Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 185 of 373
Found at i:62157021 original size:81 final size:81
Alignment explanation
Indices: 62156883--62157044 Score: 234
Period size: 81 Copynumber: 2.0 Consensus size: 81
62156873 ATCGTGTAAC
* ** * *
62156883 AGCCCGATTTTGGGCCTAGTTGAAATAGTGGTTTTGAGACCACAAATCTAACAAGGAAAAATTTT
1 AGCCCAATTTTGGGCCTAGTCAAAATAGTAGTTTTGAGACCACAAATCTAACAAGGAAAAATTTA
*
62156948 TTATTATTATTATTAT
66 TTATTACTATTATTAT
* * *
62156964 AGCCCAATTTTGGGCCTAGTCAAAATAGTAGTTTTGGGACCACAAATCTGACGAGGAAAAATTTA
1 AGCCCAATTTTGGGCCTAGTCAAAATAGTAGTTTTGAGACCACAAATCTAACAAGGAAAAATTTA
*
62157029 TTGTTACTATTATTAT
66 TTATTACTATTATTAT
62157045 TATATAATTA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (81 bp):
AGCCCAATTTTGGGCCTAGTCAAAATAGTAGTTTTGAGACCACAAATCTAACAAGGAAAAATTTA
TTATTACTATTATTAT
Found at i:62157044 original size:3 final size:3
Alignment explanation
Indices: 62157026--62157067 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
62157016 GAGGAAAAAT
* * *
62157026 TTA TTG TTA CTA TTA TTA TTA -TA TAA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
62157068 ATTTTTATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:62162892 original size:32 final size:32
Alignment explanation
Indices: 62162856--62162920 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
62162846 TGCATTTCAT
62162856 ACTCAATTTAATTCAATTCATGTCTTAGGCAA
1 ACTCAATTTAATTCAATTCATGTCTTAGGCAA
62162888 ACTCAATTTAATTCAATTCATGTCTTAGGCAA
1 ACTCAATTTAATTCAATTCATGTCTTAGGCAA
62162920 A
1 A
62162921 ATTACCATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.37
Consensus pattern (32 bp):
ACTCAATTTAATTCAATTCATGTCTTAGGCAA
Found at i:62171104 original size:27 final size:26
Alignment explanation
Indices: 62171056--62171107 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62171046 GCGAGACTGC
*
62171056 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
62171082 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
62171108 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62178217 original size:71 final size:67
Alignment explanation
Indices: 62178140--62178281 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
62178130 TCACCAGATA
* * *
62178140 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAAATTGCAGCGA
1 CAGATATTATGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAAATTGCAGCGA
62178205 GGCTGC
62 GGCTGC
* * * *
62178211 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAAATTGCAGCGAGGCT
62178276 GC
66 GC
62178278 CAGA
1 CAGA
62178282 ATGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 40 0.62
71 24 0.38
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAAATTGCAGCGAGGCT
GC
Found at i:62178259 original size:27 final size:26
Alignment explanation
Indices: 62178211--62178262 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62178201 GCGAGGCTGC
*
62178211 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
62178237 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
62178263 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62178533 original size:8 final size:8
Alignment explanation
Indices: 62178516--62178547 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
62178506 TACCAAGGTG
*
62178516 GGCCCCTT
1 GGCCCATT
62178524 GGCCCATT
1 GGCCCATT
62178532 GGCCCATT
1 GGCCCATT
62178540 GGCCCATT
1 GGCCCATT
62178548 TTTGGCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.09, C:0.41, G:0.25, T:0.25
Consensus pattern (8 bp):
GGCCCATT
Found at i:62185302 original size:39 final size:39
Alignment explanation
Indices: 62185239--62185442 Score: 300
Period size: 39 Copynumber: 5.2 Consensus size: 39
62185229 GGACTTTAGC
* * * *
62185239 CCGGACATATTTCTAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* * * *
62185278 CTGGTTATAATTCCAGGACATAGCCTGTGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
62185317 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
**
62185356 CCGGATATAATTCCAGCACATAGCCTGCAAACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
62185395 CCAGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
62185434 CTGGATATA
1 CCGGATATA
62185443 CTTCATCAAT
Statistics
Matches: 146, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:62193088 original size:39 final size:39
Alignment explanation
Indices: 62193040--62193185 Score: 247
Period size: 39 Copynumber: 3.7 Consensus size: 39
62193030 CAACACGTAC
* * *
62193040 CCTGTGGACCTTAAGTCTGGTTATAATTCCAGCACATAG
1 CCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAG
62193079 CCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAG
1 CCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAG
*
62193118 CCTGCAGACCTTAAGTCCGGATATAATTCCAGCACATAG
1 CCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAG
*
62193157 CCTACGGACCTTAAGTCCGGATATAATTC
1 CCTGCGGACCTTAAGTCCGGATATAATTC
62193186 ATCACTGAGT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 101 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (39 bp):
CCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAG
Found at i:62204288 original size:46 final size:46
Alignment explanation
Indices: 62204221--62204391 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
62204211 CGCCCCTAAG
* * * *
62204221 TGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
* * * **
62204267 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCATCCAT-AAA
* * ** * *
62204314 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
*
62204360 TGAACTCGGACTCAACTTAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
62204392 CTCAACCATC
Statistics
Matches: 97, Mismatches: 25, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
46 62 0.64
47 35 0.36
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
Found at i:62204333 original size:93 final size:93
Alignment explanation
Indices: 62204222--62204392 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
62204212 GCCCCTAAGT
* ***
62204222 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
62204287 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
62204315 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
62204380 CGAGTTCGGATGC
66 CGAGTTCGGATGC
62204393 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:62211296 original size:43 final size:43
Alignment explanation
Indices: 62211215--62211299 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
62211205 AAGTCATACA
* **
62211215 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAAACACATATCG
*
62211258 ATGCCACTATCCCAGACAG-GGTCTTAC-TCGTAAACACATATC
1 ATGCCAATATCCCAGAC-GTGGTCTTACAT-GTAAACACATATC
62211300 AGAATCACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:62216409 original size:40 final size:40
Alignment explanation
Indices: 62216366--62216709 Score: 530
Period size: 40 Copynumber: 8.6 Consensus size: 40
62216356 CAAGCTCAAT
* * * * * *
62216366 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
62216406 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
62216446 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * * *
62216486 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
62216526 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
62216566 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
62216606 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
62216646 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
62216686 TGCCTTC-GGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
62216710 CATTCAAATG
Statistics
Matches: 284, Mismatches: 18, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
39 19 0.07
40 264 0.93
41 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:62224971 original size:40 final size:40
Alignment explanation
Indices: 62224871--62225041 Score: 204
Period size: 39 Copynumber: 4.3 Consensus size: 40
62224861 GCTCCTCGTT
* * *
62224871 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
62224911 C-AATGCCTTCGGGACATAACCCGCATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
62224950 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
62224990 CAAAGGCCTTCGGG-CTTAACCCAGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCC-GGATTTAGTAACTCGCA
62225029 CAAATGCCTTCGG
1 CAAATGCCTTCGG
62225042 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 64 0.55
40 52 0.45
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:62225054 original size:79 final size:79
Alignment explanation
Indices: 62224871--62225084 Score: 218
Period size: 79 Copynumber: 2.7 Consensus size: 79
62224861 GCTCCTCGTT
* * * *
62224871 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGAA
62224936 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * *
62224950 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCC-G
* *
62225014 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * * *
62225029 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGAC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGAC
62225085 TTAGCCCGGA
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
78 3 0.03
79 86 0.79
80 20 0.18
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGAA
TTTAATAACTCGCA
Found at i:62225103 original size:41 final size:41
Alignment explanation
Indices: 62225026--62225103 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
62225016 TTTGTATCTC
* * *
62225026 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
62225067 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
62225104 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:62232139 original size:40 final size:40
Alignment explanation
Indices: 62232039--62232263 Score: 197
Period size: 40 Copynumber: 5.7 Consensus size: 40
62232029 GCTCCTCGTT
* * * * *
62232039 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
* *
62232079 C-AATGCCTTCAGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
* *
62232118 CGAATGCCTTCAGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
62232158 CAAAGGCCTTCGGGGCTTAACCCAGAATTT-GTATCTCGCA
1 CAAATGCCTTCAGGACTTAACCC-GGATTTAGTAACTCGCA
** * * * *
62232198 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCAGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
62232239 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCAGGACTTAACCCGGA
62232264 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 40 0.26
40 99 0.64
41 16 0.10
