Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 186 of 373
Found at i:62482847 original size:27 final size:27
Alignment explanation
Indices: 62482814--62483020 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
62482804 TAAATTGTGC
*
62482814 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62482841 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
62482869 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62482896 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
62482924 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62482951 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
62482979 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62483006 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62483021 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62482878 original size:55 final size:55
Alignment explanation
Indices: 62482814--62483020 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
62482804 TAAATTGTGC
62482814 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
62482869 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
62482924 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
62482979 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
62483021 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:62489930 original size:12 final size:12
Alignment explanation
Indices: 62489913--62489938 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62489903 TGAGATTGCA
62489913 TTTTCATAACAT
1 TTTTCATAACAT
62489925 TTTTCATAACAT
1 TTTTCATAACAT
62489937 TT
1 TT
62489939 GCACTATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (12 bp):
TTTTCATAACAT
Found at i:62499363 original size:50 final size:49
Alignment explanation
Indices: 62499283--62499437 Score: 152
Period size: 50 Copynumber: 3.1 Consensus size: 49
62499273 CATTAGGGAT
* *
62499283 TACCAATTCTTAGCTCGTATGAGCTTACCGATATT-CAGCTCGTAAGAGCT-
1 TACCGATTC-TAGCTCGTATGAGATTACCGAT-TTACAGCTCGTAAGAG-TA
* * *
62499333 TGCCGATTCTCAGCTCGTATAAGATTACCGATTTACAGCTCGTGAGAGTA
1 TACCGATTCT-AGCTCGTATGAGATTACCGATTTACAGCTCGTAAGAGTA
* * * *
62499383 TACCGATTCATAGCTCGTATGAGCATATACCGATTCATAGCTCGTATGAGCA
1 TACCGATTC-TAGCTCGTATGAG-AT-TACCGATTTACAGCTCGTAAGAGTA
62499435 TAC
1 TAC
62499438 ATGTACAAGA
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
49 4 0.05
50 57 0.66
51 3 0.03
52 23 0.26
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (49 bp):
TACCGATTCTAGCTCGTATGAGATTACCGATTTACAGCTCGTAAGAGTA
Found at i:62499436 original size:27 final size:26
Alignment explanation
Indices: 62499281--62499435 Score: 137
Period size: 25 Copynumber: 6.1 Consensus size: 26
62499271 GTCATTAGGG
* *
62499281 ATTACCAATTCTTAGCTCGTATGAGC
1 ATTACCGATTCATAGCTCGTATGAGC
*
62499307 -TTACCGA-T-ATTCAGCTCGTAAGAGC
1 ATTACCGATTCA-T-AGCTCGTATGAGC
* *
62499332 -TTGCCGATTC-TCAGCTCGTATAAG-
1 ATTACCGATTCAT-AGCTCGTATGAGC
* * *
62499356 ATTACCGATTTACAGCTCGTGA-GAGT
1 ATTACCGATTCATAGCTCGT-ATGAGC
62499382 A-TACCGATTCATAGCTCGTATGAGC
1 ATTACCGATTCATAGCTCGTATGAGC
62499407 ATATACCGATTCATAGCTCGTATGAGC
1 AT-TACCGATTCATAGCTCGTATGAGC
62499434 AT
1 AT
62499436 ACATGTACAA
Statistics
Matches: 105, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
24 3 0.03
25 73 0.70
26 3 0.03
27 26 0.25
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
ATTACCGATTCATAGCTCGTATGAGC
Found at i:62501618 original size:28 final size:28
Alignment explanation
Indices: 62501574--62501664 Score: 114
Period size: 28 Copynumber: 3.3 Consensus size: 28
62501564 GGAGGAAGCG
62501574 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
62501602 TTCTGGTGGCTAAGCCACAAATATCT-A
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
62501629 TTCAGGGTGGCTCTGCCAC-AATATCTGT
1 TTC-TGGTGGCTATGCCACAAATATCTGT
*
62501657 ATCTGGTG
1 TTCTGGTG
62501665 ACTCTGTTAG
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 14 0.26
28 39 0.74
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:62504348 original size:27 final size:27
Alignment explanation
Indices: 62504318--62504434 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 27
62504308 TAATACCATG
* *
62504318 CAGGGGTATTACGGTCATTTTTCTCTA
1 CAGGGGTATTACGGTCATTTTACACTA
* ** *
62504345 CAGGGGT-TTTCAATAATTTTACACTA
1 CAGGGGTATTACGGTCATTTTACACTA
* * * *
62504371 TAAGGGTATTTCGGTCATTTTACCCTA
1 CAGGGGTATTACGGTCATTTTACACTA
* * * *
62504398 CATGGGCATTACGGTTATTTTACA-AA
1 CAGGGGTATTACGGTCATTTTACACTA
62504424 CTAGGGGTATT
1 C-AGGGGTATT
62504435 TTGATAATTT
Statistics
Matches: 67, Mismatches: 21, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
26 20 0.30
27 47 0.70
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTACGGTCATTTTACACTA
Found at i:62504444 original size:27 final size:27
Alignment explanation
Indices: 62504414--62504472 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
62504404 CATTACGGTT
62504414 ATTTTACAAACTAG-GGGTATTTTGATA
1 ATTTTACAAAC-AGAGGGTATTTTGATA
** *
62504441 ATTTTGTAAACCGAGGGTATTTTGATA
1 ATTTTACAAACAGAGGGTATTTTGATA
62504468 ATTTT
1 ATTTT
62504473 GTAAATCGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.44
Consensus pattern (27 bp):
ATTTTACAAACAGAGGGTATTTTGATA
Found at i:62504473 original size:27 final size:27
Alignment explanation
Indices: 62504428--62504489 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
62504418 TACAAACTAG
62504428 GGGTATTTTGATAATTTTGTAAACCGA
1 GGGTATTTTGATAATTTTGTAAACCGA
* *
62504455 GGGTATTTTGATAATTTTGTAAATCGG
1 GGGTATTTTGATAATTTTGTAAACCGA
62504482 GGGTATTT
1 GGGTATTT
62504490 ATGACCCATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTGTAAACCGA
Found at i:62514324 original size:25 final size:25
Alignment explanation
Indices: 62514275--62514326 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
62514265 TCTAAGACAT
*
62514275 GGGTTCTCACATGGCCCTAGGACAC
1 GGGTTCTCACATGGCCCTAGAACAC
*
62514300 GGGTTGTCACATGG-CCTAGCAACAC
1 GGGTTCTCACATGGCCCTAG-AACAC
62514325 GG
1 GG
62514327 TCGTGTGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (25 bp):
GGGTTCTCACATGGCCCTAGAACAC
Found at i:62517196 original size:20 final size:21
Alignment explanation
Indices: 62517165--62517205 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
62517155 CCACATACAT
62517165 TCAAATATATAAGC-TCATATA
1 TCAAATATATAA-CTTCATATA
62517186 TCAAA-ATATAACTTCATATA
1 TCAAATATATAACTTCATATA
62517206 CACTAGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.05
20 13 0.68
21 5 0.26
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (21 bp):
TCAAATATATAACTTCATATA
Found at i:62521441 original size:37 final size:37
Alignment explanation
Indices: 62521249--62521430 Score: 294
Period size: 37 Copynumber: 4.9 Consensus size: 37
62521239 GCTCAGATGA
** * *
62521249 AATCTCCACACAAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62521286 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
62521323 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62521360 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA-AT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
62521396 ATATTTCCACACGTAGTCATCGGGTCTTACCCGGA
1 A-ATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62521431 ATATATTTCC
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
36 3 0.02
37 134 0.98
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:62521632 original size:48 final size:48
Alignment explanation
Indices: 62521577--62522115 Score: 907
Period size: 48 Copynumber: 11.1 Consensus size: 48
62521567 ACACATCGCC
*
62521577 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
62521625 TACATATTTCACTTTATCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
62521673 TACATATTTCACATTAGCCATTCGACTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
62521721 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
62521769 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62521817 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62521865 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62521913 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
62521963 TATATATTTCACATTAGCCATTCGGCTTTACCACACATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
62522013 TATATATTTCACATTAGCCATTCGGCTTTACCACACATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
62522063 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62522111 TACAT
1 TACAT
62522116 CAATTTCCGC
Statistics
Matches: 476, Mismatches: 13, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
48 331 0.70
50 145 0.30
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:62525506 original size:28 final size:27
Alignment explanation
Indices: 62525475--62525565 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 27
62525465 CTGACTGATT
*
62525475 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
62525503 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
*
62525532 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
62525560 TCGCAC
1 TCGCAC
62525566 TCTCAGTGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.04
28 26 0.50
29 23 0.44
30 1 0.02
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:62525832 original size:40 final size:40
Alignment explanation
Indices: 62525788--62526454 Score: 929
Period size: 40 Copynumber: 16.7 Consensus size: 40
62525778 CCAGCATGAT
* * * *
62525788 TGCTCTTCGGGACCTAGCCCGGTTATAACACCAGGACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* ** * * *
62525828 TGCTCTTCGGGACTTAACCCTAATGTAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* *
62525868 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
62525908 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
