGTGAT
52059433 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:52059404 original size:47 final size:48
Alignment explanation
Indices: 52059341--52059565 Score: 391
Period size: 49 Copynumber: 4.7 Consensus size: 48
52059331 ATGATAGTAT
52059341 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
52059388 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
*
52059435 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
52059484 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
52059533 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
52059566 CCCGAAGGGC
Statistics
Matches: 174, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
47 80 0.46
49 90 0.52
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (48 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
Found at i:52059510 original size:96 final size:95
Alignment explanation
Indices: 52059341--52059565 Score: 389
Period size: 96 Copynumber: 2.3 Consensus size: 95
52059331 ATGATAGTAT
52059341 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
52059406 ATGAATGTGAAAGTG-TATATATGTGATAA
66 ATGAATGTGAAAGTGATATATATGTGATAA
*
52059435 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
52059500 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTG-ATATATATGTGATAA
52059533 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
52059566 CCCGAAGGGC
Statistics
Matches: 124, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
94 33 0.27
96 46 0.37
98 41 0.33
99 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGATATATATGTGATAA
Found at i:52059739 original size:37 final size:37
Alignment explanation
Indices: 52059683--52059761 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
52059673 CCGAGCTCTA
* * *
52059683 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
52059720 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
52059757 AAGAC
1 AAGAC
52059762 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:52061675 original size:43 final size:43
Alignment explanation
Indices: 52061627--52061729 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
52061617 TTGGTTTTCA
*
52061627 GCACTAAGTGTGCGGGCAATAAGTGTTTACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
52061670 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
52061713 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
52061730 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:52061746 original size:29 final size:29
Alignment explanation
Indices: 52061711--52061782 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
52061701 GTTGTGAGAT
* *
52061711 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
52061740 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
52061769 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
52061783 TGTGGTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:52062217 original size:40 final size:40
Alignment explanation
Indices: 52062094--52062448 Score: 358
Period size: 40 Copynumber: 8.9 Consensus size: 40
52062084 TCGAATGATG
* ** *
52062094 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
52062134 TCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TATA
* *
52062174 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* *
52062214 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
52062254 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* * * *
52062294 TCCAGGCTAAG-TCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
*
52062333 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* * *** * * * *
52062373 TCTGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* * * *
52062413 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTAGTGA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
52062449 CGTGTATTCG
Statistics
Matches: 265, Mismatches: 47, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
39 35 0.13
40 213 0.80
41 17 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
Found at i:52062352 original size:119 final size:119
Alignment explanation
Indices: 52062094--52062445 Score: 388
Period size: 119 Copynumber: 2.9 Consensus size: 119
52062084 TCGAATGATG
** * *
52062094 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAGATCCGAAGAGCA
* * * *
52062156 TTGGTGCGAGTTACTAAATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAGTGA-TATATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGCGATGTA
* *
52062214 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
* * * * *
52062279 CATGCTAGTGATATATCCAGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGCGATGTA
* * * * * *
52062333 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCTGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGA-TCCGAAGAGCAT
* * * * *
52062397 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCTAG
65 TCGTGCTAGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAG
52062446 TGACGTGTAT
Statistics
Matches: 195, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
119 103 0.53
120 67 0.34
121 19 0.10
122 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
CGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:52066001 original size:25 final size:25
Alignment explanation
Indices: 52065973--52066051 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
52065963 CTAATGGCCG
52065973 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
52065998 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
52066020 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
52066045 ATGTGAT
1 ATGTGAT
52066052 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:52066023 original size:47 final size:48
Alignment explanation
Indices: 52065960--52066179 Score: 390
Period size: 49 Copynumber: 4.6 Consensus size: 48
52065950 ATGATAGTAT
52065960 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
52066007 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
*
52066054 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
52066103 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
52066152 GGCCTAATGGCCGATGTGATGAATGTGA
1 GGCCTAATGGCCGATGTGATGAATGTGA
52066180 TAGAAGGGCA
Statistics
Matches: 170, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 80 0.47
49 90 0.53
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (48 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
Found at i:52066129 original size:96 final size:95
Alignment explanation
Indices: 52065960--52066179 Score: 388
Period size: 96 Copynumber: 2.3 Consensus size: 95
52065950 ATGATAGTAT
52065960 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
52066025 ATGAATGTGAAAGTG-TATATATGTGATAA
66 ATGAATGTGAAAGTGATATATATGTGATAA
*
52066054 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
52066119 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTG-ATATATATGTGATAA
52066152 GGCCTAATGGCCGATGTGATGAATGTGA
1 GGCCTAATGGCCGATGTGATGAATGTGA
52066180 TAGAAGGGCA
Statistics
Matches: 120, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
94 33 0.28
96 46 0.38
98 41 0.34
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGATATATATGTGATAA
Found at i:52066352 original size:37 final size:37
Alignment explanation
Indices: 52066296--52066374 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
52066286 CCGAGCTCTA
* * *
52066296 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
52066333 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
52066370 AAGAC
1 AAGAC
52066375 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:52069645 original size:110 final size:110
Alignment explanation
Indices: 52069452--52069671 Score: 431
Period size: 110 Copynumber: 2.0 Consensus size: 110
52069442 TGTGACTATT
52069452 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
52069517 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
52069562 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
*
52069627 AGAGGAACTAAATCAGATAGGGGAAAGGCGAAAGCAATCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
52069672 CCTATCCACA
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 109 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.24
Consensus pattern (110 bp):
ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
Found at i:52071670 original size:40 final size:40
Alignment explanation
Indices: 52071615--52071799 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
52071605 CGGATGATAA
* *
52071615 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