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:62232272 original size:41 final size:41
Alignment explanation
Indices: 62232195--62232272 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
62232185 TTTGTATCTC
* * *
62232195 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
62232236 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
62232273 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:62234280 original size:40 final size:40
Alignment explanation
Indices: 62234235--62234579 Score: 548
Period size: 40 Copynumber: 8.6 Consensus size: 40
62234225 CAAGCTCAAT
* * * * *
62234235 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
62234275 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
62234315 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * * *
62234355 CGCCGTCGGGTCTTAGCCCAGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
62234395 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
62234435 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
62234475 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
62234515 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
62234555 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
62234580 CATTCAAATG
Statistics
Matches: 282, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 279 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:62237149 original size:25 final size:24
Alignment explanation
Indices: 62237121--62237179 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
62237111 CTGGATGCCT
62237121 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGC-AA
*
62237146 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
62237171 AGCCCTTTT
1 AGCCCTTTT
62237180 CGGTAACAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 5 0.16
25 17 0.55
26 9 0.29
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:62237191 original size:24 final size:24
Alignment explanation
Indices: 62237132--62237203 Score: 81
Period size: 24 Copynumber: 2.9 Consensus size: 24
62237122 GCCTCTTTTA
*
62237132 ATAACTGGGGCAAAAGCCCTTTTTG
1 ATAACTGGGGC-AAAGCCCTTTTCG
62237157 ATAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTTCG
* * * *
62237182 GTAACAGGGGCATAGCCTTTTT
1 ATAACTGGGGCAAAGCCCTTTT
62237204 GTACTTCCTC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 17 0.41
25 15 0.37
26 9 0.22
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTCG
Found at i:62237281 original size:11 final size:11
Alignment explanation
Indices: 62237250--62237297 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
62237240 AAATGAATGC
62237250 ATCATGTGCAT
1 ATCATGTGCAT
*
62237261 ATCA--TACAT
1 ATCATGTGCAT
62237270 ATCATGTGCAT
1 ATCATGTGCAT
*
62237281 ATCATGT-CAA
1 ATCATGTGCAT
62237291 ATCATGT
1 ATCATGT
62237298 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:62241111 original size:23 final size:22
Alignment explanation
Indices: 62241056--62241112 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
62241046 TCAAACATAT
*
62241056 TCATTATTCATATATCAATATC
1 TCATTATTCATATATCAATAAC
*
62241078 TCATGTCTTCATATATCAATAAAC
1 TCAT-TATTCATATATCAAT-AAC
62241102 GTCATT-TTCAT
1 -TCATTATTCAT
62241113 GAATTTTGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 4 0.13
23 19 0.63
24 3 0.10
25 4 0.13
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (22 bp):
TCATTATTCATATATCAATAAC
Found at i:62241431 original size:42 final size:42
Alignment explanation
Indices: 62241383--62241541 Score: 194
Period size: 42 Copynumber: 3.6 Consensus size: 42
62241373 CTTCATTTTC
** * * *
62241383 TCGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
62241426 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
62241467 TCGATGCCATAGCCCAGCTATGGTCTTACACAGATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC--AT---AT-TCACATA
62241515 TCGATGCCATAGCCCAGCTATGGTCTT
1 TCGATGCCATAGCCCAGCTATGGTCTT
62241542 TCACGAATCA
Statistics
Matches: 102, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.61
43 1 0.01
44 2 0.02
47 2 0.02
48 33 0.32
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:62241525 original size:48 final size:49
Alignment explanation
Indices: 62241453--62241709 Score: 199
Period size: 48 Copynumber: 5.2 Consensus size: 49
62241443 TATGGTCTTA
* *
62241453 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACAG-AT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTATACAGAAT
62241502 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTT-T-CACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTATACA-GAAT
* * * * ** *
62241550 CATATATCTCA-CT-GATGCCATATCCCATATATGGTCTTATACAGTAGT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTATACAG-AAT
* * * * * *
62241598 -ATATATCAC--ACCGATGTCATATCCCAGATATGGTCTTATACGGAAGT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTATACAGAA-T
* * * *
62241645 -ACATAATCACATCTCTCCAATGCCATAGCCCAGCTATAGTCTTATACTAAAAT
1 CACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTATAC-AGAAT
62241698 CACATATCACAT
1 CACATATCACAT
62241710 GTTGCCATGG
Statistics
Matches: 167, Mismatches: 26, Indels: 28
0.76 0.12 0.13
Matches are distributed among these distances:
46 25 0.15
47 44 0.26
48 53 0.32
49 6 0.04
51 1 0.01
53 32 0.19
54 6 0.04
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTATACAGAAT
Found at i:62243749 original size:261 final size:264
Alignment explanation
Indices: 62243336--62243858 Score: 910
Period size: 261 Copynumber: 2.0 Consensus size: 264
62243326 ATTTTCTGAC
62243336 AAAATTTTAATACTACCTTATTGATACTCCATAAATACTTATAAAAATATTTACAGCTCGATTTA
1 AAAATTTTAATACTACCTTATTGATACTCCATAAATACTTATAAAAATATTTACAGCTCGATTTA
* * * *
62243401 TAAAATTGAGATCTCAATACCTATTTTCTTCAATTTCTTGACTTAGTAAATCTTTATAAAACACA
66 TAAAATCGAGATCTCAATACATATTTTCTTCAATTTCTCGACTTAATAAATCTTTATAAAACACA
*
62243466 AATTACTAATTTAAAAATCTCTCAAAAATCACATTTGGCTCATAATTATTAAACT-AATAAATTT
131 AATTACTAACTTAAAAATCTCTCAAAAATCACATTTGGCTCATAATTATTAAA-TAAATAAATTT
* *
62243530 ACGAGCTTATTTGTCGAATTTAGTGGTCTCGAACCACTATTCCCGACATAATTGAAAGTCGGCTA
195 ACGAGCTTATTTGTCAAATTTAGTGGTCTCGAACCACTATTCCCGACATAATTGAAAGCCGGCTA
62243595 TTACA
260 TTACA
62243600 AAAATTTTAATACTACCTTATTGATACTCCATAAATA-TT-T-AAAATATTTACAGCTCGATTTA
1 AAAATTTTAATACTACCTTATTGATACTCCATAAATACTTATAAAAATATTTACAGCTCGATTTA
* *
62243662 TAAAATCGAGATCTCGATACATGTTTTCTTCAATTTCTCGACTTAATAAATCTTTATAAAACACA
66 TAAAATCGAGATCTCAATACATATTTTCTTCAATTTCTCGACTTAATAAATCTTTATAAAACACA
62243727 AATTACTAACTTAAAAATCTCTCAAAAATCACATTTGGCTCATAATTATTAAATAAATAAATTTA
131 AATTACTAACTTAAAAATCTCTCAAAAATCACATTTGGCTCATAATTATTAAATAAATAAATTTA
* *
62243792 CTAGCTTATTTGTCAAATTTAGTGGTCTCGAACCACTATTCCCGACATTATTGAAAGCCGGCTAT
196 CGAGCTTATTTGTCAAATTTAGTGGTCTCGAACCACTATTCCCGACATAATTGAAAGCCGGCTAT
62243857 TA
261 TA
62243859 TAAGTGGCTA
Statistics
Matches: 247, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
260 1 0.00
261 206 0.83
262 1 0.00
263 2 0.01
264 37 0.15
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (264 bp):
AAAATTTTAATACTACCTTATTGATACTCCATAAATACTTATAAAAATATTTACAGCTCGATTTA
TAAAATCGAGATCTCAATACATATTTTCTTCAATTTCTCGACTTAATAAATCTTTATAAAACACA
AATTACTAACTTAAAAATCTCTCAAAAATCACATTTGGCTCATAATTATTAAATAAATAAATTTA
CGAGCTTATTTGTCAAATTTAGTGGTCTCGAACCACTATTCCCGACATAATTGAAAGCCGGCTAT
TACA
Found at i:62249619 original size:30 final size:30
Alignment explanation
Indices: 62249585--62249645 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62249575 TCCTTAACTC
62249585 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
62249615 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
62249645 A
1 A
62249646 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:62250963 original size:50 final size:49
Alignment explanation
Indices: 62250888--62251062 Score: 244
Period size: 50 Copynumber: 3.5 Consensus size: 49
62250878 TGAATACGCG
* * *
62250888 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTTAGATCGCA
* * *
62250938 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG-TTAGATCGCA
* *
62250988 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTTAGATCGCA
62251037 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
62251063 TGCATATCAA
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
49 33 0.29
50 77 0.69
51 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTTAGATCGCA
Found at i:62251071 original size:99 final size:100
Alignment explanation
Indices: 62250888--62251071 Score: 280
Period size: 99 Copynumber: 1.9 Consensus size: 100
62250878 TGAATACGCG
* * *
62250888 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAATCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAATCGCATGTGTAGTACTAAGT
**
62250953 GCAGGCTACTACGTGTATCAGATGATGAGGTCACA
66 GCAGGCTACTACGCATATCAGATGATGAGGTCACA
* * *
62250988 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GATCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAATCGCATGTGTAGTACTAAGT
*
62251052 GCAGGCTACTATGCATATCA
66 GCAGGCTACTACGCATATCA
62251072 AATAGCTTCG
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
99 38 0.51
100 37 0.49
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAATCGCATGTGTAGTACTAAGT
GCAGGCTACTACGCATATCAGATGATGAGGTCACA
Found at i:62251191 original size:27 final size:26
Alignment explanation
Indices: 62251161--62251212 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
62251151 GGGAAAATCG
62251161 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
62251188 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
62251213 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:62262832 original size:39 final size:39
Alignment explanation
Indices: 62262743--62262843 Score: 123
Period size: 39 Copynumber: 2.6 Consensus size: 39
62262733 TATTCGGATG
*
62262743 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCCAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTACCAGTAACT
* * * **
62262782 GTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTACCAGTAACT
*
62262822 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
62262844 TACTTGGGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 36 0.69
40 16 0.31
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGTACCAGTAACT
Found at i:62270583 original size:29 final size:29
Alignment explanation
Indices: 62270519--62270608 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
62270509 CACATACCTA
* *