62525948 TGCTCTTTGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * **
62525988 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
62526028 TGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
62526068 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
62526108 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
62526148 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
62526188 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * **
62526228 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
62526268 TGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
62526308 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
62526348 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
* * * *
62526388 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
62526428 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
62526455 TATAACTCTC
Statistics
Matches: 560, Mismatches: 67, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 560 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:62525921 original size:80 final size:80
Alignment explanation
Indices: 62525772--62526454 Score: 1024
Period size: 80 Copynumber: 8.5 Consensus size: 80
62525762 GTCCGAATAC
* * * * * * *
62525772 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGTTATAACACCAGGACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
* **
62525837 GGACTTAACCCTAAT
66 GGACTTAGCCCGGAT
** * * * * *
62525852 GTAACTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62525917 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
*
62525932 ACATCACTAGCACGAATGCTCTTTGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62525997 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
62526012 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62526077 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* * * * * * * *
62526092 ATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62526157 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
62526172 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62526237 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
62526252 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62526317 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* * * * * * * *
62526332 ATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
62526397 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
62526412 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
62526455 TATAACTCTC
Statistics
Matches: 542, Mismatches: 61, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 542 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:62525989 original size:120 final size:120
Alignment explanation
Indices: 62525772--62526454 Score: 1060
Period size: 120 Copynumber: 5.7 Consensus size: 120
62525762 GTCCGAATAC
* * * * * * *
62525772 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGTTATAACACCAGGACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
* ** * * * * *
62525837 GGACTTAACCCTAATGTAACTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGAT
66 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
* * * * * * *
62525892 ATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTTG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
62525957 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
66 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
62526012 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
62526077 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
66 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
* *
62526132 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
62526197 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
66 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
62526252 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
62526317 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
66 GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
* *
62526372 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
62526437 GGACTTAGCCCGGATATA
66 GGACTTAGCCCGGATATA
62526455 TATAACTCTC
Statistics
Matches: 514, Mismatches: 49, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
120 514 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (120 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCG
GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:62527773 original size:37 final size:37
Alignment explanation
Indices: 62527714--62527896 Score: 269
Period size: 37 Copynumber: 4.9 Consensus size: 37
62527704 AGCTCAGATG
* ** *
62527714 AAATCTCCAGACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62527751 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
62527788 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62527825 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62527861 AATATTTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AA-ATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62527897 ATATATTTCC
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
36 2 0.01
37 132 0.99
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:62528098 original size:48 final size:48
Alignment explanation
Indices: 62528043--62528533 Score: 865
Period size: 48 Copynumber: 10.1 Consensus size: 48
62528033 ACACATCGCC
*
62528043 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
62528091 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
62528139 TACATATTTCACAGTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
62528187 TACCTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62528235 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62528283 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62528331 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
*
62528383 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62528431 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
62528481 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62528529 TACAT
1 TACAT
62528534 CAATTTCCGC
Statistics
Matches: 426, Mismatches: 11, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
48 332 0.78
50 47 0.11
52 47 0.11
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:62540661 original size:43 final size:43
Alignment explanation
Indices: 62540586--62540871 Score: 288
Period size: 43 Copynumber: 6.6 Consensus size: 43
62540576 ACAAAAGTTT
* *
62540586 GCGGCG-TTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTA
1 GCGGCGCTTTTTTA-AAAAACGCCGCTATAGACCAGGACCTTTA
* * *
62540629 -CTGGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTA
1 GC-GGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * *
62540672 GCGGCGCTTTTATAAAAAACGCCACTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * *
62540715 GCGGCGCATTTATAAAAAACGCCGCTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * * *
62540758 ACGGTGCTTTTATAAAAAACGCCGCTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * * *
62540801 GCGGTGTTTTTTTACAAAAGCGCCACTATAGACCAAGAACTTTA
1 GCGGCGCTTTTTTA-AAAAACGCCGCTATAGACCAGGACCTTTA
62540845 GCGGCGCTTTTTTAAAAAACGCCGCTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTA
62540872 ATTTGCCCAG
Statistics
Matches: 207, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.00
43 164 0.79
44 42 0.20
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
Found at i:62540721 original size:86 final size:86
Alignment explanation
Indices: 62540631--62540867 Score: 325
Period size: 86 Copynumber: 2.7 Consensus size: 86
62540621 GACCTTTACT
62540631 GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCA
1 GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCA
62540696 CTATAGACCTGTACTTTTAGC
66 CTATAGACCTGTACTTTTAGC
* * * * * * *
62540717 GGCGCATTTATAAAAAACGCCGCTATAGACC-TGTACTTTTAACGGTGCTTTTATAAAAAACGCC
1 GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAAC-TTTAGCGGCGCTTTTATAAAAAACGCC
*
62540781 GCTATAGACCTGTACTTTTAGC
65 ACTATAGACCTGTACTTTTAGC
* * * *
62540803 GGTGTTTTTTTACAAAAGCGCCA-CTATAGACCAAGAACTTTAGCGGCGCTTTTTTAAAAAACGC
1 GGCGCTTTTTTA-AAAAACG-CAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGC
62540867 C
64 C
62540868 GCTAATTTGC
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
85 3 0.02
86 82 0.64
87 39 0.30
88 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (86 bp):
GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCA
CTATAGACCTGTACTTTTAGC
Found at i:62540747 original size:129 final size:130
Alignment explanation
Indices: 62540595--62540872 Score: 332
Period size: 129 Copynumber: 2.2 Consensus size: 130
62540585 TGCGGCGTTT
* *
62540595 TTTAT-AAAAGCGCCGCTAAAGACCAGGACCTTT-ACTGGCGCTTTTTTAAAAAACGCAGCTATA
1 TTTATAAAAAACGCCGCTAAAGACCAGGACCTTTAAC-GGCGCTTTTATAAAAAACGCAGCTATA
* *
62540658 GACCAAGAAC-TTTAGCGGCGCTTTTATA-AAAAACGCCACTATAGACC-TGTACTTTTAGCGGC
65 GACC-AGAACTTTTAGCGGCGCTTTTATACAAAAACGCCACTATAGACCAAGAAC-TTTAGCGGC
62540720 GCA
128 GCA
* * * * * *
62540723 TTTATAAAAAACGCCGCTATAGACCTGTACTTTTAACGGTGCTTTTATAAAAAACGCCGCTATAG
1 TTTATAAAAAACGCCGCTAAAGACCAGGACCTTTAACGGCGCTTTTATAAAAAACGCAGCTATAG
* * * * * * *
62540788 ACCTGTACTTTTAGCGGTGTTTTTTTACAAAAGCGCCACTATAGACCAAGAACTTTAGCGGCGCT
66 ACCAGAACTTTTAGCGGCGCTTTTATACAAAAACGCCACTATAGACCAAGAACTTTAGCGGCGCA
*
62540853 TTTTTAAAAAACGCCGCTAA
1 TTTATAAAAAACGCCGCTAA
62540873 TTTGCCCAGT
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
128 8 0.06
129 66 0.52
130 49 0.39
131 3 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (130 bp):
TTTATAAAAAACGCCGCTAAAGACCAGGACCTTTAACGGCGCTTTTATAAAAAACGCAGCTATAG
ACCAGAACTTTTAGCGGCGCTTTTATACAAAAACGCCACTATAGACCAAGAACTTTAGCGGCGCA