52071655 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
52071695 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
52071735 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
52071775 CCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
52071800 AGCAAGTAGT
Statistics
Matches: 138, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 137 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:52071814 original size:80 final size:79
Alignment explanation
Indices: 52071611--52071831 Score: 293
Period size: 80 Copynumber: 2.8 Consensus size: 79
52071601 TATTCGGATG
* *
52071611 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
52071675 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
52071691 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
52071756 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * * * *
52071771 ATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-AGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
52071832 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 14 0.11
80 110 0.87
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:52073366 original size:39 final size:39
Alignment explanation
Indices: 52073312--52073607 Score: 407
Period size: 39 Copynumber: 7.5 Consensus size: 39
52073302 TAATGGAGAA
*
52073312 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
52073351 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
52073390 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
52073429 TTATATCTGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
52073468 TTATATCCGGGTTAAGCCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
52073507 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
52073546 TTATATCCGGGCTGAAGTCCTGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
52073585 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
52073608 CATGCTTTGT
Statistics
Matches: 237, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 218 0.92
40 19 0.08
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:52075975 original size:39 final size:39
Alignment explanation
Indices: 52075916--52076057 Score: 178
Period size: 39 Copynumber: 3.6 Consensus size: 39
52075906 TAGTGATGTT
* *
52075916 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
52075955 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * ** *
52075994 TAACCGGACTTAAGGTCTGCAGGCTACATGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
52076033 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAGGT-CCGCAGGCT
52076058 TCGAGCTGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
38 5 0.06
39 85 0.94
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:52076066 original size:78 final size:78
Alignment explanation
Indices: 52075921--52076073 Score: 184
Period size: 78 Copynumber: 2.0 Consensus size: 78
52075911 ATGTTTATCT
* ** * * *
52075921 GGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTATGTGC
1 GGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAGC
52075986 TGGAATTATAACC
66 TGGAATTATAACC
* * *
52075999 GGACTTAAGGTCTGCAGGCTACATGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGGCT-TCGA
1 GGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTTAAAGT-CCGCAGGCTAT-GA
*
52076062 GCTGGTATTATA
64 GCTGGAATTATA
52076074 CTAGGTTTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 6 0.10
78 57 0.90
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (78 bp):
GGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAGC
TGGAATTATAACC
Found at i:52078354 original size:45 final size:45
Alignment explanation
Indices: 52078290--52078404 Score: 203
Period size: 45 Copynumber: 2.6 Consensus size: 45
52078280 AGGATCCGTA
52078290 TGTTTTCAAGGGGAGGGTCTAATTGCTGTTTTGGTTCCTTTATCG
1 TGTTTTCAAGGGGAGGGTCTAATTGCTGTTTTGGTTCCTTTATCG
* *
52078335 TGTTTTCAAGGGGAGGGTCTAATAGCTGTTTTGGTTCCTTTATTG
1 TGTTTTCAAGGGGAGGGTCTAATTGCTGTTTTGGTTCCTTTATCG
*
52078380 TGTTTTCAAAGGGAGGGTCTAATTG
1 TGTTTTCAAGGGGAGGGTCTAATTG
52078405 ATGTATTTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.17, C:0.11, G:0.30, T:0.43
Consensus pattern (45 bp):
TGTTTTCAAGGGGAGGGTCTAATTGCTGTTTTGGTTCCTTTATCG
Found at i:52078701 original size:10 final size:10
Alignment explanation
Indices: 52078683--52078713 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
52078673 TATTTTGTCC
*
52078683 TTAAGTATTA
1 TTAATTATTA
52078693 TTAATTATTA
1 TTAATTATTA
52078703 TTAATTATTA
1 TTAATTATTA
52078713 T
1 T
52078714 AGCACTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (10 bp):
TTAATTATTA
Found at i:52087976 original size:27 final size:27
Alignment explanation
Indices: 52087945--52088122 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
52087935 TAAATTGTAC
52087945 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
52087972 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
52087998 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
52088026 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
52088054 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
52088081 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
52088108 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
52088123 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:52088059 original size:82 final size:81
Alignment explanation
Indices: 52087946--52088101 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
52087936 AAATTGTACA
* *
52087946 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
52088010 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
52088027 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
52088092 TGCGAGTTGA
65 TGCGAATTGA
52088102 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:52088113 original size:82 final size:81
Alignment explanation
Indices: 52087942--52088122 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
52087932 GATTAAATTG
* *
52087942 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
52088007 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
52088023 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
52088087 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
52088105 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
52088123 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:52091668 original size:27 final size:27
Alignment explanation
Indices: 52091629--52091701 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
52091619 CTCATATCTG
* *
52091629 TAGGCTAGTATTACTGAATTGCCCCTA
1 TAGGATAGAATTACTGAATTGCCCCTA
* * *
52091656 TAGGATAGAATTACTGAAATGCCCTTG
1 TAGGATAGAATTACTGAATTGCCCCTA
* *
52091683 CAGGGTAGAATTACTGAAT
1 TAGGATAGAATTACTGAAT
52091702 ACCCTTGGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (27 bp):
TAGGATAGAATTACTGAATTGCCCCTA
Found at i:52091737 original size:27 final size:27
Alignment explanation
Indices: 52091699--52091766 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
52091689 AGAATTACTG
* *
52091699 AATACCCTTGGTTTACAACATTACCAA
1 AATACCCCTGGTTTACAAAATTACCAA
**
52091726 AATACCCCTGGTTTGTAAAATTACCAA
1 AATACCCCTGGTTTACAAAATTACCAA
52091753 AATACCCCTGGTTT
1 AATACCCCTGGTTT
52091767 GTGAAATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (27 bp):
AATACCCCTGGTTTACAAAATTACCAA
Found at i:52091810 original size:81 final size:81
Alignment explanation
Indices: 52091725--52091948 Score: 240
Period size: 81 Copynumber: 2.8 Consensus size: 81
52091715 AACATTACCA
* * * *
52091725 AAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTGAAATTATCGAAAT-ACCCTC
1 AAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATAACCCT-
*
52091789 AACCTATAAAATTACTG
65 AACCTAGAAAATTACTG
* * *
52091806 AAATACCCCTGACTTGTAAAATTACTAAAATA-CCCTCAATTTGTAAAATTATCAAAATAACCCT
1 AAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTATCAAAATAACCCT
** *
52091870 AATTTGGAAAATTACTG
65 AACCTAGAAAATTACTG
* * * **
52091887 AAATACCCTTAATTTGGAAAATTA-CAGAAATACCCCTGATTTACAAAATTA-CAGAAATAACC
1 AAATACCCCTGATTTGTAAAATTACCA-AAATACCCCTGATTTGTAAAATTATCA-AAATAACC
52091949 TTGACTTTCT
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
80 7 0.06
81 103 0.87
82 9 0.08
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
AAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATAACCCTA
ACCTAGAAAATTACTG
Found at i:52091935 original size:54 final size:54
Alignment explanation
Indices: 52091737--52092006 Score: 240
Period size: 54 Copynumber: 5.0 Consensus size: 54
