Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 177 of 373
Found at i:59270539 original size:40 final size:40
Alignment explanation
Indices: 59270478--59270667 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
59270468 ATTTGAATGA
* * *
59270478 TATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
59270518 TAT-CGAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCG-GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
59270558 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
59270598 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
59270638 TACCCGGGTTAAGACCCGAAGGCAATTGTG
1 TATCCGGGCTAAGACCCGAAGGCATTTGTG
59270668 TTGTGGTTAT
Statistics
Matches: 138, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 2 0.01
40 131 0.95
41 5 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:59272818 original size:519 final size:517
Alignment explanation
Indices: 59272070--59273640 Score: 2477
Period size: 519 Copynumber: 3.0 Consensus size: 517
59272060 GGGTGTTACA
* * * *
59272070 AGTAAGCTCCACACGATCTCCCACATGGGCGTGTGACTGCCCATGTGCTACAAGTCAGTATACCC
1 AGTAAGCTCCACACGATCTCCCACATGGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCC
* * *
59272135 CCCTAATTGACACATGGCCAAGGTACACACACACGAACGTGTGCCTTGGCCGTGTTGCATAAGTC
66 CTCTAATTGGCACA--GCCAAGGTACACACACACGAGCGTGTGCCTTGGCCGTGTTGCATAAGTC
* * * *
59272200 AGTATACCCTCTAGTGTTCACACTGCCTGGCACACGGGCGTGTATTCGGTCGTGTGATACAAGTC
129 AGTATACCCTCTAGTTTTCACACAGCCTGGCACACGGGCGTGTCTTCGGCCGTGTGATACAAGTC
* * * * *
59272265 AGTATATATGCCCTGTTTCTACATGGCCTGAGACACAGTCATGTTTGAAGTCGTGTGAGGCACAC
194 AGTATGTATGCCCTGTTTCTACACGGCCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACAT
***
59272330 GGCCTGTTCACACTAGCGTGTTGAACGACAAAAATGTGCAAGTGTACACAATCGCAACAAGTAAT
259 GGCCTGTTCACACTAGCGTGTTGAACGATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAAT
*
59272395 AAAGTGACAAGTAAATGTCACTTAGCCATTTCTGTCTTATGTAGGTACATTGAAGTTGGGGTGGC
324 AAAGTGACAAGTAAATGTCACTTAGCCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGC
* *
59272460 AAATTGGCCTTGCAAATAGCCTACTTTTGTCCACACAAGTAGAGACACGAGTGTGTCTCTTATCC
389 AAATTGGCCTTGCAAATGGCCTACTTTTGTCCACACAAGTAGAGACACGAGTGTGTCTCTTAGCC
* * * * *
59272525 TTGTGTGATACACGGTCATATTACACATCTATGTGTCCCCTGATGATGAAATTGAATTCG-AGTC
454 GTGTGTGACACACGGTCATGTTACACATCCATGTGTCCCCTGGTGATGAAATTGAATT-GAAGTC
*
59272589 AGTAAGCTCCACACGATCTCCCAAATGGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCC
1 AGTAAGCTCCACACGATCTCCCACATGGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCC
* *
59272654 TTCTAATTGGCACACGACCAAGGTACACACACACGAGTGTGTGCCTTGGCCGTGTTGCATAAGTC
66 CTCTAATTGGCACA-G-CCAAGGTACACACACACGAGCGTGTGCCTTGGCCGTGTTGCATAAGTC
* * *
59272719 AGTATACCCTCTAGTTTTCACACAGTCTGGCACACGGGCATGTCTTCGGCCGTTTGATACAAGTC
129 AGTATACCCTCTAGTTTTCACACAGCCTGGCACACGGGCGTGTCTTCGGCCGTGTGATACAAGTC
* * * *
59272784 AGTATGTATGCCTTGTTTCTACACAGCATGAGACACAGTCATGTCTGAAGCCGTGTAAGGCACAT
194 AGTATGTATGCCCTGTTTCTACACGGCCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACAT
* * *
59272849 GGCCTGTTCACACTAACGTTTTGAACGATGGAAATGTGCAAGTGTACACAATCGCAAC-AGGAAT
259 GGCCTGTTCACACTAGCGTGTTGAACGATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAAT
* *
59272913 AAAGTGTCAAGTAAATGTCACTTAGCCATTTTTGTCTTATGTTGGTACATTGAAGTTGGGGTGGC
324 AAAGTGACAAGTAAATGTCACTTAGCCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGC
*
59272978 AAATTGGCCTTGCAAATGGCCTACTTTTGTCCATACAAGTAGAGACAC-AGGTGTGTCTCTTAGC
389 AAATTGGCCTTGCAAATGGCCTACTTTTGTCCACACAAGTAGAGACACGA-GTGTGTCTCTTAGC
* *
59273042 CGTGTGTGACACACGGTCATGTTACACATCCATGTGTCCCCTGGTGATGAACTTGAATTGAATTC
453 CGTGTGTGACACACGGTCATGTTACACATCCATGTGTCCCCTGGTGATGAAATTGAATTGAAGTC
* *
59273107 AGTAAGATCCACACGATCTCCCTCATGGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCC
1 AGTAAGCTCCACACGATCTCCCACATGGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCC
* *
59273172 CTCTAATTGG--CAGCCAAGGTGCACACACACGAGCATGTGCCTTGGCCGTGTTGCATAAGTCAG
66 CTCTAATTGGCACAGCCAAGGTACACACACACGAGCGTGTGCCTTGGCCGTGTTGCATAAGTCAG
* * *
59273235 TATACCCTCTAGTTTTCACATAGCCTGGCACACGGACGTGTCTTCGGCCATGTGATACAAGTCAG
131 TATACCCTCTAGTTTTCACACAGCCTGGCACACGGGCGTGTCTTCGGCCGTGTGATACAAGTCAG
*
59273300 TATGTATGCCCTGTTTCTACACGGCCTGAGACATAGTCATGTCTGAAGCCGTGTGAGGCACATGG
196 TATGTATGCCCTGTTTCTACACGGCCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACATGG
* *
59273365 CCTGTTCACACTAGCGTGTTGAACAATGGAAATGTGCAAGTGTACACAATCGAAACAAGTAATAA
261 CCTGTTCACACTAGCGTGTTGAACGATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAATAA
*
59273430 AGTGACAAGTAAATGTCACTTAGCCATTTTTGTCTTATGTAGGTACATAGAAGTTGGGGTGGCAA
326 AGTGACAAGTAAATGTCACTTAGCCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAA
* * * *
59273495 ATTGGCCTTGCAAATGGCCTACTTGTGTCCACACAAGAAGAGAAACGGGTGTGTCTCTTAGCCGT
391 ATTGGCCTTGCAAATGGCCTACTTTTGTCCACACAAGTAGAGACACGAGTGTGTCTCTTAGCCGT
* * *
59273560 GTGTAACACACGGTCATGTTAAACATCCATGTGTCCCCTGGTGATGAAATTAAATTGAAGTC
456 GTGTGACACACGGTCATGTTACACATCCATGTGTCCCCTGGTGATGAAATTGAATTGAAGTC
*
59273622 AGTAAGCTCCACAAGATCT
1 AGTAAGCTCCACACGATCT
59273641 GTAACACCCC
Statistics
Matches: 963, Mismatches: 84, Indels: 14
0.91 0.08 0.01
Matches are distributed among these distances:
514 218 0.23
515 203 0.21
516 2 0.00
517 2 0.00
518 254 0.26
519 284 0.29
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (517 bp):
AGTAAGCTCCACACGATCTCCCACATGGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCC
CTCTAATTGGCACAGCCAAGGTACACACACACGAGCGTGTGCCTTGGCCGTGTTGCATAAGTCAG
TATACCCTCTAGTTTTCACACAGCCTGGCACACGGGCGTGTCTTCGGCCGTGTGATACAAGTCAG
TATGTATGCCCTGTTTCTACACGGCCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACATGG
CCTGTTCACACTAGCGTGTTGAACGATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAATAA
AGTGACAAGTAAATGTCACTTAGCCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAA
ATTGGCCTTGCAAATGGCCTACTTTTGTCCACACAAGTAGAGACACGAGTGTGTCTCTTAGCCGT
GTGTGACACACGGTCATGTTACACATCCATGTGTCCCCTGGTGATGAAATTGAATTGAAGTC
Found at i:59274300 original size:6 final size:6
Alignment explanation
Indices: 59274289--59274336 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
59274279 TATCACAACT
* *
59274289 AGAATC AGAATC AGAATC AGTATC AGGTAAT- AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
59274337 GGGAATGCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.09
6 28 0.80
7 2 0.06
8 2 0.06
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:59274503 original size:27 final size:26
Alignment explanation
Indices: 59274455--59274514 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
59274445 GCGTGGCTGC
*
59274455 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
59274482 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
59274508 CAGATAT
1 CAGATAT
59274515 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:59274858 original size:27 final size:27
Alignment explanation
Indices: 59274826--59274914 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
59274816 AACACCCTAG
*
59274826 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGA
* * *
59274853 GCGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAATAGTAATTTTATAAATCGA
*
59274880 GGGTAAAACAGTAA-TTTAGTAAATCGA
1 GGGTAAAATAGTAATTTTA-TAAATCGA
59274907 GGGTAAAA
1 GGGTAAAA
59274915 CAATAATTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTATAAATCGA
Found at i:59274928 original size:27 final size:27
Alignment explanation
Indices: 59274826--59274928 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 27
59274816 AACACCCTAG
** * *
59274826 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * *
59274853 GCGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
59274880 GGGTAAAACAGTAATT-TAGTAAATCGA
1 GGGTAAAACAGTAATTCT-GTAAATCGA
*
59274907 GGGTAAAACAATAATTCTGTAA
1 GGGTAAAACAGTAATTCTGTAA
59274929 CACCCCTATC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.97
28 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:59286359 original size:47 final size:47
Alignment explanation
Indices: 59286299--59286413 Score: 151
Period size: 47 Copynumber: 2.4 Consensus size: 47
59286289 TTAGGATTTT
* ** *
59286299 ATGTGATGGATGTGAATGTGTATCATG-ACGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCAT-ATGTACGCTAAGGCCGAATGGCAA
* **
59286346 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTACGCTAAGGCCGAATGGCAA
59286393 ATGTGATGAATGTGAACATGC
1 ATGTGATGAATGTGAACATGC
59286414 TGCATGTGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 2 0.03
47 58 0.97
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTACGCTAAGGCCGAATGGCAA
Found at i:59286460 original size:62 final size:62
Alignment explanation
Indices: 59286355--59286475 Score: 174
Period size: 62 Copynumber: 2.0 Consensus size: 62
59286345 AATGTGATGA
* * *
59286355 ATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCTGC
1 ATGTGAACATGCATATGTGTGATAAGGCCGAATGGCAAATGTGATGAATATGAACATGCTGC
*
59286417 ATGTGAACATGCCATATGTGTGATAAGG-CGAA-GGCCAATTGTGATGAATATGAACATGC
1 ATGTGAACATG-CATATGTGTGATAAGGCCGAATGG-CAAATGTGATGAATATGAACATGC
59286476 ATATATGTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
61 2 0.04
62 37 0.70
63 14 0.26
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.26
Consensus pattern (62 bp):
ATGTGAACATGCATATGTGTGATAAGGCCGAATGGCAAATGTGATGAATATGAACATGCTGC
Found at i:59286510 original size:47 final size:47
Alignment explanation
Indices: 59286417--59286696 Score: 390
Period size: 47 Copynumber: 6.0 Consensus size: 47
59286407 AACATGCTGC
*
59286417 ATGTGAACATGCCATATGTGTGATAAGG-CGAA-GGCCAATTGTGATGA
1 ATGTGAACATG-CATATATGTGATAAGGCCGAATGGCCAA-TGTGATGA
* *
59286464 ATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
59286511 ATGTGAACATGTATATATGTGATAAGGTCGAATGGCCAATGCGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
59286558 ATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
59286605 ATATGAACGTGCATATATGTGATAAGGCCGAATGGCC-ATGTGATAA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
59286651 ATGTGAACATGCATACATGT-ATAAGG-CAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
59286696 A
1 A
59286697 CGTAGATGTG
Statistics
Matches: 209, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
44 8 0.04
45 15 0.07
46 39 0.19
47 141 0.67
48 6 0.03
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:59286557 original size:156 final size:144
Alignment explanation
Indices: 59286330--59286696 Score: 426
Period size: 141 Copynumber: 2.5 Consensus size: 144
59286320 ATCATGACGC
* * * * *
59286330 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAAAT
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG-CGAATGGCCAAT
59286395 GTGATGAATGTGAACATGCTGCATGTGAACATGCCATATGTGTGATAAGG-CGAA-GGCCAATTG
65 GTGATGAA--TG---A------ATGTGAACATG-CATATGTGTGATAAGGCCGAATGGCCAA-TG
*
59286458 TGATGAATATGAACATGCATATATGTGA
117 TGAAGAATATGAACATGCATATATGTGA
* *
59286486 TAAGGCCGAATGGCCAATGCGATGAATGTGAACATGTATATATGTGATAAGGTCGAATGGCCAA-