Found at i:62541193 original size:21 final size:21
Alignment explanation
Indices: 62541169--62541216 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
62541159 TCCTGTTCTG
62541169 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
*
62541190 CTCCGCCTCCCTCGTTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
62541211 CTCCGC
1 CTCCGC
62541217 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.56, G:0.19, T:0.25
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:62543171 original size:40 final size:40
Alignment explanation
Indices: 62543099--62543309 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
62543089 TCTTCGGAAT
* * * * *
62543099 TTAG-CCGGATATAACCACAAGCGCAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
62543138 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
62543178 TTAGCCCGGAT-ATATCAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
62543218 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
62543258 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
62543298 TTAGCCCGGATA
1 TTAGCCCGGATA
62543310 TCATTCAAAT
Statistics
Matches: 151, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.03
40 142 0.94
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:62545129 original size:18 final size:18
Alignment explanation
Indices: 62545097--62545134 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
62545087 TACAATATAG
62545097 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
62545116 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
62545133 TA
1 TA
62545135 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:62550714 original size:21 final size:21
Alignment explanation
Indices: 62550690--62550729 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
62550680 AAATTAATTC
*
62550690 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
62550711 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
62550730 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:62550910 original size:460 final size:462
Alignment explanation
Indices: 62550331--62551569 Score: 2360
Period size: 461 Copynumber: 2.7 Consensus size: 462
62550321 TATTAATATA
62550331 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62550396 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62550461 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
62550526 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
*
62550591 GCAACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
**
62550656 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACTTAA-GTTGAATCAAATAATACTTAAG
326 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAACGTTGAATCAAATAATACTTAAG
62550720 TTGAACCAAAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAA
391 TTGAACCAAAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAA
62550785 ATTAG-T
456 ATTAGTT
*
62550791 ACAAAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62550856 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62550921 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
62550986 -ATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62551050 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
**
62551115 AAGCAAGCTACATATATGGTAATAAAATTAATTCATTGAAAACTGTTGAATCAAATAATACTTAA
326 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAAC-GTTGAATCAAATAATACTTAA
62551180 GTTGAACCAAAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAA
390 GTTGAACCAAAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAA
62551245 AATTAGTT
455 AATTAGTT
* *
62551253 A-TAACTTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62551317 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62551382 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
*
62551447 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGTAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62551512 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
62551570 TTGGAGAGAA
Statistics
Matches: 765, Mismatches: 10, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
459 166 0.22
460 194 0.25
461 282 0.37
462 123 0.16
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (462 bp):
ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAACGTTGAATCAAATAATACTTAAG
TTGAACCAAAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAA
ATTAGTT
Found at i:62553492 original size:133 final size:133
Alignment explanation
Indices: 62553254--62553505 Score: 504
Period size: 133 Copynumber: 1.9 Consensus size: 133
62553244 GAATTCAACA
62553254 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
62553319 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
62553384 ATT
131 ATT
62553387 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
62553452 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
62553506 GGAATCACCA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 119 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:62556902 original size:10 final size:11
Alignment explanation
Indices: 62556881--62556931 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
62556871 ACTAAACCAC
62556881 TTTTCATATATA
1 TTTT-ATATATA
62556893 TATTTATATATA
1 T-TTTATATATA
*
62556905 TTTTAAAATAATA
1 TTTT-ATAT-ATA
62556918 TTTTATATATA
1 TTTTATATATA
62556929 TTT
1 TTT
62556932 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:62556940 original size:15 final size:15
Alignment explanation
Indices: 62556920--62556951 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
62556910 AAATAATATT
*
62556920 TTATATATATTTATC
1 TTATATACATTTATC
62556935 TTATATACATTTATC
1 TTATATACATTTATC
62556950 TT
1 TT
62556952 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:62558075 original size:40 final size:40
Alignment explanation
Indices: 62557980--62558196 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
62557970 GGTTATGGGA
62557980 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-G
* *
62558021 TTTTTAGCGGCGTTTTACCAAAAGCGGCGCTAATGCCCTG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
* *
62558061 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
* * *
62558101 -TTTTAACGGTGTTTTA-TAGAAAGCGCCGCTAATGCTCTG
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTG
* *
62558140 TTTTTAGCGGCGTTTTACCGAAAGTGCTC-CTAATGCTCTG
1 TTTTTAGCGGCGTTTTACCAAAAGCGC-CGCTAATGCTCTG
62558180 TTTTTAGCGGCGTTTTA
1 TTTTTAGCGGCGTTTTA
62558197 GTGAAAAACG
Statistics
Matches: 158, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 33 0.21
40 87 0.55
41 38 0.24
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
Found at i:62558145 original size:79 final size:79
Alignment explanation
Indices: 62557980--62558196 Score: 294
Period size: 79 Copynumber: 2.7 Consensus size: 79
62557970 GGTTATGGGA
* *
62557980 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-G-TTTTAACGGCGTTTTACCAAAAG
*
62558045 CGGCGCTAATGCCCTG
64 CGCCGCTAATGCCCTG
* * *
62558061 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTGTTTTAACGGTGTTTTA-TAGAAAGC
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGTTTTAACGGCGTTTTACCA-AAAGC
*
62558125 GCCGCTAATGCTCTG
65 GCCGCTAATGCCCTG
* *
62558140 TTTTTAGCGGCGTTTTACCGAAAGTGCTC-CTAATGCTCTGTTTTTAGCGGCGTTTTA
1 TTTTTAGCGGCGTTTTACCGAAAGCGC-CGCTAATGCTCTG-TTTTAACGGCGTTTTA
62558197 GTGAAAAACG
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 68 0.56
80 16 0.13
81 37 0.30
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (79 bp):
TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGTTTTAACGGCGTTTTACCAAAAGCG
CCGCTAATGCCCTG
Found at i:62558805 original size:26 final size:26
Alignment explanation
Indices: 62558726--62558805 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
62558716 TTAAAACTGA
* * *
62558726 TAAAATTACTGAAATACCTTTATAGGTG
1 TAAAATTACTGATATACC-TCA-AGGAG
* * * * *
62558754 GAAAATTTACAGATTTACCCCTAGGAG
1 TAAAA-TTACTGATATACCTCAAGGAG
62558781 TAAAATTACTGATATACCTCAAGGA
1 TAAAATTACTGATATACCTCAAGGA
62558806 TTAAGGTTGA
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
26 16 0.42
27 8 0.21
28 4 0.11
29 10 0.26
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (26 bp):
TAAAATTACTGATATACCTCAAGGAG
Found at i:62561201 original size:42 final size:42
Alignment explanation
Indices: 62561142--62561233 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
62561132 TGGCCCTTAG
* * * *
62561142 GCCCATTTTAATATCACATGTAATGTC-AATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAAT-ACAAATGAATGTATGCAA
62561184 GCCCATTTCAATATCACATGAAATACAAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACAAATGAATGTATGCAA
62561226 GCCCATTT
1 GCCCATTT
62561234 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACAAATGAATGTATGCAA
Found at i:62561406 original size:25 final size:26
Alignment explanation
Indices: 62561378--62561500 Score: 133
Period size: 26 Copynumber: 4.8 Consensus size: 26
62561368 CCTCTTTAAT
* **
62561378 AACTGGGGCA-AAGCCCTTTGCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
62561403 AACTGGGGCA-AAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * * **
62561428 AATTAGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
62561454 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
62561480 AACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTT
62561501 GCACTTCTTC
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
25 29 0.36
26 52 0.64
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:62561489 original size:52 final size:51
Alignment explanation
Indices: 62561378--62561500 Score: 167
Period size: 52 Copynumber: 2.4 Consensus size: 51
62561368 CCTCTTTAAT
* * *
62561378 AACTGGGGCA-AAGCCCTTTGCGGTAAACTGGGGCAAAACCCTTTTCAATA
