Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 170 of 373
Found at i:56965191 original size:39 final size:39
Alignment explanation
Indices: 56964987--56965209 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
56964977 TTGAATGCTG
* * * * * *
56964987 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
56965027 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
56965066 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
56965107 TCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
56965147 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
56965186 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
56965210 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 40 0.26
40 102 0.67
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:56977775 original size:80 final size:79
Alignment explanation
Indices: 56977691--56977868 Score: 214
Period size: 79 Copynumber: 2.2 Consensus size: 79
56977681 GGACTAGGAT
*
56977691 CCGAAGGCATTTGTACGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTACGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
56977755 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
56977771 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
56977836 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
*
56977850 CCGAAGGCATTTGAACGAG
1 CCGAAGGCATTTGTACGAG
56977869 GAGCTATATC
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 42 0.51
80 37 0.45
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:56977842 original size:39 final size:39
Alignment explanation
Indices: 56977638--56977860 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
56977628 TTGAATGCTG
* * * * * *
56977638 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * * *
56977678 TCCGGACTAGGAT-CCGAAGGCATTTGTACGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
56977717 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
56977758 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
56977798 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
56977837 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
56977861 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 40 0.26
40 102 0.67
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:56977880 original size:79 final size:80
Alignment explanation
Indices: 56977691--56977895 Score: 195
Period size: 79 Copynumber: 2.6 Consensus size: 80
56977681 GGACTAGGAT
* * * *
56977691 CCGAAGGCATTTGTACGAGAT-AC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTCGAACGAG-TGACTAAA-TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATAC
* *
56977754 TAAATCCGGGTTAAGTC
64 TAAAACCGGGCTAAGTC
** * * * * *
56977771 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTA
1 CCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTA
*
56977835 AAACCGGGCTATGTC
66 AAACCGGGCTAAGTC
* * *
56977850 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
56977896 TACGTGATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
78 15 0.15
79 49 0.48
80 36 0.35
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTA
AAACCGGGCTAAGTC
Found at i:56982967 original size:14 final size:15
Alignment explanation
Indices: 56982943--56982972 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
56982933 GGATATCAAA
56982943 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
56982958 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
56982972 A
1 A
56982973 AGTTAAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:56984088 original size:39 final size:40
Alignment explanation
Indices: 56984038--56984126 Score: 126
Period size: 39 Copynumber: 2.2 Consensus size: 40
56984028 TTGAATGAAG
*
56984038 AACGCCACTAAAGAACGAGCATTAGCGGCGC-TTTTCAAA
1 AACGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTCAAA
** * *
56984077 AACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTTTTAAA
1 AACGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTCAAA
56984117 AACGCCGCTA
1 AACGCCGCTA
56984127 TATGTACACT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 27 0.61
40 17 0.39
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (40 bp):
AACGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTCAAA
Found at i:56984142 original size:40 final size:40
Alignment explanation
Indices: 56984058--56984152 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
56984048 AAGAACGAGC
** *
56984058 ATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGATTGAGT
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGATACACT
* *
56984097 ATTAGCGGCGCTTTTTTAAAAACGCCGCTATATG-TACACT
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTA-AAGATACACT
*
56984137 TTTAGCGGCGCTTTTT
1 ATTAGCGGCGCTTTTT
56984153 AGAAAGCGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 11 0.23
40 35 0.73
41 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGATACACT
Found at i:56984638 original size:49 final size:49
Alignment explanation
Indices: 56984585--56984683 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
56984575 AATTGTAAAT
56984585 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
1 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
56984634 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
1 GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
56984683 G
1 G
56984684 GTTTACGATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.46
Consensus pattern (49 bp):
GAGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAG
Found at i:56984837 original size:22 final size:22
Alignment explanation
Indices: 56984788--56984872 Score: 66
Period size: 21 Copynumber: 3.9 Consensus size: 22
56984778 GTTAAAAGTT
*
56984788 AGGGTTTAAGTTTTAGGGGGGTT-
1 AGGGTTTAAGGTTTA--GGGGTTA
*
56984811 GGGGTTTAAGGTTTAGGGGTTA
1 AGGGTTTAAGGTTTAGGGGTTA
* * ** *
56984833 AGGGTTTATGTTTTATTGTTTA
1 AGGGTTTAAGGTTTAGGGGTTA
*
56984855 A-GGTTTAAGGGTTAGGGG
1 AGGGTTTAAGGTTTAGGGG
56984873 CTAGGAATTT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
21 17 0.36
22 17 0.36
23 13 0.28
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.41
Consensus pattern (22 bp):
AGGGTTTAAGGTTTAGGGGTTA
Found at i:56990630 original size:43 final size:43
Alignment explanation
Indices: 56990582--56990765 Score: 316
Period size: 43 Copynumber: 4.3 Consensus size: 43
56990572 GGTCATAATT
* *
56990582 TTTAGCGGCGTTTGTAGGAAAAGCGTCGCTAAAGGTCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
*
56990625 TTTAGCGGCGTTTGTGGG-AAAGCGCCACTAAAGGTCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
*
56990667 TTTAGCGGCGTTTGTGGGATAAGCGCCGCTAAAGGTCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
*
56990710 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
56990753 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
56990766 TTTTCATAAA
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 40 0.30
43 93 0.70
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
Found at i:56990712 original size:85 final size:86
Alignment explanation
Indices: 56990582--56990765 Score: 316
Period size: 85 Copynumber: 2.2 Consensus size: 86
56990572 GGTCATAATT
*
56990582 TTTAGCGGCGTTTGTAGGAAAAGCGTCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGG-AAA
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAA
56990646 GCGCCACTAAAGGTCATGACC
66 GCGCCACTAAAGGTCATGACC
* *
56990667 TTTAGCGGCGTTTGTGGGATAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAA
* *
56990732 GCGCCGCTAAAGGTCATGACT
66 GCGCCACTAAAGGTCATGACC
56990753 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
56990766 TTTTCATAAA
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 58 0.62
86 35 0.38
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.27
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAA
GCGCCACTAAAGGTCATGACC
Found at i:56994069 original size:55 final size:56
Alignment explanation
Indices: 56993928--56994070 Score: 137
Period size: 55 Copynumber: 2.6 Consensus size: 56
56993918 ATGTAGGCCA
* * * * ** *
56993928 ACGCCCATGTTAATTTAATAGGTTCACCCAC-GGTTGCTTGGCACGGGTGTGTCGC
1 ACGCCCGTGCTAATTTGACAGGTTCACCCACGGGTTGCAAGGCACGGGCGTGTCGC
* * ** *
56993983 ATGCCCGTGTTAATTTGACAGGTTCGGCCACGGGTT-CAAGGTACGGGCGTGTCGC
1 ACGCCCGTGCTAATTTGACAGGTTCACCCACGGGTTGCAAGGCACGGGCGTGTCGC
** *
56994038 ACGCCCGTGCTGTTTTGGCAGGTTCACCCACGG
1 ACGCCCGTGCTAATTTGACAGGTTCACCCACGG
56994071 CCATGTCGCA
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
55 66 0.94
56 4 0.06
ACGTcount: A:0.16, C:0.27, G:0.31, T:0.27
Consensus pattern (56 bp):
ACGCCCGTGCTAATTTGACAGGTTCACCCACGGGTTGCAAGGCACGGGCGTGTCGC
Found at i:56999611 original size:3 final size:3
Alignment explanation
Indices: 56999603--56999655 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
56999593 TTAATCCCAA
*
56999603 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
56999651 AAT AA
1 AAT AA
56999656 CCCATATTGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:57002747 original size:17 final size:18
Alignment explanation
Indices: 57002716--57002749 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
57002706 GGTGATGGGT
*
57002716 GTTACAACAATAGCATAA
1 GTTACAACAAGAGCATAA
57002734 GTTA-AACAAGAGCATA
1 GTTACAACAAGAGCATA
57002750 CTAAGGAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (18 bp):
GTTACAACAAGAGCATAA
Found at i:57007392 original size:20 final size:20
Alignment explanation
Indices: 57007341--57007392 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
57007331 CGGCTGGCCT
*
57007341 ACACGGGCATGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
57007361 ACACAGGG-GTGTCCCTAGCC
1 ACAC-GGGCGTGTCCCAAGCC
57007381 ACACGGGCGTGT
1 ACACGGGCGTGT
57007393 GGCTCTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 22 0.79
21 3 0.11
ACGTcount: A:0.21, C:0.35, G:0.31, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:57007704 original size:47 final size:47
Alignment explanation
Indices: 57007604--57007763 Score: 144
Period size: 48 Copynumber: 3.4 Consensus size: 47
57007594 CCTCGTACCC
* * *** * *
57007604 TGTTTGGAACATGGCATCAGCAATCTTGAGAGAGCCAGTGTAAGACCA
1 TGTTTGGAACATGGCATC-GGACTCAACAGAAAGCTAGTGTAAGACCA