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG-CGAATGGCCAAT
*
59286550 -TG-CG-ATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAA
65 GTGATGAATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAA
*
59286612 CGTGCATATATGTGA
130 CATGCATATATGTGA
* * *
59286627 TAAGGCCGAATGGCC-ATGTGATAAATGTGAACATGCATACATGT-ATAAGGCAAATGGCCAATG
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCGAATGGCCAATG
59286690 TGATGAA
66 TGATGAA
59286697 CGTAGATGTG
Statistics
Matches: 188, Mismatches: 17, Indels: 26
0.81 0.07 0.11
Matches are distributed among these distances:
138 10 0.05
139 6 0.03
140 43 0.23
141 59 0.31
142 7 0.04
147 1 0.01
150 2 0.01
152 1 0.01
153 1 0.01
154 2 0.01
156 56 0.30
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (144 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCGAATGGCCAATG
TGATGAATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAAC
ATGCATATATGTGA
Found at i:59286777 original size:46 final size:47
Alignment explanation
Indices: 59286710--59286801 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 47
59286700 AGATGTGTAT
* * *
59286710 ATATGTGGGAAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
59286757 ATATGT-GGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
59286802 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 33 0.85
47 6 0.15
ACGTcount: A:0.35, C:0.07, G:0.32, T:0.27
Consensus pattern (47 bp):
ATATGTGGGAAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:59286786 original size:185 final size:187
Alignment explanation
Indices: 59286420--59286786 Score: 412
Period size: 187 Copynumber: 2.0 Consensus size: 187
59286410 ATGCTGCATG
* * *
59286420 TGAACATGCCATATGTGTGATAAGGCGAAGGCCAATTGTGATGAATATGAACATGCATATATGTG
1 TGAACATGCCATATATGTGATAAGGCGAAGGCCAATTGTGATAAATATGAACATGCATACATGTG
* * * *
59286485 ATAAGGCCGAATGGCCAATGCGATGAATGTGAACATGTATATATGTGATAAGGTCGAATGGCCAA
66 ATAAGGCCAAATGGCCAATGCGATGAACGTGAACATGTATATATGTGATAAAGCCGAATGGCCAA
* *
59286550 TGCGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATA
131 TGCGA-GAATGTGAACATGCATATGTGTGATAAAGCCAAATGGCCAATGTGAAGAATA
* *
59286608 TGAACGTG-CATATATGTGATAAGGCCGAATGGCC-A-TGTGATAAATGTGAACATGCATACATG
1 TGAACATGCCATATATGTGATAAGG-CGAA-GGCCAATTGTGATAAATATGAACATGCATACATG
* **
59286670 T-ATAAGG-CAAATGGCCAATGTGATGAACGT-AGATGTGTATATATGTGGGA-AAAGCCGAATG
64 TGATAAGGCCAAATGGCCAATGCGATGAACGTGA-ACATGTATATATGT--GATAAAGCCGAATG
** * * *
59286731 GTTAATGCGA-AATGTGTATGAGATGGATATGTG-G-TAAAGCCAAATGGCTAATGTGA
126 GCCAATGCGAGAATGTG-A--ACATGCATATGTGTGATAAAGCCAAATGGCCAATGTGA
59286787 GATATGTATG
Statistics
Matches: 152, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
184 7 0.05
185 52 0.34
186 24 0.16
187 53 0.35
188 12 0.08
189 4 0.03
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (187 bp):
TGAACATGCCATATATGTGATAAGGCGAAGGCCAATTGTGATAAATATGAACATGCATACATGTG
ATAAGGCCAAATGGCCAATGCGATGAACGTGAACATGTATATATGTGATAAAGCCGAATGGCCAA
TGCGAGAATGTGAACATGCATATGTGTGATAAAGCCAAATGGCCAATGTGAAGAATA
Found at i:59288395 original size:40 final size:39
Alignment explanation
Indices: 59288210--59288676 Score: 561
Period size: 39 Copynumber: 11.9 Consensus size: 39
59288200 TTTAGTATGA
* *
59288210 ATATCCGGGC-AAGTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTGGTGTT
* * * *
59288248 GTATCCGGGCTAA-TCCGAAAAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTGGTGTT
* *
59288286 ATATCCGGGCTAAGTCCGAAGAGCA-TCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTGGTGTT
* * *
59288324 ATATCCGGGTTAAATCCCGAA-AGCATACGTGCTGGTGTT
1 ATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGTT
* * *
59288363 ATATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGAGTT
1 ATATCCGGGCTAAGTC-CGAAGAGCATTCGTGCTGGTGTT
* *
59288403 ATATCC-GGCTAAGTCTTGAAGAGCATTCGTGCTGGAGTT
1 ATATCCGGGCTAAGTC-CGAAGAGCATTCGTGCTGGTGTT
* *
59288442 ATATCAGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTT
1 ATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGTT
*
59288482 ATAT-CGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTT
1 ATATCCGGGCTAAGTC-CGAAGAGCATTCGTGCTGGTGTT
* * *
59288521 ATATCAGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTC
1 ATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGTT
*
59288561 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAG-T
1 ATATCCGGGCTAAGTC-CGAAGAGCATTCGTGCTGGTGTT
* * * *
59288600 ATATCAGGGTTAAGTCCGAAGAGCATTCGTACTAGTGTT
1 ATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTGGTGTT
*
59288639 ATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTG
59288677 ATGTGTATTC
Statistics
Matches: 372, Mismatches: 43, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
38 95 0.26
39 141 0.38
40 134 0.36
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTGGTGTT
Found at i:59288428 original size:79 final size:79
Alignment explanation
Indices: 59288210--59288674 Score: 604
Period size: 79 Copynumber: 5.9 Consensus size: 79
59288200 TTTAGTATGA
* * * *
59288210 ATATCCGGGC-AAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAA-TC-CGAAAAGCA
1 ATATCAGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGCA
* * *
59288272 TTCGTGCTAGTGAT
66 TTCGTGCTGGAGTT
* * * * *
59288286 ATATCCGGGCTAAGTCCGAAGAGCA-TCGTGCTAGTGATATATCCGGGTTAAATCCCGAA-AGCA
1 ATATCAGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGCA
* *
59288349 TACGTGCTGGTGTT
66 TTCGTGCTGGAGTT
* * * *
59288363 ATATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGAGTTATATCC-GGCTAAGTCTTGAAGAGC
1 ATATCAGGGCTAAGTC-CGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGC
59288427 ATTCGTGCTGGAGTT
65 ATTCGTGCTGGAGTT
* *
59288442 ATATCAGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTATAT-CGGGCTAAGTCTCGAAGAGC
1 ATATCAGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGC
59288506 ATTCGTGCTGGAGTT
65 ATTCGTGCTGGAGTT
* * *
59288521 ATATCAGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTCATATCCGGGCTAAGTCTCGAAGAGC
1 ATATCAGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGC
59288586 ATTCGTGCTGGAG-T
65 ATTCGTGCTGGAGTT
* * *
59288600 ATATCAGGGTTAAGTCCGAAGAGCATTCGTACTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
1 ATATCAGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGCA
*
59288665 TTCATGCTGG
66 TTCGTGCTGG
59288675 TGATGTGTAT
Statistics
Matches: 352, Mismatches: 28, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
76 34 0.10
77 47 0.13
78 77 0.22
79 160 0.45
80 34 0.10
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
ATATCAGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGCA
TTCGTGCTGGAGTT
Found at i:59292421 original size:47 final size:47
Alignment explanation
Indices: 59292392--59292881 Score: 713
Period size: 47 Copynumber: 10.6 Consensus size: 47
59292382 ATACATGAGC
* * * *
59292392 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
59292439 TAAGGCCGAATGGCAAATGTGATGAATGTGAACAT-CATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
59292485 TAAGG-CGAATGG-AAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
59292530 TAAGGCCGGATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
59292577 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
59292624 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
59292671 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
59292718 TAAGGCCGAATGG-CAATGTGATGAATGTGAACTTGCATATGTATGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
59292764 TAAGGCCGAATGGCCAATGT-AAGAATATGAACGTGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
59292810 TAAGGCCGAATGGCCAATGTGAT-AATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
59292856 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
59292882 CGTGGATGTG
Statistics
Matches: 410, Mismatches: 27, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
44 21 0.05
45 23 0.06
46 147 0.36
47 219 0.53
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:59292599 original size:22 final size:22
Alignment explanation
Indices: 59292571--59292646 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
59292561 ACATGTATAT
59292571 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
59292593 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
59292615 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
59292640 ATGTGAT
1 ATGTGAT
59292647 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:59292635 original size:185 final size:186
Alignment explanation
Indices: 59292362--59292881 Score: 726
Period size: 185 Copynumber: 2.8 Consensus size: 186
59292352 TTAGGATTTT
** * * * *
59292362 ATGTGATG-ATGTGAATGTGTATACATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * * * *
59292426 TGCATTTGTGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACAT-CATTTGTGTGCTAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
* * * * *
59292490 CGAATGG-AAATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGGATGGCCA
131 CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGG-CA
59292546 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
59292611 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
*
59292676 CCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCA
131 -CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCA
* * * * * * *
59292733 ATGTGATGAATGTGAACTTGCATATGTATGATAAGGCCGAATGGCCAATGT-AAGAATATGAACG
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
59292797 TGCATATATGTGATAAGGCCGAATGGCCAATGTGAT-AATGTGAACATGCATACATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
59292861 CAGAATGGCCAATGTGATGAA
131 C-GAATGGCCAATGTGATGAA
59292882 CGTGGATGTG
Statistics
Matches: 302, Mismatches: 29, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
184 9 0.03
185 139 0.46
186 58 0.19
187 56 0.19
188 40 0.13
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (186 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
CGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCA
Found at i:59292738 original size:21 final size:21
Alignment explanation
Indices: 59292712--59292783 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
59292702 ACATGTATAT
59292712 ATGTGATAAGGCCGAATGGCA
1 ATGTGATAAGGCCGAATGGCA
* * *
59292733 ATGTGATGAATG-TGAACTTGCA
1 ATGTGAT-AAGGCCGAA-TGGCA
59292755 TATGTATGATAAGGCCGAATGGCCA
1 -ATG--TGATAAGGCCGAATGG-CA
59292780 ATGT
1 ATGT
59292784 AAGAATATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 13
0.67 0.11 0.23
Matches are distributed among these distances:
21 10 0.26
22 8 0.21
23 3 0.08
24 8 0.21
25 9 0.24
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (21 bp):
ATGTGATAAGGCCGAATGGCA
Found at i:59292829 original size:22 final size:22
Alignment explanation
Indices: 59292804--59292878 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
59292794 ACGTGCATAT
*
59292804 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
59292826 ATGTGATAATGTG-A-ACAT-GCATA
1 ATGTGATAA-G-GCAGA-ATGGC-CA