62270519 TATATGGCCCACTAGGCCC-AATTACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
62270547 TATATGGCCTATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
62270576 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
62270605 TATA
1 TATA
62270609 GTCATGCTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
28 17 0.31
29 38 0.69
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:62276107 original size:15 final size:15
Alignment explanation
Indices: 62276084--62276113 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62276074 AGAAAAAGAG
62276084 TTAACCTTTACTTGC
1 TTAACCTTTACTTGC
*
62276099 TTAATCTTTACTTGC
1 TTAACCTTTACTTGC
62276114 GTACAACAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.07, T:0.50
Consensus pattern (15 bp):
TTAACCTTTACTTGC
Found at i:62286356 original size:46 final size:46
Alignment explanation
Indices: 62286289--62286455 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
62286279 TGTAACCCGC
*
62286289 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
62286335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * *
62286385 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
62286428 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGCGAACTCGGACTCAACTCAAC
62286456 TCAACGAGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 53 0.52
47 27 0.27
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:62299582 original size:27 final size:27
Alignment explanation
Indices: 62299551--62299728 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62299541 TAAATTGTAC
62299551 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62299578 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62299604 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62299632 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62299660 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62299687 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62299714 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62299729 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62299665 original size:82 final size:81
Alignment explanation
Indices: 62299552--62299707 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62299542 AAATTGTACA
* *
62299552 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62299616 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62299633 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62299698 TGCGAGTTGA
65 TGCGAATTGA
62299708 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62299719 original size:82 final size:81
Alignment explanation
Indices: 62299548--62299728 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62299538 GATTAAATTG
* *
62299548 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62299613 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62299629 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62299693 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62299711 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62299729 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62303173 original size:46 final size:46
Alignment explanation
Indices: 62303029--62303198 Score: 127
Period size: 46 Copynumber: 3.7 Consensus size: 46
62303019 TCTATACGTA
* *
62303029 CCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--ATATCTCATA-G
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTAG-CTTACATCTCA-AGG
* * * *
62303075 CCGATGCATGT-CCAAGACATGTGTTACATTGGCTTACATCTCGAGG
1 CCGATGCATGTCCCAA-ACATGTCTTACACTAGCTTACATCTCAAGG
* * *
62303121 CTGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAATG
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCT-TACATCTCAAGG
* *
62303167 CCGATGCCATGTCCCAGACATGGCCTTACACT
1 CCGATG-CATGTCCCAAACAT-GTCTTACACT
62303199 GACTCTCATG
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
44 12 0.12
45 11 0.11
46 50 0.50
47 18 0.18
48 9 0.09
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCAAGG
Found at i:62308809 original size:20 final size:18
Alignment explanation
Indices: 62308784--62308820 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
62308774 ATTGCTAAGT
62308784 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
62308804 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
62308821 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:62309432 original size:46 final size:46
Alignment explanation
Indices: 62309378--62309553 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
62309368 TGGTTGAGCA
62309378 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
62309424 TTCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
62309469 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62309517 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62309554 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62309534 original size:93 final size:93
Alignment explanation
Indices: 62309375--62309545 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
62309365 GGATGGTTGA
* **
62309375 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
62309440 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
62309468 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
62309533 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62309546 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62312259 original size:46 final size:45
Alignment explanation
Indices: 62312206--62312366 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 45
62312196 GACGAGGGCT
**
62312206 AGTGTAAGACATGTCTGGGACATGCATCAACCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAG-ATGAGAGCC
* **
62312252 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATGAGAGCC
* * * * *
62312298 AATGTCAA-ACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCT
1 AGTGT-AAGACATGTCTGGGACATGCATCGGCCACAGATGA-GAGCC
62312342 AGTGTAAGACATGTCTGGGACATGC
1 AGTGTAAGACATGTCTGGGACATGC
62312367 GTCAGCACGG
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
43 3 0.03
44 25 0.26
46 65 0.67
47 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAGCC
Found at i:62312403 original size:46 final size:44
Alignment explanation
Indices: 62312203--62312409 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 44
62312193 TGAGACGAGG
* * * * *
62312203 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCAC-AGTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CAT--GT
* * * *
62312249 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T
* * * *
62312294 AGCCAATGTCAA-ACATGTCTGGGACATGCGTCGGCTACGAGATGT
1 -GCTAGTGT-AAGACATGTCTGGGACATGCGTCAGCTACGACATGT
62312339 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGC-ACGGTTACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGT
*
62312385 G-TCAGTGTAAGACCTGTCTGGGACA
1 GCT-AGTGTAAGACATGTCTGGGACA
62312410 CGGCATCGAC
Statistics
Matches: 137, Mismatches: 13, Indels: 22
0.80 0.08 0.13
Matches are distributed among these distances:
43 4 0.03
44 30 0.22
45 4 0.03
46 95 0.69
47 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGT
Found at i:62315201 original size:20 final size:18
Alignment explanation
Indices: 62315176--62315212 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
62315166 ATTGCTAAGT
62315176 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
62315196 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
62315213 TATGAGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:62315836 original size:47 final size:47
Alignment explanation
Indices: 62315767--62315891 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 47
62315757 GGATGGTTGA
* *
62315767 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG-TGA-GATG-TAAC
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTGAGGATGCGAAC
*
62315811 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAAC
1 ---GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTGA-GGATGCGAAC
62315862 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
62315892 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
46 28 0.39
47 32 0.45
48 4 0.06
50 4 0.06
51 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.27
Consensus pattern (47 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTGAGGATGCGAAC
Found at i:62319599 original size:96 final size:96
Alignment explanation
Indices: 62319483--62319897 Score: 352
Period size: 95 Copynumber: 4.4 Consensus size: 96
62319473 AGGGTATAAT
* ** *
62319483 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCA-AGTTGATGCCATGTCCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCATAGCCGATGCCATGTCCCA
*
62319547 GACATGGTCTTACACTGACTATCGAAATCGAG
66 GACATGGTCTTACACTGACTATC-ATATCGAG
62319579 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCATA-CCGATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--AT-CATAGCCGATGCCATGT
62319642 CCCAGACATGGTCTTACACTGAC-AGCTC-TATACGTA-
62 CCCAGACATGGTCTTACACTGACTA--TCATAT-CG-AG
* * *
62319678 -CCGATGCCATGTCCCAGACATGGTCTTACCCT-GACACAT-C-TCATAGCCGATG-CATGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCATCATAGCCGATGCCATGTCCC
* * *
62319738 AAACAT-GTCTTACACTGGCT-TACATCTCGAG
65 AGACATGGTCTTACACTGACTAT-CATATCGAG
* * *
62319769 GCTGAAG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAGT-C-TCA-ATGCCAATGCCATTGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-A-TCCATCATA-GCCGATGCCA-TGT
* * * *
62319829 CTCAGACATGGTCTTACATTGGA-TTTCATAAT-GTG
62 CCCAGACATGGTCTTACACT-GACTATCAT-ATCGAG
*
62319864 GCCGATG-CATGTCCCAGACAT-GTCTTATACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
62319898 ACACAAATGA
Statistics
Matches: 266, Mismatches: 26, Indels: 55
0.77 0.07 0.16
Matches are distributed among these distances:
90 13 0.05
91 20 0.08
92 29 0.11
93 18 0.07
94 16 0.06
95 48 0.18
96 41 0.15
97 2 0.01
98 38 0.14
99 37 0.14
100 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCATAGCCGATGCCATGTCCCA
GACATGGTCTTACACTGACTATCATATCGAG
Found at i:62319699 original size:48 final size:47
Alignment explanation
Indices: 62319484--62319754 Score: 229
Period size: 48 Copynumber: 5.7 Consensus size: 47
62319474 GGGTATAATG
* * * *
62319484 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACAC-TCTAT-ACGTA
* * * *
62319532 -TGATGCCATGTCCGAGACATGGTCTTACACTGACTA-TCGAAATCG-A
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACTCTATA-CGTA
* * *