1 AACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCAAAACCCTTTTCAATA
* * *
62561428 AATTAGGGCATAAGCCATTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCA-AAACCCTTTTCAATA
*
62561480 AACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCATTTT
62561501 GCACTTCTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 8 0.13
51 22 0.35
52 32 0.52
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (51 bp):
AACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCAAAACCCTTTTCAATA
Found at i:62562333 original size:27 final size:27
Alignment explanation
Indices: 62562303--62562382 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
62562293 GGGCATATTC
* *
62562303 GTCATTTTACTATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
62562330 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
62562357 GTCACTTTACCCTACAGGGGCTTTAC
1 GTCACTTTACCATACAGGGGCTTTAC
62562383 AGTCTTTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:62562403 original size:27 final size:27
Alignment explanation
Indices: 62562315--62562386 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
62562305 CATTTTACTA
*
62562315 TACAGGGG-TATTACGGTCACTTTACCC
1 TACAGGGGCT-TTACAGTCACTTTACCC
*
62562342 TACAGGGGCTTTACGGTCACTTTACCC
1 TACAGGGGCTTTACAGTCACTTTACCC
62562369 TACAGGGGCTTTACAGTC
1 TACAGGGGCTTTACAGTC
62562387 TTTTTACCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (27 bp):
TACAGGGGCTTTACAGTCACTTTACCC
Found at i:62562468 original size:27 final size:27
Alignment explanation
Indices: 62562438--62562490 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
62562428 GGGTGTTTTG
62562438 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
62562465 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
62562491 CATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:62562496 original size:27 final size:27
Alignment explanation
Indices: 62562447--62562784 Score: 107
Period size: 27 Copynumber: 12.5 Consensus size: 27
62562437 GGTAAATCTA
62562447 TAAACCAAGGGTATTTCAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
62562474 TAAACCAATGGTATTTCCA-TAATTTT-
1 TAAACCAAGGGTATTT-CAGTAATTTTG
* *
62562500 TAGAAAGTCAAGGGTATTTCTA-TAACTTTG
1 T--AAA-CCAAGGGTATTTC-AGTAATTTTG
* * ** *
62562530 TAAATCAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** * * **
62562557 CAAATTGAGGGTATTTCGGCAATTTCA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *
62562584 CAAACC-AGTGGTATTTTC-GTAATTTTA
1 TAAACCAAG-GGTA-TTTCAGTAATTTTG
* * * ** *
62562611 CAAACTAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** *
62562638 CAAATTGAGGGTATTTC-GATAATTTTA
1 TAAACCAAGGGTATTTCAG-TAATTTTG
* * * *
62562665 CAAACCAAGGGTATTTTAGCAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * * ** *
62562692 CAGA-CTAGGGTATTTTGGTAATTTTAC
1 TAAACCAAGGGTATTTCAGTAATTTT-G
* * * **
62562719 T-GATCGAGGGTATTTTGGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * *
62562745 TAAACCGATGGTATTTTAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
62562772 TAAATCAAGGGTA
1 TAAACCAAGGGTA
62562785 AAACAGTAAT
Statistics
Matches: 248, Mismatches: 47, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
26 28 0.11
27 187 0.75
28 15 0.06
29 17 0.07
30 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCAGTAATTTTG
Found at i:62562597 original size:54 final size:53
Alignment explanation
Indices: 62562538--62562770 Score: 216
Period size: 54 Copynumber: 4.3 Consensus size: 53
62562528 TGTAAATCAG
** * *
62562538 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGCAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCA
* * * **
62562591 GTGGTATTTTCGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACCGA-GGGTATTTTGGCAATTTTACAAA-CCA
* * * * * *
62562646 GGGTATTTCGATAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCA
** * * **
62562699 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACC-A
* *
62562753 TGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
62562771 GTAAATCAAG
Statistics
Matches: 144, Mismatches: 31, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
53 43 0.30
54 97 0.67
55 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCA
Found at i:62562630 original size:81 final size:81
Alignment explanation
Indices: 62562536--62562770 Score: 323
Period size: 81 Copynumber: 2.9 Consensus size: 81
62562526 TTTGTAAATC
* *
62562536 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGCAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
*
62562601 CGTAATTTTACAAACT
66 AGTAATTTTACAAACT
*
62562617 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCAAG-GGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGTGGTATTT
* *
62562681 TAGCAATTTTACAGACT
65 TAGTAATTTTACAAACT
** * * **
62562698 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACC-GATGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-TGGTATTT
62562761 TAGTAATTTT
65 TAGTAATTTT
62562771 GTAAATCAAG
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
80 61 0.45
81 73 0.53
82 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
AGTAATTTTACAAACT
Found at i:62562783 original size:54 final size:53
Alignment explanation
Indices: 62562427--62562784 Score: 186
Period size: 54 Copynumber: 6.6 Consensus size: 53
62562417 TCATCCTACA
* * * * * ** **
62562427 AGGGTGTTTTGGTAAATCTATAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
* * * * * ** *
62562480 AATGGTATTTCCA-TAATTTTTAGAAAGTCAAGGGTATTTCT-ATAACTTTGTAAATC
1 -AGGGTATTT-TAGTAA-TTTTATAAA-TCAAGGGTATTT-TGGTAATTTTACAAACC
* * ** * * *
62562536 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGCAATTTCACAAACC
1 A-GGGTATTTTAGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
* * * **
62562590 AGTGGTATTTTCGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTAGTAATTTTATAAATC-AAGGGTATTTTGGTAATTTTACAAA-CC
* * * * * * *
62562645 AGGGTA-TTTCGATAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT
1 AGGGTATTTTAG-TAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
* * * **
62562698 AGGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTGTAAACC
1 AGGGTATTTTAGTAATTTTA-TAAATCAAGGGTATTTTGGTAATTTTACAAACC
* *
62562751 GATGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 -AGGGTATTTTAGTAATTTTATAAATCAAGGGTA
62562785 AAACAGTAAT
Statistics
Matches: 231, Mismatches: 57, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
53 43 0.19
54 137 0.59
55 18 0.08
56 33 0.14
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
Found at i:62562792 original size:27 final size:26
Alignment explanation
Indices: 62562762--62562865 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 26
62562752 ATGGTATTTT
* * *
62562762 AGTAATTTTGTAAATCAAGGGTAAAA
1 AGTAATTCTATAAATCGAGGGTAAAA
62562788 CAGTAATTCTATAAATCGAGGGTAAAA
1 -AGTAATTCTATAAATCGAGGGTAAAA
* *
62562815 TGGTAATTCTATAAATTGAGGGTAAAA
1 -AGTAATTCTATAAATCGAGGGTAAAA
62562842 AGGTAATTCTATAAATCGAGGGTA
1 A-GTAATTCTATAAATCGAGGGTA
62562866 CTTTGGTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (26 bp):
AGTAATTCTATAAATCGAGGGTAAAA
Found at i:62562821 original size:54 final size:54
Alignment explanation
Indices: 62562763--62562865 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
62562753 TGGTATTTTA
* *
62562763 GTAATTTTGTAAATCAAGGGTAAAACA-GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAA-AGGTAATTCTATAAATCGAGGGTAAAATG
**
62562817 GTAATTCTATAAATTGAGGGTAAAAAGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCAAGGGTAAAAAGGTAATTCTATAAATCGAGGGTA
62562866 CTTTGGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.02
54 43 0.98
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAATCAAGGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAATG
Found at i:62562873 original size:27 final size:27
Alignment explanation
Indices: 62562698--62562876 Score: 126
Period size: 27 Copynumber: 6.6 Consensus size: 27
62562688 TTTACAGACT
* * *
62562698 AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTAATTTGGTAATTCTA-TAAATCG
* * * *
62562725 AGGGTATTTTGGTAATTTTGTAAACCG
1 AGGGTAATTTGGTAATTCTATAAATCG
* * * * * *
62562752 ATGGTATTTTAGTAATTTTGTAAATCA
1 AGGGTAATTTGGTAATTCTATAAATCG
****
62562779 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAATTTGGTAATTCTATAAATCG
** *
62562806 AGGGTAAAATGGTAATTCTATAAATTG
1 AGGGTAATTTGGTAATTCTATAAATCG
***
62562833 AGGGTAAAAAGGTAATTCTATAAATCG
1 AGGGTAATTTGGTAATTCTATAAATCG
*
62562860 AGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
62562877 TTACAATTTG
Statistics
Matches: 127, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 126 0.99
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTATAAATCG
Found at i:62562873 original size:54 final size:54
Alignment explanation
Indices: 62562779--62562890 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
62562769 TTGTAAATCA
*
62562779 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATTG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATTG
*** * *
62562833 AGGGTAAAA-AGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAATTTG
1 AGGGTAAAACA-GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATTG
62562887 AGGG
1 AGGG
62562891 AATTTCAGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.31
Consensus pattern (54 bp):
AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATTG
Found at i:62583502 original size:47 final size:47
Alignment explanation
Indices: 62583425--62583531 Score: 196
Period size: 47 Copynumber: 2.3 Consensus size: 47
62583415 TCCTTCGGGA
* *
62583425 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
62583472 CTTATCACATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