52091727 ATACCCCTGG
* ** *
52091737 TTTGTAAAATTACCA-AAATACCCCTGGTTTGTGAAATTA-TCGAAATACCCTCAA
1 TTTGTAAAATTA-CAGAAATACCCCTGATTTGCAAAATTACT-GAAATACCCTTAA
** * * * * * *
52091791 CCTATAAAATTACTGAAATACCCCTGACTTGTAAAATTACTAAAATACCCTCAA
1 TTTGTAAAATTACAGAAATACCCCTGATTTGCAAAATTACTGAAATACCCTTAA
* * *
52091845 TTTGTAAAATTATCA-AAATAACCCTAATTTGGAAAATTACTGAAATACCCTTAA
1 TTTGTAAAATTA-CAGAAATACCCCTGATTTGCAAAATTACTGAAATACCCTTAA
* * * * *
52091899 TTTGGAAAATTACAGAAATACCCCTGATTTACAAAATTACAGAAATAACCTTGAC
1 TTTGTAAAATTACAGAAATACCCCTGATTTGCAAAATTACTGAAATACCCTT-AA
* * ** * *
52091954 TTTCTAAGAATTATAGAAATACCATTGGTTTGCAAAATTATTGAAATACCCTT
1 TTTGTAA-AATTACAGAAATACCCCTGATTTGCAAAATTACTGAAATACCCTT
52092007 GGTTTGTAGA
Statistics
Matches: 174, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
53 3 0.02
54 126 0.72
55 8 0.05
56 37 0.21
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACAGAAATACCCCTGATTTGCAAAATTACTGAAATACCCTTAA
Found at i:52091939 original size:27 final size:27
Alignment explanation
Indices: 52091725--52092014 Score: 187
Period size: 27 Copynumber: 10.7 Consensus size: 27
52091715 AACATTACCA
*
52091725 AAATACCCCTGGTTTGTAAAATTACCA-
1 AAATACCCCTGATTTGTAAAATTA-CAG
* *
52091752 AAATACCCCTGGTTTGTGAAATTATC-G
1 AAATACCCCTGATTTGTAAAATTA-CAG
* ** * *
52091779 AAATA-CCCTCAACCTATAAAATTACTG
1 AAATACCCCT-GATTTGTAAAATTACAG
*
52091806 AAATACCCCTGACTTGTAAAATTACTA-
1 AAATACCCCTGATTTGTAAAATTAC-AG
*
52091833 AAATA-CCCTCAATTTGTAAAATTATCA-
1 AAATACCCCT-GATTTGTAAAATTA-CAG
* * * *
52091860 AAATAACCCTAATTTGGAAAATTACTG
1 AAATACCCCTGATTTGTAAAATTACAG
* * *
52091887 AAATACCCTTAATTTGGAAAATTACAG
1 AAATACCCCTGATTTGTAAAATTACAG
**
52091914 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCCTGATTTGTAAAATTACAG
* * * *
52091941 AAATAACCTTGACTTTCTAAGAATTATAG
1 AAATACCCCTGA-TTTGTAA-AATTACAG
** * * **
52091970 AAATACCATTGGTTTGCAAAATTATTG
1 AAATACCCCTGATTTGTAAAATTACAG
* *
52091997 AAATACCCTTGGTTTGTA
1 AAATACCCCTGATTTGTA
52092015 GATTTACCAA
Statistics
Matches: 216, Mismatches: 36, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
26 10 0.05
27 171 0.79
28 19 0.09
29 16 0.07
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATACCCCTGATTTGTAAAATTACAG
Found at i:52092085 original size:27 final size:27
Alignment explanation
Indices: 52092051--52092124 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
52092041 AAATGACTAA
52092051 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-ATAGGGTAAAAAGACCGT
* **
52092078 AATGCCCCTATAGGGTAAAGTGACCGT
1 AATACCCCTATAGGGTAAAAAGACCGT
* *
52092105 AATACCCCTGTATGGTAAAA
1 AATACCCCTATAGGGTAAAA
52092125 TGACGATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.08
27 36 0.92
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAAAGACCGT
Found at i:52092530 original size:28 final size:28
Alignment explanation
Indices: 52092499--52092581 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 28
52092489 TACTGCATTA
*
52092499 GGCTTAGGCCCACACTACTACTGTATAG
1 GGCTTAGGCCCAAACTACTACTGTATAG
*
52092527 GGCTTAGGCCCAGACTATACTGATACTGTATAG
1 GGCTTAGGCCCAAAC--TAC---TACTGTATAG
52092560 GGCTTAGGCCCAAACTA-TACTG
1 GGCTTAGGCCCAAACTACTACTG
52092582 ATATTGAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
27 5 0.10
28 14 0.29
30 3 0.06
31 2 0.04
33 24 0.50
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (28 bp):
GGCTTAGGCCCAAACTACTACTGTATAG
Found at i:52092555 original size:33 final size:33
Alignment explanation
Indices: 52092517--52092621 Score: 165
Period size: 33 Copynumber: 3.2 Consensus size: 33
52092507 CCCACACTAC
52092517 TACTGTATAGGGCTTAGGCCCAGACTATACTGA
1 TACTGTATAGGGCTTAGGCCCAGACTATACTGA
*
52092550 TACTGTATAGGGCTTAGGCCCAAACTATACTGA
1 TACTGTATAGGGCTTAGGCCCAGACTATACTGA
* * * *
52092583 TATTGAATAGGGCTTTGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTTAGGCCCAGACTATACTGA
52092616 TACTGT
1 TACTGT
52092622 GTTATTTACT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (33 bp):
TACTGTATAGGGCTTAGGCCCAGACTATACTGA
Found at i:52092918 original size:17 final size:18
Alignment explanation
Indices: 52092880--52092929 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
52092870 AGTCTAGGAA
*
52092880 AACACGAGTTTTCAAAAT
1 AACACGAGTTTTCAAAAG
52092898 AACACGA-TTTT-ATAAAG
1 AACACGAGTTTTCA-AAAG
*
52092915 AACACGAGCTTTCAA
1 AACACGAGTTTTCAA
52092930 CAACAAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 1 0.04
17 14 0.52
18 11 0.41
19 1 0.04
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (18 bp):
AACACGAGTTTTCAAAAG
Found at i:52100930 original size:48 final size:48
Alignment explanation
Indices: 52100864--52101348 Score: 862
Period size: 48 Copynumber: 10.1 Consensus size: 48
52100854 GCGGAAATTG
*
52100864 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52100912 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52100960 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
52101008 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52101056 ATGTATGAGATAAGTATATGTGATAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
52101104 ATGTATGAGATATGTATATGTTGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52101152 ATGTATGAGATAAGTATAAGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52101200 ATGTATGAGATAAGTATATGTGGTAAGGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52101248 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
52101296 ATGTATGAGATATGTATATGTGGTAAAACCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52101344 ATGTA
1 ATGTA
52101349 GGCGATGTGT
Statistics
Matches: 419, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 419 1.00
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:52101603 original size:37 final size:37
Alignment explanation
Indices: 52101495--52101603 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
52101485 GGAAATATAT
*
52101495 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
52101532 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
52101569 TCCGAGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
52101604 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:52103396 original size:40 final size:39
Alignment explanation
Indices: 52103365--52103574 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
52103355 GGACTAAGAT
* *
52103365 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
52103405 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
52103445 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
52103485 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
52103525 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
52103564 CCGAAGGCATT
1 CCGAAGGCATT
52103575 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:52103528 original size:120 final size:120
Alignment explanation
Indices: 52103312--52103574 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
52103302 TTGAATGCTG
* *
52103312 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
52103376 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
52103432 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
52103495 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
52103551 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
52103575 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:52103594 original size:79 final size:80
Alignment explanation
Indices: 52103365--52103609 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
52103355 GGACTAAGAT
* * * * * * * ** *
52103365 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
52103428 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
52103445 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
52103510 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
52103525 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
52103589 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
52103603 CCGAAGG
1 CCGAAGG
52103610 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:52110970 original size:40 final size:39
Alignment explanation
Indices: 52110939--52111148 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
52110929 GGACTAAGAT
* *
52110939 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
52110979 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
52111019 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
52111059 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
52111099 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
52111138 CCGAAGGCATT