62319578 GGCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCATA
1 --CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACT--C-TATACGTA
62319630 CCGATGCCATGTCCCAGACATGGTCTTACACTGACAGCTCTATACGTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACA-CTCTATACGTA
*
62319678 CCGATGCCATGTCCCAGACATGGTCTTACCCTGACACATCTCATA-G--
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACAC-TCT-ATACGTA
* *
62319724 CCGATG-CATGTCCTAAACAT-GTCTTACACTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG
62319755 GCTTACATCT
Statistics
Matches: 186, Mismatches: 21, Indels: 36
0.77 0.09 0.15
Matches are distributed among these distances:
44 10 0.05
45 13 0.07
46 10 0.05
47 32 0.17
48 46 0.25
49 35 0.19
50 33 0.18
51 5 0.03
52 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCTATACGTA
Found at i:62319763 original size:46 final size:47
Alignment explanation
Indices: 62319483--62319846 Score: 259
Period size: 46 Copynumber: 7.7 Consensus size: 47
62319473 AGGGTATAAT
*
62319483 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C-ATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCGAT--A
** * * ** *
62319530 GTTGATGCCATGTCCGAGACATGGTCTTACACTGACTATCGAAATCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-A-C-ATCTCGATA
* * *
62319579 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G---GCACATCTCGATA
* *
62319630 -CCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACAGCTCTATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCGATA
* *
62319674 CGTACCGATGCCATGTCCCAGACATGGTCTTACCCTGACACATCTC-ATA
1 -G--CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCGATA
* * *
62319723 GCCGATG-CATGTCCTAAACAT-GTCTTACACTGGCTTACATCTCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--ACATCTCGATA
* * * * *
62319769 GCTGAAG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAGTCTCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-A-TCTCGATA
* *
62319815 GCCAATGCCATTGTCTCAGACATGGTCTTACA
1 GCCGATGCCA-TGTCCCAGACATGGTCTTACA
62319847 TTGGATTTCA
Statistics
Matches: 254, Mismatches: 38, Indels: 48
0.75 0.11 0.14
Matches are distributed among these distances:
44 20 0.08
45 13 0.05
46 51 0.20
47 35 0.14
48 43 0.17
49 42 0.17
50 45 0.18
51 2 0.01
52 2 0.01
53 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCGATA
Found at i:62337913 original size:81 final size:81
Alignment explanation
Indices: 62337771--62338097 Score: 381
Period size: 81 Copynumber: 4.0 Consensus size: 81
62337761 GTTTAGAATA
* * * ** *
62337771 CTTTAGTTTACCAAATTACGAAAATACCCTTGGTTTACATAATTACCAAAATACCAC-TGGTTTG
1 CTTT-GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTTGGTTTG
62337835 TAAAATTACTAAAATACC
64 TAAAATTACTAAAATACC
62337853 CTTTGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 CTTTGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
62337918 AAATTACTAAAATACC
66 AAATTACTAAAATACC
* *
62337934 TTTTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 CTTTGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
*
62337999 AAATTA-TCAAAATACTG
66 AAATTACT-AAAATAC-C
* ** ** ** * ** * ***
62338016 C-TAGTTTGTAAAATTACCAAAATATTCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 CTTTGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
*
62338080 AAATTATTAAAATACC
66 AAATTACTAAAATACC
62338096 CT
1 CT
62338098 CAACTTGTAA
Statistics
Matches: 216, Mismatches: 24, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
80 3 0.01
81 208 0.96
82 5 0.02
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (81 bp):
CTTTGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
AAATTACTAAAATACC
Found at i:62338050 original size:27 final size:26
Alignment explanation
Indices: 62337783--62338122 Score: 302
Period size: 27 Copynumber: 12.6 Consensus size: 26
62337773 TTAGTTTACC
* **
62337783 AAATTACGAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
62337810 TAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACC-CTGGTTTGTA
* * **
62337837 AAATTACTAAAATACCCTTTGTTTACA
1 AAATTACCAAAATACCC-TGGTTTGTA
62337864 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
62337891 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTA
* * * *
62337918 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACC-CTGGTTTGTA
62337945 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
62337972 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTA
* * *
62337999 AAATTATCAAAATACTGCTAGTTTGTA
1 AAATTACCAAAATAC-CCTGGTTTGTA
* ** *
62338026 AAATTACCAAAATATTCCTAATTTGTG
1 AAATTACCAAAATA-CCCTGGTTTGTA
** ***
62338053 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCT-GGTTTGTA
** ***
62338080 AAATTATTAAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCT-GGTTTGTA
*
62338107 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
62338123 ATTGATTTAC
Statistics
Matches: 260, Mismatches: 43, Indels: 20
0.80 0.13 0.06
Matches are distributed among these distances:
26 10 0.04
27 243 0.93
28 7 0.03
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTGTA
Found at i:62338176 original size:27 final size:27
Alignment explanation
Indices: 62338126--62338177 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
62338116 AAGTACCATT
* ***
62338126 GATTTACAGAATTACCGTTTTACCCAC
1 GATTTACAAAATTACCGAAATACCCAC
62338153 GATTTACAAAATTACCGAAATACCC
1 GATTTACAAAATTACCGAAATACCC
62338178 TTGTAGGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (27 bp):
GATTTACAAAATTACCGAAATACCCAC
Found at i:62338198 original size:27 final size:28
Alignment explanation
Indices: 62338168--62338325 Score: 136
Period size: 27 Copynumber: 5.9 Consensus size: 28
62338158 ACAAAATTAC
62338168 CGAAATACCCTTGTAGGGTAGAAAT-CT
1 CGAAATACCCTTGTAGGGTAGAAATACT
*
62338195 CGAAATACCCTTGTAGGGTAGAATTACT
1 CGAAATACCCTTGTAGGGTAGAAATACT
* * * *
62338223 C-AAATACCCCTGTAAGATAGAATTAC-
1 CGAAATACCCTTGTAGGGTAGAAATACT
*
62338249 C-AGAATACCCCTT-TAGGGTAGAATTACT
1 CGA-AATA-CCCTTGTAGGGTAGAAATACT
* * *
62338277 -GAAATACCCCTGTAGGGTGGAATTAC-
1 CGAAATACCCTTGTAGGGTAGAAATACT
* *
62338303 CGAGATA-CCTTGTGGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
62338326 TACCATTTTG
Statistics
Matches: 110, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
25 3 0.03
26 15 0.14
27 84 0.76
28 8 0.07
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (28 bp):
CGAAATACCCTTGTAGGGTAGAAATACT
Found at i:62338220 original size:54 final size:54
Alignment explanation
Indices: 62338162--62338329 Score: 159
Period size: 54 Copynumber: 3.1 Consensus size: 54
62338152 CGATTTACAA
*
62338162 AATTACCGAAATACCCTTGTAGGGTAGAAATCTCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAAATCTCGAAATACCCTTGTAGGGTAG
* * *
62338216 AATTACTC-AAATACCCCTGTAAGATAG-AAT-TACCAGAATACCCCTT-TAGGGTAG
1 AATTAC-CGAAATACCCCTGTAGGGTAGAAATCT-CGA-AATA-CCCTTGTAGGGTAG
* * * * * *
62338270 AATTACTGAAATACCCCTGTAGGGTGGAATTAC-CGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAAAT-CTCGAAATACCCTTGTAGGGTAG
62338323 AATTACC
1 AATTACC
62338330 ATTTTGCCTC
Statistics
Matches: 91, Mismatches: 14, Indels: 19
0.73 0.11 0.15
Matches are distributed among these distances:
52 5 0.05
53 17 0.19
54 59 0.65
55 10 0.11
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAAATCTCGAAATACCCTTGTAGGGTAG
Found at i:62338808 original size:22 final size:21
Alignment explanation
Indices: 62338759--62338820 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
62338749 AAGCCTTCTA
* *
62338759 ATTATGGCTTTGTGTCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
62338780 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
62338802 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
62338821 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:62339009 original size:27 final size:27
Alignment explanation
Indices: 62338979--62339080 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
62338969 ATTCTGTTAA
* *
62338979 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
62339006 GTGGCTATGCTACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
62339033 GTGGCTCTGCCAGAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * * *
62339060 ATGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
62339081 ATAACTAAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.13
27 47 0.76
28 7 0.11
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:62339255 original size:6 final size:6
Alignment explanation
Indices: 62339217--62339336 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
62339207 TTGTATTTAC
* * *
62339217 ATTCTG ATTTTTG ATTCTG -TTCCCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
62339267 -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
62339317 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
62339337 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 65 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:62339263 original size:31 final size:31
Alignment explanation
Indices: 62339217--62339332 Score: 144
Period size: 31 Copynumber: 3.7 Consensus size: 31
62339207 TTGTATTTAC
*
62339217 ATTCTGATTTTTGATTCTGTTCCCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTCCCTGATACTG
* *
62339249 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTCCCTGATACTG
* * *
62339280 ATTCTGATTCTAATTCTG-TCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTC-CCTGATACTG
62339311 ATTCTGATTCTGATTCTAGTTC
1 ATTCTGATTCTGATTCT-GTTC
62339333 TGATAATGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 1 0.01
31 63 0.85
32 8 0.11
33 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTCCCTGATACTG
Found at i:62341300 original size:27 final size:27
Alignment explanation
Indices: 62341275--62341509 Score: 290
Period size: 27 Copynumber: 8.7 Consensus size: 27
62341265 TTACTTTACC
*
62341275 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
62341302 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
62341329 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
62341356 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
62341383 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
62341410 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
62341437 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
** * * *
62341464 AAATTTTCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
62341491 AAATTACCAAAATATCCCT
1 AAATTACCAAAATA-CCCT
62341510 AATTTGTGAA
Statistics