59292849 CATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
59292872 ATGTGAT
1 ATGTGAT
59292879 GAACGTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
22 20 0.48
23 9 0.21
24 13 0.31
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:59292915 original size:232 final size:231
Alignment explanation
Indices: 59292362--59292881 Score: 745
Period size: 232 Copynumber: 2.2 Consensus size: 231
59292352 TTAGGATTTT
* ** * * * *
59292362 ATGTGATGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACAT
1 ATGTGATAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* * * * * *
59292427 GCATTTGTGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACATCATTTGTGTGCTAAGGCG
66 GCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATCATATATGTGATAAGGCG
* * * * *
59292492 AATGGAAATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGGATGGCCAATGTGATGAAT
131 AATGGAAATGTGATGAATGTGAACATGCATATGTATGATAAGGCCGAATGGCCAATGTGAAGAAT
* *
59292557 GTGAACATGTATATATGTGATAAGGCCGAATGGCCA
196 ATGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
59292593 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
1 ATGTGAT-AATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
59292658 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGG
65 TGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACAT-CATATATGTGATAAGG
* *
59292723 CCGAATGGCAATGTGATGAATGTGAACTTGCATATGTATGATAAGGCCGAATGGCCAATGT-AAG
129 -CGAATGGAAATGTGATGAATGTGAACATGCATATGTATGATAAGGCCGAATGGCCAATGTGAAG
*
59292787 AATATGAACGTGCATATATGTGATAAGGCCGAATGGCCA
193 AATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
59292826 ATGTGATAATGTGAACATGCATACATGTGATAAGGCAGAATGGCCAATGTGATGAA
1 ATGTGATAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAA
59292882 CGTGGATGTG
Statistics
Matches: 255, Mismatches: 31, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
231 7 0.03
232 137 0.54
233 57 0.22
234 54 0.21
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (231 bp):
ATGTGATAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
GCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATCATATATGTGATAAGGCG
AATGGAAATGTGATGAATGTGAACATGCATATGTATGATAAGGCCGAATGGCCAATGTGAAGAAT
ATGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:59292948 original size:46 final size:46
Alignment explanation
Indices: 59292895--59292985 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
59292885 GGATGTGTAT
* * *
59292895 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
59292941 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
59292986 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:59295048 original size:15 final size:13
Alignment explanation
Indices: 59295024--59295082 Score: 50
Period size: 15 Copynumber: 4.2 Consensus size: 13
59295014 CCAATTTTTA
59295024 TTTTTA-TTTATT
1 TTTTTATTTTATT
59295036 TTTCTTAATTTTATTT
1 TTT-TT-ATTTTA-TT
59295052 TATTTTATTTTATT
1 T-TTTTATTTTATT
59295066 ATTTATTA-TTTATT
1 -TTT-TTATTTTATT
59295080 TTT
1 TTT
59295083 GGATATTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
12 3 0.08
13 5 0.12
14 11 0.28
15 14 0.35
16 5 0.12
17 2 0.05
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:59295053 original size:5 final size:5
Alignment explanation
Indices: 59295019--59295065 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
59295009 GCAACCCAAT
*
59295019 TTTTA TTTT- TATTTA TTTT- TCTTAA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA T-TTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TT
59295066 ATTTATTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 2 0.06
5 32 0.89
6 2 0.06
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:59295074 original size:25 final size:25
Alignment explanation
Indices: 59295017--59295081 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 25
59295007 AGGCAACCCA
*
59295017 ATTTTTATTTT-TATTTATTTTTCTT
1 ATTTTTATTTTAT-TTTATTTTTATT
*
59295042 AATTTTATTTTATTTTA-TTTTATT
1 ATTTTTATTTTATTTTATTTTTATT
59295066 ATTTATTA-TTTATTTT
1 ATTT-TTATTTTATTTT
59295082 TGGATATTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 17 0.49
25 17 0.49
26 1 0.03
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (25 bp):
ATTTTTATTTTATTTTATTTTTATT
Found at i:59297824 original size:98 final size:98
Alignment explanation
Indices: 59297632--59297827 Score: 277
Period size: 99 Copynumber: 2.0 Consensus size: 98
59297622 TAAATTATTT
* *
59297632 TTAGGAATATGTTGGGCTGAGTAACCGGAGTGGGTGCTTGGCTGTCATCTCTCTTTGCGTCAAAA
1 TTAGGAATATGTTGGGCTGAGTAACCGGAGTGGGTGCTTGGCTGTCATATCTCTTCGCGTCAAAA
* *
59297697 GGCTCAATATGTTCTTAAGAAAAATATAATAAA
66 AGCTCAATATATTCTTAAGAAAAATATAATAAA
* * *
59297730 TTAGGAGTATGTTGGGCTGAGTAACCGGAGTGGGGTGCTTGGCTTTCATATCTCTTCGTGTCAAA
1 TTAGGAATATGTTGGGCTGAGTAACCGGAGT-GGGTGCTTGGCTGTCATATCTCTTCGCGTCAAA
* * * *
59297795 AAGTTCAATGTATTCTTAAGCAATA-ATAATAAA
65 AAGCTCAATATATTCTTAAGAAAAATATAATAAA
59297828 GAAAAAAAGA
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
98 38 0.44
99 48 0.56
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (98 bp):
TTAGGAATATGTTGGGCTGAGTAACCGGAGTGGGTGCTTGGCTGTCATATCTCTTCGCGTCAAAA
AGCTCAATATATTCTTAAGAAAAATATAATAAA
Found at i:59298499 original size:22 final size:22
Alignment explanation
Indices: 59298471--59298513 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
59298461 GATTTAATTT
* *
59298471 TAGCTTTTCTCTTTATTTATCC
1 TAGCTTTTATCTTTAATTATCC
59298493 TAGCTTTTATCTTTAATTATC
1 TAGCTTTTATCTTTAATTATC
59298514 TTTATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.05, T:0.58
Consensus pattern (22 bp):
TAGCTTTTATCTTTAATTATCC
Found at i:59298514 original size:10 final size:10
Alignment explanation
Indices: 59298498--59298536 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
59298488 TATCCTAGCT
59298498 TTTATCTTTA
1 TTTATCTTTA
*
59298508 ATTATCTTTA
1 TTTATCTTTA
59298518 TTTAT-TTATA
1 TTTATCTT-TA
59298528 TTTATCTTT
1 TTTATCTTT
59298537 TAGAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:59310779 original size:13 final size:13
Alignment explanation
Indices: 59310761--59310785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59310751 GAGTAATTAA
59310761 CATACATCCATAG
1 CATACATCCATAG
59310774 CATACATCCATA
1 CATACATCCATA
59310786 CTTAAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.24
Consensus pattern (13 bp):
CATACATCCATAG
Found at i:59310809 original size:12 final size:12
Alignment explanation
Indices: 59310792--59310816 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59310782 CATACTTAAA
59310792 TCATGACATGTT
1 TCATGACATGTT
59310804 TCATGACATGTT
1 TCATGACATGTT
59310816 T
1 T
59310817 TGCCCATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (12 bp):
TCATGACATGTT
Found at i:59317378 original size:40 final size:40
Alignment explanation
Indices: 59317328--59317437 Score: 141
Period size: 40 Copynumber: 2.8 Consensus size: 40
59317318 TAACCACAAG
* * *
59317328 CACAATTGCCTTCGGGTCTTAACTCGGGTATAGCAACT-A
1 CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCA
* * *
59317367 GTACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
1 -CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCA
*
59317408 CACAAATGCCTTCGGGTCTTAGCCCGGATA
1 CACAAATGCCTTCGGGTCTTAACCCGGATA
59317438 AAATCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 61 0.98
41 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCA
Found at i:59317455 original size:40 final size:40
Alignment explanation
Indices: 59317371--59317517 Score: 217
Period size: 40 Copynumber: 3.7 Consensus size: 40
59317361 CAACTAGTAC
* * *
59317371 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCA-CAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACT-AGCAT
*
59317411 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
*
59317451 AAATGCCTTCGGGACTTAGCCCGAATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
59317491 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
59317518 TCATTCAAAT
Statistics
Matches: 100, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:59322298 original size:46 final size:45
Alignment explanation
Indices: 59322245--59322420 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
59322235 TGGTTGAGCA
59322245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
59322291 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
59322336 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
59322384 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59322421 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:59322401 original size:93 final size:93
Alignment explanation
Indices: 59322242--59322412 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
59322232 GGATGGTTGA
* * *
59322242 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59322307 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
59322335 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
59322400 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
59322413 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:59324229 original size:68 final size:69
Alignment explanation
Indices: 59324130--59324275 Score: 249
Period size: 68 Copynumber: 2.1 Consensus size: 69
59324120 ACAAAGTTGA
*
59324130 GACACACGGCCGTATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTACAAAATTTAGGTG
1 GACACACGGCCG-ATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTG
*
59324195 CATGG
65 CAGGG
*
59324200 GACACACGGCCG-TGTCTACCGATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGC
1 GACACACGGCCGATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGC
59324264 AGGG
66 AGGG
59324268 GACACACG
1 GACACACG
59324276 ACAGTACCAC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
68 61 0.84
70 12 0.16
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (69 bp):
GACACACGGCCGATGTCTACCCATGTGTTTGCTACCATACATTCTGACCTAAAAAATTTAGGTGC
AGGG
Found at i:59330750 original size:46 final size:46
Alignment explanation
Indices: 59330700--59330875 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
59330690 TGGTTGAGCA
59330700 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59330746 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
59330791 CATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
59330839 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59330876 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59330856 original size:93 final size:93
Alignment explanation
Indices: 59330697--59330868 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
59330687 GGATGGTTGA
* * *
59330697 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
59330762 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
*
59330790 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59330855 TGAGTCCAAGTTCG
66 TGAGTCCAAGTTCG
59330869 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:59337778 original size:46 final size:46