1 CCGAAGGCATT
52111149 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:52111102 original size:120 final size:120
Alignment explanation
Indices: 52110886--52111148 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
52110876 TTGAATGCTG
* *
52110886 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
52110950 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
52111006 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
52111069 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
52111125 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
52111149 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:52111168 original size:79 final size:80
Alignment explanation
Indices: 52110939--52111183 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
52110929 GGACTAAGAT
* * * * * * * ** *
52110939 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
52111002 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
52111019 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
52111084 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
52111099 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
52111163 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
52111177 CCGAAGG
1 CCGAAGG
52111184 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:52113274 original size:15 final size:17
Alignment explanation
Indices: 52113254--52113285 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
52113244 TGATCACTTG
52113254 GTTGTG-GTTGA-GTTA
1 GTTGTGTGTTGATGTTA
52113269 GTTGTGTGTTGATGTTA
1 GTTGTGTGTTGATGTTA
52113286 TTAAGGGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (17 bp):
GTTGTGTGTTGATGTTA
Found at i:52114470 original size:15 final size:15
Alignment explanation
Indices: 52114450--52114478 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
52114440 GTATTGTTGC
52114450 TTGATAACACGGTGA
1 TTGATAACACGGTGA
52114465 TTGATAACACGGTG
1 TTGATAACACGGTG
52114479 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:52117235 original size:26 final size:27
Alignment explanation
Indices: 52117178--52117295 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
52117168 TAGATAAGTT
52117178 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
52117205 ATAGAATTATCGAAATA-CCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
52117231 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
52117258 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
52117285 GTAAAATTACC
1 GTAGAATTACC
52117296 ATTTTTCCCC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.29
27 55 0.71
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:52117252 original size:53 final size:54
Alignment explanation
Indices: 52117178--52117291 Score: 160
Period size: 53 Copynumber: 2.1 Consensus size: 54
52117168 TAGATAAGTT
* * *
52117178 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCGAAATACCC-TGTAGG
1 GTAGAAATACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGG
* * *
52117231 GTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGG
52117285 GTA-AAAT
1 GTAGAAAT
52117292 TACCATTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 46 0.85
54 8 0.15
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGG
Found at i:52123950 original size:27 final size:27
Alignment explanation
Indices: 52123916--52124070 Score: 197
Period size: 27 Copynumber: 5.7 Consensus size: 27
52123906 TGGATAAGTT
52123916 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
52123943 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
52123970 GTAGAATTACCGAAATACCCCTAT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
52123996 GATAGAATTACCGAAATACCCTTATAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* *
52124024 GTAGAAATACCAAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
52124050 GAAAGAATTACCGAGATACCC
1 G-TAGAATTACCGAAATACCC
52124071 TTGTGGGATA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
26 4 0.04
27 105 0.95
28 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:52124002 original size:54 final size:54
Alignment explanation
Indices: 52123916--52124088 Score: 242
Period size: 54 Copynumber: 3.2 Consensus size: 54
52123906 TGGATAAGTT
*
52123916 GTAGAATTACCGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGT-AGGATAGAATTACCGAAATACCCTTGTAGG
* *
52123970 GTAGAATTACCGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGG
* * * *
52124024 GTAGAAATACCAAAATACCCCTGTAGGAAAGAATTACCGAGATACCCTTGT-GG
1 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGG
*
52124077 GATAAAATTACC
1 G-TAGAATTACC
52124089 ATTTTGCCCC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 6 0.06
54 100 0.94
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGG
Found at i:52124057 original size:81 final size:81
Alignment explanation
Indices: 52123917--52124088 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 81
52123907 GGATAAGTTG
* * * **
52123917 TAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTGTAGGAAAGAATTACCG
52123982 AAATACCCCTATAGGA
66 AAATACCCCTATAGGA
* *
52123998 TAGAATTACCGAAATACCCTTATAGGGTAGAAATACCAAAATACCCCTGTAGGAAAGAATTACCG
1 TAGAATTACCGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTGTAGGAAAGAATTACCG
* * * *
52124063 AGATACCCTTGTGGGA
66 AAATACCCCTATAGGA
*
52124079 TAAAATTACC
1 TAGAATTACC
52124089 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCTGTAGGAAAGAATTACCG
AAATACCCCTATAGGA
Found at i:52124085 original size:27 final size:27
Alignment explanation
Indices: 52123920--52124088 Score: 157
Period size: 27 Copynumber: 6.3 Consensus size: 27
52123910 TAAGTTGTAG
*
52123920 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAA
* *
52123947 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAA
* *
52123974 AATTACCGAAATACCCCTAT-AGGATAG
1 AATTACCGAAATACCCCTGTAAGG-TAA
* * *
52124001 AATTACCGAAATACCCTTATAGGGTAGA
1 AATTACCGAAATACCCCTGTAAGGTA-A
* *
52124029 AA-TACCAAAATACCCCTGT-AGGAAA
1 AATTACCGAAATACCCCTGTAAGGTAA
* * *
52124054 GAATTACCGAGATACCCTTGT-GGGATAA
1 -AATTACCGAAATACCCCTGTAAGG-TAA
52124082 AATTACC
1 AATTACC
52124089 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.01
26 7 0.06
27 106 0.88
28 6 0.05
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAA
Found at i:52124783 original size:27 final size:26
Alignment explanation
Indices: 52124739--52124790 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
52124729 CTCGCTGTAA
*
52124739 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
52124766 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
52124791 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:52126683 original size:40 final size:40
Alignment explanation
Indices: 52126614--52126706 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
52126604 CAATTATTTG
* *
52126614 TGGCACTTAGTGTGTGATTCGACAAAGCTTCGGGTATATA
1 TGGCACTTAGTGTGTCATTCAACAAAGCTTCGGGTATATA
* *
52126654 TGGCACTTAGTGTG-CATTTCAACATAGCTTTGGGTATATA
1 TGGCACTTAGTGTGTCA-TTCAACAAAGCTTCGGGTATATA
52126694 TGGCACTTAGTGT
1 TGGCACTTAGTGT
52126707 CCGATTTGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.02
40 47 0.98
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (40 bp):
TGGCACTTAGTGTGTCATTCAACAAAGCTTCGGGTATATA
Found at i:52128871 original size:30 final size:30
Alignment explanation
Indices: 52128836--52128929 Score: 179
Period size: 30 Copynumber: 3.1 Consensus size: 30
52128826 GGGTAGACCA
52128836 TGTGTCACACACGGCCTAGACACACATCCG
1 TGTGTCACACACGGCCTAGACACACATCCG
52128866 TGTGTCACACACGGCCTAGACACACATCCG
1 TGTGTCACACACGGCCTAGACACACATCCG
*
52128896 TGTGTCACACACGGCCTAGACACACGTCCG
1 TGTGTCACACACGGCCTAGACACACATCCG
52128926 TGTG
1 TGTG
52128930 CCTACCCGTG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.24, C:0.35, G:0.22, T:0.18
Consensus pattern (30 bp):
TGTGTCACACACGGCCTAGACACACATCCG
Found at i:52128875 original size:17 final size:17
Alignment explanation
Indices: 52128855--52128907 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
52128845 CACGGCCTAG
52128855 ACACACATCCGTGTGTC
1 ACACACATCCGTGTGTC
** *
52128872 ACACACGGCC-T-AG--
1 ACACACATCCGTGTGTC
52128885 ACACACATCCGTGTGTC
1 ACACACATCCGTGTGTC
52128902 ACACAC
1 ACACAC
52128908 GGCCTAGACA
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
13 8 0.31
14 1 0.04
15 2 0.08
16 1 0.04
17 14 0.54
ACGTcount: A:0.28, C:0.38, G:0.17, T:0.17
Consensus pattern (17 bp):
ACACACATCCGTGTGTC
Found at i:52129349 original size:17 final size:17
Alignment explanation