Matches: 179, Mismatches: 28, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
27 176 0.98
28 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:62341412 original size:81 final size:81
Alignment explanation
Indices: 62341275--62341587 Score: 335
Period size: 81 Copynumber: 3.9 Consensus size: 81
62341265 TTACTTTACC
** * * *
62341275 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
*
62341340 ATACCCTTTGTTTATA
66 ATACCCTTAGTTTATA
* * ** * *
62341356 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
*
62341421 ATACCCTTAGTTTGTA
66 ATACCCTTAGTTTATA
*
62341437 AAATTACCAAAATACCCTTGGTTTGTAAAATT-TTCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACT-AAAATACCCCTAGTTTGTAAAATTACCAA
* * *
62341501 AATATCCC-TAATTTGTG
65 AATA-CCCTTAGTTTATA
** *** * * * *
62341518 AAATTACTGAAATACCCTTGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAG-TTTGTAAAATTACCAA
*
62341582 AGTACC
65 AATACC
62341588 ATTGATTTAC
Statistics
Matches: 198, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
80 8 0.04
81 185 0.93
82 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCTTAGTTTATA
Found at i:62341510 original size:27 final size:26
Alignment explanation
Indices: 62341275--62341587 Score: 284
Period size: 27 Copynumber: 11.6 Consensus size: 26
62341265 TTACTTTACC
* **
62341275 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-TAGTTTGTA
*
62341302 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
* * *
62341329 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCC-TAGTTTGTA
62341356 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
* * * *
62341383 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACC-CTAGTTTGTA
62341410 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCC-TAGTTTGTA
*
62341437 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TAGTTTGTA
**
62341464 AAATTTTCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
* *
62341491 AAATTACCAAAATATCCCTAATTTGTG
1 AAATTACCAAAATA-CCCTAGTTTGTA
** * **
62341518 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCTAG-TTTGTA
*** * *
62341545 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTAG-TTTGTA
*
62341572 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
62341588 ATTGATTTAC
Statistics
Matches: 240, Mismatches: 39, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
26 9 0.04
27 222 0.93
28 9 0.04
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (26 bp):
AAATTACCAAAATACCCTAGTTTGTA
Found at i:62341534 original size:54 final size:54
Alignment explanation
Indices: 62341275--62341509 Score: 362
Period size: 54 Copynumber: 4.3 Consensus size: 54
62341265 TTACTTTACC
* * *
62341275 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
*
62341329 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * *
62341383 AAATTACTAAAATACCTTTTGTTTATAAAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * **
62341437 AAATTACCAAAATACCCTTGGTTTGTAAAATTTTCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
62341491 AAATTACCAAAATATCCCT
1 AAATTACCAAAATA-CCCT
62341510 AATTTGTGAA
Statistics
Matches: 167, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 163 0.98
55 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:62341792 original size:26 final size:27
Alignment explanation
Indices: 62341627--62341793 Score: 164
Period size: 27 Copynumber: 6.2 Consensus size: 27
62341617 CGATTTACAA
62341627 AATTACCGAAATA-CCCTTGTAGGGTAG
1 AATTACCGAAATATCCC-TGTAGGGTAG
* *
62341654 AAAT-CTCGAAATACCCCTGTAGGGTAG
1 AATTAC-CGAAATATCCCTGTAGGGTAG
* *
62341681 AATTACTC-AAATACCCCTGTAAGGTAG
1 AATTAC-CGAAATATCCCTGTAGGGTAG
* *
62341708 AATTACC-AGAATACCCCTTTAGGGTAG
1 AATTACCGA-AATATCCCTGTAGGGTAG
*
62341735 AATTACCGAAATATCCCTGTAGGGTGG
1 AATTACCGAAATATCCCTGTAGGGTAG
* * * *
62341762 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATATCCCTGTAGGGTAG
62341788 AATTAC
1 AATTAC
62341794 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 13, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
26 18 0.15
27 97 0.80
28 7 0.06
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATATCCCTGTAGGGTAG
Found at i:62349269 original size:18 final size:18
Alignment explanation
Indices: 62349242--62349281 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
62349232 AACGACACAT
*
62349242 TTCACTCATTCCTCAGGA
1 TTCACACATTCCTCAGGA
62349260 TTCACACATTCCTCAGGA
1 TTCACACATTCCTCAGGA
62349278 TTCA
1 TTCA
62349282 GAGACATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.25, C:0.33, G:0.10, T:0.33
Consensus pattern (18 bp):
TTCACACATTCCTCAGGA
Found at i:62350030 original size:13 final size:13
Alignment explanation
Indices: 62350012--62350036 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62350002 CCGAAACTAG
62350012 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
62350025 AAAGAAAAAAAA
1 AAAGAAAAAAAA
62350037 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:62351210 original size:39 final size:40
Alignment explanation
Indices: 62351115--62351337 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
62351105 TTGAATGCTG
*
62351115 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
62351153 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
62351194 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
62351233 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
62351272 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
62351311 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62351338 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62351301 original size:79 final size:81
Alignment explanation
Indices: 62351115--62351337 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
62351105 TTGAATGCTG
* * *
62351115 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
62351177 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
62351194 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
62351255 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
62351272 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
62351336 TG
66 TG
62351338 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:62351359 original size:79 final size:79
Alignment explanation
Indices: 62351115--62351370 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
62351105 TTGAATGCTG
* * * *
62351115 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
62351176 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
62351194 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
62351258 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
62351272 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
62351335 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
62351352 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62351371 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:62367774 original size:39 final size:40
Alignment explanation
Indices: 62367730--62367974 Score: 245
Period size: 39 Copynumber: 6.2 Consensus size: 40
62367720 CCTTCAGAGT
*
62367730 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
* ** *
62367769 TTAGCCCGGTTATAGTGACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
*** *
62367809 TTAGCCCGG-TATAATAACTAGCACAAATGCCTTCGGCAC
1 TTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
** * *
62367848 TTAGCCC-GATATA-ATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGCCA-CTAGCACAAATGCCTTCGGGAC
* * *
62367887 TTAGCCCGGATATAG-TAGCTCGCACGAATGCCTTC-GGAC
1 TTAGCCCGGATATAGCCA-CTAGCACAAATGCCTTCGGGAC
*
62367926 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGCCACTAGCACAAATGCCT-TCGGGAC
62367966 TTAGCCCGG
1 TTAGCCCGG
62367975 TTATCATCCG
Statistics
Matches: 177, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
38 5 0.03
39 95 0.54
40 77 0.44
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGAC
Found at i:62367851 original size:79 final size:76
Alignment explanation
Indices: 62367746--62367975 Score: 255
Period size: 79 Copynumber: 2.9 Consensus size: 76
62367736 GGATATAGCC
* *
62367746 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTTGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTC-GGACTTAGCCCGG-TATAGT-ACTAGCACAAATGCCTTCGGGACTT
62367811 AGCCCGGTATAATA
63 AGCCCGGTATAATA
* * * *
62367825 ACTAGCACAAATGCCTTCGGCACTTAGCCCGATATAATAGCTCGCACAAACGCCTTCGGGACTTA
1 ACTAGCACAAATGCCTTCGG-ACTTAGCCCGGTATAGTA-CTAGCACAAATGCCTTCGGGACTTA
*
62367890 GCCCGGATATAGTA
64 GCCCGG-TATAATA
* * * * * *
62367904 GCTCGCACGAATGCCTTCGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTT
1 ACTAGCACAAATGCCTTCGGACTTAGCCCGGTA-TAG-TACTAGCACAAATGCCT-TCGGGACTT
62367968 AGCCCGGT
63 AGCCCGGT
62367976 TATCATCCGA
Statistics
Matches: 129, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 50 0.39
79 77 0.60
80 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (76 bp):
ACTAGCACAAATGCCTTCGGACTTAGCCCGGTATAGTACTAGCACAAATGCCTTCGGGACTTAGC
CCGGTATAATA
Found at i:62367947 original size:118 final size:118
Alignment explanation
Indices: 62367753--62367973 Score: 304
Period size: 118 Copynumber: 1.9 Consensus size: 118
62367743 GCCACTAGCT
* * *
62367753 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAACGCCTTCGGGACTTAGCCCGGATATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
62367818 TATAATAACTAGCACAAATGC-CTTCGGCACTTAGCCCGATATAATAGCTCGCA
66 AATAACAACTAGCACAAATGCTC-TCGGCACTTAGCCCGATATAATAGCTCGCA
*
62367871 CAAACGCCTTCGGGACTTAGCCCGGATATAGT-AGCTCGCACGAATGCCTTC-GGACTTAGCCCG
1 CAAACGCCTTCGGGACTTAGCCCGGATATAGTGA-CTCGCACAAATGCCTTCGGGACTTAGCCCG
* * * *
62367934 GAATTAGCCACTAGCTCAAATGCTCTCGGGACTTAGCCCG
65 GAA-TAACAACTAGCACAAATGCTCTCGGCACTTAGCCCG
62367974 GTTATCATCC
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
117 15 0.17
118 74 0.82
119 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (118 bp):
CAAACGCCTTCGGGACTTAGCCCGGATATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATAACAACTAGCACAAATGCTCTCGGCACTTAGCCCGATATAATAGCTCGCA
Found at i:62371833 original size:50 final size:50
Alignment explanation
Indices: 62371774--62372041 Score: 234
Period size: 50 Copynumber: 5.5 Consensus size: 50
62371764 TGTCAAACAT
* *
62371774 GGTCTTACATT-GACTCTCGTATATCGAG-GCTGATGCCATGTCCTAGACAC
1 GGTCTTACATTAG-CTCTCATATATCG-GTGCTGATGCCATGTCCCAGACAC
* *
62371824 GGTCTTACATTAGCTCTCATCTATCGGTGCTGATGCCATGTCCCAGACAT
1 GGTCTTACATTAGCTCTCATATATCGGTGCTGATGCCATGTCCCAGACAC
* * ** * *