Alignment explanation
Indices: 59337728--59337903 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
59337718 TGGTTGAGCA
59337728 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59337774 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
59337819 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
59337867 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59337904 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59337884 original size:93 final size:93
Alignment explanation
Indices: 59337725--59337896 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
59337715 GGATGGTTGA
* * *
59337725 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACGCCCGAACTCGTTGAGT
*
59337790 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
*
59337818 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACGCCCGAACTCGTTGAGT
59337883 TGAGTCCAAGTTCG
66 TGAGTCCAAGTTCG
59337897 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:59340269 original size:13 final size:13
Alignment explanation
Indices: 59340251--59340280 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
59340241 CAAGATAATT
59340251 AATTCAATTTCTC
1 AATTCAATTTCTC
*
59340264 AATTCAATTTCTG
1 AATTCAATTTCTC
59340277 AATT
1 AATT
59340281 ACTTTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (13 bp):
AATTCAATTTCTC
Found at i:59348135 original size:22 final size:23
Alignment explanation
Indices: 59348094--59348141 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
59348084 GATTAATCTC
59348094 ATTTTTTATTTTATAATATG-AT
1 ATTTTTTATTTTATAATATGTAT
**
59348116 ATTTTTTATTTTATTTTATGTAT
1 ATTTTTTATTTTATAATATGTAT
59348139 ATT
1 ATT
59348142 ATATGAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (23 bp):
ATTTTTTATTTTATAATATGTAT
Found at i:59348450 original size:16 final size:16
Alignment explanation
Indices: 59348426--59348477 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
59348416 TAGTTCACTA
*
59348426 TAATGGAATAAGGTTG
1 TAATGGAATAAAGTTG
*
59348442 TAATTGAATAAAGTTG
1 TAATGGAATAAAGTTG
* *
59348458 TAATGGAATAGAGCTG
1 TAATGGAATAAAGTTG
59348474 TAAT
1 TAAT
59348478 CAATAATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.33
Consensus pattern (16 bp):
TAATGGAATAAAGTTG
Found at i:59348803 original size:58 final size:56
Alignment explanation
Indices: 59348646--59348812 Score: 156
Period size: 58 Copynumber: 2.8 Consensus size: 56
59348636 TTGTTATTAA
* * ** * * *
59348646 ATTTTAATAAGATTATTATTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATCAT
1 ATTTTAATAAAATTATTATTAAA-ATA---TAATTAAAA-AATCATATATAATTTAATAAC
* *
59348707 ATTTTAACATAATTATTATT-AAATATAATTTAATAAAATCATATATAATTTAATAAC
1 ATTTTAATAAAATTATTATTAAAATATAA-TTAA-AAAATCATATATAATTTAATAAC
59348764 ATTCTTAATAAAATTATTATTAAAATATGAATTAAAAAATCATAATATA
1 ATT-TTAATAAAATTATTATTAAAATAT-AATTAAAAAATCAT-ATATA
59348813 TAATATTATA
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
56 3 0.03
57 22 0.25
58 25 0.28
59 18 0.20
60 4 0.04
61 17 0.19
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (56 bp):
ATTTTAATAAAATTATTATTAAAATATAATTAAAAAATCATATATAATTTAATAAC
Found at i:59358778 original size:49 final size:49
Alignment explanation
Indices: 59358652--59358780 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 49
59358642 ATCAAAATCT
* * *
59358652 ATGCCATGTCCCAGATAGGTCTTACACTAACTTTCATATATCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCG
* * * *
59358701 ATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GCCG
*
59358750 ATGTCATGTCCCAGACAGGTCTTACACTGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGAC
59358781 ACACAACAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 68 0.99
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCG
Found at i:59362991 original size:26 final size:26
Alignment explanation
Indices: 59362961--59363012 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
59362951 CGATTGAGGG
59362961 TTAGGTAGGGGTGGAGAATGTTGGGC
1 TTAGGTAGGGGTGGAGAATGTTGGGC
59362987 TTAGGTAGGGGTGGAGAATGTTGGGC
1 TTAGGTAGGGGTGGAGAATGTTGGGC
59363013 AGCCGGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.04, G:0.50, T:0.27
Consensus pattern (26 bp):
TTAGGTAGGGGTGGAGAATGTTGGGC
Found at i:59364119 original size:43 final size:43
Alignment explanation
Indices: 59364072--59364159 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
59364062 CACTACCAAC
59364072 ACTTAACATAATTACTTTAGCATAATTTACCAAATCAACTCAT
1 ACTTAACATAATTACTTTAGCATAATTTACCAAATCAACTCAT
59364115 ACTTAACATAATTACTTTAGCATAATTTACCAAATCAACTCAT
1 ACTTAACATAATTACTTTAGCATAATTTACCAAATCAACTCAT
59364158 AC
1 AC
59364160 CAAACACAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34
Consensus pattern (43 bp):
ACTTAACATAATTACTTTAGCATAATTTACCAAATCAACTCAT
Found at i:59365549 original size:138 final size:139
Alignment explanation
Indices: 59365299--59365579 Score: 474
Period size: 138 Copynumber: 2.0 Consensus size: 139
59365289 CAAAATGGCT
*
59365299 AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCTTG
1 AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCATG
* *
59365364 ACCTATAGTATCAAATTTAACTCATTCAATCATCACATTATTCAATTTAACCCC-AAAAAACACT
66 ACCTATAGCATCAAATTTAACTCATTCAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
*
59365428 TTATTGCAA
131 TTAGTGCAA
* * * *
59365437 AATAGTTCGATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGTTCAGAACCTCTTCTTTCATG
1 AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCATG
*
59365502 ACCTATAGCATCAAATTTAACTCATTTAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
66 ACCTATAGCATCAAATTTAACTCATTCAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
59365567 TTAGTGCAA
131 TTAGTGCAA
59365576 AATA
1 AATA
59365580 CATTTTGCCT
Statistics
Matches: 133, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
138 111 0.83
139 22 0.17
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.35
Consensus pattern (139 bp):
AATAGTTCAATTTAGTCCACAACCTTGTTCTTTCCCTGATCTAGGTCAAAACCTCTTCTGTCATG
ACCTATAGCATCAAATTTAACTCATTCAATCATCACATTATTAAATTTAACCCCAAAAAAACACT
TTAGTGCAA
Found at i:59368737 original size:19 final size:20
Alignment explanation
Indices: 59368713--59368750 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
59368703 GGTACCACCA
59368713 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
59368732 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
59368751 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:59369031 original size:46 final size:46
Alignment explanation
Indices: 59368979--59369146 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
59368969 CACCCCTAAG
* *
59368979 TGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
* *
59369025 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAA
* * *
59369072 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
*
59369118 TGAACTCAGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
59369147 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 54 0.53
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
Found at i:59369093 original size:93 final size:93
Alignment explanation
Indices: 59368980--59369150 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
59368970 ACCCCTAAGT
* *
59368980 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCAGACTCAACTCAA
59369045 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
59369073 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCAGACTCAACTCAA
59369138 CGAGTTCGGATGC
66 CGAGTTCGGATGC
59369151 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:59369166 original size:46 final size:44
Alignment explanation
Indices: 59369025--59369166 Score: 128
Period size: 46 Copynumber: 3.1 Consensus size: 44
59369015 CATCCATAAA
59369025 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AG
* * * *
59369072 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAG
*
59369118 TGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAG
59369164 TGA
1 TGA
59369167 CATGTCACTT
Statistics
Matches: 78, Mismatches: 10, Indels: 15
0.76 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 3 0.04
46 30 0.38
47 29 0.37
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAG
Found at i:59372503 original size:40 final size:40
Alignment explanation
Indices: 59372445--59372668 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
59372435 TATTCGGATG
*
59372445 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
59372485 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
59372528 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
59372568 ATATCCGGGCTAAGTCCTGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
59372608 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
59372648 ATATCC-AGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
59372669 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 12 0.07
40 111 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:59372590 original size:83 final size:80
Alignment explanation
Indices: 59372449--59372668 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
59372439 CGGATGATAT
* * **
59372449 CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
59372514 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
59372532 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
59372597 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
59372612 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CTATATCC-AGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
59372669 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 14 0.11
80 45 0.37
81 2 0.02
83 62 0.50
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:59379194 original size:19 final size:20
Alignment explanation
Indices: 59379170--59379207 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
59379160 GGTACCACCA
59379170 AAACAT-ATATCAT-ATCTTT
1 AAACATCAT-TCATCATCTTT
59379189 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
59379208 ACCACCCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:59394843 original size:26 final size:26
Alignment explanation
Indices: 59394807--59394859 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
59394797 GTTAAAAGTA
59394807 GAGCACGGTTTTCCAAAATGATATTT
1 GAGCACGGTTTTCCAAAATGATATTT
*
59394833 GAGCGCGGTTTTCCAAAATGATATTT
1 GAGCACGGTTTTCCAAAATGATATTT
59394859 G
1 G
59394860 TTTTCAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
GAGCACGGTTTTCCAAAATGATATTT
Found at i:59413360 original size:15 final size:15
Alignment explanation
Indices: 59413340--59413373 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
59413330 TCCTCTCCAC
59413340 GGTGATGATGGCGGT
1 GGTGATGATGGCGGT
*
59413355 GGTGATGATGGTGGT
1 GGTGATGATGGCGGT
59413370 GGTG
1 GGTG
59413374 GTGGTGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.03, G:0.56, T:0.29
Consensus pattern (15 bp):
GGTGATGATGGCGGT
Found at i:59413423 original size:15 final size:15