Indices: 52129327--52129366 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
52129317 AAGGAAAAGG
52129327 AGTAAGCATAAAAGCTT
1 AGTAAGCATAAAAGCTT
52129344 AGTAAGCATAAAAGCTT
1 AGTAAGCATAAAAGCTT
52129361 AGTAAG
1 AGTAAG
52129367 GTGCATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (17 bp):
AGTAAGCATAAAAGCTT
Found at i:52129723 original size:47 final size:47
Alignment explanation
Indices: 52129641--52129898 Score: 210
Period size: 47 Copynumber: 5.5 Consensus size: 47
52129631 GTGCTGGTGT
* *
52129641 CATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGAAGCCGATG
* *
52129687 CCATTTCCCAGACATGGTCTTACACTGACTATCATCTCGTAA-CCGGTG
1 -CATGTCCCAGACATGGTCTTACACTGACTATCATCTCG-AAGCCGATG
* * *
52129735 CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGACTAT-CATCTCGAAGCCGATG
* * * * * * *
52129781 CATGTCCTAGACAT-GTCTTACACT-AGCTCTCGTCTCCATGTCAATG
1 CATGTCCCAGACATGGTCTTACACTGA-CTATCATCTCGAAGCCGATG
* * * **
52129827 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGACTATCAT-CTCGAAGCCGATG
*
52129875 CATGTCCCAGACAT-GTCTTCCACT
1 CATGTCCCAGACATGGTCTTACACT
52129899 AGCTCACACA
Statistics
Matches: 175, Mismatches: 25, Indels: 23
0.78 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 71 0.41
47 74 0.42
48 25 0.14
49 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAAGCCGATG
Found at i:52129893 original size:140 final size:140
Alignment explanation
Indices: 52129641--52129898 Score: 358
Period size: 140 Copynumber: 1.8 Consensus size: 140
52129631 GTGCTGGTGT
* * *
52129641 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATTTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCAATGCCATGTCCCAGACATGGTC
* *
52129706 TTACACTGACTATCATCTCGTAACCGGTGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC
66 TTACACTGACTATCATATCGTAACCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC
52129771 GAGGCCGATG
131 GAGGCCGATG
* * * *
52129781 CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCCATGTCAATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCT-CAAGTCAATGCCATGTCCCAGACATGGT
* * ** *
52129845 CTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTCCACT
65 CTTACACTGACTATCAT-ATCGTAACCGATGCATGTCCCAGACATGTCTTACACT
52129899 AGCTCACACA
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
139 18 0.18
140 83 0.81
141 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCAATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATATCGTAACCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC
GAGGCCGATG
Found at i:52137013 original size:40 final size:40
Alignment explanation
Indices: 52136960--52137172 Score: 172
Period size: 40 Copynumber: 5.5 Consensus size: 40
52136950 ACAACAATTT
* * * *
52136960 GGCTATTTGTGGCACTTAGTGTGTGATTCGACATAGCTTC
1 GGCTATGTATGGCACTTAGTGTGTGATTTGAGATAGCTTC
** * *
52137000 TACTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTC
1 GGCTATGTATGGCACTTAGTGTGTGATTTGAGATAGCTTC
*** * **
52137040 GGCTATGTACCACACTTAGTGTGCGA-GAGAGATA---T-
1 GGCTATGTATGGCACTTAGTGTGTGATTTGAGATAGCTTC
* * * *
52137075 --C-AAGTATGGAACTTAGTGTGTGATTTGACATAGTTTC
1 GGCTATGTATGGCACTTAGTGTGTGATTTGAGATAGCTTC
* * *
52137112 TGCTATATATGGCACTTATTGTGTGATTTGAGATAGCTTC
1 GGCTATGTATGGCACTTAGTGTGTGATTTGAGATAGCTTC
*
52137152 GGCTATGTATGACACTTAGTG
1 GGCTATGTATGGCACTTAGTG
52137173 CACGAGATAT
Statistics
Matches: 131, Mismatches: 34, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
32 16 0.12
33 6 0.05
36 2 0.02
39 7 0.05
40 100 0.76
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (40 bp):
GGCTATGTATGGCACTTAGTGTGTGATTTGAGATAGCTTC
Found at i:52137118 original size:112 final size:108
Alignment explanation
Indices: 52136973--52137202 Score: 343
Period size: 112 Copynumber: 2.1 Consensus size: 108
52136963 TATTTGTGGC
52136973 ACTTAGTGTGTGATTCGACATAGCTTCTACTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 ACTTAGTGTGTGATTCGACATAGCTTCTACTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
52137038 TCGGCTATGTACCACACTTAGTGTGCGAGAGAGATATCAAGTATGGA
66 TCGGCTATGTACCACACTTA--GTGC-A-AGAGATATCAAGTATGGA
* * * * *
52137085 ACTTAGTGTGTGATTTGACATAGTTTCTGCTATATATGGCACTTATTGTGTGATTTGAGATAGCT
1 ACTTAGTGTGTGATTCGACATAGCTTCTACTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
** * *
52137150 TCGGCTATGTATGACACTTAGTGCACGAGATATCAAGTATGGC
66 TCGGCTATGTACCACACTTAGTGCAAGAGATATCAAGTATGGA
52137193 ACTTAGTGTG
1 ACTTAGTGTG
52137203 CGAGACATTG
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
108 26 0.24
109 1 0.01
110 4 0.04
112 78 0.72
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.35
Consensus pattern (108 bp):
ACTTAGTGTGTGATTCGACATAGCTTCTACTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
TCGGCTATGTACCACACTTAGTGCAAGAGATATCAAGTATGGA
Found at i:52137864 original size:16 final size:16
Alignment explanation
Indices: 52137843--52137889 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
52137833 TTTTCTAAAG
52137843 TTTTTCATTAAGGGCA
1 TTTTTCATTAAGGGCA
*
52137859 TTTTTC--TAA-AG--
1 TTTTTCATTAAGGGCA
52137870 TTTTTCATTAAGGGCA
1 TTTTTCATTAAGGGCA
52137886 TTTT
1 TTTT
52137890 AGTAATTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 10
0.67 0.06 0.28
Matches are distributed among these distances:
11 6 0.25
13 4 0.17
14 4 0.17
16 10 0.42
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (16 bp):
TTTTTCATTAAGGGCA
Found at i:52137873 original size:26 final size:27
Alignment explanation
Indices: 52137828--52137889 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
52137818 GACATGGTTA
52137828 GGCATTTTTCTAAAGTTTTTCATTAAG
1 GGCATTTTTCTAAAGTTTTTCATTAAG
52137855 GGCATTTTTCTAAAGTTTTTCATTAAG
1 GGCATTTTTCTAAAGTTTTTCATTAAG
52137882 GGCATTTT
1 GGCATTTT
52137890 AGTAATTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.48
Consensus pattern (27 bp):
GGCATTTTTCTAAAGTTTTTCATTAAG
Found at i:52138843 original size:43 final size:42
Alignment explanation
Indices: 52138791--52138943 Score: 184
Period size: 43 Copynumber: 3.6 Consensus size: 42
52138781 AGATTACATT
* * *
52138791 TAAGACCATATCTAGGATATGGTATCGATATTAGACATTCGTG
1 TAAGACCATATCTGGGATATGGCATCGATA-TAGACATTCATG
* *
52138834 TAAGACCATATATGGGATATGGCATCGGTATGAGAC-TTCATG
1 TAAGACCATATCTGGGATATGGCATCGATAT-AGACATTCATG
* * *
52138876 TAAGACCATAGCTGGGCTATTGGCATCGATA-CGACATTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATAGACATT-CATG
52138919 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
52138944 TGGTACGGTA
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
41 3 0.03
42 30 0.32
43 61 0.65
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATAGACATTCATG
Found at i:52142966 original size:49 final size:50
Alignment explanation
Indices: 52142832--52142979 Score: 174
Period size: 50 Copynumber: 3.0 Consensus size: 50
52142822 ATGATCTATT
* * **
52142832 GTGAGGCCGCATGTGTAGTACTAAGTGCAGGCTACTACGAGTATTAGATG
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATG
* * * * *
52142882 GTGAGGTCACGTGTGTAGTACTAAGTGGAGACTACTATGTGTACCAGACT-
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGA-TG
* *
52142932 GT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGAT
52142980 AGCTTCGGCT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 39 0.48
50 41 0.50
51 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (50 bp):
GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATG
Found at i:52148631 original size:40 final size:40
Alignment explanation
Indices: 52148440--52148624 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
52148430 TTGAATGATG
* ** * *
52148440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
52148480 TCCGGACTAAGAT-CCGAAGGCAGTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
52148520 TCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
52148559 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
52148600 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
52148625 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52148646 original size:79 final size:79
Alignment explanation
Indices: 52148493--52148657 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
52148483 GGACTAAGAT
* * **
52148493 CCGAAGGCAGTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
52148558 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
52148572 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGAGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
52148635 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
52148651 CCGAAGG