62371874 GGTCTTACACTAGCTCTCATCTATCGGTGCCAATGCCATATCCCAGACAT
1 GGTCTTACATTAGCTCTCATATATCGGTGCTGATGCCATGTCCCAGACAC
** * * * *
62371924 GGTCTTAC---A-CTGACATATATCAAGT-C-GATGCCATGCCCCAAACAT
1 GGTCTTACATTAGCTCTCATATATC-GGTGCTGATGCCATGTCCCAGACAC
* * * *
62371969 AGTCTTACAGTAGCTCTCATATTTCGAG-G-TCGATGCCATGTCCCA-ACAT
1 GGTCTTACATTAGCTCTCATATATCG-GTGCT-GATGCCATGTCCCAGACAC
62372018 GGTCTTACATTAGCTCTCATATAT
1 GGTCTTACATTAGCTCTCATATAT
62372042 ACCTACCATC
Statistics
Matches: 182, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
45 22 0.12
46 10 0.05
47 3 0.02
48 1 0.01
49 36 0.20
50 109 0.60
51 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (50 bp):
GGTCTTACATTAGCTCTCATATATCGGTGCTGATGCCATGTCCCAGACAC
Found at i:62372005 original size:95 final size:94
Alignment explanation
Indices: 62371855--62372026 Score: 238
Period size: 95 Copynumber: 1.8 Consensus size: 94
62371845 TATCGGTGCT
* * * *
62371855 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCGGTGCCAATGCCATATCCCAG
1 GATGCCATGCCCCAAACATAGTCTTACACTAGCTCTCATATATCGGTGCCAATGCCATATCCCA-
62371920 ACATGGTCTTACACTGACATATATCAAGTC
65 ACATGGTCTTACACTGACATATATCAAGTC
* * * * *
62371950 GATGCCATGCCCCAAACATAGTCTTACAGTAGCTCTCATATTTCGAG-GTCGATGCCATGTCCCA
1 GATGCCATGCCCCAAACATAGTCTTACACTAGCTCTCATATATCG-GTGCCAATGCCATATCCCA
62372014 ACATGGTCTTACA
65 ACATGGTCTTACA
62372027 TTAGCTCTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
94 13 0.19
95 53 0.79
96 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (94 bp):
GATGCCATGCCCCAAACATAGTCTTACACTAGCTCTCATATATCGGTGCCAATGCCATATCCCAA
CATGGTCTTACACTGACATATATCAAGTC
Found at i:62372452 original size:55 final size:55
Alignment explanation
Indices: 62372379--62372485 Score: 169
Period size: 55 Copynumber: 1.9 Consensus size: 55
62372369 TGCAACACTG
*
62372379 ACTTTAAAACACAACCATGACATACGCCCGTGTGGCCTACCCATGTACTAAATTA
1 ACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTACCCATGTACTAAATTA
* ** *
62372434 ACTTTAAAATACGGCCATGACACACGCTCGTGTGGCCTACCCATGTACTAAA
1 ACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTACCCATGTACTAAA
62372486 CTGACTTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (55 bp):
ACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTACCCATGTACTAAATTA
Found at i:62373406 original size:44 final size:47
Alignment explanation
Indices: 62373357--62373522 Score: 164
Period size: 48 Copynumber: 3.6 Consensus size: 47
62373347 TATACGTGCT
* * *
62373357 GATGCATGTCCCGGACATGTCTTACACTAGC-ATGA-C-TCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCATC-AAGGCC
* *
62373401 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCATCAAGGCC
* * ** *
62373448 GATGCCATGTCCCAGACATGTCTTACACTGGC-ACTCATAAT-GTGGTC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTA-TCATCATCAAGGCC
*
62373495 GATGCATGTCCCAGACACGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
62373523 GGCATACAAG
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
44 28 0.27
45 3 0.03
46 25 0.24
47 17 0.16
48 32 0.30
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCATCAAGGCC
Found at i:62373517 original size:46 final size:46
Alignment explanation
Indices: 62373398--62373527 Score: 181
Period size: 48 Copynumber: 2.8 Consensus size: 46
62373388 ATGACTCTTA
*
62373398 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCAAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC-ATCATAATCAAG
* **
62373445 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACACGTCTTACACTGGCA-TCATAATCAAG
*
62373492 GTCGATGCATGTCCCAGACACGTCTTACACTGGCAT
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCAT
62373528 ACAAGAAATC
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
45 1 0.01
46 27 0.36
47 15 0.20
48 32 0.43
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCATCATAATCAAG
Found at i:62377930 original size:3 final size:3
Alignment explanation
Indices: 62377922--62377952 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
62377912 TTGCAATGCT
62377922 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
62377953 ATGGCTACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:62378074 original size:29 final size:27
Alignment explanation
Indices: 62378041--62378139 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 27
62378031 CAATTGAATT
*
62378041 TAAATTTTAAAATTCGAAAACATAGAGAC
1 TAAA-TTTAAAA-TCAAAAACATAGAGAC
*
62378070 TAAATTCTTTAAAAT-AAAAAGATAGAGAC
1 TAAA---TTTAAAATCAAAAACATAGAGAC
**
62378099 TAAATTTAAAATCTATGAACATAGAGAC
1 TAAATTTAAAATC-AAAAACATAGAGAC
62378127 TAAATTTAAAATC
1 TAAATTTAAAATC
62378140 TACGAACAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
26 8 0.13
28 24 0.40
29 20 0.33
30 1 0.02
31 7 0.12
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAATTTAAAATCAAAAACATAGAGAC
Found at i:62378131 original size:28 final size:28
Alignment explanation
Indices: 62378091--62378147 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
62378081 AAATAAAAAG
*
62378091 ATAGAGACTAAATTTAAAATCTATGAAC
1 ATAGAGACTAAATTTAAAATCTACGAAC
62378119 ATAGAGACTAAATTTAAAATCTACGAAC
1 ATAGAGACTAAATTTAAAATCTACGAAC
62378147 A
1 A
62378148 ACACTAAGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (28 bp):
ATAGAGACTAAATTTAAAATCTACGAAC
Found at i:62378939 original size:27 final size:27
Alignment explanation
Indices: 62378908--62378977 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
62378898 TAAAATCTAA
*
62378908 TCATTTTAAAAATAAATTGGGACAATT
1 TCATTTTAAAAATAAATTAGGACAATT
* * *
62378935 TCATTTTAAAATTAAGTTAGGATAATT
1 TCATTTTAAAAATAAATTAGGACAATT
**
62378962 TTTTATTTAAAAATAA
1 TCAT-TTTAAAAATAA
62378978 GGCAACTAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
27 25 0.71
28 10 0.29
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (27 bp):
TCATTTTAAAAATAAATTAGGACAATT
Found at i:62381950 original size:60 final size:60
Alignment explanation
Indices: 62381836--62381998 Score: 179
Period size: 60 Copynumber: 2.7 Consensus size: 60
62381826 ACTAGGCCTA
* *
62381836 AGCCCTATTCAGAAATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCAT
1 AGCCCTATT-AGAAATCAGAGTAT-ATTGGGCC-TAGCCCATATCAATATCAATCTGGGCCAT
* * *
62381898 AGCCCT-TTAGAACATCAGAGTATATTGGGCCTAGCCCATATCAGTGTCAATCTGGGCCGT
1 AGCCCTATTAGAA-ATCAGAGTATATTGGGCCTAGCCCATATCAATATCAATCTGGGCCAT
* * * *
62381958 AGCCCTATTACAAGTC-GAGATATGTTGGGCGTAGCCCATAT
1 AGCCCTATTAGAAATCAGAG-TATATTGGGCCTAGCCCATAT
62381999 TAACATAGTT
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
59 3 0.03
60 56 0.64
61 22 0.25
62 7 0.08
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (60 bp):
AGCCCTATTAGAAATCAGAGTATATTGGGCCTAGCCCATATCAATATCAATCTGGGCCAT
Found at i:62384886 original size:34 final size:35
Alignment explanation
Indices: 62384815--62384886 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
62384805 CGTATCCTAG
*
62384815 CTATAGTCTCAGTCTTCTAAAGTTTTCAATTTTCC
1 CTATAGTCTCAGTCTTCTAAAGTTTTCAATTTACC
* * *
62384850 CTATTGTCTCAGT-TTCTACAG-TTTCAGTATTACC
1 CTATAGTCTCAGTCTTCTAAAGTTTTCAAT-TTACC
62384884 CTA
1 CTA
62384887 ACTACAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 14 0.44
35 12 0.38
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (35 bp):
CTATAGTCTCAGTCTTCTAAAGTTTTCAATTTACC
Found at i:62386014 original size:61 final size:63
Alignment explanation
Indices: 62385881--62386014 Score: 161
Period size: 60 Copynumber: 2.2 Consensus size: 63
62385871 ACTGGGCCTA
* *
62385881 AGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCAT
* * * * *
62385943 AGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATCAGTGTCAATCTAGGCCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCAT
62386003 AGCCCTATTACA
1 AGCCCTATTACA
62386015 AGTCGAGATA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 31 0.51
61 22 0.36
62 8 0.13
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCAT
Found at i:62386061 original size:20 final size:20
Alignment explanation
Indices: 62386036--62386081 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
62386026 GTTGGGCGTT
62386036 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
62386056 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
62386075 GCCCATA
1 GCCCATA
62386082 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:62386590 original size:19 final size:19
Alignment explanation
Indices: 62386566--62386610 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
62386556 ATTGGGCTCG
62386566 TTGGCCCATTAACCCGATT
1 TTGGCCCATTAACCCGATT
62386585 TTGGCCCATTAACCCGATT
1 TTGGCCCATTAACCCGATT
62386604 TTGGCCC
1 TTGGCCC
62386611 GTTGGCCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (19 bp):
TTGGCCCATTAACCCGATT
Found at i:62386615 original size:27 final size:27
Alignment explanation
Indices: 62386585--62386637 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
62386575 TAACCCGATT
*
62386585 TTGGCCCATTAACCCGATTTTGGCCCG
1 TTGGCCCATTAACCCGATTTCGGCCCG
*
62386612 TTGGCCCATTAACCCTATTTCGGCCC
1 TTGGCCCATTAACCCGATTTCGGCCC
62386638 ATTAAGCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.15, C:0.36, G:0.19, T:0.30
Consensus pattern (27 bp):
TTGGCCCATTAACCCGATTTCGGCCCG
Found at i:62390714 original size:12 final size:12
Alignment explanation
Indices: 62390697--62390726 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
62390687 TGAGATACAC
62390697 GCCCGTGTCTCT
1 GCCCGTGTCTCT
62390709 GCCCGTGTCTCT
1 GCCCGTGTCTCT
62390721 GCCCGT
1 GCCCGT
62390727 ATGCTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.43, G:0.27, T:0.30
Consensus pattern (12 bp):
GCCCGTGTCTCT
Found at i:62396914 original size:26 final size:27
Alignment explanation
Indices: 62396860--62396914 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
62396850 CTTAAAAGTT
62396860 GAATTATAAATTGAAATAAAATAAAGG
1 GAATTATAAATTGAAATAAAATAAAGG
*
62396887 GAATTGTAAATTGAAAT-AAATAAAGG
1 GAATTATAAATTGAAATAAAATAAAGG
62396913 GA
1 GA
62396915 CTAAATTAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.25
Consensus pattern (27 bp):
GAATTATAAATTGAAATAAAATAAAGG
Found at i:62398199 original size:43 final size:43
Alignment explanation
Indices: 62398146--62398231 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
62398136 TATGTGATTG
62398146 ATATTAAAATGG-AAATGATAAGAAATGAATATGAGATGAGAAA
1 ATATTAAAATGGCAAAT-ATAAGAAATGAATATGAGATGAGAAA
* * *
62398189 ATATTGAAATGGCAAATATGAGAAATGATTATGAGATGAGAAA
1 ATATTAAAATGGCAAATATAAGAAATGAATATGAGATGAGAAA