62583519 CTTATCACATATA
1 CTTATCACATATA
62583532 CATATCTTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACAGTCATCACATCGGCCATTAGGC
Found at i:62585398 original size:13 final size:13
Alignment explanation
Indices: 62585380--62585404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62585370 TACTAAATTT
62585380 TCATGGATTCAAA
1 TCATGGATTCAAA
62585393 TCATGGATTCAA
1 TCATGGATTCAA
62585405 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:62587873 original size:43 final size:43
Alignment explanation
Indices: 62587826--62587909 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
62587816 GCATTAAGCT
* * *
62587826 TGCTAGGCATGAAAGCCTGAATACATATCACCGGCACGAATCC
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
*
62587869 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAT
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAAT
62587910 GCTCTTCGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.30, G:0.23, T:0.15
Consensus pattern (43 bp):
TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
Found at i:62588036 original size:40 final size:40
Alignment explanation
Indices: 62587902--62588215 Score: 411
Period size: 40 Copynumber: 7.9 Consensus size: 40
62587892 CACATCACCG
* *
62587902 GCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
62587942 GCATGAATGCTCTTC-GGTCTTAACCC-GAGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGA-TATAACACTA
62587981 -CACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
62588020 GCACGAATGCTCTTCGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
62588060 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
62588100 GCACGAATGCTCTTTGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
62588140 GCACGAGTGCTCTTCGGGACTTAACCCAGATATAGCA-TCG
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-A
* * *
62588180 GCACAAATGCCCTTCGGGACTTAGCCCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAAC
62588216 TCACTGAACT
Statistics
Matches: 237, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
38 15 0.06
39 36 0.15
40 186 0.78
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
Found at i:62588090 original size:80 final size:80
Alignment explanation
Indices: 62587897--62588215 Score: 473
Period size: 80 Copynumber: 4.0 Consensus size: 80
62587887 GAATACACAT
* * * *
62587897 CACCGGCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTAGCATGAATGCTCTTC-GGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
*
62587961 TTAACCCGAGTATAA
66 TTAACCCGGGTATAA
62587976 CACCA-CACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
62588040 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
*
62588055 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTTGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
62588120 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* * * * * * *
62588135 CACCAGCACGAGTGCTCTTCGGGACTTAACCCAGATATAGCA-TCGGCACAAATGCCCTTCGGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-AGCACGAATGCTCTTCGGGT
* *
62588199 CTTAGCCCGGATATAA
65 CTTAACCCGGGTATAA
62588215 C
1 C
62588216 TCACTGAACT
Statistics
Matches: 221, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
78 51 0.23
79 28 0.13
80 142 0.64
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
TTAACCCGGGTATAA
Found at i:62590137 original size:47 final size:46
Alignment explanation
Indices: 62590063--62590215 Score: 261
Period size: 47 Copynumber: 3.3 Consensus size: 46
62590053 TCCTTCGGGA
*
62590063 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGC
* *
62590110 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACA-TGGCCATTAGGC
62590157 CTTATCACATATATACACTTTCACATTCATCACATGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATGGCCATTAGGC
62590203 CTTATCACATATA
1 CTTATCACATATA
62590216 CATATCTTGT
Statistics
Matches: 100, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
46 23 0.23
47 76 0.76
48 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.34
Consensus pattern (46 bp):
CTTATCACATATATACACTTTCACATTCATCACATGGCCATTAGGC
Found at i:62592070 original size:13 final size:13
Alignment explanation
Indices: 62592052--62592076 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62592042 TACTAAATTT
62592052 TCATGGATTCAAA
1 TCATGGATTCAAA
62592065 TCATGGATTCAA
1 TCATGGATTCAA
62592077 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:62598199 original size:47 final size:47
Alignment explanation
Indices: 62598136--62598524 Score: 609
Period size: 47 Copynumber: 8.3 Consensus size: 47
62598126 CCCTTCGGGA
* * * * *
62598136 CTTATCACATTTATACACTTTTACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62598183 CTTATCACATATATACA-TCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * *
62598230 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62598277 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62598324 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62598371 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62598418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
62598465 CTTGTCACATATATACACTTTCACATTCATCTCATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62598512 CTTATCACATATA
1 CTTATCACATATA
62598525 CATATCTTGT
Statistics
Matches: 316, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 314 0.99
48 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62601642 original size:28 final size:28
Alignment explanation
Indices: 62601611--62601708 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
62601601 CTGACCGGCC
*
62601611 TCGCACACATAGTGCTCGGTTAAAGAAT
1 TCGCACACACAGTGCTCGGTTAAAGAAT
** * **
62601639 TCGCACACACAGTG-TCCACTGACCG-AT
1 TCGCACACACAGTGCT-CGGTTAAAGAAT
*
62601666 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGAAT
62601695 TCGCACACACAGTG
1 TCGCACACACAGTG
62601709 TCTCAATTCA
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
27 3 0.06
28 47 0.89
29 3 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAAGAAT
Found at i:62601709 original size:56 final size:56
Alignment explanation
Indices: 62601584--62601710 Score: 227
Period size: 56 Copynumber: 2.3 Consensus size: 56
62601574 AAACGAAATC
* *
62601584 CGCACACACAGTGCCCACTGACCGGCCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGACCGACCTCGCACACATAGTGCTCGGTTAAAGAATT
*
62601640 CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGACCGACCTCGCACACATAGTGCTCGGTTAAAGAATT
62601696 CGCACACACAGTGTC
1 CGCACACACAGTGTC
62601711 TCAATTCATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.19
Consensus pattern (56 bp):
CGCACACACAGTGTCCACTGACCGACCTCGCACACATAGTGCTCGGTTAAAGAATT
Found at i:62601727 original size:25 final size:25
Alignment explanation
Indices: 62601693--62601747 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
62601683 CGGTTAAAGA
*
62601693 ATTCGCACACACAGTGTCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
62601718 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
62601743 ATTCG
1 ATTCG
62601748 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:62601976 original size:40 final size:40
Alignment explanation
Indices: 62601920--62602143 Score: 380
Period size: 40 Copynumber: 5.6 Consensus size: 40
62601910 TCATCGGCAT
* *
62601920 GAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCAC
*
62601960 GAATGCTCTTCGGGACTTAGCCCGAATGTAACACCAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCAC
62602000 GAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCAC
1 GAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCAC
62602040 GAATGCTCTTTC-GGACTTAGCCCGGATGTAACACCAGCAC
1 GAATGCTC-TTCGGGACTTAGCCCGGATGTAACACCAGCAC
62602080 GAATGCTCTTTC-GGACTTAGCCCGGATGTAACACCAGCAC
1 GAATGCTC-TTCGGGACTTAGCCCGGATGTAACACCAGCAC
*
62602120 GAATGCTCTTCGGGACTTAACCCG
1 GAATGCTCTTCGGGACTTAGCCCG
62602144 AATCATCGTC
Statistics
Matches: 177, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
39 3 0.02
40 171 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
GAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCAC
Found at i:62602270 original size:38 final size:38
Alignment explanation
Indices: 62602204--62602316 Score: 154
Period size: 38 Copynumber: 3.0 Consensus size: 38
62602194 GAATTTTAAT
* * * *
62602204 CCGGACATAATCTCTGCACATAGCCATCGGATCTTTAC
1 CCGGACATAATCTCTACATATAGTCATCGGGTCTTTAC
* *
62602242 CCGGGCATAATCTCCACATATAGTCATCGGGTCTTTAC
1 CCGGACATAATCTCTACATATAGTCATCGGGTCTTTAC
* *
62602280 CCGGACACAATCTCTACTTATAGTCATCGGGTCTTTA
1 CCGGACATAATCTCTACATATAGTCATCGGGTCTTTA
62602317 AGCCTGGATT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (38 bp):
CCGGACATAATCTCTACATATAGTCATCGGGTCTTTAC
Found at i:62604329 original size:47 final size:47
Alignment explanation
Indices: 62604266--62604651 Score: 619
Period size: 47 Copynumber: 8.2 Consensus size: 47
62604256 CCCTTCGGGA
* * *
62604266 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
62604313 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62604360 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62604407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62604454 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62604501 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62604548 CTTATCAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
62604595 CTTGTCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62604642 CTTATCACAT
1 CTTATCACAT
62604652 GTACATATCT
Statistics
Matches: 312, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 312 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:62608046 original size:27 final size:26
Alignment explanation
Indices: 62607998--62608057 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62607988 GCGAGGCTGC