* *
57007652 TGTTTGGAACATGGCATCGGATTGAGACA-AAAGCTAGTGTAAGACCA
1 TGTTTGGAACATGGCATCGGACTCA-ACAGAAAGCTAGTGTAAGACCA
* *
57007699 TGTTT-GAGACATGGCATCGGCCTCAACATGTAAGCTAGTGTAAGACCA
1 TGTTTGGA-ACATGGCATCGGACTCAACA-GAAAGCTAGTGTAAGACCA
** *
57007747 TGCCTGGGACATGGCAT
1 TGTTTGGAACATGGCAT
57007764 TGGTAATTTA
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
46 5 0.05
47 38 0.41
48 48 0.52
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
TGTTTGGAACATGGCATCGGACTCAACAGAAAGCTAGTGTAAGACCA
Found at i:57017789 original size:13 final size:13
Alignment explanation
Indices: 57017771--57017798 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
57017761 CCTCGCCAGG
57017771 GACACGCCCGTGT
1 GACACGCCCGTGT
57017784 GACACGCCCGTGT
1 GACACGCCCGTGT
57017797 GA
1 GA
57017799 GTCGTGCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:57031270 original size:42 final size:42
Alignment explanation
Indices: 57031167--57031283 Score: 105
Period size: 42 Copynumber: 2.7 Consensus size: 42
57031157 ACCTAGATTA
* * * * *
57031167 TGTGTAAGACCATATCTAGGATATGGCATC-ATTATGAGATTT
1 TGTGTAAGACCATAGCTGGGAT-TGACATCGATTATGAAATGT
* *
57031209 TGTTTAAGATCAT-GTCTGGGATGTGACATCGA-TATGAAATGT
1 TGTGTAAGACCATAG-CTGGGAT-TGACATCGATTATGAAATGT
57031251 TGTGTAAGACCATAGCTGGGTTATTGACATCGA
1 TGTGTAAGACCATAGCTGGG--ATTGACATCGA
57031284 AACGAGATCT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
42 47 0.78
43 11 0.18
44 2 0.03
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTGTAAGACCATAGCTGGGATTGACATCGATTATGAAATGT
Found at i:57033509 original size:14 final size:14
Alignment explanation
Indices: 57033490--57033519 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
57033480 ACCCCTTCAT
*
57033490 TCCCTCATTCATCA
1 TCCCTCATCCATCA
57033504 TCCCTCATCCATCA
1 TCCCTCATCCATCA
57033518 TC
1 TC
57033520 ATTCTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:57034225 original size:6 final size:6
Alignment explanation
Indices: 57034214--57034400 Score: 172
Period size: 6 Copynumber: 30.8 Consensus size: 6
57034204 AACCAAAATG
*
57034214 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
57034262 AGTAA-C AGAATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
57034311 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
57034359 AGAATC AGAATC AGAATT ACGTGAT- AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
57034401 GTGAATGCAA
Statistics
Matches: 150, Mismatches: 15, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 12 0.08
6 124 0.83
7 10 0.07
8 4 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:57034229 original size:30 final size:30
Alignment explanation
Indices: 57034214--57034400 Score: 244
Period size: 30 Copynumber: 6.4 Consensus size: 30
57034204 AACCAAAATG
*
57034214 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
57034244 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
57034274 AGAATCAAAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
57034299 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
57034329 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
57034359 AGAATCAGAATCAGAATTACGTGATAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
57034390 AGAATCAGAAT
1 AGAATCAGAAT
57034401 GTGAATGCAA
Statistics
Matches: 138, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
24 2 0.01
25 18 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 90 0.65
31 23 0.17
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:57034314 original size:85 final size:85
Alignment explanation
Indices: 57034214--57034400 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
57034204 AACCAAAATG
57034214 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
57034279 CAAAATCAGAATTAGGTGAC
66 CAAAATCAGAATTACGTGAC
*
57034299 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
57034364 CAGAATCAGAATTACGTGAT
66 CAAAATCAGAATTACGTGAC
57034384 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
57034401 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAAAATCAGAATTACGTGAC
Found at i:57034583 original size:27 final size:27
Alignment explanation
Indices: 57034518--57034575 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
57034508 AGCATGGCTG
* *
57034518 CCAGA-ACAGATATTGTGACGGAGTCA
1 CCAGATACAGATATTGTGACAGAGCCA
*
57034544 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGACAGAGCCA
57034571 CCAGA
1 CCAGA
57034576 ATTAGATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATATTGTGACAGAGCCA
Found at i:57034804 original size:22 final size:22
Alignment explanation
Indices: 57034756--57034814 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
57034746 GTAAATACGT
*
57034756 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
57034778 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
57034800 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
57034815 TAATAACAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:57034967 original size:27 final size:26
Alignment explanation
Indices: 57034902--57034984 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
57034892 TCGATCGGTC
* ** *
57034902 AACAGATATTGTGACAGAGTAACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
57034928 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
57034955 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
57034982 AAC
1 AAC
57034985 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:57035215 original size:27 final size:27
Alignment explanation
Indices: 57035185--57035371 Score: 207
Period size: 27 Copynumber: 6.9 Consensus size: 27
57035175 GGCAAAAGGG
* * *
57035185 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
57035212 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
57035239 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
57035266 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
57035293 TAATTCTATCCTATAAGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
57035319 GTAATTCTACCCTATAGGGGTATTTCGGA
1 -TAATTCTACCCTACAAGGGTATTTC-GA
* *
57035348 -AAGTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
57035372 AGTAATTTCA
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 135 0.99
29 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:57035285 original size:54 final size:54
Alignment explanation
Indices: 57035183--57035371 Score: 263
Period size: 54 Copynumber: 3.5 Consensus size: 54
57035173 GGGGCAAAAG
* * *
57035183 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
57035237 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
57035291 GGTAATTCTATCCTATAAGGGTATTTC-AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTC
* * *
57035345 GGAAAGTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57035372 AGTAATTTCA
Statistics
Matches: 119, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.01
54 118 0.99
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:57035327 original size:81 final size:82
Alignment explanation
Indices: 57035185--57035371 Score: 234
Period size: 81 Copynumber: 2.3 Consensus size: 82
57035175 GGCAAAAGGG
* * * * * * *
57035185 TAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
57035250 TACAAGGGTATTTC-GA
66 TACAAGGGTATTTCGGA
* * * *
57035266 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
* *
57035331 TATAGGGGTATTTCGGA
66 TACAAGGGTATTTCGGA
*
57035348 -AAGTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
57035372 AGTAATTTCA
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 88 0.98
82 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCGGA
Found at i:57035413 original size:27 final size:27
Alignment explanation
Indices: 57035383--57035954 Score: 769
Period size: 27 Copynumber: 21.2 Consensus size: 27
57035373 GTAATTTCAC
* *
57035383 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57035410 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
57035437 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
57035464 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57035491 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
57035518 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57035545 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57035572 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57035599 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
57035626 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57035653 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
57035680 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
57035707 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57035734 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
57035761 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57035788 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57035815 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
57035842 AATCGAGGATAAAACGGTAATTCTGTAA
1 AATCGAGGGTAAAACGGTAATTCTGT-A
57035870 AAT-GAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57035896 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57035923 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57035950 AATCG
1 AATCG
57035955 GGAGTACTTT
Statistics
Matches: 491, Mismatches: 42, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.02
27 473 0.96
28 9 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:57038110 original size:39 final size:39
Alignment explanation
Indices: 57038067--57038258 Score: 330
Period size: 39 Copynumber: 4.9 Consensus size: 39
57038057 CCGGGCATAT
* *
57038067 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
57038106 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* *
57038145 TTCCAGCACATAGCCTACGGACCCTAAGTCCTGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
57038184 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
57038223 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
57038259 CACAGCAAAT
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 143 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:57042183 original size:40 final size:40
Alignment explanation
Indices: 57042100--57042362 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