62398232 TGAAATATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 35 0.90
44 4 0.10
ACGTcount: A:0.52, C:0.01, G:0.22, T:0.24
Consensus pattern (43 bp):
ATATTAAAATGGCAAATATAAGAAATGAATATGAGATGAGAAA
Found at i:62399303 original size:116 final size:116
Alignment explanation
Indices: 62399096--62399338 Score: 339
Period size: 116 Copynumber: 2.1 Consensus size: 116
62399086 GGTGCACTCG
* * * *
62399096 GCCTGGCCACATAGG-CATGTGTCACACACGAGTAGCACACATAGGCGTGTGACCCAACTCAGAG
1 GCCTGGCCACATGGGTGA-GTGTCACACACGAGCAACACACATAGGCGTGTGACCCAACTCAGAG
62399160 AGTTACATGGCCTGGCCACACGAGCGTGTGTCTCAACT-GTGTGAGGCACACA
65 AGTTACATGGCCTGGCCACACGAGCGTGTGTCTC-ACTAGTGTGAGGCACACA
* * *
62399212 GCTTGGCCACATGGGTGAGTGTCACACACGGGCAACACACAT-GGACGTGTGACCCAAGTCAGAG
1 GCCTGGCCACATGGGTGAGTGTCACACACGAGCAACACACATAGG-CGTGTGACCCAACTCAGAG
* * * *
62399276 AGTTACATGGCCTGGCCACACGGGCGTGTGTCTCAGTAGTGTGAGGCATACT
65 AGTTACATGGCCTGGCCACACGAGCGTGTGTCTCACTAGTGTGAGGCACACA
62399328 GCCTGGCCACA
1 GCCTGGCCACA
62399339 CGGGCATGTG
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
115 4 0.04
116 107 0.96
117 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.19
Consensus pattern (116 bp):
GCCTGGCCACATGGGTGAGTGTCACACACGAGCAACACACATAGGCGTGTGACCCAACTCAGAGA
GTTACATGGCCTGGCCACACGAGCGTGTGTCTCACTAGTGTGAGGCACACA
Found at i:62401690 original size:47 final size:47
Alignment explanation
Indices: 62401564--62401693 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 47
62401554 TCAATTGATA
* *
62401564 AGTACCTATACCATGGCCCATAGCCAAATCAACGTAACTGATCCTAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAAATGATCCTAG
* * * * * *
62401611 AGTACCTATAACATGTCCCGTAGCAAAATCAAGGTAAATTATCCTGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAAATGATCCTAG
62401658 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
62401694 TCAGTCGCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAAATGATCCTAG
Found at i:62410857 original size:42 final size:43
Alignment explanation
Indices: 62410746--62410910 Score: 183
Period size: 43 Copynumber: 3.8 Consensus size: 43
62410736 AATATATACA
* * *
62410746 ATGCCAACGTCCCAGACTTGGTCTTACATGTAATCA-AACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAGAA-ATCG
* * *
62410789 ATGCC-ACTGTCTCAGACAGGGTCTTACACGAAATCAGATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAGAAATCG
* * *
62410831 AAGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAGAAATCG
**
62410875 ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
62410911 CATATTAGAT
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 28 0.28
43 43 0.43
44 29 0.29
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAGAAATCG
Found at i:62410907 original size:86 final size:85
Alignment explanation
Indices: 62410748--62410910 Score: 215
Period size: 86 Copynumber: 1.9 Consensus size: 85
62410738 TATATACAAT
* * * *
62410748 GCCAACGTCCCAGACTTGGTCTTACATGTAATCAAACATCGATGCCACTGTCTCAGACAGGGTCT
1 GCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCACTGTCCCAGACAGGGTCT
62410813 TACACGAAATCAGATACGAA
66 TACACGAAATCAGATACGAA
* *
62410833 GCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAA-ATCGATGCCAAC-GTCCCAGA-TGTG
1 GCCAACGTCCCAGACATGGTCTTACACGT-AAACA-AACATCGATGCC-ACTGTCCCAGACAG-G
62410895 GTCTTACACGAAATCA
62 GTCTTACACGAAATCA
62410911 CATATTAGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 27 0.40
86 37 0.54
87 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (85 bp):
GCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCACTGTCCCAGACAGGGTCT
TACACGAAATCAGATACGAA
Found at i:62413535 original size:48 final size:47
Alignment explanation
Indices: 62413456--62413576 Score: 170
Period size: 48 Copynumber: 2.5 Consensus size: 47
62413446 CCAGATATTA
* *
62413456 TCTTACATGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
1 TCTTACATGGATCACAGATCGATGCCAATGCCATGTCCCAAACATGG
* *
62413503 TCTTACATAGGATCATAGGTCGATGCCAATGCCATGTCCCAAACATGG
1 TCTTACAT-GGATCACAGATCGATGCCAATGCCATGTCCCAAACATGG
* *
62413551 TCTTACGTGGGATCACATATCGATGC
1 TCTTACAT-GGATCACAGATCGATGC
62413577 AGACAGCCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
47 8 0.12
48 56 0.88
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (47 bp):
TCTTACATGGATCACAGATCGATGCCAATGCCATGTCCCAAACATGG
Found at i:62413644 original size:48 final size:47
Alignment explanation
Indices: 62413456--62413648 Score: 150
Period size: 48 Copynumber: 4.1 Consensus size: 47
62413446 CCAGATATTA
* *
62413456 TCTTACATG-GATCACATATCGATGCCAATGCCATGTCCCAGACATGG
1 TCTTACA-GAGATTACATATCGATGCCAAAGCCATGTCCCAGACATGG
* * *
62413503 TCTTACATAGGA-T-CATAGGTCGATGCCAATGCCATGTCCCAAACATGG
1 TCTTACAGA-GATTACATA--TCGATGCCAAAGCCATGTCCCAGACATGG
* * * * * **
62413551 TCTTACGTGGGATCACATATCGATG-C--AGACA-G-CCTAGTTATGG
1 TCTTAC-AGAGATTACATATCGATGCCAAAGCCATGTCCCAGACATGG
* *
62413594 TCTTACACGAAATTACATATCAATGCCAAAGCCATGTCCCAGACATGG
1 TCTTACA-GAGATTACATATCGATGCCAAAGCCATGTCCCAGACATGG
62413642 TCTTACA
1 TCTTACA
62413649 TGGGATCGAC
Statistics
Matches: 111, Mismatches: 22, Indels: 25
0.70 0.14 0.16
Matches are distributed among these distances:
43 26 0.23
44 2 0.02
45 3 0.03
46 8 0.07
47 9 0.08
48 59 0.53
50 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (47 bp):
TCTTACAGAGATTACATATCGATGCCAAAGCCATGTCCCAGACATGG
Found at i:62420698 original size:27 final size:27
Alignment explanation
Indices: 62420667--62420844 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62420657 TAAATTGTAC
62420667 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62420694 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62420720 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62420748 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62420776 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62420803 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62420830 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62420845 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62420781 original size:82 final size:81
Alignment explanation
Indices: 62420668--62420823 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62420658 AAATTGTACA
* *
62420668 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62420732 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62420749 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62420814 TGCGAGTTGA
65 TGCGAATTGA
62420824 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62420835 original size:82 final size:81
Alignment explanation
Indices: 62420664--62420844 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62420654 GATTAAATTG
* *
62420664 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62420729 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62420745 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62420809 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62420827 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62420845 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62424027 original size:40 final size:40
Alignment explanation
Indices: 62423934--62424158 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
62423924 GCTCCTCGTT
* * * *
62423934 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
62423974 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
62424013 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
62424053 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * * *
62424093 CAAATGCCTTC-GGATCTTAGTCCGGGTATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
62424134 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
62424159 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 104 0.66
41 15 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:62426709 original size:3 final size:3
Alignment explanation
Indices: 62426701--62426737 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
62426691 ATTATATGTT
* *
62426701 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTT ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
62426738 AAGAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:62426802 original size:17 final size:17
Alignment explanation
Indices: 62426769--62426802 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
62426759 GGATGCATGC
*
62426769 AAATTAAACAAATAAAA
1 AAATTAAACAAAGAAAA
*
62426786 AAATTAAAGAAAGAAAA
1 AAATTAAACAAAGAAAA
62426803 GGATAAGAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (17 bp):
AAATTAAACAAAGAAAA
Found at i:62428002 original size:43 final size:43
Alignment explanation
Indices: 62427935--62428020 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
62427925 TATGTGATTG
62427935 ATATTGAAATGACAAAGATAAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGACAAAGATAAGAAATGAATATGAGATGAGAAA
* * *
62427978 ATATTGAAATGGA-AAATATGAGAAATGATTATGAGATGAGAAA
1 ATATTGAAAT-GACAAAGATAAGAAATGAATATGAGATGAGAAA
62428021 TGAAATATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 37 0.95
44 2 0.05
ACGTcount: A:0.53, C:0.01, G:0.22, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGACAAAGATAAGAAATGAATATGAGATGAGAAA
Found at i:62428004 original size:16 final size:17
Alignment explanation
Indices: 62427962--62428005 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
62427952 ATAAGAAATG
62427962 AATATGAG--ATGAGAA
1 AATATGAGAAATGAGAA
*
62427977 AATAT-TGAAATG-GAA
1 AATATGAGAAATGAGAA
62427992 AATATGAGAAATGA
1 AATATGAGAAATGA
62428006 TTATGAGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 1 0.04
15 13 0.57
16 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.23
Consensus pattern (17 bp):
AATATGAGAAATGAGAA
Found at i:62430397 original size:19 final size:19
Alignment explanation
Indices: 62430373--62430447 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
62430363 CAATGCACAC
62430373 GCCCGTGTGCTTGGGACAT
1 GCCCGTGTGCTTGGGACAT
*
62430392 GCCCGTGTGCTTGGGACAC
1 GCCCGTGTGCTTGGGACAT
62430411 GCCCGTGTGCTTGGGACAT
1 GCCCGTGTGCTTGGGACAT
*
62430430 GCCCATGTGCTTGGGACA
1 GCCCGTGTGCTTGGGACA
62430448 CGCCTGTGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 53 1.00
ACGTcount: A:0.12, C:0.28, G:0.36, T:0.24
Consensus pattern (19 bp):
GCCCGTGTGCTTGGGACAT
Found at i:62430420 original size:38 final size:38
Alignment explanation
Indices: 62430369--62430456 Score: 158
Period size: 38 Copynumber: 2.3 Consensus size: 38