*
62607998 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGACACCAGA-A
* * *
62608025 CAGATATTGTGGCTAGGACACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
62608051 CAGATAT
1 CAGATAT
62608058 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:62608412 original size:8 final size:8
Alignment explanation
Indices: 62608399--62608430 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
62608389 TACCAAAGTA
62608399 GGCCCGTT
1 GGCCCGTT
62608407 GGCCCGTT
1 GGCCCGTT
*
62608415 GGCCCATT
1 GGCCCGTT
62608423 GGCCCGTT
1 GGCCCGTT
62608431 TTCAGCCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.38, G:0.34, T:0.25
Consensus pattern (8 bp):
GGCCCGTT
Found at i:62608834 original size:27 final size:27
Alignment explanation
Indices: 62608804--62609003 Score: 276
Period size: 27 Copynumber: 7.4 Consensus size: 27
62608794 GGGGCAAAAT
* * *
62608804 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
62608831 GGTAATTCTATCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
62608858 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62608885 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
62608912 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
62608939 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62608966 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
62608993 GGTAATTCTAC
1 GGTAATTCTAC
62609004 AACTTATCCA
Statistics
Matches: 154, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.02
27 148 0.96
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:62608894 original size:54 final size:54
Alignment explanation
Indices: 62608804--62609002 Score: 308
Period size: 54 Copynumber: 3.7 Consensus size: 54
62608794 GGGGCAAAAT
* * * *
62608804 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTATCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
*
62608858 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
** *
62608912 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
* *
62608966 GGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA
62609003 CAACTTATCC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 132 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
Found at i:62624096 original size:28 final size:28
Alignment explanation
Indices: 62624049--62624118 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
62624039 CACAACCATG
*
62624049 TGTCCCCTTTTATTTAGATTTTATAGTTT
1 TGTCCCCTTTT-TTTAGATTTTACAGTTT
*
62624078 TG-CCCCTATTTTTTGGATTTTACAGTTT
1 TGTCCCCT-TTTTTTAGATTTTACAGTTT
*
62624106 TGTCCCCTGTTTT
1 TGTCCCCTTTTTT
62624119 ACAAATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 26 0.72
29 10 0.28
ACGTcount: A:0.13, C:0.19, G:0.13, T:0.56
Consensus pattern (28 bp):
TGTCCCCTTTTTTTAGATTTTACAGTTT
Found at i:62624447 original size:34 final size:34
Alignment explanation
Indices: 62624390--62624492 Score: 107
Period size: 34 Copynumber: 3.0 Consensus size: 34
62624380 AAGCATGGCT
* * **
62624390 TTGCCACTAAATTGAACAGTTATAAGCATATTAA
1 TTGCTACTATATTGAACTATTATAAGCATATTAA
**
62624424 TTGCTACTATATTGAACTATTATAAGCATATTGG
1 TTGCTACTATATTGAACTATTATAAGCATATTAA
* ** *
62624458 TTGCTACTGTATTGTTCTATTAAAAGCATAATTAA
1 TTGCTACTATATTGAACTATTATAAGCAT-ATTAA
62624493 ATACTATCGT
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
34 53 0.95
35 3 0.05
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.39
Consensus pattern (34 bp):
TTGCTACTATATTGAACTATTATAAGCATATTAA
Found at i:62625218 original size:25 final size:25
Alignment explanation
Indices: 62625190--62625258 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 25
62625180 TATATTGTTT
*
62625190 TATTTATTTTGTGGCATGAAACTCA
1 TATTTATTTTGTGGCATAAAACTCA
* * * *
62625215 TATTTAAGGTTTATAGCTTAAAACTCA
1 TATTT-A-TTTTGTGGCATAAAACTCA
62625242 TATTTATTTTGTGGCAT
1 TATTTATTTTGTGGCAT
62625259 TAGTTTTCTT
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
25 12 0.36
26 2 0.06
27 19 0.58
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.46
Consensus pattern (25 bp):
TATTTATTTTGTGGCATAAAACTCA
Found at i:62629663 original size:22 final size:22
Alignment explanation
Indices: 62629638--62629684 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
62629628 AATGCCTACT
62629638 TTCGTTGATTCAACACAATTCC
1 TTCGTTGATTCAACACAATTCC
62629660 TTCGTTGATTCAACACAATTCC
1 TTCGTTGATTCAACACAATTCC
62629682 TTC
1 TTC
62629685 ATGTGATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.38
Consensus pattern (22 bp):
TTCGTTGATTCAACACAATTCC
Found at i:62641529 original size:46 final size:44
Alignment explanation
Indices: 62641386--62641529 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
62641376 CCCGCCCATA
* *
62641386 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
62641435 --CGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAAATCC-T
62641478 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
62641525 AGTGA
1 AGTGA
62641530 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 2 0.03
46 31 0.40
47 26 0.34
48 6 0.08
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:62647467 original size:20 final size:20
Alignment explanation
Indices: 62647442--62647495 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
62647432 AACAGGGGTC
*
62647442 ACACACCCATGTGGTTTAGG
1 ACACACCCGTGTGGTTTAGG
62647462 ACACACCCGTGTGGTTTAGG
1 ACACACCCGTGTGGTTTAGG
62647482 ACACACCCGTGTGG
1 ACACACCCGTGTGG
62647496 GAAAGCCGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (20 bp):
ACACACCCGTGTGGTTTAGG
Found at i:62647506 original size:13 final size:13
Alignment explanation
Indices: 62647488--62647521 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
62647478 TAGGACACAC
62647488 CCGTGTGGGAAAG
1 CCGTGTGGGAAAG
*
62647501 CCGTGTGGGAAGG
1 CCGTGTGGGAAAG
62647514 CCGTGTGG
1 CCGTGTGG
62647522 TCAAACACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.18, G:0.50, T:0.18
Consensus pattern (13 bp):
CCGTGTGGGAAAG
Found at i:62654059 original size:18 final size:18
Alignment explanation
Indices: 62654036--62654072 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
62654026 ACTTGCATAT
62654036 TGTTTACTGTTACTGCAC
1 TGTTTACTGTTACTGCAC
*
62654054 TGTTTACTGTTATTGCAC
1 TGTTTACTGTTACTGCAC
62654072 T
1 T
62654073 ATTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (18 bp):
TGTTTACTGTTACTGCAC
Found at i:62654084 original size:18 final size:18
Alignment explanation
Indices: 62654038--62654086 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
62654028 TTGCATATTG
* * *
62654038 TTTACTGTTACTGCACTG
1 TTTACTATTATTGCACTA
*
62654056 TTTACTGTTATTGCACTA
1 TTTACTATTATTGCACTA
*
62654074 TTTTCTATTATTG
1 TTTACTATTATTG
62654087 TAATGGGCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.53
Consensus pattern (18 bp):
TTTACTATTATTGCACTA
Found at i:62657762 original size:57 final size:57
Alignment explanation
Indices: 62657701--62657816 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
62657691 CCAATTTTCC
62657701 TTTCCTCTCCTCGTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
1 TTTCCTCTCCTCGTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
*
62657758 TTTCCTCTCCTCTTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
1 TTTCCTCTCCTCGTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
62657815 TT
1 TT
62657817 ATTGCTAAGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.16, C:0.26, G:0.09, T:0.49
Consensus pattern (57 bp):
TTTCCTCTCCTCGTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
Found at i:62658785 original size:27 final size:27
Alignment explanation
Indices: 62658755--62658842 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
62658745 TAAATGATAG
62658755 AATGACTGTTTTGCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* * *
62658782 AATGACTATTTTGGCCTTATGTGGGAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* * *
62658809 AATAATTGTTTTGCCCTTATGAGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
62658836 AATGACT
1 AATGACT
62658843 AAAATGCCCC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (27 bp):
AATGACTGTTTTGCCCTTATGTGGTAA
Found at i:62659229 original size:18 final size:18
Alignment explanation
Indices: 62659206--62659242 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
62659196 GGACTTGCAT
62659206 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
*
62659224 ACTGTTTACTGTTACTGC
1 ACTGTTTACTATTACTGC
62659242 A
1 A
62659243 TTATTTTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.43
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:62659253 original size:18 final size:18
Alignment explanation
Indices: 62659210--62659260 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
62659200 TTGCATACTG
* *
62659210 TTTACTATTACTGCACTG
1 TTTACTGTTACTGCACTA
*
62659228 TTTACTGTTACTGCATTA
1 TTTACTGTTACTGCACTA
*
62659246 TTTTCTGTTACTGCA
1 TTTACTGTTACTGCA
62659261 ATGGGCCAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (18 bp):
TTTACTGTTACTGCACTA
Found at i:62673810 original size:40 final size:40
Alignment explanation
Indices: 62673728--62673948 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
62673718 TATTCGGATG
* * *
62673728 ATATCGGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
62673767 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
62673807 ATATCCGGGCTAAGTCCCAAAGGC-GTTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCT-A-TTGACT
* ** *
62673847 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
62673887 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
62673927 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
62673949 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