1 CCGAAGG
52148658 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:52156601 original size:39 final size:40
Alignment explanation
Indices: 52156499--52156683 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
52156489 TTGAATGATG
* ** *
52156499 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
52156538 ATCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
52156579 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
52156618 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
52156657 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
52156684 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:52156705 original size:79 final size:79
Alignment explanation
Indices: 52156553--52156716 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
52156543 GACTAAGATT
* * **
52156553 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
52156618 TCCGGGTTAAGTCC
66 TCCGGGTTAAATCC
* *
52156632 CGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
52156695 ATATCC-GGTTAAATTC
63 AAATCCGGGTTAAATCC
52156711 CGAAGG
1 CGAAGG
52156717 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAATCC
Found at i:52159355 original size:43 final size:42
Alignment explanation
Indices: 52159291--52159405 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
52159281 AGTACTACAC
* **
52159291 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * *
52159333 CAATGCCAATAGCCCAGCTATGGTTTTACACGAAATCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * *
52159376 CGATGTCATATCCTAGATATGGTCTTACAC
1 CAATGCCATATCCCAGATATGGTCTTACAC
52159406 ATAGCCTCGT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:52161891 original size:45 final size:44
Alignment explanation
Indices: 52161842--52161974 Score: 127
Period size: 45 Copynumber: 3.0 Consensus size: 44
52161832 AAGATCTCTG
52161842 ATATGTGTTCTCGTGTAAGACCTCATCTGGGACATTGGCATCGAT
1 ATATGTGTT-TCGTGTAAGACCTCATCTGGGACATTGGCATCGAT
*
52161887 ATATGTGGTTAT-GTGTAAGA-CT-ATGTCTGGGACATCGGCATCG-T
1 ATATGT-GTT-TCGTGTAAGACCTCA--TCTGGGACATTGGCATCGAT
* * *
52161931 AT-T-TGATTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGAT
1 ATATGTGTTTCGTGTAAGACCTC-ATCTGGGACATTGGCATCGAT
52161973 AT
1 AT
52161975 GAGATAGCAT
Statistics
Matches: 74, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
40 1 0.01
41 26 0.35
42 5 0.07
43 2 0.03
44 5 0.07
45 31 0.42
46 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (44 bp):
ATATGTGTTTCGTGTAAGACCTCATCTGGGACATTGGCATCGAT
Found at i:52161956 original size:41 final size:41
Alignment explanation
Indices: 52161852--52162003 Score: 137
Period size: 41 Copynumber: 3.6 Consensus size: 41
52161842 ATATGTGTTC
* *
52161852 TCGTGTAAGACC-TCATCTGGGACATTGGCATCGATATATGTGGT
1 TCGTGTAAGACCAT-GTCTGGGACA-TGGCATCGATAT-T-TGAT
* *
52161896 TATGTGTAAGACTATGTCTGGGACATCGGCATCG-TATTTGAT
1 T-CGTGTAAGACCATGTCTGGGACAT-GGCATCGATATTTGAT
* **
52161938 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGAGAT
1 TCGTGTAAGACCATGTCTGGGACA-TGGCATCGATATTTGAT
* *
52161980 AGCATGTAAGACCATGTCTGGGAC
1 -TCGTGTAAGACCATGTCTGGGAC
52162004 GTTGGCATTG
Statistics
Matches: 90, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
41 27 0.30
42 11 0.12
43 21 0.23
44 5 0.06
45 25 0.28
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATGGCATCGATATTTGAT
Found at i:52162011 original size:300 final size:299
Alignment explanation
Indices: 52161459--52162064 Score: 915
Period size: 300 Copynumber: 2.0 Consensus size: 299
52161449 TATAACTTCA
* * *
52161459 TTTCAACCGAGTTACGACATCTGAAAGACCCGTACGAACCTTACGAATAGCTAGGATACATATGT
1 TTTCAACCAAGTTACGACATCCGAAAGACCCGTACGAACCTTACGAATAGCTAGGATACATAAGT
* * * *
52161524 CATGACATAGGATTTCTGATATGTGTTCTCGTGTAAGACCACATCTGAGACGTTGGCATCTATAT
66 CATGACATAAGATCTCTGATATGTGTTCTCGTGTAAGACCACATCTGAGACATTGGCATCGATAT
*
52161589 ATGTGGTTACATGTAAGACCATGTCTGGGACATCGGCATTGTATTTCATTCGTGTAAGACCCTGT
131 ATGTGGTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTTCATTCGTGTAAGACCCTGT
*
52161654 CTGGGACAATGGCATCGATATGAGATAGCATGTAAGAACACATCTAGGATATTGGCATTGTACAA
196 CTGGGACAATGGCATCGATATGAGATAGCATGTAAGAACACATCTAGGACATTGGCATTGTACAA
52161719 TATATGTGATTAACCGAGTATCCTATTCAATTCCGAATCG
261 TATATGTGATTAACCGAGTATCCTATTCAATTCCGAAT-G
* * * * * *
52161759 TTTCAACTAAGTTATGACATCCGAAAGCCCCGTACGAACCTTAGGAATAGCTTGGATACGTAAGT
1 TTTCAACCAAGTTACGACATCCGAAAGACCCGTACGAACCTTACGAATAGCTAGGATACATAAGT
* *
52161824 CATGACATAAGATCTCTGATATGTGTTCTCGTGTAAGACCTCATCTGGGACATTGGCATCGATAT
66 CATGACATAAGATCTCTGATATGTGTTCTCGTGTAAGACCACATCTGAGACATTGGCATCGATAT
** * *
52161889 ATGTGGTTATGTGTAAGACTATGTCTGGGACATCGGCATCGTATTTGATTCGTGTAAGACCCTGT
131 ATGTGGTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTTCATTCGTGTAAGACCCTGT
* * ** * * *
52161954 CTGGGACAGTGGCATCGATATGAGATAGCATGTAAGACCATGTCTGGGACGTTGGCATTGTACGA
196 CTGGGACAATGGCATCGATATGAGATAGCATGTAAGAACACATCTAGGACATTGGCATTGTACAA
* * *
52162019 TATATGTGATTATCCGAGTGTCCTATTCAATTCTGAATG
261 TATATGTGATTAACCGAGTATCCTATTCAATTCCGAATG
*
52162058 GTTCAAC
1 TTTCAAC
52162065 GGGCAATGAT
Statistics
Matches: 274, Mismatches: 32, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
299 7 0.03
300 267 0.97
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (299 bp):
TTTCAACCAAGTTACGACATCCGAAAGACCCGTACGAACCTTACGAATAGCTAGGATACATAAGT
CATGACATAAGATCTCTGATATGTGTTCTCGTGTAAGACCACATCTGAGACATTGGCATCGATAT
ATGTGGTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTTCATTCGTGTAAGACCCTGT
CTGGGACAATGGCATCGATATGAGATAGCATGTAAGAACACATCTAGGACATTGGCATTGTACAA
TATATGTGATTAACCGAGTATCCTATTCAATTCCGAATG
Found at i:52166879 original size:41 final size:43
Alignment explanation
Indices: 52166766--52166898 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 43
52166756 AAGATTTCTG
* *
52166766 ATATGTGTTCTCGTGTAAGA-CCTCATCTGGGACATTGGCATCGAT
1 ATATGTGAT-TCGTGTAAGACCCT-GTCTGGGACA-TGGCATCGAT
** *
52166811 ATATGTGATTACGTGTAAGACTATGTCTAGGACATCGGCATCG-T
1 ATATGTGATT-CGTGTAAGACCCTGTCTGGGACAT-GGCATCGAT
52166855 AT-T-TGATTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 ATATGTGATTCGTGTAAGACCCTGTCTGGGACA-TGGCATCGAT
52166897 AT
1 AT
52166899 GAGATAGCAT
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
41 27 0.36
42 9 0.12
43 1 0.01
44 5 0.07
45 32 0.43
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
ATATGTGATTCGTGTAAGACCCTGTCTGGGACATGGCATCGAT
Found at i:52177712 original size:42 final size:42
Alignment explanation
Indices: 52177601--52177714 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
52177591 TACTCCATCA
* * ** *
52177601 ATGCCATATCCCATATATGGTCTTACATAGTATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * *
52177643 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATTTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
52177686 ATGCCATATCCCAGATATGGTCTTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
52177715 TAGCGTCGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:52184330 original size:47 final size:49
Alignment explanation
Indices: 52184276--52184483 Score: 140
Period size: 49 Copynumber: 4.3 Consensus size: 49
52184266 TCTCAAACAT
* *
52184276 GGTCTTACACTGGCTAGGATAT-T-GAAG-TCGATGCCCTGTCCCAAATA
1 GGTCTTACACTGGCTAGCATATATCGAAGCT-GATGCCATGTCCCAAATA
* ** *
52184323 GGTCTTACACTGACTTTCATATATCGAAGCTGATGCTATGTCCCAAATA
1 GGTCTTACACTGGCTAGCATATATCGAAGCTGATGCCATGTCCCAAATA
** * * * *
52184372 GGTCTTACACTGGCTCTCATCTATC-AATG-TCGATACCATATCCCAGATA
1 GGTCTTACACTGGCTAGCATATATCGAA-GCT-GATGCCATGTCCCAAATA
* * * * ** * * * *
52184421 GGTTTTACACTAGCTTGTATATCCCGAGGCTGAT-TCATGTCCCAGACA
1 GGTCTTACACTGGCTAGCATATATCGAAGCTGATGCCATGTCCCAAATA
*
52184469 TGTCTTACACTGGCT
1 GGTCTTACACTGGCT
52184484 CACATACCAC
Statistics
Matches: 126, Mismatches: 28, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
47 18 0.14
48 27 0.21
49 78 0.62
50 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (49 bp):
GGTCTTACACTGGCTAGCATATATCGAAGCTGATGCCATGTCCCAAATA
Found at i:52189113 original size:30 final size:30
Alignment explanation
Indices: 52189079--52189139 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
52189069 TCCTTAACGC
52189079 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
52189109 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
52189139 A
1 A
52189140 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:52190600 original size:25 final size:25
Alignment explanation
Indices: 52190566--52190632 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
52190556 AATCAAAATG
* * *