62430359 GAGGCAATGC
*
62430369 ACACGCCCGTGTGCTTGGGACATGCCCGTGTGCTTGGG
1 ACACGCCCGTGTGCTTGGGACATGCCCATGTGCTTGGG
62430407 ACACGCCCGTGTGCTTGGGACATGCCCATGTGCTTGGG
1 ACACGCCCGTGTGCTTGGGACATGCCCATGTGCTTGGG
*
62430445 ACACGCCTGTGT
1 ACACGCCCGTGT
62430457 CCCTTACCCG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.12, C:0.30, G:0.34, T:0.24
Consensus pattern (38 bp):
ACACGCCCGTGTGCTTGGGACATGCCCATGTGCTTGGG
Found at i:62439614 original size:25 final size:25
Alignment explanation
Indices: 62439580--62439630 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
62439570 GGATGTTACA
*
62439580 CCTCCGAGCTGAATAACGATAAGCT
1 CCTCCAAGCTGAATAACGATAAGCT
*
62439605 CCTCCAAGCTGAATAACGGTAAGCT
1 CCTCCAAGCTGAATAACGATAAGCT
62439630 C
1 C
62439631 ATAGGAGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (25 bp):
CCTCCAAGCTGAATAACGATAAGCT
Found at i:62439639 original size:25 final size:25
Alignment explanation
Indices: 62439585--62439664 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
62439575 TTACACCTCC
* * *
62439585 GAGCTGAATAACGATAAGCTCCTCCA
1 GAGCTGAATAACGGTAAGCTCAT-AA
*
62439611 -AGCTGAATAACGGTAAGCTCATAG
1 GAGCTGAATAACGGTAAGCTCATAA
**
62439635 GAGCT-AAGTATTGGTAAGCTCATAA
1 GAGCTGAA-TAACGGTAAGCTCATAA
62439660 GAGCT
1 GAGCT
62439665 AAAATCAGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
24 2 0.04
25 43 0.96
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCATAA
Found at i:62439969 original size:15 final size:16
Alignment explanation
Indices: 62439949--62439978 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62439939 CGAATGGATT
62439949 TAACTCA-ATTCAATA
1 TAACTCACATTCAATA
62439964 TAACTCACATTCAAT
1 TAACTCACATTCAAT
62439979 TTATTCCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.33
Consensus pattern (16 bp):
TAACTCACATTCAATA
Found at i:62444178 original size:39 final size:40
Alignment explanation
Indices: 62444083--62444265 Score: 236
Period size: 39 Copynumber: 4.7 Consensus size: 40
62444073 TTGAATGATA
*
62444083 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
62444121 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
62444162 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
62444201 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
62444240 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62444266 AACGAGGAGC
Statistics
Matches: 131, Mismatches: 6, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
39 92 0.70
40 27 0.21
41 11 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62447535 original size:39 final size:40
Alignment explanation
Indices: 62447490--62447661 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
62447480 GCTCCTCGTT
* * *
62447490 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
62447530 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
62447569 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
62447609 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
62447649 CAAATGCCTTCGG
1 CAAATGCCTTCGG
62447662 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:62447590 original size:40 final size:39
Alignment explanation
Indices: 62447492--62447714 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
62447482 TCCTCGTTCA
* * * *
62447492 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
62447531 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
62447570 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
62447610 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
62447650 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
62447691 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62447715 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:62447674 original size:80 final size:79
Alignment explanation
Indices: 62447490--62447714 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
62447480 GCTCCTCGTT
* * * * *
62447490 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
62447554 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
62447569 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
62447634 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
62447649 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
62447713 GA
63 GA
62447715 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:62447723 original size:41 final size:41
Alignment explanation
Indices: 62447646--62447723 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
62447636 TTTGTATCTC
* * *
62447646 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
62447687 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
62447724 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:62463043 original size:27 final size:27
Alignment explanation
Indices: 62462987--62463043 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
62462977 CCCTTGATCA
* *
62462987 ATAAAATGACGATTATGCCCCTATGTG
1 ATAAAATGACGATTATGCCCCAATGAG
* **
62463014 ATAAAATGACTATTATGCCGGAATGAG
1 ATAAAATGACGATTATGCCCCAATGAG
62463041 ATA
1 ATA
62463044 TATGATTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (27 bp):
ATAAAATGACGATTATGCCCCAATGAG
Found at i:62465011 original size:13 final size:13
Alignment explanation
Indices: 62464993--62465017 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62464983 GTGTCTTATC
62464993 AAGGCTTGGATCG
1 AAGGCTTGGATCG
62465006 AAGGCTTGGATC
1 AAGGCTTGGATC
62465018 TTTGGAGCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
AAGGCTTGGATCG
Found at i:62465558 original size:28 final size:28
Alignment explanation
Indices: 62465526--62465590 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
62465516 ATTTACTAGA
*
62465526 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
62465554 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
62465582 ATACCCCTA
1 ATACCCCTA
62465591 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:62465739 original size:28 final size:28
Alignment explanation
Indices: 62465696--62465796 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
62465686 AGGAAGCGTC
* *
62465696 CTGGTGGCTATGCCACAAATTATTTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGTT
* * *
62465724 CTGGTGGCTCTACCACATATT-TCTCTT
1 CTGGTGGCTCTGCCACAAATTATCTGTT
* *
62465751 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTGT-T
* *
62465780 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
62465797 TTCTCTGTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
27 21 0.36
28 22 0.38
29 15 0.26
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGTT
Found at i:62465766 original size:27 final size:28
Alignment explanation
Indices: 62465696--62465785 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
62465686 AGGAAGCGTC
* *
62465696 CTGGTGGCTA-TGCCACAAATTATTTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTCTT
* * *
62465724 CTGGTGGCTCTACCACATATT-TCTCTT
1 CTGGTGGCACTGCCACAAATTATCTCTT
* *
62465751 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTCT-T
62465780 CTGGTG
1 CTGGTG
62465786 ACTCTGTCAC
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
27 21 0.43
28 21 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTCTT
Found at i:62474748 original size:28 final size:28
Alignment explanation
Indices: 62474690--62474925 Score: 318
Period size: 28 Copynumber: 8.6 Consensus size: 28
62474680 TAAATTGTGC
**
62474690 AGCACTAAGTGTGC-GAATTGACTATGT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
* *
62474717 AGCACTAAGTGTCCGGGTTTGACTATGC
1 AGCACTAAGTGTGCGGGTTTGACTATGT
**
62474745 AGCACTAAGTGTGC-GAATTGACTATGT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
62474772 AGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
*
62474800 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
*
62474828 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
* *
62474855 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
* * *
62474883 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGGGTTTGACTATGT
*
62474910 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
62474926 ACTTAATATA
Statistics
Matches: 191, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
27 87 0.46
28 104 0.54
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGGTTTGACTATGT
Found at i:62474759 original size:55 final size:56
Alignment explanation
Indices: 62474669--62474924 Score: 340
Period size: 55 Copynumber: 4.6 Consensus size: 56
62474659 TTGGCGCTAC
* * *
62474669 GTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAA
1 GTGTGCGGGTTT-GACTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
*
62474725 GTGTCCGGGTTTGACTATGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAA
1 GTGTGCGGGTTTGACTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
* *
62474780 GTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAA
1 GTGTGCGGGTTTGACTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
* * * *
62474836 GTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAA
1 GTGTGCGGGTTTGACTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
* * ** *
62474891 GTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 GTGTGCGGGTTTGACTATGCAGCACTAAGTGTGCG
62474925 GACTTAATAT
Statistics
Matches: 187, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
55 150 0.80
56 37 0.20
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (56 bp):
GTGTGCGGGTTTGACTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
Found at i:62474809 original size:83 final size:83
Alignment explanation
Indices: 62474690--62474924 Score: 339
Period size: 83 Copynumber: 2.9 Consensus size: 83
62474680 TAAATTGTGC
** *
62474690 AGCACTAAGTGTGC-GAATTGACTATGTAGCACTAAGTGTCCGGGTTTGACTATGCAGCACTAAG
1 AGCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTCCGAGTTTGACTATGCAGCACTAAG
62474754 TGTGCGAATTGACTATGT
66 TGTGCGAATTGACTATGT
* *
62474772 AGCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTCCGAGTTTGACTATGCAGCACTAAG
*
62474837 TGTGCGAGTTGACTATGT
66 TGTGCGAATTGACTATGT
* * * * ** *
62474855 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAG
1 AGCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTCCGAGTTTGACTATGCAGCACTAAG
62474919 TGTGCG
66 TGTGCG
62474925 GACTTAATAT
Statistics
Matches: 141, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
82 36 0.26
83 105 0.74
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTCCGAGTTTGACTATGCAGCACTAAG
TGTGCGAATTGACTATGT
Done.