57042090 TTGAATGCTG
* * * * * *
57042100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
57042140 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
57042180 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
57042220 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57042260 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57042300 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57042339 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57042363 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:57042382 original size:79 final size:80
Alignment explanation
Indices: 57042139--57042397 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
57042129 AAGTGAATAT
* * * * * *
57042139 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
57042203 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
57042219 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
57042284 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
57042299 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
57042363 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
57042378 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
57042398 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:57050130 original size:40 final size:40
Alignment explanation
Indices: 57050034--57050297 Score: 311
Period size: 40 Copynumber: 6.7 Consensus size: 40
57050024 TTGAATGCTG
* * * * *
57050034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAA
* * * *
57050074 TCC-GGATAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAA
*
57050113 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
*
57050153 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
57050193 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * *
57050233 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * *
57050272 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
57050298 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
39 57 0.28
40 143 0.71
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:57050315 original size:79 final size:80
Alignment explanation
Indices: 57050086--57050330 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
57050076 CGGATAAGAT
* * * * * ** * *
57050086 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
57050150 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
57050166 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
57050231 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
57050246 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
57050310 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
57050324 CCGAAGG
1 CCGAAGG
57050331 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:57051751 original size:26 final size:27
Alignment explanation
Indices: 57051716--57051777 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
57051706 AGATATATGC
* *
57051716 CCCTGTGAGGTAAAATGACTGTTACG-
1 CCCTATGAGGTAAAATGACTGATACGA
*
57051742 CCCTATGAGGTAAAATGACTGATATGA
1 CCCTATGAGGTAAAATGACTGATACGA
57051769 CCCTATGAG
1 CCCTATGAG
57051778 ATGTATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 23 0.72
27 9 0.28
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (27 bp):
CCCTATGAGGTAAAATGACTGATACGA
Found at i:57052099 original size:34 final size:34
Alignment explanation
Indices: 57052051--57052147 Score: 160
Period size: 34 Copynumber: 2.9 Consensus size: 34
57052041 TGCATTTTGT
* *
57052051 ACTGATATTATTACTGAATTGGGCTAAGGCCCAC
1 ACTGATACTGTTACTGAATTGGGCTAAGGCCCAC
*
57052085 ACTGATACTGTTACTGAATTGGGCTAAGGCCTAC
1 ACTGATACTGTTACTGAATTGGGCTAAGGCCCAC
57052119 ACTGATACTGTTACTGAA-TGGGCTAAGGC
1 ACTGATACTGTTACTGAATTGGGCTAAGGC
57052148 GCTAACTGAG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
33 11 0.18
34 49 0.82
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (34 bp):
ACTGATACTGTTACTGAATTGGGCTAAGGCCCAC
Found at i:57059649 original size:26 final size:27
Alignment explanation
Indices: 57059562--57059638 Score: 122
Period size: 26 Copynumber: 2.9 Consensus size: 27
57059552 CAAATTGATG
*
57059562 AAATGACTGTTATGCCCCTATGAGGTA
1 AAATGACTGATATGCCCCTATGAGGTA
57059589 AAATGACT-ACTATG-CCCTATGAGGTA
1 AAATGACTGA-TATGCCCCTATGAGGTA
57059615 AAATGACTGATATGCCCCTATGAG
1 AAATGACTGATATGCCCCTATGAG
57059639 ATGTATGACT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
AAATGACTGATATGCCCCTATGAGGTA
Found at i:57064464 original size:47 final size:47
Alignment explanation
Indices: 57064323--57064690 Score: 594
Period size: 47 Copynumber: 7.7 Consensus size: 47
57064313 TTAGGATTCT
* *
57064323 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
*
57064372 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
57064421 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57064468 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
57064515 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57064562 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
57064609 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC-AAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA-TGGCCG
* * *
57064656 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57064691 TCCCGAAGGG
Statistics
Matches: 302, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
46 2 0.01
47 238 0.79
48 1 0.00
49 61 0.20
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:57064865 original size:37 final size:37
Alignment explanation
Indices: 57064809--57064887 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
57064799 CCGAGCTCTA
* *
57064809 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
57064846 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
57064883 AAGAC
1 AAGAC
57064888 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:57070765 original size:24 final size:24
Alignment explanation
Indices: 57070729--57070802 Score: 103
Period size: 24 Copynumber: 3.1 Consensus size: 24
57070719 GGGTCAACAT
*
57070729 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
57070753 TGGCACTATGTGTGCGAAATTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
57070777 TGGCATTATGTGTGCTGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
57070801 TG
1 TG
57070803 TCAATACATG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.24, C:0.11, G:0.31, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:57078226 original size:15 final size:15
Alignment explanation
Indices: 57078206--57078235 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57078196 TATATATAAC
57078206 TATATATATATGTGT
1 TATATATATATGTGT
*
57078221 TATATATGTATGTGT
1 TATATATATATGTGT
57078236 AATTGAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (15 bp):
TATATATATATGTGT
Found at i:57078711 original size:24 final size:24
Alignment explanation
Indices: 57078677--57078835 Score: 92
Period size: 24 Copynumber: 6.6 Consensus size: 24
57078667 GTCAACATTA
*
57078677 GCACTAAGTGTGCGAATTTGAATG
1 GCACTATGTGTGCGAATTTGAATG
*
57078701 GCACTATGTGTTG-GAAATTGAATG
1 GCACTATGTG-TGCGAATTTGAATG
*
57078725 GCACTATGTATGCTG-ATTTGAATG
1 GCACTATGTGTGC-GAATTTGAATG
* * ** * * *
57078749 TCAATACATGAGTGAATCTTCAA-G
1 GCACTATGTGTGCGAAT-TTGAATG
* * **
57078773 GCACTATGTGTGCG-GTGTAGCGTG
1 GCACTATGTGTGCGAAT-TTGAATG
* ** *
57078797 GCACTATGTGTGCGAACTTGTTTA
1 GCACTATGTGTGCGAATTTGAATG
57078821 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
57078836 GATCTGTTGA
Statistics
Matches: 98, Mismatches: 30, Indels: 14
0.69 0.21 0.10
Matches are distributed among these distances:
23 5 0.05
24 86 0.88
25 7 0.07
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGAATTTGAATG
Found at i:57085430 original size:57 final size:57
Alignment explanation
Indices: 57085359--57085499 Score: 171
Period size: 57 Copynumber: 2.5 Consensus size: 57
57085349 ATATAGACAG
57085359 CAGGATTACCAGTCCAGGCTAAATCCTA-TCTACAATATATACTC-AATAGAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCC-AGTCTACAATATATACTCTAA-AGAGCTTAGT
* * *
57085416 CAGGATTACTAGTCCAGGCTAAATCCAGTCTACAATATATGCTCTAAAGAGC-TGGAT
1 CAGGATTACCAGTCCAGGCTAAATCCAGTCTACAATATATACTCTAAAGAGCTTAG-T
* * **
57085473 CTGGATTACCCGTCCTCGCTAAATCCA
1 CAGGATTACCAGTCCAGGCTAAATCCA
57085500 ATCCATAACA
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
56 3 0.04
57 68 0.93
58 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCAGTCTACAATATATACTCTAAAGAGCTTAGT
Found at i:57095469 original size:17 final size:17
Alignment explanation
Indices: 57095449--57095508 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
57095439 GCAAACATAC
*
57095449 TTTTTTTTCTAATCTTT
1 TTTTTTTTCTCATCTTT
* * *
57095466 TTTTCTTGCTCTTC-TT
1 TTTTTTTTCTCATCTTT
*
57095482 TTTCTTTTCTCA-CTTGT
1 TTTTTTTTCTCATCTT-T
57095499 TTTTTTTTCT
1 TTTTTTTTCT
57095509 TTTGCTATTT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
15 1 0.03
16 11 0.34
17 20 0.62
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTTTTCTCATCTTT
Found at i:57095520 original size:19 final size:19
Alignment explanation
Indices: 57095498--57095550 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
57095488 TTCTCACTTG
57095498 TTTTTTTTTCTTTTGCTAT
1 TTTTTTTTTCTTTTGCTAT
*** * *
57095517 TTTTGCATTCTTTTTCTTT
1 TTTTTTTTTCTTTTGCTAT
57095536 TTTTTCTTTTCTTTT
1 TTTTT-TTTTCTTTT
57095551 TTCACATTCA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.04, C:0.13, G:0.04, T:0.79
Consensus pattern (19 bp):
TTTTTTTTTCTTTTGCTAT
Found at i:57095559 original size:33 final size:36
Alignment explanation
Indices: 57095499--57095573 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 36
57095489 TCTCACTTGT
*
57095499 TTTTTTTTCTTTTGCTATTTTTGCATTC-T-TTTTC
1 TTTTTTTTCTTTTGCTATTTTTACATTCATCTTTTC
57095533 TTTTTTTTCTTTT-CT-TTTTTCACATTCATTCTTTTC
1 TTTTTTTTCTTTTGCTATTTTT-ACATTCA-TCTTTTC
57095569 TTTTT
1 TTTTT
57095574 CTCTCAATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 5 0.14
33 7 0.19
34 13 0.36
35 1 0.03
36 10 0.28
ACGTcount: A:0.07, C:0.16, G:0.03, T:0.75
Consensus pattern (36 bp):
TTTTTTTTCTTTTGCTATTTTTACATTCATCTTTTC
Found at i:57095574 original size:33 final size:32
Alignment explanation