39 42 0.26
40 111 0.70
41 6 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:62683412 original size:28 final size:28
Alignment explanation
Indices: 62683323--62683414 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
62683313 TGGGAAGTAG
62683323 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
62683351 TTGAGCTTGATGAGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * * *
62683379 TAGGGCCTGATGGGACATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
62683407 TTGGGCCT
1 TTGGGCCT
62683415 AAAGGGGCCA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:62683760 original size:27 final size:26
Alignment explanation
Indices: 62683730--62684044 Score: 305
Period size: 27 Copynumber: 11.7 Consensus size: 26
62683720 TAATAGAGAG
*
62683730 AAATTAGCGAAATACCC-CCAGTTTGTA
1 AAATTA-CGAAATACCCTCGA-TTTGTA
* *
62683757 AAATTACTAAAGTACCC-CTAGTTTGTA
1 AAATTACGAAA-TACCCTCGA-TTTGTA
*
62683784 AAATTACTGAAATACCCCCGATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
62683811 AAATTACTGAAATACCCCCAATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
62683838 AAACTATTGAAATACCCTCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
62683865 AAATTATAGAAACACCCTCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
62683892 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
*
62683919 AAATTATCGAAATACCCTCGATATGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
*
62683946 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* * *
62683973 AAATTACCAAAACACCCCCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
62684000 AAATT-CTGGAAATACCCT-TATAGTGTA
1 AAATTAC--GAAATACCCTCGAT-TTGTA
62684027 AAATTACCGAAATACCCT
1 AAATTA-CGAAATACCCT
62684045 TGTACTGTAA
Statistics
Matches: 251, Mismatches: 26, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
25 1 0.00
26 7 0.03
27 236 0.94
28 6 0.02
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGATTTGTA
Found at i:62684057 original size:81 final size:81
Alignment explanation
Indices: 62683730--62684044 Score: 370
Period size: 81 Copynumber: 3.9 Consensus size: 81
62683720 TAATAGAGAG
* * * *
62683730 AAATTAGCGAAATACCCCC-AGTTTGTAAAATTA-CTAAAGTACCC-CTAGTTTGTAAAATTACT
1 AAATTACCGAAATACCCCCGA-TTTGTAAAATTATCGAAA-TACCCTCGA-TATGTAAAATTACT
*
62683792 GAAATACCCCCGATTTGTA
63 GAAATACCCTCGATTTGTA
* * * * *
62683811 AAATTACTGAAATACCCCCAATTTGTAAAACTATTGAAATACCCTCGATTTGTAAAATTA-TAGA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATATGTAAAATTACT-GA
*
62683875 AACACCCTCGATTTGTA
65 AATACCCTCGATTTGTA
* *
62683892 AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATATGTAAAATTACTGAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATATGTAAAATTACTGAA
*
62683957 ATACCCTCAATTTGTA
66 ATACCCTCGATTTGTA
* * * * * *
62683973 AAATTACCAAAACACCCCCGATTTGTAAAATTCTGGAAATACCCT-TATAGTGTAAAATTACCGA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATA-TGTAAAATTACTGA
62684037 AATACCCT
65 AATACCCT
62684045 TGTACTGTAA
Statistics
Matches: 203, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
80 4 0.02
81 192 0.95
82 7 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATATGTAAAATTACTGAA
ATACCCTCGATTTGTA
Found at i:62684068 original size:27 final size:27
Alignment explanation
Indices: 62684008--62684087 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
62683998 TAAAATTCTG
* *
62684008 GAAATACCCTTATAGTGTAAAATTACC
1 GAAATACCCTTGTAGTGTAAAATGACC
*
62684035 GAAATACCCTTGTACTGTAAAATGACC
1 GAAATACCCTTGTAGTGTAAAATGACC
* * * *
62684062 TACATACCCCTGTAGGGTAAAATGAC
1 GAAATACCCTTGTAGTGTAAAATGAC
62684088 TGTTTTGCCC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (27 bp):
GAAATACCCTTGTAGTGTAAAATGACC
Found at i:62684665 original size:27 final size:27
Alignment explanation
Indices: 62684606--62684665 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
62684596 AGATGGTCTA
* *
62684606 GGCCCAATTGATTCTGTTATGGGCTGT
1 GGCCCAAATGATTCTGTAATGGGCTGT
* * *
62684633 GACCCAAATGATTTTGTAATGGGCTTT
1 GGCCCAAATGATTCTGTAATGGGCTGT
62684660 GGCCCA
1 GGCCCA
62684666 CGTATGCTCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (27 bp):
GGCCCAAATGATTCTGTAATGGGCTGT
Found at i:62704892 original size:16 final size:18
Alignment explanation
Indices: 62704855--62704902 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
62704845 AAGTAATTTC
62704855 AAAATATAAATAAAGATA
1 AAAATATAAATAAAGATA
62704873 AAAATAATAAA-AAAG-TA
1 AAAAT-ATAAATAAAGATA
62704890 AAAATATATAATA
1 AAAATATA-AATA
62704903 GGTGTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.11
17 9 0.33
18 10 0.37
19 5 0.19
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAATATAAATAAAGATA
Found at i:62708884 original size:14 final size:13
Alignment explanation
Indices: 62708856--62708892 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
62708846 ATCCTCAAAT
62708856 ATTAA-AACAATA
1 ATTAAGAACAATA
62708868 ATTAAGAACACATA
1 ATTAAGAACA-ATA
62708882 ATTAAGAACAA
1 ATTAAGAACAA
62708893 GTCAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:62716800 original size:30 final size:30
Alignment explanation
Indices: 62716766--62716924 Score: 97
Period size: 30 Copynumber: 5.3 Consensus size: 30
62716756 TTGTTGACAC
** *
62716766 ATCCCTTTTTGTAATTTGATAACCGAAGTT
1 ATCCCTTTTCATAATTTGATAACCGAAGAT
* * * *
62716796 ATCCCTTTTCATAATTCGACAGCTGAAGAT
1 ATCCCTTTTCATAATTTGATAACCGAAGAT
*** ** *
62716826 ATCCCTTTTCATAATTTGATGGTC-ATCACC
1 ATCCCTTTTCATAATTTGATAACCGAAGA-T
*** * *
62716856 ATCCCTTTTCATAATTTGATGGTCGTCA-CT
1 ATCCCTTTTCATAATTTGATAACCG-AAGAT
** *
62716886 ATCCCTTTTCATAATTTGATAGTCGAAGCT
1 ATCCCTTTTCATAATTTGATAACCGAAGAT
62716916 ATCCCTTTT
1 ATCCCTTTT
62716925 TATTGACTGA
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
29 3 0.03
30 101 0.97
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAACCGAAGAT
Found at i:62716936 original size:60 final size:59
Alignment explanation
Indices: 62716825--62717019 Score: 173
Period size: 60 Copynumber: 3.3 Consensus size: 59
62716815 CAGCTGAAGA
* *
62716825 TATCCCTTTTCATAATTTGATGGTC-ATCACCATCCCTTTTCA-TAATTTGATGGTCGTCAC
1 TATCCCTTTTCATAATTTGATGGTCGA--ACCATCCCTTTTCATTGA-CTGATGGTCGTCAC
* * * * ***
62716885 TATCCCTTTTCATAATTTGATAGTCGAAGCTATCCCTTTTTATTGACTGATGGCCAAAGAC
1 TATCCCTTTTCATAATTTGATGGTCGAA-CCATCCCTTTTCATTGACTGATGGTC-GTCAC
** ** *
62716946 -ATCCCTTTTCATAGCTCAATGGTCGCCACCATCCCTTTTCATTG-CTGATGGTCGTCAC
1 TATCCCTTTTCATAATTTGATGGTCG-AACCATCCCTTTTCATTGACTGATGGTCGTCAC
*
62717004 CATCCCTTTTCATAAT
1 TATCCCTTTTCATAAT
62717020 CGATAACTGA
Statistics
Matches: 106, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
58 2 0.02
59 22 0.21
60 76 0.72
61 6 0.06
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (59 bp):
TATCCCTTTTCATAATTTGATGGTCGAACCATCCCTTTTCATTGACTGATGGTCGTCAC
Found at i:62716936 original size:90 final size:90
Alignment explanation
Indices: 62716795--62716987 Score: 203
Period size: 90 Copynumber: 2.1 Consensus size: 90
62716785 TAACCGAAGT
* * * *
62716795 TATCCCTTTTCATAATTCGACAGCTGAAGATATCCCTTTTCATAATTTGATGGTCATCA-CCATC
1 TATCCCTTTTCATAATTCGACAGCTGAAGATATCCCTTTTCATAATCTGATGGCCA-AAGACATC
* ** *
62716859 CCTTTTCATAATTTGATGGTCGTCAC
65 CCTTTTCATAACTCAATGGTCGCCAC
* * * * *
62716885 TATCCCTTTTCATAATTTGATAG-TCGAAGCTATCCCTTTTTATTGA-CTGATGGCCAAAGACAT
1 TATCCCTTTTCATAATTCGACAGCT-GAAGATATCCCTTTTCA-TAATCTGATGGCCAAAGACAT
*
62716948 CCCTTTTCATAGCTCAATGGTCGCCAC
64 CCCTTTTCATAACTCAATGGTCGCCAC
*
62716975 CATCCCTTTTCAT
1 TATCCCTTTTCAT
62716988 TGCTGATGGT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
89 2 0.02
90 81 0.95
91 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (90 bp):
TATCCCTTTTCATAATTCGACAGCTGAAGATATCCCTTTTCATAATCTGATGGCCAAAGACATCC
CTTTTCATAACTCAATGGTCGCCAC
Found at i:62716979 original size:30 final size:29
Alignment explanation
Indices: 62716945--62717017 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
62716935 TGGCCAAAGA
62716945 CATCCCTTTTCATAGCTCAATGGTCGCCAC
1 CATCCCTTTTCATAGCT-AATGGTCGCCAC
* * *
62716975 CATCCCTTTTCATTGCTGATGGTCGTCAC
1 CATCCCTTTTCATAGCTAATGGTCGCCAC
62717004 CATCCCTTTTCATA
1 CATCCCTTTTCATA
62717018 ATCGATAACT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 23 0.59
30 16 0.41
ACGTcount: A:0.18, C:0.34, G:0.12, T:0.36
Consensus pattern (29 bp):
CATCCCTTTTCATAGCTAATGGTCGCCAC
Found at i:62724323 original size:20 final size:20
Alignment explanation
Indices: 62724294--62724347 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
62724284 AACAAGGGTC
62724294 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
62724314 ACACGTCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
62724334 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
62724348 GCAGGCCGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.30, G:0.39, T:0.20
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:62725411 original size:24 final size:22
Alignment explanation
Indices: 62725360--62725403 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
62725350 TATGAGTATT
62725360 CACTTTTCAAGCATATATTCTA
1 CACTTTTCAAGCATATATTCTA
62725382 CACTTTTCAAGCATATATTCTA
1 CACTTTTCAAGCATATATTCTA
62725404 ACATCTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.41
Consensus pattern (22 bp):
CACTTTTCAAGCATATATTCTA
Found at i:62727603 original size:43 final size:42
Alignment explanation
Indices: 62727551--62727631 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
62727541 TTGCATGTAA
* *
62727551 TCTCGTATCGATGCTAATAGCCCAGCTATGGTCTTACACAGAT
1 TCTCATATCGATGC-AATAGCCCAGATATGGTCTTACACAGAT
* *
62727594 TCTCATATCGATGCCATATCCCAGATATGGTCTTACAC
1 TCTCATATCGATGCAATAGCCCAGATATGGTCTTACAC