52190566 AGAATTAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
52190591 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
52190616 AGAATCAAAATTAGAAT
1 AGAATCAGAATCAGAAT
52190633 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.22
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:52191016 original size:22 final size:23
Alignment explanation
Indices: 52190988--52191049 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
52190978 GCAAATACGT
*
52190988 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
52191010 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
52191032 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
52191050 CAGAAGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:52192243 original size:27 final size:27
Alignment explanation
Indices: 52191481--52192236 Score: 1026
Period size: 27 Copynumber: 28.0 Consensus size: 27
52191471 GGGGCAAAGT
* * * *
52191481 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* ** *
52191508 GGTAATTCTATCCTGTAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
52191535 AATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191562 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
52191589 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191616 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191643 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191670 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191697 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191724 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191751 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191778 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191805 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191832 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191859 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52191886 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191913 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191940 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52191967 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
52191994 AGTAATTCAACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
52192021 AGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52192048 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52192075 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52192102 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
52192129 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
52192156 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
52192183 GGTATTTCTATCCTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
52192210 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
52192237 AATAATTTTG
Statistics
Matches: 668, Mismatches: 61, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 668 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:52192258 original size:27 final size:27
Alignment explanation
Indices: 52192228--52192397 Score: 121
Period size: 27 Copynumber: 6.3 Consensus size: 27
52192218 TACCCTATAG
* *
52192228 GGGTATTTCAATAATTTTGTAAATCAA
1 GGGTATTTCAATAATTTTGCAAATCGA
** * * * *
52192255 GGGTAAAAT-GATAATTCTGTAAATCGG
1 GGGT-ATTTCAATAATTTTGCAAATCGA
* * *
52192282 GGGTACTTT-GATAATTTTACAAGTCGA
1 GGGTA-TTTCAATAATTTTGCAAATCGA
* * *
52192309 GAGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAATAATTTTGCAAATCGA
*
52192336 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAATAATTTTGCAAATC-GA
** *
52192363 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAATAATTTTGCAAATCGA
*
52192390 GGATATTT
1 GGGTATTT
52192398 GGGTAATTTT
Statistics
Matches: 116, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.04
27 108 0.93
28 3 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTGCAAATCGA
Found at i:52192333 original size:54 final size:54
Alignment explanation
Indices: 52192275--52192456 Score: 165
Period size: 54 Copynumber: 3.4 Consensus size: 54
52192265 ATAATTCTGT
* * *
52192275 AAATCGGGGGTACTTTGA-TAATTTTAC-AAGTCGAGAGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAAACT-GAGAGTATTTCAGTAATTTTAC
* * *
52192329 AAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAACTGAGAGTATTTCAGTAATTTTAC
* ** * * * * *
52192383 AAATCGAGGATATTTGGGTAATTTTATAAACTGGGGGAACTTT-GGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAACTGAGAGTA-TTTCAGTAATTTTAC
* *
52192437 AACT-GGGGGTATTTCAGTAA
1 AAATCGAGGGTATTTCAGTAA
52192457 ATTGGTAAAC
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
53 16 0.15
54 85 0.79
55 6 0.06
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACTGAGAGTATTTCAGTAATTTTAC
Found at i:52192459 original size:27 final size:26
Alignment explanation
Indices: 52192293--52192456 Score: 141
Period size: 27 Copynumber: 6.1 Consensus size: 26
52192283 GGTACTTTGA
* *
52192293 TAATTTTACAAGTCGAGAGTATTTCAG
1 TAATTTTACAACT-GAGGGTATTTCAG
*
52192320 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAACT-GAGGGTATTTCAG
* *
52192347 TAATTTTGCAAACTGAGGGTATTTCGG
1 TAATTTTAC-AACTGAGGGTATTTCAG
* * **
52192374 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAACT-GAGGGTATTTCAG
* * * *
52192401 TAATTTTATAAACTGGGGGAACTTT-GG
1 TAATTTTA-CAACTGAGGGTA-TTTCAG
*
52192428 TAATTTTACAACTGGGGGTATTTCAG
1 TAATTTTACAACTGAGGGTATTTCAG
52192454 TAA
1 TAA
52192457 ATTGGTAAAC
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.03
26 17 0.15
27 86 0.75
28 9 0.08
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (26 bp):
TAATTTTACAACTGAGGGTATTTCAG
Found at i:52194635 original size:27 final size:27
Alignment explanation
Indices: 52194596--52194770 Score: 217
Period size: 27 Copynumber: 6.5 Consensus size: 27
52194586 CTGATTGATC
*
52194596 AAAATGATTGTTTTACCC-TATGTGGT
1 AAAATGACTGTTTTACCCTTATGTGGT
* * **
52194622 AAAATGACTGGTTTGCCCTTACATGGT
1 AAAATGACTGTTTTACCCTTATGTGGT
* * *
52194649 AAAATAACTGTTTTGCCCTTATATGGT
1 AAAATGACTGTTTTACCCTTATGTGGT
*
52194676 AAAATGACTGATTTACCCTTATGTGGT
1 AAAATGACTGTTTTACCCTTATGTGGT
*
52194703 AAAATGACTGTTTTTCCCTTATGTGGT
1 AAAATGACTGTTTTACCCTTATGTGGT
* * *
52194730 AAAATGACTATTTTGCCCCTATGTGGT
1 AAAATGACTGTTTTACCCTTATGTGGT
*
52194757 AAGATGACTGTTTT
1 AAAATGACTGTTTT
52194771 TCCTAATGTG
Statistics
Matches: 129, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
26 15 0.12
27 114 0.88
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (27 bp):
AAAATGACTGTTTTACCCTTATGTGGT
Found at i:52195123 original size:18 final size:18
Alignment explanation
Indices: 52195097--52195181 Score: 109
Period size: 18 Copynumber: 4.7 Consensus size: 18
52195087 AGGACTTGTA
*
52195097 TACTATTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
52195115 TACTGTTACTACACTGAT
1 TACTGTTACTGCACTGAT
*
52195133 TATTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
52195151 TACTATTACTGCACTG-T
1 TACTGTTACTGCACTGAT
*
52195168 CTATTGTTACTGCA
1 -TACTGTTACTGCA
52195182 ATGGACCAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
17 1 0.02
18 57 0.98
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:52195149 original size:36 final size:36
Alignment explanation
Indices: 52195102--52195181 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
52195092 TTGTATACTA
*
52195102 TTACTGCACTGATTACTGTTACTACACTGAT-TATTG
1 TTACTGCACTGATTACTATTACTACACTG-TCTATTG
*
52195138 TTACTGCACTGATTACTATTACTGCACTGTCTATTG
1 TTACTGCACTGATTACTATTACTACACTGTCTATTG
52195174 TTACTGCA
1 TTACTGCA
52195182 ATGGACCAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
35 1 0.02
36 40 0.98
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (36 bp):
TTACTGCACTGATTACTATTACTACACTGTCTATTG
Found at i:52204113 original size:53 final size:53
Alignment explanation
Indices: 52204031--52204139 Score: 182
Period size: 53 Copynumber: 2.1 Consensus size: 53
52204021 TACTGTATAA
* * *
52204031 TTTAGTTGAGCTCCTGTCAGAGTTCGACTTGCGTAGTAGATGGGATGAAAAAC
1 TTTAGTTGAGCTCCTATCAAAGTTCGACTTGCATAGTAGATGGGATGAAAAAC
*
52204084 TTTAGTTGAGCTCCTATCAAAGTTTGACTTGCATAGTAGATGGGATGAAAAAC
1 TTTAGTTGAGCTCCTATCAAAGTTCGACTTGCATAGTAGATGGGATGAAAAAC
52204137 TTT
1 TTT
52204140 GTTCCTTCGT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (53 bp):
TTTAGTTGAGCTCCTATCAAAGTTCGACTTGCATAGTAGATGGGATGAAAAAC
Found at i:52205622 original size:22 final size:22
Alignment explanation
Indices: 52205581--52205623 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
52205571 CACTAAGTCA
* *
52205581 ACAGAACGGCTCAATACCATAG