Alignment explanation
Indices: 59413405--59413454 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
59413395 ATCCTCTTCA
59413405 TCATGGTGCTCGTGG
1 TCATGGTGCTCGTGG
**
59413420 TCATGGT-CT--TCA
1 TCATGGTGCTCGTGG
59413432 TCATGGTGCTCGTGG
1 TCATGGTGCTCGTGG
59413447 TCATGGTG
1 TCATGGTG
59413455 ATCTGGCTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 8 0.29
13 2 0.07
14 2 0.07
15 16 0.57
ACGTcount: A:0.10, C:0.20, G:0.34, T:0.36
Consensus pattern (15 bp):
TCATGGTGCTCGTGG
Found at i:59413435 original size:27 final size:27
Alignment explanation
Indices: 59413399--59413453 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
59413389 CTCATGATCC
59413399 TCTTCATCATGGTGCTCGTGGTCATGG
1 TCTTCATCATGGTGCTCGTGGTCATGG
59413426 TCTTCATCATGGTGCTCGTGGTCATGG
1 TCTTCATCATGGTGCTCGTGGTCATGG
59413453 T
1 T
59413454 GATCTGGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.11, C:0.22, G:0.29, T:0.38
Consensus pattern (27 bp):
TCTTCATCATGGTGCTCGTGGTCATGG
Found at i:59416123 original size:17 final size:18
Alignment explanation
Indices: 59416101--59416135 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
59416091 GATATGATAC
*
59416101 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
59416118 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
59416136 ACGAGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:59416424 original size:22 final size:21
Alignment explanation
Indices: 59416389--59416464 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
59416379 AAAAGGTATC
* *
59416389 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
59416410 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
59416433 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
59416452 TGC-AATCATATCT
1 TACAAATCATATCT
59416465 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:59416481 original size:35 final size:37
Alignment explanation
Indices: 59416418--59416496 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
59416408 ATTACAAAAT
59416418 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
59416454 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
59416489 CATATCAT
1 CATATCAT
59416497 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:59416494 original size:14 final size:15
Alignment explanation
Indices: 59416439--59416494 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
59416429 AGATTGCATA
59416439 TCATATCTAAGATTG
1 TCATATCTAAGATTG
59416454 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
59416472 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
59416489 -CATATC
1 TCATATC
59416495 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:59416504 original size:17 final size:19
Alignment explanation
Indices: 59416425--59416496 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
59416415 AATCATATCT
59416425 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59416444 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59416462 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
59416479 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
59416497 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59416967 original size:44 final size:45
Alignment explanation
Indices: 59416851--59417005 Score: 242
Period size: 45 Copynumber: 3.5 Consensus size: 45
59416841 GGAAGGCGAT
*
59416851 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
59416896 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
59416941 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
59416985 ATCTG-TCATCTTGGATCTGCT
1 ATCTGCT-ATCTTCGATCTGCT
59417006 TCGATGTAAA
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
43 1 0.01
44 40 0.40
45 60 0.59
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.31
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:59417034 original size:89 final size:89
Alignment explanation
Indices: 59416851--59417079 Score: 257
Period size: 89 Copynumber: 2.5 Consensus size: 89
59416841 GGAAGGCGAT
* *
59416851 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTCGATCTGC
*
59416916 TCCCCGTCTAATACAGAGACGCCAA
66 T-CCCGTCTAACACAGAGACGCCAA
** *
59416941 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGC
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTCGATCTGC
* * * * *
59417005 T-TCGATGTAAACACATGA-AGGTCAG
66 TCCCG-TCT-AACACA-GAGACGCCAA
* * *
59417030 ATCTGCTATGTCTTTGATCTGCTTCTCGTCTAATACAAAGATGCCAAATC
1 ATCTGCTA--TCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
59417080 ATCTTGGATC
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
87 2 0.02
88 2 0.02
89 69 0.59
90 9 0.08
92 35 0.30
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (89 bp):
ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTCGATCTGC
TCCCGTCTAACACAGAGACGCCAA
Found at i:59417150 original size:78 final size:78
Alignment explanation
Indices: 59417019--59417235 Score: 319
Period size: 78 Copynumber: 2.8 Consensus size: 78
59417009 ATGTAAACAC
* * *
59417019 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTTCTCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
59417084 TGGATCTACTTCA
66 TGGATCTACTTCA
* * *
59417097 ATGAAGGTCCA-ATCTGTTATGACTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
59417161 TTGGATCTGCTTCA
65 TTGGATCTACTTCA
* * **
59417175 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
59417236 TGTTTCTTCG
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
77 2 0.02
78 119 0.97
79 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTACTTCA
Found at i:59417350 original size:287 final size:288
Alignment explanation
Indices: 59416904--59417522 Score: 821
Period size: 287 Copynumber: 2.1 Consensus size: 288
59416894 AAATCTGTTA
* * * * * * * * * *
59416904 TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTCAATCTGCTCCCCGTCT
1 TCTTCGATCTGCTCCCCATCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGAC-
* * * * * *
59416969 AATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCT
65 AGTACAGAGATGCCAAA--T-TCATCTTAGATCTGCTTCGACGTAAACACATGAAAGCCAAATCT
* * *
59417034 GCTATGTCTTTGATCTGCTTCTCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAAT
127 ACTATGTCTTCGATCTGCTCCTCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAAT
* *
59417099 GAAGGTCCAATCTGTTATGACTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
192 GAAGGTCCAATCTATTATGACTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* * * *
59417164 GATCTGCTTCAATGAAGGTCAGATCTGCTATG
257 GATCTGCTTCAATAAAGGACAAATATGCTATG
* * * **
59417196 TCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCCCCATCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
*
59417261 GTACAGAGATGCCAAA-TCATCTTAGATCTGCTTC-AGCGTAAACACGTGAAAGCCAAATCTACT
66 GTACAGAGATGCCAAATTCATCTTAGATCTGCTTCGA-CGTAAACACATGAAAGCCAAATCTACT
* * *
59417324 ATGTCTTCGATCTGCTCC-CTGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCTTCAATGA
130 ATGTCTTCGATCTGCTCCTC-GTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAATGA
*
59417388 AGGTCCAATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
194 AGGTCCAATCTATTATGACTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
*
59417453 TCTGCTTCAATAAAGGACAAATATGCTGTG
259 TCTGCTTCAATAAAGGACAAATATGCTATG
* *
59417483 TCTTCGGTCTGCTCCCCATCTAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCCCCATCGAATACAGAGATGCCAAATC
59417523 ATCTTGGATC
Statistics
Matches: 284, Mismatches: 41, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
286 2 0.01
287 215 0.76
291 16 0.06
292 51 0.18
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (288 bp):
TCTTCGATCTGCTCCCCATCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACA
GTACAGAGATGCCAAATTCATCTTAGATCTGCTTCGACGTAAACACATGAAAGCCAAATCTACTA
TGTCTTCGATCTGCTCCTCGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAATGAAG
GTCCAATCTATTATGACTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATC
TGCTTCAATAAAGGACAAATATGCTATG
Found at i:59417367 original size:88 final size:83
Alignment explanation
Indices: 59417262--59417615 Score: 339
Period size: 78 Copynumber: 4.4 Consensus size: 83
59417252 TCTCTGACAG
*
59417262 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTATG
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCA-C-T-AA-A-GTGAAAGCCAAATCTACTATG
*
59417327 TCTTCGATCTGCTCCCTGTCTAA
61 TCTTCGATCTGCTCCCCGTCTAA
* * *
59417350 TACAGAGATGCTAAATCATCTTGGATCTGCTT--C--AA-TGAAGGTCC-AATCTATTATGTCTT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCACTAAAGTGAAAG-CCAAATCTACTATGTCTT
*
59417409 CAATCTGCTCCCCGTCTAA
65 CGATCTGCTCCCCGTCTAA
* * * *
59417428 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAG-G--A--CAAATATGCTGTGTCTTC
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCACTAAAGTGAAAGCCAAATCTACTATGTCTTC
* *
59417488 GGTCTGCTCCCCATCTAA
66 GATCTGCTCCCCGTCTAA
* * *
59417506 TACAGAGATGCCAAATCATCTTGGATCTGCTT--C--AA-TGAAGGTCAGATCTACTATGTCTTC
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCACTAAAGTGAAAGCCAAATCTACTATGTCTTC
**
59417566 GATCTGCTCCTTGTC-AA
66 GATCTGCTCCCCGTCTAA
** *
59417583 CGCA-AGGATGCCAAATCATCTTGGATCTTCTTC
1 TACAGA-GATGCCAAATCATCTTGGATCTGCTTC
59417616 GATGTGAAGA
Statistics
Matches: 223, Mismatches: 29, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
74 3 0.01
76 1 0.00
77 30 0.13
78 151 0.68
79 2 0.01
80 1 0.00
81 1 0.00
82 3 0.01
85 1 0.00
88 30 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (83 bp):
TACAGAGATGCCAAATCATCTTGGATCTGCTTCACTAAAGTGAAAGCCAAATCTACTATGTCTTC
GATCTGCTCCCCGTCTAA
Found at i:59417445 original size:78 final size:78
Alignment explanation
Indices: 59417316--59417615 Score: 408
Period size: 78 Copynumber: 3.9 Consensus size: 78
59417306 GTGAAAGCCA
* *
59417316 AATCTACTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCT
1 AATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
59417381 TCAATGAAGGTCC
66 TCAATGAAGGTCC
* *
59417394 AATCTATTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
1 AATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
* * *
59417459 TCAATAAAGGACA
66 TCAATGAAGGTCC
* * * * *
59417472 AATATGCTGTGTCTTCGGTCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
1 AATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
59417537 TCAATGAAGGT-C
66 TCAATGAAGGTCC
** ** *
59417549 AGATCTACTATGTCTTCGATCTGCTCCTTGTC-AACGCA-AGGATGCCAAATCATCTTGGATCTT
1 A-ATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGA-GATGCCAAATCATCTTGGATCTG
59417612 CTTC
64 CTTC
59417616 GATGTGAAGA
Statistics
Matches: 193, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
76 1 0.01
77 31 0.16
78 161 0.83
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (78 bp):
AATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
TCAATGAAGGTCC
Found at i:59417876 original size:220 final size:220
Alignment explanation
Indices: 59417558--59418004 Score: 745
Period size: 220 Copynumber: 2.0 Consensus size: 220