Indices: 57095498--57095575 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 32
57095488 TTCTCACTTG
* *
57095498 TTTTTTTTTCTTTTGCTATTTTTGCATTCTTTT
1 TTTTTTTTTCTTTTGCTATTTTTACATTC-TTC
57095531 TCTTTTTTTTCTTTT-CT-TTTTTCACATTCATTC
1 T-TTTTTTTTCTTTTGCTATTTTT-ACATTC-TTC
57095564 TTTTCTTTTTCT
1 TTTT-TTTTTCT
57095576 CTCAATTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
32 8 0.21
33 18 0.46
34 13 0.33
ACGTcount: A:0.06, C:0.17, G:0.03, T:0.74
Consensus pattern (32 bp):
TTTTTTTTTCTTTTGCTATTTTTACATTCTTC
Found at i:57100742 original size:30 final size:31
Alignment explanation
Indices: 57100666--57100754 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 31
57100656 TCCAACTCAC
* *
57100666 GAGCTAAACCTTAGCTCAACTTCAGCT-TAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTCAAG
* * *
57100696 GAGTTTAACCTCAGCTCAACTTTAGCTCAAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTCAAG
* *
57100727 G-GCTAAAGCTTAGCTC-ATTTTAGCTCAA
1 GAGCTAAACCTTAGCTCAACTTTAGCTCAA
57100755 ACCCGATTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 11 0.23
30 34 0.71
31 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTCAAG
Found at i:57107683 original size:8 final size:8
Alignment explanation
Indices: 57107645--57107691 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
57107635 TATTTTAGGT
*
57107645 TAATTTAA
1 TAATTTTA
*
57107653 TAATTTAA
1 TAATTTTA
57107661 TAATTTTA
1 TAATTTTA
57107669 -AATTTTTA
1 TAA-TTTTA
*
57107677 TTATTTTA
1 TAATTTTA
57107685 TAATTTT
1 TAATTTT
57107692 TTTAACACTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 2 0.06
8 31 0.91
9 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TAATTTTA
Found at i:57108861 original size:15 final size:15
Alignment explanation
Indices: 57108833--57108865 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
57108823 TTATTTCCTC
57108833 TCTCGTCTGTTTTTG
1 TCTCGTCTGTTTTTG
57108848 TCTC-TCTGTCTTTTG
1 TCTCGTCTGT-TTTTG
57108863 TCT
1 TCT
57108866 TTCTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.00, C:0.24, G:0.15, T:0.61
Consensus pattern (15 bp):
TCTCGTCTGTTTTTG
Found at i:57123945 original size:20 final size:20
Alignment explanation
Indices: 57123920--57123962 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
57123910 GATATCGCAC
57123920 ACTTAGTGCCATCATATTAA
1 ACTTAGTGCCATCATATTAA
57123940 ACTTAGTGCCATCATATTAA
1 ACTTAGTGCCATCATATTAA
57123960 ACT
1 ACT
57123963 GAAGCTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (20 bp):
ACTTAGTGCCATCATATTAA
Found at i:57124040 original size:40 final size:40
Alignment explanation
Indices: 57123996--57124072 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
57123986 TTAGTGCCAC
**
57123996 ATATAGCCGAAGCTAT-TCCAATTCGCACACTAAGTGCTAT
1 ATATAGCCGAAGCTATCT-CAAAACGCACACTAAGTGCTAT
57124036 ATATAGCCGAAGCTATCTCAAAACGCACACTAAGTGC
1 ATATAGCCGAAGCTATCTCAAAACGCACACTAAGTGC
57124073 CAACATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (40 bp):
ATATAGCCGAAGCTATCTCAAAACGCACACTAAGTGCTAT
Found at i:57133343 original size:22 final size:22
Alignment explanation
Indices: 57133318--57133359 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
57133308 AAAGAAGAAG
57133318 TTAGTCTTGGTTAAATGACTTA
1 TTAGTCTTGGTTAAATGACTTA
57133340 TTAGTCTTGGTTAAATGACT
1 TTAGTCTTGGTTAAATGACT
57133360 CAATTAGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (22 bp):
TTAGTCTTGGTTAAATGACTTA
Found at i:57138289 original size:54 final size:53
Alignment explanation
Indices: 57138167--57138359 Score: 154
Period size: 54 Copynumber: 3.6 Consensus size: 53
57138157 ATACCATTTT
* *
57138167 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
* ** * ** * *
57138220 CATGCCTTGGGATGGTCTTACATGG-ATCTTTGCCTTATCGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATGC
* * * * * *
57138274 CATGTCTTGACATGGTATTACATGATTTCCTTGCCTTGTAAAACTTACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGC
* * * * * *
57138328 CTTGCCTTGGCATGCTCATACTTGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
57138360 AAACCCTAAT
Statistics
Matches: 105, Mismatches: 32, Indels: 5
0.74 0.23 0.04
Matches are distributed among these distances:
52 12 0.11
53 22 0.21
54 61 0.58
55 10 0.10
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:57145732 original size:53 final size:53
Alignment explanation
Indices: 57145647--57145751 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
57145637 TTCCCTTTTA
* * ** * *
57145647 AACTTACCATTACCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATG
1 AACTCACCATTACCATGCCTTGACATGGTCTTACATGGGATCATTGCCTTATG
*
57145700 AACTCACCATTGCCATGCCTT-AGCATGGTCTTACATGGGATCATTGCCTTAT
1 AACTCACCATTACCATGCCTTGA-CATGGTCTTACATGGGATCATTGCCTTAT
57145752 CGTAGTTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTCACCATTACCATGCCTTGACATGGTCTTACATGGGATCATTGCCTTATG
Found at i:57156449 original size:20 final size:20
Alignment explanation
Indices: 57156424--57156477 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
57156414 CACGAGCCTA
*
57156424 TCCCAATGCACCCGGGCGTG
1 TCCCAATGCACACGGGCGTG
57156444 TCCCAATGCACACGGGCGTG
1 TCCCAATGCACACGGGCGTG
57156464 TCCCAATGCACACG
1 TCCCAATGCACACG
57156478 AGCATGTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15
Consensus pattern (20 bp):
TCCCAATGCACACGGGCGTG
Found at i:57159954 original size:30 final size:30
Alignment explanation
Indices: 57159918--57159977 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
57159908 TTCCCGAGCC
*
57159918 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
57159948 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
57159978 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:57164498 original size:46 final size:46
Alignment explanation
Indices: 57164445--57164581 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
57164435 TATATATACA
* * *
57164445 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
57164491 CATCTCATACATGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
57164537 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATAT
57164582 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:57164615 original size:47 final size:47
Alignment explanation
Indices: 57164560--57164690 Score: 208
Period size: 47 Copynumber: 2.8 Consensus size: 47
57164550 TTTCGCATTA
* *
57164560 GCCATTCGGCCTTACCACATATATACATGTTCACATTCATCAAATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCAAATTG
* *
57164607 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCAAATTG
* *
57164654 GCCATTCGGCCTTATCACACATACGCATGTTCACATT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATT
57164691 AAAATCCTAA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCAAATTG
Found at i:57168963 original size:40 final size:40
Alignment explanation
Indices: 57168919--57169545 Score: 795
Period size: 40 Copynumber: 15.7 Consensus size: 40
57168909 ATGATTGCCT
* * * *
57168919 TTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
** * * * *
57168959 TTCGGGGTTTATCACGGATATATCACTAGCACAAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
57168999 TTCGGAACTTAGCCCGGATACATCACAAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
** * * *
57169039 TTCGGGGTTTAGCACAGATATATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
57169079 TTCGGAACTTAGCCCGGATACGTCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
** * *
57169119 TTCGGGGTTTAGCACGGATATATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
57169159 TTCAGAACTTAGCCCGGATACATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
** * *
57169199 TTCGGGGTTTAGCACGGATATATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
57169239 TTCGGAACTTAGCCCGGATACGTCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
** * *
57169279 TTCGGGGTTTAGCACGGATATATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
57169319 TTCGGAACTTAGCCCGGATACGTCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* ** ** *
57169359 TTTGGGGTTTAGTACGGATATATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* **
57169399 TTCGGAACTTAGCCCGGATACGCCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
*
57169439 TTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
*
57169479 TTCGGGACTTAGCCCAGATACATCACTAGCACGAATGCTC
1 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* * *
57169519 TTCTGGACTTAGCCCGGGTATATCACT
1 TTCGGGACTTAGCCCGGATACATCACT
57169546 CTCAATTCTC
Statistics
Matches: 494, Mismatches: 93, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 494 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
Found at i:57169031 original size:80 final size:80
Alignment explanation
Indices: 57168919--57169545 Score: 1011
Period size: 80 Copynumber: 7.8 Consensus size: 80
57168909 ATGATTGCCT
* * * * * *
57168919 TTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTATCACGGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
*
57168984 CTAGCACAAATGCTC
66 CTAGCACGAATGCTC
* *
57168999 TTCGGAACTTAGCCCGGATACATCACAAGCACGAATGCTCTTCGGGGTTTAGCACAGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169064 CTAGCACGAATGCTC
66 CTAGCACGAATGCTC
*
57169079 TTCGGAACTTAGCCCGGATACGTCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169144 CTAGCACGAATGCTC
66 CTAGCACGAATGCTC
*
57169159 TTCAGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169224 CTAGCACGAATGCTC
66 CTAGCACGAATGCTC
*
57169239 TTCGGAACTTAGCCCGGATACGTCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169304 CTAGCACGAATGCTC
66 CTAGCACGAATGCTC
* * *
57169319 TTCGGAACTTAGCCCGGATACGTCACTAGCACGAATGCTCTTTGGGGTTTAGTACGGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169384 CTAGCACGAATGCTC
66 CTAGCACGAATGCTC
** ** *
57169399 TTCGGAACTTAGCCCGGATACGCCACTAGCACGAATGCTCTTCGGGACTTAGCACGGATACATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169464 CTAGCACGAATGCTC
66 CTAGCACGAATGCTC
* * * ** * *
57169479 TTCGGGACTTAGCCCAGATACATCACTAGCACGAATGCTCTTCTGGACTTAGCCCGGGTATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
57169544 CT
66 CT
57169546 CTCAATTCTC
Statistics
Matches: 516, Mismatches: 31, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 516 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCA
CTAGCACGAATGCTC
Found at i:57171084 original size:46 final size:46
Alignment explanation
Indices: 57171031--57171167 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
57171021 TATATATACA
* * * *
57171031 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
57171077 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
57171123 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
57171168 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:57171201 original size:47 final size:47
Alignment explanation
Indices: 57171141--57171276 Score: 218
Period size: 47 Copynumber: 2.9 Consensus size: 47
57171131 ACACATTTCG
* * *
57171141 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
57171188 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
57171235 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
57171277 AAATCCTAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:57178179 original size:30 final size:30
Alignment explanation
Indices: 57178133--57178193 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
57178123 TTCCTGAGCC
* *
57178133 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
57178163 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
57178193 T
1 T
57178194 GTATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:57186362 original size:28 final size:29
Alignment explanation
Indices: 57186330--57186443 Score: 153
Period size: 28 Copynumber: 4.0 Consensus size: 29
57186320 TACCTGTATC
* *
57186330 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
57186358 TGGCCCATTAGGCCCAAATCACCTT-ATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
57186386 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
57186415 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
57186443 T
1 T
57186444 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
28 53 0.69
29 24 0.31
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:57186417 original size:57 final size:57
Alignment explanation
Indices: 57186321--57186430 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
57186311 AATTTCACAT
* *
57186321 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
57186378 ACCT-TATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
57186431 GTCACATTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 17 0.36
57 30 0.64
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:57186675 original size:8 final size:8
Alignment explanation
Indices: 57186653--57186696 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
57186643 CATAGCCAAA
57186653 CTTTT-GG
1 CTTTTCGG
*
57186660 CATTTCGG
1 CTTTTCGG
57186668 CTTTTCGG
1 CTTTTCGG
57186676 CTTTTCGG
1 CTTTTCGG
57186684 -TATTTCGG
1 CT-TTTCGG
57186692 CTTTT
1 CTTTT
57186697 GTCGATACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 5 0.16
8 26 0.81
9 1 0.03
ACGTcount: A:0.05, C:0.20, G:0.23, T:0.52
Consensus pattern (8 bp):
CTTTTCGG
Found at i:57187824 original size:16 final size:16
Alignment explanation
Indices: 57187803--57187834 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57187793 AGAAAATATG
57187803 GGATTTCGGGATTTTT
1 GGATTTCGGGATTTTT
*
57187819 GGATTTTGGGATTTTT
1 GGATTTCGGGATTTTT
57187835 AGGGCGTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.03, G:0.31, T:0.53
Consensus pattern (16 bp):
GGATTTCGGGATTTTT
Found at i:57193901 original size:28 final size:29
Alignment explanation
Indices: 57193869--57193978 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
57193859 CTGTATCTGG
* *
57193869 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
* *
57193897 CCATTACGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATATGGC
*
57193926 CCATTAGGCCCAAATCACATTTATATGG-
1 CCATTAGGCCCAAATCACATTCATATGGC
* *
57193954 CCGTTAGGCCC-AGTCACATTCATAT
1 CCATTAGGCCCAAATCACATTCATAT
57193979 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
27 12 0.17
28 21 0.30
29 37 0.52
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTCATATGGC
Found at i:57207324 original size:18 final size:18
Alignment explanation
Indices: 57207301--57207336 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
57207291 AGTTCAGTAT
57207301 ACATACCTCATCAAAGCA
1 ACATACCTCATCAAAGCA
57207319 ACATACCTCATCAAAGCA
1 ACATACCTCATCAAAGCA
57207337 TTCACCAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.33, G:0.06, T:0.17
Consensus pattern (18 bp):
ACATACCTCATCAAAGCA
Found at i:57213949 original size:21 final size:20
Alignment explanation
Indices: 57213921--57213959 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
57213911 CTTAACACAG
*
57213921 GGGCACACGCCCATGTGATA
1 GGGCACACACCCATGTGATA
57213941 GGGCAACACACCCATGTGA
1 GGGC-ACACACCCATGTGA
57213960 CTTATCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.31, G:0.28, T:0.13
Consensus pattern (20 bp):
GGGCACACACCCATGTGATA
Found at i:57218132 original size:56 final size:56
Alignment explanation
Indices: 57218070--57218189 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
57218060 ACAAGGGATG
57218070 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
57218126 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
57218182 ATGGGCAA
1 ATGGGCAA
57218190 TAAATAATAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:57219389 original size:40 final size:40
Alignment explanation
Indices: 57219151--57219375 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
57219141 TCGAATGATG
* * * *
57219151 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
57219191 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57219231 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
57219270 TCCGGGTTATGTCCCGAAGGCATTTCTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57219310 TACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57219351 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57219376 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 117 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57225932 original size:56 final size:56
Alignment explanation
Indices: 57225846--57225965 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
57225836 ACAAGGGATG
57225846 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
57225902 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
57225958 ATGGGCAA
1 ATGGGCAA
57225966 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:57226637 original size:45 final size:45
Alignment explanation
Indices: 57226573--57226662 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
57226563 AATAAGTACA
57226573 TAAGTTATGTTTATATTCGGCCATAAGCTAGCAAAATGAGACTTT
1 TAAGTTATGTTTATATTCGGCCATAAGCTAGCAAAATGAGACTTT
57226618 TAAGTTATGTTTATATTCGGCCATAAGCTAGCAAAATGAGACTTT
1 TAAGTTATGTTTATATTCGGCCATAAGCTAGCAAAATGAGACTTT
57226663 AATGAGTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (45 bp):
TAAGTTATGTTTATATTCGGCCATAAGCTAGCAAAATGAGACTTT
Found at i:57227210 original size:40 final size:40
Alignment explanation
Indices: 57226972--57227196 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
57226962 TCGAATGATG
* * * *
57226972 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
57227012 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57227052 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
57227091 TCCGGGTTAAGTCCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57227131 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57227172 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57227197 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57236312 original size:47 final size:48
Alignment explanation
Indices: 57236243--57236561 Score: 187
Period size: 50 Copynumber: 6.6 Consensus size: 48
57236233 GTATAATGTA
* * * *
57236243 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCATC-CATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAATCGAAGCC
*
57236290 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATCGAAGCC
* * *
57236339 GATACCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-ATC-GAAGCC
* * * * *
57236389 GATGGCAGGTCCCAGTCATGGTCTTACACT-AGCTCTCACATATCTG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-ATC-GAAGCC
* * ** ** * *
57236439 GATGGCAGGTCCCAGACATTATCTTACACTGAC-A-CATCTCGTAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGAAGCC
* * ***
57236485 GATG-CATG-CTCCAGACAT-GTCTTAAACT-AGCTCTCGTCTC-AATGCC
1 GATGCCATGTC-CCAGACATGGTCTTACACTGA-CTATCAAATCGAA-GCC
*
57236531 GATGCCATGTCCGAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
57236562 GCTCTCATAA
Statistics
Matches: 225, Mismatches: 29, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.00
44 10 0.04
45 13 0.06
46 22 0.10
47 43 0.19
48 17 0.08
49 37 0.16
50 80 0.36
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGAAGCC
Found at i:57236366 original size:49 final size:47
Alignment explanation
Indices: 57236247--57236368 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 47
57236237 AATGTAGATG
* * * * *
57236247 CCATGTCCCAGACATGGTCTTACATTGGCTCATCCATCAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGATA
*
57236294 CCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCGAGGCCGATA
1 CCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAGCCGATA
57236343 CCATGTCCCAGACATGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
57236369 AGCTCTCACA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 3 0.05
47 28 0.42
48 3 0.05
49 32 0.48
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGATA
Found at i:57236411 original size:50 final size:50
Alignment explanation
Indices: 57236289--57236468 Score: 222
Period size: 50 Copynumber: 3.6 Consensus size: 50
57236279 TCCATCAAGT
* * * * *
57236289 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCA-AAATC-GAGGC
1 CGATGGCAGGTCCCAGACATGGTCTTACACTAG-CTCTCACATATCTG-TGC
** *
57236338 CGATACCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGC
1 CGATGGCAGGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGC
*
57236388 CGATGGCAGGTCCCAGTCATGGTCTTACACTAGCTCTCACATATCTGTGC
1 CGATGGCAGGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGC
**
57236438 CGATGGCAGGTCCCAGACATTATCTTACACT
1 CGATGGCAGGTCCCAGACATGGTCTTACACT
57236469 GACACATCTC
Statistics
Matches: 117, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
49 35 0.30
50 81 0.69
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
CGATGGCAGGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGC
Found at i:57244166 original size:43 final size:43
Alignment explanation
Indices: 57243997--57244249 Score: 255
Period size: 43 Copynumber: 5.9 Consensus size: 43
57243987 TACGGTACTA
* *
57243997 ATCGGGTCTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGAT
1 ATCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* ** *
57244041 ATCGAGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCG-GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* *
57244085 ATTTGGGTCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
1 A-TCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
57244130 ATCGGGCATCGACCCTAACAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
57244173 ATCGGGCTTCGAGCCTAGCAGGCGA-AATGCCGATG-GATGA-
1 ATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* ** *
57244213 ATTCGGGTTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 A-TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
57244250 TTTGATAAAA
Statistics
Matches: 175, Mismatches: 27, Indels: 16
0.80 0.12 0.07
Matches are distributed among these distances:
40 1 0.01
41 32 0.18
42 9 0.05
43 55 0.31
44 42 0.24
45 35 0.20
46 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (43 bp):
ATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:57246384 original size:84 final size:84
Alignment explanation
Indices: 57246287--57246469 Score: 303
Period size: 84 Copynumber: 2.2 Consensus size: 84
57246277 CATGTACTGG
** *
57246287 TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATTGTGTTCAATTTAGCAAT
1 TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATCATGTTCAATTTAGCAAC
*
57246352 CGGAACAAATGTTTCTTGA
66 CGAAACAAATGTTTCTTGA
* * *
57246371 TAATTCATTTCATATTGATAACTTTATCAACCCTGAATCATCTTAATCATTTTCAATTTAGCAAC
1 TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATCATGTTCAATTTAGCAAC
57246436 CGAAACAAATGTTTCTTGA
66 CGAAACAAATGTTTCTTGA
57246455 TAATTCATTTCATAT
1 TAATTCATTTCATAT
57246470 GTCTAAATGA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 92 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.40
Consensus pattern (84 bp):
TAATTCATTTCATATTGATAAATTAATCAACCCTGAATCATCTTAATCATGTTCAATTTAGCAAC
CGAAACAAATGTTTCTTGA
Found at i:57253188 original size:14 final size:14
Alignment explanation
Indices: 57253169--57253196 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
57253159 GAATCAAAGA
57253169 ACCAGAGTAAGCAT
1 ACCAGAGTAAGCAT
57253183 ACCAGAGTAAGCAT
1 ACCAGAGTAAGCAT
57253197 TAAATGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
ACCAGAGTAAGCAT
Found at i:57253654 original size:79 final size:81
Alignment explanation
Indices: 57253539--57253721 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
57253529 TACTCGTTCA
* *
57253539 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTACCCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTACCCCGG
* *
57253602 ATTTAGTAAC-TCGCATC
65 ATATAGTAACTTAGCA-C
* **
57253619 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTACCCCGGA
* *
57253682 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
57253698 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57253722 CATGATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTACCCCGGA
TATAGTAACTTAGCAC
Found at i:57253721 original size:40 final size:40
Alignment explanation
Indices: 57253518--57253721 Score: 222
Period size: 40 Copynumber: 5.1 Consensus size: 40
57253508 CGAAATTTAA
** *
57253518 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57253558 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTACC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57253598 CCGGATTTAGTAACTCGCATC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCA-CAAATGCCTTCGGGACTTAGC
* *
57253637 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57253677 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57253717 CCGGA
1 CCGGA
57253722 CATGATTCGA
Statistics
Matches: 139, Mismatches: 16, Indels: 18
0.80 0.09 0.10
Matches are distributed among these distances:
38 3 0.02
39 31 0.22
40 92 0.66
41 13 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57261851 original size:79 final size:81
Alignment explanation
Indices: 57261709--57261891 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 81
57261699 TACTCGTTCA
* * * * *
57261709 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATCCCTTCGGAAATTAACCCGGA
* *
57261773 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
* **
57261789 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATCCCTTC-GAATATTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATCCCTTCGGAA-ATTAACCCGG
* *
57261851 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
57261868 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57261892 CATCATTCGA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 56 0.65
80 28 0.33
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATCCCTTCGGAAATTAACCCGGA
TATAGTAACTTAGCAC
Found at i:57261891 original size:40 final size:40
Alignment explanation
Indices: 57261688--57261891 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
57261678 CAGAATTTAA
** *
57261688 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57261728 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57261768 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * *
57261807 CCGGA-ATTAGTATCTCGCACAAATCCCTTC-GAATATTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57261847 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57261887 CCGGA
1 CCGGA
57261892 CATCATTCGA
Statistics
Matches: 133, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.23
40 90 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57265059 original size:17 final size:17
Alignment explanation
Indices: 57265029--57265064 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
57265019 TTATTTTTCT
* *
57265029 TTTTCTTTTGAATTTTA
1 TTTTCATTTCAATTTTA
57265046 TTTTCATTTCAATTTTA
1 TTTTCATTTCAATTTTA
57265063 TT
1 TT
57265065 ATTTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.69
Consensus pattern (17 bp):
TTTTCATTTCAATTTTA
Found at i:57268784 original size:4 final size:4
Alignment explanation
Indices: 57268775--57268814 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
57268765 ACTAGGATTT
*
57268775 TAAA TAAA TAAAA AAAA TAAA TAAA TAAA TAAA -AAA TAAA
1 TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
57268815 AGTTCCAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.09
4 26 0.81
5 3 0.09
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:57268920 original size:26 final size:26
Alignment explanation
Indices: 57268891--57268943 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
57268881 ATTTCTTAAC
57268891 TTAGAATTACTAAACTCATGTTTATG
1 TTAGAATTACTAAACTCATGTTTATG
57268917 TTAGAATTACTAAACTCATGTTTATG
1 TTAGAATTACTAAACTCATGTTTATG
57268943 T
1 T
57268944 CGTTACGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (26 bp):
TTAGAATTACTAAACTCATGTTTATG
Found at i:57273725 original size:19 final size:19
Alignment explanation
Indices: 57273701--57273739 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
57273691 AAGAAAGAAC
57273701 ACACACAGAATAGGGAGTA
1 ACACACAGAATAGGGAGTA
57273720 ACACACAGAATAGGGAGTA
1 ACACACAGAATAGGGAGTA
57273739 A
1 A
57273740 GGAATTACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.26, T:0.10
Consensus pattern (19 bp):
ACACACAGAATAGGGAGTA
Found at i:57288777 original size:30 final size:30
Alignment explanation
Indices: 57288731--57288791 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57288721 TTCCCGAGCC
57288731 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
57288761 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
57288791 T
1 T
57288792 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:57289095 original size:18 final size:19
Alignment explanation
Indices: 57289064--57289099 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
57289054 AAATTTAGTG
*
57289064 AATTAATTGAATTATGTTA
1 AATTAAATGAATTATGTTA
57289083 AATTAAATG-ATTATGTT
1 AATTAAATGAATTATGTT
57289100 GCGAAGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (19 bp):
AATTAAATGAATTATGTTA
Found at i:57289542 original size:68 final size:64
Alignment explanation
Indices: 57289432--57289684 Score: 167
Period size: 68 Copynumber: 3.9 Consensus size: 64
57289422 ATACAGATAG
* * * *
57289432 TATGTAGCTAGGTCACATGAATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCGCATGAATGATACTGAGTGCACACCATGTAG-ACAAGAGAGCTAC--GACA
57289496 TTA
63 -TA
* * **
57289499 TGATGTAGCTAGGTCGCATGAGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGAATGATACTGA-GTGCACACCATGTAGACAAGAGAGCTACGACAT
57289563 A
64 A
** * *
57289564 TATGTAGCTAGGTCGCATGCGTGGTTTAAGGTGAAG-G-ACACCATGTAGACAAGAGAGCTACGA
1 TATGTAGCTAGGTCGCATGAAT-G-AT-A-CTG-AGTGCACACCATGTAGACAAGAGAGCTACGA
*
57289627 GATA
61 CATA
* * * ** * **
57289631 AAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGAATGATACTGAGTGCACACCATGTAG-ACAAGAGAGC
57289685 CGAACTATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 21 0.14
65 5 0.03
66 18 0.12
67 34 0.22
68 49 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGAATGATACTGAGTGCACACCATGTAGACAAGAGAGCTACGACATA
Found at i:57291061 original size:32 final size:32
Alignment explanation
Indices: 57291025--57291088 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
57291015 ATGACATACA
57291025 AATGCTATGTTTGTGGTTTAATTGAGAATATT
1 AATGCTATGTTTGTGGTTTAATTGAGAATATT
57291057 AATGCTATGTTTGTGGTTTAATTGAGAATATT
1 AATGCTATGTTTGTGGTTTAATTGAGAATATT
57291089 TAATCATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.22, T:0.47
Consensus pattern (32 bp):
AATGCTATGTTTGTGGTTTAATTGAGAATATT
Found at i:57310018 original size:79 final size:82
Alignment explanation
Indices: 57309874--57310092 Score: 240