1 ACAGAACGGCTAAAGACCATAG
*
52205603 ACAGAACGGCTAAAGGCCATA
1 ACAGAACGGCTAAAGACCATA
52205624 AATATCGTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
ACAGAACGGCTAAAGACCATAG
Found at i:52212138 original size:20 final size:18
Alignment explanation
Indices: 52212097--52212138 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
52212087 ATTTAAGTAC
*
52212097 AATTAATTATTTTATAAT
1 AATTAATTATTTTATAAG
52212115 AATTAATTATTTTCGATAAG
1 AATTAATTATTTT--ATAAG
52212135 AATT
1 AATT
52212139 TACCCGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
20 8 0.38
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (18 bp):
AATTAATTATTTTATAAG
Found at i:52216185 original size:25 final size:27
Alignment explanation
Indices: 52216134--52216190 Score: 93
Period size: 25 Copynumber: 2.2 Consensus size: 27
52216124 CGTCGGCCAC
52216134 AAGGT-AATAATGGTTATTTGTTAACT
1 AAGGTAAATAATGGTTATTTGTTAACT
52216160 AAGGTAAAT-ATGGTTA-TTGTTAACT
1 AAGGTAAATAATGGTTATTTGTTAACT
52216185 AAGGTA
1 AAGGTA
52216191 TTGATACGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 15 0.50
26 12 0.40
27 3 0.10
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.39
Consensus pattern (27 bp):
AAGGTAAATAATGGTTATTTGTTAACT
Found at i:52221004 original size:28 final size:27
Alignment explanation
Indices: 52220947--52221097 Score: 239
Period size: 27 Copynumber: 5.5 Consensus size: 27
52220937 TAAATTGTGC
*
52220947 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
52220974 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
52221002 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
52221029 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
52221057 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
52221084 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
52221098 AGACTTAATA
Statistics
Matches: 118, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 65 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:52221011 original size:55 final size:55
Alignment explanation
Indices: 52220947--52221097 Score: 257
Period size: 55 Copynumber: 2.7 Consensus size: 55
52220937 TAAATTGTGC
*
52220947 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
52221002 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
52221057 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGC
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGC
52221098 AGACTTAATA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:52242520 original size:47 final size:47
Alignment explanation
Indices: 52242459--52243039 Score: 1036
Period size: 47 Copynumber: 12.3 Consensus size: 47
52242449 CAGCCAAGAC
*
52242459 AGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
52242506 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
52242553 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
52242600 AGTGTATATATGTGATACGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
52242647 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
52242694 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
52242743 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
52242790 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
52242837 AGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
52242884 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
52242931 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
52242978 AGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
52243025 AGTGTATATATGTGA
1 AGTGTATATATGTGA
52243040 CCGAGTGGCC
Statistics
Matches: 517, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 470 0.91
49 47 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:52243057 original size:42 final size:42
Alignment explanation
Indices: 52242954--52243081 Score: 130
Period size: 42 Copynumber: 2.9 Consensus size: 42
52242944 AATAAGGCCT
* * *
52242954 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCT
1 AATGGCCAACGTGATGAATGTGAAAGTGTATATA--TG-T--GACCG
* *
52243001 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACCG
1 AATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGACCG
* * * *
52243043 AGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 AATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGA
52243082 TAAGTCCCGA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 37 0.50
44 1 0.01
45 2 0.03
47 34 0.46
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (42 bp):
AATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGACCG
Found at i:52243260 original size:37 final size:37
Alignment explanation
Indices: 52243204--52243282 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
52243194 CCGAGCTCTA
* *
52243204 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
52243241 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
52243278 AAGAC
1 AAGAC
52243283 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:52248209 original size:25 final size:25
Alignment explanation
Indices: 52248177--52248224 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
52248167 TTATAATATG
* * *
52248177 AAAATGACTATTTTGCCCTTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
52248202 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
52248225 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:52248417 original size:25 final size:26
Alignment explanation
Indices: 52248344--52248415 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
52248334 GAGGAAGTGC
* * * *
52248344 AAAAGGGCTAT-GCCCAAGTTTACCG
1 AAAAGGGCTTTCGCCCCAGTTTATCA
* * *
52248369 AAAAGGGCTTTTGTCCTAGTTTATCA
1 AAAAGGGCTTTCGCCCCAGTTTATCA
52248395 AAAAGGGCTTTCGCCCCAGTT
1 AAAAGGGCTTTCGCCCCAGTT
52248416 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 10 0.26
26 28 0.74
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTCGCCCCAGTTTATCA
Found at i:52248673 original size:31 final size:31
Alignment explanation
Indices: 52248635--52248713 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
52248625 TCATTACAGT
52248635 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
52248666 AAAGGCTTCAGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
52248697 GAAGGCTTGGGCCCAGT
1 AAAGGCTTCGGCCCAGT
52248714 ATCTACTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:52253058 original size:42 final size:42
Alignment explanation
Indices: 52253006--52253263 Score: 311
Period size: 42 Copynumber: 6.1 Consensus size: 42
52252996 TCGATGCCTC
* *
52253006 TGTCCCAGACATGGTCTTACACGAAATTAGATATGATGTCGA
1 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTCGA
* * * * * *
52253048 TGTCCTAGACATGGACTTACACGAAATAAGATCCGATGCCGA
1 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTCGA
52253090 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATG-CTGA
1 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTC-GA
* * * * * * *
52253132 TGTCCTAGACGTGGCCTTACTCAAAATCAGATACGATGCCAA
1 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTCGA
* * *
52253174 TGTCCCATACATGGTCTTACAGAAAATTAGATACGATGTTGA
1 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTCGA
* * *
52253216 TGTCGCAGACATGGTCTTACACAAAATCAAATACGATGTCGA
1 TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTCGA
52253258 TGTCCC
1 TGTCCC
52253264 TTTAGAAACA
Statistics
Matches: 180, Mismatches: 34, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
41 1 0.01
42 178 0.99
43 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACAAAATTAGATACGATGTCGA
Found at i:52260190 original size:42 final size:42
Alignment explanation
Indices: 52260138--52260389 Score: 346
Period size: 42 Copynumber: 6.0 Consensus size: 42
52260128 CCTCTGTCTT
* * *
52260138 AGACAGGGTCTTACACGAAATCAGATATGATGCCTATGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
* *
52260180 AAACATGGTCTTACATGAAATCAGATACGATGCCGATGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
*
52260222 AGACATGGTCTTACACGAAATCAGATACGATGCAGATGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
* * *
52260264 AGAAATGATCTTACA-GAAAATCAGATAAGATGCCGATGTCCC
1 AGACATGGTCTTACACG-AAATCAGATACGATGCCGATGTCCC
* *
52260306 AGACATGGTCTTATA-GAAAATCAGATACGATGTCGATGTCCC
1 AGACATGGTCTTACACG-AAATCAGATACGATGCCGATGTCCC
* * *
52260348 AGACATGGTTTTACACAAAATCAGATACGATGCCGATATCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
52260390 TTTAGAAACA
Statistics
Matches: 186, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.01
42 185 0.99
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
Done.