59417548 CAGATCTACT
* * *
59417558 ATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTTCTTCGATGTGA
1 ATGTCTTTGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATGTGA
*
59417623 AGACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAA
66 AAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAA
* *
59417688 TCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAACG
131 TCTGTTTCTTCGATTTATTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAACG
*
59417753 TAAACACGTGAAA-GCCAAATCTGCA
196 TAAACACCT-AAAGGCCAAATCTGCA
*
59417778 ATGTCTTTGATCTTCTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATGTGA
1 ATGTCTTTGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATGTGA
* *
59417843 AAACATCCGAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAA
66 AAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAA
* *
59417908 TCTGTTTCTTCGATTTATTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCGCTTCAGCG
131 TCTGTTTCTTCGATTTATTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAACG
* *
59417973 TAAACACCTAAAGGTCAAATCTGCT
196 TAAACACCTAAAGGCCAAATCTGCA
59417998 ATG-CTTT
1 ATGTCTTT
59418005 AGCCTGTTAC
Statistics
Matches: 212, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
219 7 0.03
220 205 0.97
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
ATGTCTTTGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATGTGA
AAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAA
TCTGTTTCTTCGATTTATTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAACG
TAAACACCTAAAGGCCAAATCTGCA
Found at i:59425461 original size:35 final size:35
Alignment explanation
Indices: 59425415--59425484 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
59425405 AGGCTTAGAT
59425415 AGTGTGGACGACTTCGACTTTGAGATCCCCGAGAC
1 AGTGTGGACGACTTCGACTTTGAGATCCCCGAGAC
59425450 AGTGTGGACGACTTCGACTTTGAGATCCCCGAGAC
1 AGTGTGGACGACTTCGACTTTGAGATCCCCGAGAC
59425485 CGTAGCTAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (35 bp):
AGTGTGGACGACTTCGACTTTGAGATCCCCGAGAC
Found at i:59426861 original size:9 final size:9
Alignment explanation
Indices: 59426847--59426883 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
59426837 TATAGTTTGA
59426847 TATTCGAAT
1 TATTCGAAT
59426856 TATTCGAAT
1 TATTCGAAT
*
59426865 TATTCGAGT
1 TATTCGAAT
59426874 TATTCGAAT
1 TATTCGAAT
59426883 T
1 T
59426884 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:59426960 original size:18 final size:18
Alignment explanation
Indices: 59426934--59426968 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
59426924 ATTCGAGTTG
*
59426934 ACTCGAATAACTCGATTA
1 ACTCAAATAACTCGATTA
59426952 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
59426969 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:59427390 original size:39 final size:39
Alignment explanation
Indices: 59427332--59427451 Score: 177
Period size: 39 Copynumber: 3.1 Consensus size: 39
59427322 CCGGGTACCA
* * * * *
59427332 TTCCAGCACGTAACTTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
59427371 TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
* *
59427410 TCCCAGCATATAGCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
59427449 TTC
1 TTC
59427452 AAATACCATG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
Found at i:59428752 original size:21 final size:21
Alignment explanation
Indices: 59428728--59428768 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
59428718 TGGCAATTTC
59428728 AATTCATACTT-TTCAACCATG
1 AATTC-TACTTATTCAACCATG
*
59428749 AATTCTACTTATTCAGCCAT
1 AATTCTACTTATTCAACCAT
59428769 CATTTAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (21 bp):
AATTCTACTTATTCAACCATG
Found at i:59435033 original size:27 final size:27
Alignment explanation
Indices: 59435003--59435180 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
59434993 ATATTGAGTC
* * * *
59435003 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
59435030 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59435057 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
59435085 CGCACACTTAGTGCCGCATGGTCAAGT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
59435112 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
59435139 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59435166 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59435181 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:59435142 original size:82 final size:81
Alignment explanation
Indices: 59435024--59435179 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
59435014 TGCTATATAA
* *
59435024 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
59435089 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
59435106 TCAAGTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
59435170 CACTTAGTGC
65 CACTTAGTGC
59435180 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:59443090 original size:27 final size:27
Alignment explanation
Indices: 59443060--59443237 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
59443050 ATATTGAGTC
* * * *
59443060 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
59443087 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59443114 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
59443142 CGCACACTTAGTGCCGCATGGTCAAGT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
59443169 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
59443196 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59443223 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59443238 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:59443199 original size:82 final size:81
Alignment explanation
Indices: 59443081--59443236 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
59443071 TGCTATATAA
* *
59443081 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
59443146 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
59443163 TCAAGTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
59443227 CACTTAGTGC
65 CACTTAGTGC
59443237 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:59445161 original size:17 final size:17
Alignment explanation
Indices: 59445139--59445173 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
59445129 GATATGATAC
59445139 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
59445156 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
59445173 T
1 T
59445174 CGGGAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:59445461 original size:22 final size:21
Alignment explanation
Indices: 59445426--59445483 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
59445416 AAAAGGTATC
* *
59445426 TACAAATTAAATCTCTAAAAT
1 TACAAATCATATCTCTAAAAT
*
59445447 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAAAT
* *
59445470 TGCATATCATATCT
1 TACAAATCATATCT
59445484 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:59445518 original size:35 final size:37
Alignment explanation
Indices: 59445455--59445552 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
59445445 ATTACAAAAT
59445455 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
*
59445491 CA-ATCATATCTAAGATTG-TATCATATCTAGGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
59445526 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
59445553 TGAAGATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.38
36 19 0.34
37 10 0.18
38 6 0.11
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:59445560 original size:17 final size:19
Alignment explanation
Indices: 59445462--59445552 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
59445452 AATCATATCT
59445462 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59445481 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59445499 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
59445516 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59445535 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
59445553 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59447039 original size:56 final size:59
Alignment explanation
Indices: 59446971--59447129 Score: 181
Period size: 56 Copynumber: 2.7 Consensus size: 59
59446961 TTGAATTTGA
59446971 ATAA-TATTATTAAATATAATTTAATAAAAAATAATA-AGTAATTTAAT-CATATTTAAC
1 ATAATTATTATTAAATATAATTTAATAAAAAATAATATA-TAATTTAATACATATTTAAC
* * *
59447028 ATTA-T-TTATTAAATATAATTTAAT--AAAATAATATATAATTTAATAACATTTTTAAT
1 ATAATTATTATTAAATATAATTTAATAAAAAATAATATATAATTTAAT-ACATATTTAAC
59447084 ATAATTATTATTAAAATATGAA-TTAATAAAAATCATAATATATAAT
1 ATAATTATTATT-AAATAT-AATTTAATAAAAA--ATAATATATAAT
59447130 ATTATAAAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
54 18 0.21
55 1 0.01
56 30 0.34
57 5 0.06
58 5 0.06
59 11 0.13
60 2 0.02
61 3 0.03
63 12 0.14
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (59 bp):
ATAATTATTATTAAATATAATTTAATAAAAAATAATATATAATTTAATACATATTTAAC
Found at i:59450323 original size:27 final size:27
Alignment explanation
Indices: 59450275--59450400 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
59450265 TGGACACATC
*
59450275 TTAGCTCTT-ATGAGCATT-CCGTTAAA
1 TTAGCTCTTCGTGAGC-TTCCCGTTAAA
*
59450301 TTAGCTCATCGTGAGCTTCCCGTTAAA
1 TTAGCTCTTCGTGAGCTTCCCGTTAAA
*
59450328 TTAGCTCTTCGCGAGCTTCCCGTTAAA
1 TTAGCTCTTCGTGAGCTTCCCGTTAAA
*
59450355 TTAGCTCTTCGTGAGCTTCCCATTAAA
1 TTAGCTCTTCGTGAGCTTCCCGTTAAA
** *
59450382 TTATATCTTTGTGAGCTTC
1 TTAGCTCTTCGTGAGCTTC
59450401 TCAATAATGC
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 10 0.11
27 79 0.89
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (27 bp):
TTAGCTCTTCGTGAGCTTCCCGTTAAA
Found at i:59453233 original size:40 final size:41
Alignment explanation
Indices: 59453077--59453304 Score: 277
Period size: 40 Copynumber: 5.6 Consensus size: 41
59453067 TCAATATATA
* * * * * *
59453077 ATATATCTGGGTTAAAATCACACAGGCTTTGTGCTAGTAATAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGT-A-AT
* *
59453120 ATATATCCGGGTTAAAGTCCTGCAGGCTTCGTGCTGGTTAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
*
59453161 ATATATCTGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
*
59453202 ATATATCCAGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
* *
59453242 ATATATCCGGGTTAAA-TCCCGCAGGCTTAGTCCT-GT-A-
1 ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
*
59453279 CTATATCCGGGCTTAAAGTCCCGCAG
1 ATATATCCGGG-TTAAAGTCCCGCAG
59453305 CCTTTGAGCC
Statistics
Matches: 166, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
37 10 0.06
38 6 0.04
39 10 0.06
40 55 0.33
41 54 0.33
43 31 0.19
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (41 bp):
ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAAT
Found at i:59461691 original size:47 final size:47
Alignment explanation
Indices: 59461637--59461877 Score: 347
Period size: 47 Copynumber: 5.1 Consensus size: 47
59461627 TTAGGATTTT
*** *
59461637 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