Period size: 79 Copynumber: 2.7 Consensus size: 82
57309864 GAATCACATA
* * * *
57309874 CCTTCGGAAT-TTAA-CCGGATATAGCT-AC-TCGCTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT
57309934 ATAGTAACTCGCACAAATG
64 ATAGTAACTCGCACAAATG
* * * *
57309953 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGTACCAATGCCTTCGGG-CTTAGCCCGGAAT-
1 CCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGAATA
57310014 TAGTAACTCGCACAAATG
65 TAGTAACTCGCACAAATG
** * *
57310032 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGA
57310093 TATCATTCGA
Statistics
Matches: 118, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
78 3 0.03
79 59 0.50
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (82 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGAATAT
AGTAACTCGCACAAATG
Found at i:57310021 original size:39 final size:41
Alignment explanation
Indices: 57309888--57310092 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 41
57309878 CGGAATTTAA
* *
57309888 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57309928 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
57309968 CCGG-ATTTAGTAACTCGTACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57310007 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57310047 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57310088 CCGGA
1 CCGGA
57310093 TATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 80 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57318036 original size:40 final size:40
Alignment explanation
Indices: 57317965--57318147 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
57317955 GCTACTCGTT
*
57317965 CAAATGCCTT-GGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
57318004 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
57318044 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
57318082 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
57318123 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57318148 CATATTCGAA
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
37 2 0.02
38 16 0.13
39 38 0.31
40 54 0.44
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57318131 original size:78 final size:80
Alignment explanation
Indices: 57317965--57318147 Score: 198
Period size: 78 Copynumber: 2.3 Consensus size: 80
57317955 GCTACTCGTT
* *
57317965 CAAATGCCTT-GGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
57318028 GATTTAGTAACTCGAAC
64 GATATAGTAACTAGAAC
* **
57318045 CAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
57318107 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGAAC
57318123 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
57318148 CATATTCGAA
Statistics
Matches: 87, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
77 3 0.03
78 45 0.52
79 32 0.37
80 7 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGAAC
Found at i:57322959 original size:43 final size:43
Alignment explanation
Indices: 57322895--57323383 Score: 609
Period size: 43 Copynumber: 11.3 Consensus size: 43
57322885 CATAGGATTT
*
57322895 TCGATATGTGATTACGTGTAAGACCACGTCTGGGTCATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
57322938 TCAATATGTGATTATGTGTAAGACCACGTCTGGTACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
57322981 TCGATTTGTGATTACATGTAAGAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGT---AAGACCACGTCTGGGACATTGGCA
* *
57323027 TCGATATGTGATTACGTATAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * ** *
57323070 TCGATATGCGATTATGTGTAAGACCATGTCTGATACATTTGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
57323113 TCGATATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * *
57323156 TCGATATGCGATTATGTGTAAGACCACGTCTGAGACATTTGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * *
57323199 TCAATATGTGATTACGTGTAAAACCACATCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * ** *
57323242 TCGATATGTGATTCCGTGTAAGACCACATCTGGGATGTTTGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * *
57323285 TCAATATGTGATTACGTGTAAGACCACATCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * ***
57323328 TCGATATGTGATTACGAGTAAGACCACGTTTAATACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
*
57323371 ACGATATGTGATT
1 TCGATATGTGATT
57323384 CCGATATATG
Statistics
Matches: 384, Mismatches: 59, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
43 346 0.90
46 38 0.10
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:57323415 original size:56 final size:56
Alignment explanation
Indices: 57323329--57323576 Score: 309
Period size: 56 Copynumber: 4.4 Consensus size: 56
57323319 ACGTTGGCAT
* * *
57323329 CGATATGTGAT-TACGAGTAAGACCACGTTTAATACATTGGCAACGATATGTGATTC
1 CGATATGTG-TGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * * *
57323385 CGATATATGTGTGCGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGATTT
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * *
57323441 CGATATGTGTGTGCGAGTAAGAACACGTTTAATACGTTTGCATCGGTATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* * * * * * *
57323497 TGATATGTGTATGAGAGTAAGACCACGTTTAATACGTTGTCATTGATAGGTGATTT
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
57323553 CGATATGTGTTTACGAGTAAGACC
1 CGATATGTGTGTGCGAGTAAGACC
57323577 CTGTCTGGGA
Statistics
Matches: 163, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
55 1 0.01
56 162 0.99
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (56 bp):
CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:57323921 original size:16 final size:17
Alignment explanation
Indices: 57323889--57323921 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
57323879 AAGTGTGAAA
57323889 AATGTGTATACATATATG
1 AATGTGTATA-ATATATG
57323907 AATGTGTAT-ATATAT
1 AATGTGTATAATATAT
57323922 TCATCTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATGTGTATAATATATG
Found at i:57327640 original size:48 final size:48
Alignment explanation
Indices: 57327575--57328064 Score: 725
Period size: 48 Copynumber: 10.1 Consensus size: 48
57327565 GCTGAAATTG
*
57327575 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57327623 ATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57327671 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57327719 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
**
57327767 ATGTATGAGATATGTATATGTGGTAAAGCC-AATGGCTAATGCAAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG--TGA-A-AT
* * * *
57327818 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTGATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* *
57327868 ATATATGAGATCTG-ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
57327915 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGTC-AATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
57327964 ATATATGAGATATGAATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57328012 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
57328060 ATGTA
1 ATGTA
57328065 GGCGATGTGT
Statistics
Matches: 404, Mismatches: 28, Indels: 20
0.89 0.06 0.04
Matches are distributed among these distances:
47 30 0.07
48 246 0.61
49 65 0.16
50 23 0.06
51 31 0.08
52 9 0.02
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:57328265 original size:37 final size:37
Alignment explanation
Indices: 57328215--57328317 Score: 172
Period size: 37 Copynumber: 2.8 Consensus size: 37
57328205 ATATATTCCA
57328215 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
57328252 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
57328289 GGTAAGACCCGATAACTTCGT-TGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
57328318 TCATCTCAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 8 0.13
37 55 0.87
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:57329626 original size:40 final size:40
Alignment explanation
Indices: 57329571--57329932 Score: 490
Period size: 40 Copynumber: 9.1 Consensus size: 40
57329561 CGAGAGTTAT
*
57329571 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
57329611 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
57329651 ATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
57329691 TTATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * * * * *
57329731 TTATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * * *
57329771 TTATATCAGGGCGAAGTCCCGAAGAGCATTCGTGCCGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
57329811 TTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
57329851 ATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * * *
57329891 TTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
57329931 AT
1 AT
57329933 GTTTATTCGG
Statistics
Matches: 286, Mismatches: 36, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:57329788 original size:120 final size:120
Alignment explanation
Indices: 57329572--57329918 Score: 541
Period size: 120 Copynumber: 2.9 Consensus size: 120
57329562 GAGAGTTATA
57329572 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAAGAG
* * * * *
57329637 CATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
66 CATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGTGT
* * * *
57329692 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCTCAAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAAGAG
* * *
57329757 CATTTGTGCTAGAGTTATATCAGGGCGAAGTCCCGAAGAGCATTCGTGCCGGTGT
66 CATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGTGT
* * *
57329812 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAAGAG
* *
57329877 CATTTGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
66 CATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
57329919 ATCATGCTGG
Statistics
Matches: 203, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 203 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAAGAG
CATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGTGT
Found at i:57330144 original size:25 final size:25
Alignment explanation
Indices: 57330094--57330144 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
57330084 TGTGTAACAA
* *
57330094 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
57330119 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
57330144 C
1 C