59461684 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
59461731 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
59461778 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
59461825 ATGTGGTGAATATGAGCATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
59461872 ATGTGA
1 ATGTGA
59461878 AATATATATA
Statistics
Matches: 172, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 172 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:59461756 original size:94 final size:94
Alignment explanation
Indices: 59461658--59461877 Score: 395
Period size: 94 Copynumber: 2.3 Consensus size: 94
59461648 GTGAATGTGT
59461658 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
59461723 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
*
59461752 ATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
59461817 AATGGCCAATGTGGTGAATATGAGCATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* * *
59461846 ATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
59461878 AATATATATA
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 120 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGGTGAATATGAACATGC
Found at i:59462448 original size:40 final size:41
Alignment explanation
Indices: 59462353--59462502 Score: 209
Period size: 40 Copynumber: 3.7 Consensus size: 41
59462343 CAATATATAG
*
59462353 TATATCCGGGTTAAAGTCTCGCAGGCTTCGTGCTGGTAATATA
1 TATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGT-A-ATA
59462396 TATATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
1 TATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAATA
* *
59462436 TATATCCGGGTTAAA-TCCCACAGGCTTAGTGCTGGT-AT-
1 TATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAATA
*
59462474 TATATCCGGGCTTAAAGCCCCGCAGGCTT
1 TATATCCGGG-TTAAAGTCCCGCAGGCTT
59462503 TGAGCCAGTG
Statistics
Matches: 100, Mismatches: 5, Indels: 7
0.89 0.04 0.06
Matches are distributed among these distances:
38 10 0.10
39 7 0.07
40 47 0.47
41 1 0.01
42 20 0.20
43 15 0.15
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (41 bp):
TATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAATA
Found at i:59462471 original size:82 final size:81
Alignment explanation
Indices: 59462353--59462502 Score: 207
Period size: 82 Copynumber: 1.8 Consensus size: 81
59462343 CAATATATAG
* * * *
59462353 TATATCCGGGTTAAAGTCTCGCAGGCTTCGTGCTGGTAATATATATATCCGGG-TTAAA-TCCCG
1 TATATCCGGGTTAAAGTCCCACAGGCTTAGTGCTGG---TAT-TATATCCGGGCTTAAAGCCCCG
59462416 CAGGCTTCGTGCTGGTAATA
62 CAGGCTTCGTGCTGGTAATA
59462436 TATATCCGGGTTAAA-TCCCACAGGCTTAGTGCTGGTATTATATCCGGGCTTAAAGCCCCGCAGG
1 TATATCCGGGTTAAAGTCCCACAGGCTTAGTGCTGGTATTATATCCGGGCTTAAAGCCCCGCAGG
59462500 CTT
66 CTT
59462503 TGAGCCAGTG
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
78 10 0.16
79 8 0.13
80 11 0.18
82 17 0.28
83 15 0.25
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (81 bp):
TATATCCGGGTTAAAGTCCCACAGGCTTAGTGCTGGTATTATATCCGGGCTTAAAGCCCCGCAGG
CTTCGTGCTGGTAATA
Found at i:59465538 original size:27 final size:28
Alignment explanation
Indices: 59465495--59465553 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
59465485 GTTCACTTAC
*
59465495 AAATCAAGAAAATCGAGATT-TGGACTT
1 AAATCAAGAAAATCGAGATTATGGACTA
* *
59465522 AAATC-AGAAAGTACGAGGTTATGGACTA
1 AAATCAAGAAAAT-CGAGATTATGGACTA
59465550 AAAT
1 AAAT
59465554 AGAGTAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 11 0.41
28 10 0.37
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (28 bp):
AAATCAAGAAAATCGAGATTATGGACTA
Found at i:59470847 original size:15 final size:15
Alignment explanation
Indices: 59470824--59470860 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
59470814 ATCGTCGTCG
*
59470824 TCGTCATCATCATCA
1 TCGTTATCATCATCA
59470839 TCGTTATCATCATCA
1 TCGTTATCATCATCA
*
59470854 TCTTTAT
1 TCGTTAT
59470861 ATCCATATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.05, T:0.43
Consensus pattern (15 bp):
TCGTTATCATCATCA
Found at i:59471491 original size:24 final size:24
Alignment explanation
Indices: 59471459--59471512 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
59471449 GCTCAATTGT
*
59471459 AAGTCCGTTCTAACCCCGTTTTTC
1 AAGTTCGTTCTAACCCCGTTTTTC
59471483 AAGTTCGTTCTAACCCCGTTTTTC
1 AAGTTCGTTCTAACCCCGTTTTTC
59471507 AAGTTC
1 AAGTTC
59471513 TTTACGCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.39
Consensus pattern (24 bp):
AAGTTCGTTCTAACCCCGTTTTTC
Found at i:59482811 original size:26 final size:26
Alignment explanation
Indices: 59482774--59482857 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
59482764 TGATTCAAAT
* *
59482774 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
59482800 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
59482826 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
59482852 TGATAA
1 TGATAA
59482858 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:59487695 original size:26 final size:26
Alignment explanation
Indices: 59487666--59487749 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
59487656 TGATACAAAT
** *
59487666 TGATAATATGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
59487692 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
59487718 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
59487744 TGATAA
1 TGATAA
59487750 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:59489262 original size:26 final size:26
Alignment explanation
Indices: 59489233--59489285 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
59489223 TTTACAGTTT
*
59489233 TACCTCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
59489259 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
59489285 T
1 T
59489286 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:59491545 original size:22 final size:23
Alignment explanation
Indices: 59491497--59491544 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
59491487 TGATTTAAAC
*
59491497 AAATACTCATATTTATATAATTA
1 AAATACTCATAATTATATAATTA
*
59491520 AAATATTCATAATT-TATAATATA
1 AAATACTCATAATTATATAAT-TA
59491543 AA
1 AA
59491545 TGTTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (23 bp):
AAATACTCATAATTATATAATTA
Found at i:59491622 original size:15 final size:16
Alignment explanation
Indices: 59491602--59491632 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
59491592 ACATTACTTA
59491602 AAATTT-AAATTTATT
1 AAATTTAAAATTTATT
59491617 AAATTTAAAATTTATT
1 AAATTTAAAATTTATT
59491633 TTTCTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AAATTTAAAATTTATT
Found at i:59491681 original size:24 final size:22
Alignment explanation
Indices: 59491637--59491681 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
59491627 TTTATTTTTC
*
59491637 TTCAAAAAATTTAAAATTCATT
1 TTCAAAAAAATTAAAATTCATT
*
59491659 TTCAAATAAAATTATAATATCAT
1 TTCAAA-AAAATTAAAAT-TCAT
59491682 ATAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
TTCAAAAAAATTAAAATTCATT
Found at i:59498267 original size:19 final size:20
Alignment explanation
Indices: 59498245--59498291 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
59498235 TATATTAAAT
59498245 ATAAAA-ATGTGATGTTTTA
1 ATAAAATATGTGATGTTTTA
59498264 ATAAAAGTTATGTGATGTTTTA
1 ATAAAA--TATGTGATGTTTTA
59498286 ATAAAA
1 ATAAAA
59498292 GTTATCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.24
22 19 0.76
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
ATAAAATATGTGATGTTTTA
Found at i:59498276 original size:22 final size:22
Alignment explanation
Indices: 59498251--59498296 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
59498241 AAATATAAAA
59498251 ATGTGATGTTTTAATAAAAGTT
1 ATGTGATGTTTTAATAAAAGTT
59498273 ATGTGATGTTTTAATAAAAGTT
1 ATGTGATGTTTTAATAAAAGTT
59498295 AT
1 AT
59498297 CTTAAGGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (22 bp):
ATGTGATGTTTTAATAAAAGTT
Found at i:59503783 original size:19 final size:19
Alignment explanation
Indices: 59503749--59503786 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
59503739 AGGTTTAATG
59503749 TTAGATTAATAGTTTTTGT
1 TTAGATTAATAGTTTTTGT
59503768 TTAGATTAATAGTTTTTGT
1 TTAGATTAATAGTTTTTGT
59503787 AAAGTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (19 bp):
TTAGATTAATAGTTTTTGT
Found at i:59504300 original size:41 final size:39
Alignment explanation
Indices: 59504255--59504353 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 39
59504245 AGACAAAGCA
*
59504255 GCTATATATGGCACTTAGTGTGTGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCG-GATTGAGATAGCTT-G
* *
59504296 GCTATATATGGCACTTAATGTGCGGTTTGAGATAGCTTG
1 GCTATATATGGCACTTAGTGTGCGGATTGAGATAGCTTG
* * *
59504335 GCTATGTACGACACTTAGT
1 GCTATATATGGCACTTAGT
59504354 ATACGAGATA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 16 0.31
40 13 0.25
41 22 0.43
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.34
Consensus pattern (39 bp):
GCTATATATGGCACTTAGTGTGCGGATTGAGATAGCTTG
Found at i:59504338 original size:39 final size:41
Alignment explanation
Indices: 59504255--59504339 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 41
59504245 AGACAAAGCA
* *
59504255 GCTATATATGGCACTTAGTGTGTGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAATGTGCGAGATTGAGATAGCTTCG
*
59504296 GCTATATATGGCACTTAATGTGCG-GTTTGAGATAGCTT-G
1 GCTATATATGGCACTTAATGTGCGAGATTGAGATAGCTTCG
59504335 GCTAT
1 GCTAT
59504340 GTACGACACT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 6 0.15
40 13 0.32
41 22 0.54
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (41 bp):
GCTATATATGGCACTTAATGTGCGAGATTGAGATAGCTTCG
Found at i:59511045 original size:27 final size:27
Alignment explanation
Indices: 59511015--59511192 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
59511005 ATATTGAGTC
* *
59511015 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
59511042 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
59511069 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
59511097 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
59511124 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
59511151 CACACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
59511178 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59511193 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:59511157 original size:82 final size:81
Alignment explanation
Indices: 59511036--59511191 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
59511026 TGCTATATAA
* * *
59511036 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCACACACTTAGTGCAACATAGTCAAA-TCGCA
59511101 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
59511118 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCACACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCACACACTTAGTGCAACATAGTCAAATCGCA
59511182 CACTTAGTGC
65 CACTTAGTGC
59511192 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCACACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:59513197 original size:46 final size:44
Alignment explanation
Indices: 59513095--59513214 Score: 168
Period size: 46 Copynumber: 2.6 Consensus size: 44
59513085 TATTTGTGTG
59513095 GATGCTATGTCCCAGACATGGTCTTACACTGACACATCTCATAGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGACACATCTCATAGCC
* * * *
59513141 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCATAGCC
59513187 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
59513215 AAGCACTAGC
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
44 12 0.18
45 13 0.19
46 43 0.63
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGACACATCTCATAGCC
Found at i:59516704 original size:12 final size:12
Alignment explanation
Indices: 59516687--59516713 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
59516677 TCATTGAGTT
59516687 ACATGGCCTAAC
1 ACATGGCCTAAC
59516699 ACATGGCCTAAC
1 ACATGGCCTAAC
59516711 ACA
1 ACA
59516714 CGAGCGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.33, G:0.15, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAAC
Found at i:59518520 original size:49 final size:49
Alignment explanation
Indices: 59518462--59518686 Score: 181
Period size: 49 Copynumber: 4.6 Consensus size: 49
59518452 TGACATGTGT
* *
59518462 CAGTGTAAGACCTGTCTGGGATATGGCATCTACAC-CGATAGAT-GAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGGA-AGC
* * * * * *
59518511 CAGTGTAAGACTTGTCTAGGACATGGCGTCGGCCTCGATATATGGAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGC
* * * * *
59518560 CAGTGTAAGACCTGTCTGGGACATGGCGTCGGCCTTGATATATGGAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGC
* * * * * *
59518609 TAGTGTAAGACCTGTCTGGGACGTAGCAACGACTTAGAT-G-TGTG-AGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATG-GAAGC
* * *
59518656 CAGTGTAAGACCATGTTTGGAACAAGGCATC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATC
59518687 AGCATCGTAC
Statistics
Matches: 144, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
47 15 0.10
48 14 0.10
49 113 0.78
50 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGC
Found at i:59518614 original size:98 final size:93
Alignment explanation
Indices: 59518371--59518630 Score: 267
Period size: 98 Copynumber: 2.8 Consensus size: 93
59518361 TATGTGTACT
* * * * *
59518371 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATATGCAAGCCAATTTAAGACTTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGGAAGCCAGTGTAAGACTTGTCT
* *
59518435 AGGACATGGCGTCGGCTTGACATGTGTC
66 AGGACATGGCGTCGGCTCGACATGAGTC
* *
59518463 AGTGTAAGACCTGTCTGGGATATGGCATCTA-CAC-CGATAGAT-GAGAGCCAGTGTAAGACTTG
1 AGTGTAAGACCTGTCTGGGACATGGCATC-AGC-CTCGATATATGGA-AGCCAGTGTAAGACTTG
*
59518525 TCTAGGACATGGCGTCGGCCTCGATATATGGAAGTC
63 TCTAGGACATGGCGTCGG-CTCG--ACAT-G-AGTC
* * * ** *
59518561 AGTGTAAGACCTGTCTGGGACATGGCGTCGGCCTTGATATATGGAAGTTAGTGTAAGACCTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGGAAGCCAGTGTAAGACTTGTCT
*
59518626 GGGAC
66 AGGAC
59518631 GTAGCAACGA
Statistics
Matches: 137, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
92 22 0.16
93 45 0.33
94 5 0.04
96 3 0.02
97 2 0.01
98 58 0.42
99 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGGAAGCCAGTGTAAGACTTGTCT
AGGACATGGCGTCGGCTCGACATGAGTC
Found at i:59521255 original size:39 final size:39
Alignment explanation
Indices: 59521192--59521305 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 39
59521182 TTCAGTGATG
* * *
59521192 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
* *
59521231 TATATCCGGATTTAAGGTCTGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
* * * * *
59521270 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGG
59521306 TATTATACCG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
38 5 0.08
39 57 0.92
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
Found at i:59524113 original size:43 final size:42
Alignment explanation
Indices: 59524035--59524115 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 42
59524025 AATGTTGACT
* * * * *
59524035 ACACGGGCTGAGACACGGTCGTGTGTCTCAATCGTGTGAGGG
1 ACACGGCCTGAGACACGGGCATGTGGCCCAATCGTGTGAGGG
*
59524077 ACACGGCCTGGAGACACGGGCATGTGGCCCAGTCGTGTG
1 ACACGGCCT-GAGACACGGGCATGTGGCCCAATCGTGTG
59524116 GTTCGATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 8 0.25
43 24 0.75
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.19
Consensus pattern (42 bp):
ACACGGCCTGAGACACGGGCATGTGGCCCAATCGTGTGAGGG
Found at i:59527082 original size:40 final size:40
Alignment explanation
Indices: 59527019--59527242 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
59527009 TATTCGGATG
* * *
59527019 ATATCTGGGCTAAATCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
59527059 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
59527102 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
59527142 ATATCCGGGCTAAGTCTCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
59527182 ATATCCGGGCAAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
59527222 ATATCC-GGCTAAATCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
59527243 ATACTTGGGT
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 11 0.07
40 108 0.69
41 1 0.01
43 37 0.24
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:59527164 original size:83 final size:80
Alignment explanation
Indices: 59527025--59527242 Score: 262
Period size: 83 Copynumber: 2.7 Consensus size: 80
59527015 GATGATATCT
* * * * **
59527025 GGGCTAAATCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
59527090 CGAGTAGTTG-CTATACCC
66 C---TAG-TGACTATACCC
*
59527108 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
*
59527173 CTAGTGACTATATCC
66 CTAGTGACTATACCC
* * * *
59527188 GGGCAAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCTCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCTCGAAG
59527243 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.36
81 2 0.02
83 59 0.49
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
CTAGTGACTATACCC
Found at i:59531201 original size:40 final size:40
Alignment explanation
Indices: 59531143--59531366 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
59531133 TATTCGGATG
* *
59531143 ATATCTGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
59531183 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
59531226 ATACCCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
59531266 ATATCCGGGCTAAGTCTCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
59531306 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
59531346 ATATCC-GGCTAAATCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
59531367 ATACTTGGGT
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 108 0.69
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:59531288 original size:83 final size:80
Alignment explanation
Indices: 59531149--59531366 Score: 262
Period size: 83 Copynumber: 2.7 Consensus size: 80
59531139 GATGATATCT
* * * * **
59531149 GGGCTAAATCCCGAAGGCATTTGTGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
59531214 CGAGTAGTTG-CTATACCC
66 C---TAG-TGACTATACCC
* *
59531232 GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
*
59531297 CTAGTGACTATATCC
66 CTAGTGACTATACCC
* * *
59531312 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCTCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCTCGAAG
59531367 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.37
81 2 0.02
83 58 0.48
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCATG
CTAGTGACTATACCC
Found at i:59535778 original size:40 final size:40
Alignment explanation
Indices: 59535674--59535880 Score: 298
Period size: 40 Copynumber: 5.2 Consensus size: 40
59535664 TGGATGATAA
*
59535674 CCGGGCTAAGTCCCGAAGGCATTTGTG-GTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATA-T
59535714 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
59535753 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
59535793 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
59535833 CCCGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
59535873 CC-GGCTAA
1 CCGGGCTAA
59535881 ATTCTAAAGG
Statistics
Matches: 157, Mismatches: 6, Indels: 9
0.91 0.03 0.05
Matches are distributed among these distances:
39 42 0.27
40 115 0.73
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:59537248 original size:40 final size:38
Alignment explanation
Indices: 59537193--59537292 Score: 119
Period size: 40 Copynumber: 2.6 Consensus size: 38
59537183 GTGTTACACT
* * *
59537193 CTTGGTGTGTAGGGTTGCATGGGTTGATTTTATCCCCATA
1 CTTGGTGTGTAGGGTTGGATGGGTCGATCTTATCCCC--A
* *
59537233 CTTGGTGTGTAGGGTTGGGTGGGTCGATCTTGTCCCCA
1 CTTGGTGTGTAGGGTTGGATGGGTCGATCTTATCCCCA
* *
59537271 CATGGTGTGTTGGGTTGGATGG
1 CTTGGTGTGTAGGGTTGGATGG
59537293 AAATGGTGTG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 20 0.38
40 32 0.62
ACGTcount: A:0.11, C:0.14, G:0.38, T:0.37
Consensus pattern (38 bp):
CTTGGTGTGTAGGGTTGGATGGGTCGATCTTATCCCCA
Found at i:59542151 original size:38 final size:37
Alignment explanation
Indices: 59542090--59542249 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 37
59542080 ATATTTGATG
*
59542090 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TATGCTGGAATTA
*
59542130 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGC-TTATGCTGG-AATTA
* * *
59542168 TATCCGTGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-ATGCTGGAATTA
*
59542206 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTA-TGCTGGAATTA
59542244 TATCCG
1 TATCCG
59542250 AGCTTAAAGT
Statistics
Matches: 109, Mismatches: 6, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
37 3 0.03
38 90 0.83
39 8 0.07
40 8 0.07
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (37 bp):
TATCCGGGTTAAATCCCGCAGGCTTATGCTGGAATTA
Found at i:59542199 original size:76 final size:76
Alignment explanation
Indices: 59542106--59542249 Score: 236
Period size: 76 Copynumber: 1.9 Consensus size: 76
59542096 GGCTTAAAGA
*
59542106 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATAT
1 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATAT
59542171 CCGTGTTAAAT
66 CCGTGTTAAAT
* * *
59542182 CCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTATA
1 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATA
59542246 TCCG
65 TCCG
59542250 AGCTTAAAGT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
75 1 0.02
76 62 0.98
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (76 bp):
CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATAT
CCGTGTTAAAT
Found at i:59543855 original size:2 final size:2
Alignment explanation
Indices: 59543848--59543883 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
59543838 ACATAAATAT
* *
59543848 TG TG TG TG TG TG TG TA CG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
59543884 AAGCACAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.03, C:0.03, G:0.47, T:0.47
Consensus pattern (2 bp):
TG
Done.