57330145 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:57333345 original size:31 final size:31
Alignment explanation
Indices: 57333302--57333365 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
57333292 CCTTTTTATA
57333302 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
57333333 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
57333364 TT
1 TT
57333366 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:57333609 original size:23 final size:24
Alignment explanation
Indices: 57333572--57333675 Score: 160
Period size: 24 Copynumber: 4.4 Consensus size: 24
57333562 CTGGAGGCCT
57333572 AGCCTCTTTTAATAACTGGGGC-AA
1 AGCC-CTTTTAATAACTGGGGCAAA
*
57333596 AGCCCTTTTGATAACTGGGGC--A
1 AGCCCTTTTAATAACTGGGGCAAA
*
57333618 AGCCCTTTTGATAACTGGGGCAAA
1 AGCCCTTTTAATAACTGGGGCAAA
57333642 AGCCCTTTTAATAACTGGGGCAAA
1 AGCCCTTTTAATAACTGGGGCAAA
57333666 AGCCCTTTTA
1 AGCCCTTTTA
57333676 CACTTCCTCC
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
22 22 0.29
23 16 0.21
24 38 0.50
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCAAA
Found at i:57333659 original size:46 final size:46
Alignment explanation
Indices: 57333572--57333675 Score: 156
Period size: 46 Copynumber: 2.2 Consensus size: 46
57333562 CTGGAGGCCT
*
57333572 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTGATAACTGGGGC-A
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCAA
*
57333618 AGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCAAA
1 AGCCCTTTTAATAACTGGGGC-AAAGCCCTTTTAATAACTGGGGC-AA
57333666 AGCCCTTTTA
1 AGCCCTTTTA
57333676 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
45 16 0.31
46 26 0.50
48 10 0.19
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (46 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCAA
Found at i:57333746 original size:9 final size:9
Alignment explanation
Indices: 57333732--57333788 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
57333722 ATCTCATGTG
57333732 CATATCATA
1 CATATCATA
*
57333741 CATATCATGTG
1 CATATCA--TA
57333752 CATATCATA
1 CATATCATA
* *
57333761 CATGTCATGTG
1 CATATCA--TA
57333772 CATATCATA
1 CATATCATA
57333781 CATATCAT
1 CATATCAT
57333789 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:57333748 original size:20 final size:20
Alignment explanation
Indices: 57333720--57333790 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
57333710 GCATTTATGA
*
57333720 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
57333740 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
57333760 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
57333780 ACATATCATGT
1 ACATATCATGT
57333791 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:57333755 original size:11 final size:11
Alignment explanation
Indices: 57333725--57333779 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
57333715 TATGAACATC
57333725 TCATGTGCATA
1 TCATGTGCATA
*
57333736 TCA--TACATA
1 TCATGTGCATA
57333745 TCATGTGCATA
1 TCATGTGCATA
* *
57333756 TCA--TACATG
1 TCATGTGCATA
57333765 TCATGTGCATA
1 TCATGTGCATA
57333776 TCAT
1 TCAT
57333780 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:57336435 original size:48 final size:48
Alignment explanation
Indices: 57336370--57336851 Score: 719
Period size: 48 Copynumber: 10.1 Consensus size: 48
57336360 GCTGAAATTG
* *
57336370 ATGTATAAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
57336418 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57336466 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
57336514 ATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATATGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
57336562 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * * *
57336612 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTGATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
57336660 A--TAT---ATA--TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57336701 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* * *
57336751 ATATATGAGATATGAATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57336799 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
57336847 ATGTA
1 ATGTA
57336852 GGCGATGTGT
Statistics
Matches: 398, Mismatches: 23, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
41 32 0.08
43 6 0.02
46 6 0.02
47 1 0.00
48 261 0.66
49 8 0.02
50 83 0.21
51 1 0.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:57337106 original size:37 final size:37
Alignment explanation
Indices: 57336998--57337106 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
57336988 GGAAATATAT
*
57336998 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
57337035 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
57337072 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
57337107 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:57338416 original size:40 final size:40
Alignment explanation
Indices: 57338361--57338723 Score: 492
Period size: 40 Copynumber: 9.1 Consensus size: 40
57338351 CGAGAGTTAT
57338361 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
57338401 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
57338441 ATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
57338481 TTATATCCGGGCTAAGTCCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGT-CCCGAAGAGCATTCGTGCTAGTG
* * * * *
57338522 TTATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
57338562 TTATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCAAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
57338602 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
57338642 ATGTATCTGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * * *
57338682 TTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
57338722 AT
1 AT
57338724 GTGCATTCGG
Statistics
Matches: 290, Mismatches: 32, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
40 250 0.86
41 40 0.14
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:57342231 original size:48 final size:48
Alignment explanation
Indices: 57342172--57342663 Score: 720
Period size: 48 Copynumber: 10.1 Consensus size: 48
57342162 GCTGAAATTG
*
57342172 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
57342220 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
57342268 ATGAATGAAATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57342316 ATGTATGAGATATGTATATGTGGTAAAGCC-ATATGGCTAATATGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGA-ATGGCTAATGTGAAAT
*
57342364 ATGTATGAGATATGTATATGTGGTAAAGCC-AATGGCTAATGCGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
* * * *
57342415 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTGATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
57342465 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57342513 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* * * *
57342563 ATATATGAGATATGAATATGTGGTAAAGCTGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
57342611 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
57342659 ATGTA
1 ATGTA
57342664 GGCGATGTGT
Statistics
Matches: 407, Mismatches: 27, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
47 12 0.03
48 259 0.64
49 7 0.02
50 86 0.21
51 33 0.08
52 10 0.02
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:57342547 original size:98 final size:98
Alignment explanation
Indices: 57342179--57342660 Score: 726
Period size: 98 Copynumber: 4.9 Consensus size: 98
57342169 TTGATGTATA
57342179 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
57342244 AAAGCCGAATGGCTAATGTGAAATAT-GA-ATG
66 AAAGCCGAATGGCTAATGTGAAATATATATATG
* *
57342275 AAATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
57342340 AAAGCC-ATATGGCTAATATG-AA-ATATGTATG
66 AAAGCCGA-ATGGCTAATGTGAAATATATATATG
* *
57342371 AGATATGTATATGTGGTAAAGCC-AATGGCTAATGCGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATG
* * *
57342435 TGGTAAAGCTGAATGGTTGATGTGAAATATATATATG
62 TGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
57342472 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
57342537 AAAGCCGAATGG-TCAATGTGAAATATATATATG
66 AAAGCCGAATGGCT-AATGTGAAATATATATATG
* * *
57342570 AGATATGAATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
57342635 AAAGCCGAATGGCTAGTGTGAAATAT
66 AAAGCCGAATGGCTAATGTGAAATAT
57342661 GTAGGCGATG
Statistics
Matches: 349, Mismatches: 24, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
94 2 0.01
95 15 0.04
96 104 0.30
97 2 0.01
98 138 0.40
99 41 0.12
100 4 0.01
101 31 0.09
102 12 0.03
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:57342918 original size:37 final size:37
Alignment explanation
Indices: 57342810--57342918 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
57342800 GGAAATATAT
* *
57342810 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
57342847 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
57342884 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
57342919 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:57346739 original size:42 final size:42
Alignment explanation
Indices: 57346623--57346742 Score: 109
Period size: 42 Copynumber: 2.9 Consensus size: 42
57346613 CCCATAGTAC
* * * **
57346623 CATATCAATGCCATATCCCGGATATGGTCTTACATTAAATAT
1 CATATCGATGCCATATCCCAGATATGGTCTTATACGAAATAT
* * * * *
57346665 CATATCGACGCCATGTCCCTGACATGATCTTATACGAAATCA-
1 CATATCGATGCCATATCCCAGATATGGTCTTATACGAAAT-AT
*
57346707 CGTA-CTGATGCCATATCCCAGATATGGTCTTATACG
1 CATATC-GATGCCATATCCCAGATATGGTCTTATACG
57346743 GAATTTCAGT
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
41 1 0.02
42 59 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGATATGGTCTTATACGAAATAT
Found at i:57352983 original size:25 final size:25
Alignment explanation
Indices: 57352949--57353001 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
57352939 GATGGATTTT
57352949 GTATCTGGGTTGCCAGTATCGGCAA
1 GTATCTGGGTTGCCAGTATCGGCAA
57352974 GTATCTGGGTTGCCAGTATCGGCAA
1 GTATCTGGGTTGCCAGTATCGGCAA
57352999 GTA
1 GTA
57353002 AGAAAGATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (25 bp):
GTATCTGGGTTGCCAGTATCGGCAA
Done.