62727632 GTAATCTCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 21 0.62
43 13 0.38
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (42 bp):
TCTCATATCGATGCAATAGCCCAGATATGGTCTTACACAGAT
Found at i:62727627 original size:42 final size:43
Alignment explanation
Indices: 62727519--62727640 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 43
62727509 TACCATACCA
* * * *
62727519 ATGCCATATCCCAGATATAGTCTTGCA-TGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAGTAATCTCATATCG
* * * *
62727561 ATGCTAATAGCCCAGCTATGGTCTTACACAG-ATTCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACAGTAATCTCATATCG
62727604 ATGCCATATCCCAGATATGGTCTTACAC-GTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACAGTAATCTCA
62727641 GTAATCCTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 31 0.48
43 32 0.49
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTACACAGTAATCTCATATCG
Found at i:62729201 original size:42 final size:42
Alignment explanation
Indices: 62729081--62729201 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
62729071 TACTGTACCA
* *
62729081 ATGCCA-ATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
62729122 ATGCCAATAGCCCAGCTATGGTCTTACACG-AATTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
62729165 ATGCCATATCCCAGATATGGTCTTATACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
62729202 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
41 5 0.07
42 29 0.43
43 34 0.50
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:62741253 original size:42 final size:41
Alignment explanation
Indices: 62741207--62741361 Score: 143
Period size: 42 Copynumber: 3.7 Consensus size: 41
62741197 GCCTTGTGTT
62741207 GGTGTATTAAATAGGGCTTTATTGCCTAGCAGGCTTTATGCC
1 GGTGTATTAAATA-GGCTTTATTGCCTAGCAGGCTTTATGCC
***
62741249 GGTGTATTTTTTTAGGCTTTATTGCCTAGCAGGCTTTATGCC
1 GGTGTA-TTAAATAGGCTTTATTGCCTAGCAGGCTTTATGCC
* ** * * * *
62741291 AGTGTATTATGTCAGGC-CTATTGCTTAGCAGGTTTTGTGCC
1 GGTGTATTAAAT-AGGCTTTATTGCCTAGCAGGCTTTATGCC
* * *
62741332 AGTGTATTATACTAGGCTTTA-TGCCCAGCA
1 GGTGTATTA-AATAGGCTTTATTGCCTAGCA
62741362 AATTTTATGT
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
41 44 0.47
42 46 0.49
43 4 0.04
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (41 bp):
GGTGTATTAAATAGGCTTTATTGCCTAGCAGGCTTTATGCC
Found at i:62741332 original size:41 final size:42
Alignment explanation
Indices: 62741221--62741341 Score: 154
Period size: 42 Copynumber: 2.9 Consensus size: 42
62741211 TATTAAATAG
* * * * *
62741221 GGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTTTTTTA
1 GGCTCTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCA
*
62741263 GGCTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCA
1 GGCTCTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCA
* * *
62741305 GGC-CTATTGCTTAGCAGGTTTTGTGCCAGTGTATTAT
1 GGCTCTATTGCCTAGCAGGCTTTATGCCAGTGTATTAT
62741342 ACTAGGCTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 30 0.42
42 41 0.58
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.41
Consensus pattern (42 bp):
GGCTCTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCA
Found at i:62749038 original size:40 final size:40
Alignment explanation
Indices: 62748968--62749147 Score: 199
Period size: 40 Copynumber: 4.5 Consensus size: 40
62748958 CTCGTTCAAA
*
62748968 TGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAT
* *
62749007 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAT
* *
62749047 TGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAT
* * * * *
62749086 TGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA-
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAT
*
62749126 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
62749148 CATCATTCAA
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 39 0.33
40 66 0.55
41 12 0.10
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAT
Found at i:62749063 original size:79 final size:80
Alignment explanation
Indices: 62748964--62749147 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 80
62748954 GCTACTCGTT
* * *
62748964 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAATTGCCTTC-GGATCTTAACCCG
* *
62749027 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
62749043 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAATTGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAATTGCCTTCGGATCTTAACCCGGA
* *
62749108 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
62749123 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
62749148 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 3 0.03
79 68 0.75
80 20 0.22
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAATTGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:62760667 original size:40 final size:39
Alignment explanation
Indices: 62760583--62760767 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
62760573 TCGAATGATG
* * *
62760583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62760623 TCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62760663 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
62760702 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
62760743 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
62760768 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62760719 original size:79 final size:81
Alignment explanation
Indices: 62760583--62760765 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
62760573 TCGAATGATG
* *
62760583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
62760647 TGTACGAGTTACTA-A
66 TGTACGAGTTACTATA
* * **
62760662 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
62760724 TTTGTGCGAGTTACTATA
64 TTTGTACGAGTTACTATA
* * *
62760742 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62760766 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGTTACTATA
Found at i:62760789 original size:79 final size:77
Alignment explanation
Indices: 62760617--62760800 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
62760607 GTGCTAAGTG
* * *
62760617 ACTATATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTACGAGTTACTAATACCAGGCTAAGCCCGAAGG
**
62760682 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * *
62760696 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTACGAGTTACTAAT-ACCAGGCTAAG-CCCGAA
*
62760760 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
62760775 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
62760801 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 29 0.33
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTACGAGTTACTAATACCAGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:62768717 original size:40 final size:40
Alignment explanation
Indices: 62768633--62768817 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
62768623 TCGAATGATG
* *
62768633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
62768672 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
62768713 TCCGGGCTAAG-CCCGAAGGCATTAGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
62768752 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
62768791 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62768818 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:62768769 original size:79 final size:81
Alignment explanation
Indices: 62768633--62768815 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
62768623 TCGAATGATG
* *
62768633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTAGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
62768697 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
62768712 TTCCGGGCTAAG-CCCGAAGGCATTAGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTAGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
62768774 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
62768792 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62768816 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTAGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:62768839 original size:79 final size:78
Alignment explanation
Indices: 62768634--62768850 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
62768624 CGAATGATGT
* *
62768634 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
62768697 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
62768714 CCGGGCTAAG-CCCGAAGGCATTAGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
62768777 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
62768793 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
62768851 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:62771414 original size:30 final size:30
Alignment explanation
Indices: 62771378--62771441 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
62771368 ATAGAAAGGA
62771378 CTAAATCACGTAAAGCGTAAAACTTAAGTT
1 CTAAATCACGTAAAGCGTAAAACTTAAGTT
62771408 CTAAATCACGTAAAGCGTAAAACTTAAGTT
1 CTAAATCACGTAAAGCGTAAAACTTAAGTT
62771438 CTAA
1 CTAA
62771442 TAGCTCAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (30 bp):
CTAAATCACGTAAAGCGTAAAACTTAAGTT
Found at i:62772433 original size:40 final size:40
Alignment explanation
Indices: 62772373--62772486 Score: 156
Period size: 40 Copynumber: 2.9 Consensus size: 40
62772363 TTATTTGTGG
* *
62772373 CACTTAGTGTGCAATACGACATAGCTTCGTCTATATATGA
1 CACTTAGTGTGCAATTCGACATAGCTTCGACTATATATGA
* * *
62772413 CACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATGG
1 CACTTAGTGTGCAATTCGACATAGCTTCGACTATATATGA
* * *
62772453 CACTTAGTGTGCTATTTGAGATAGCTTCGACTAT
1 CACTTAGTGTGCAATTCGACATAGCTTCGACTAT
62772487 GTACGGTACT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (40 bp):
CACTTAGTGTGCAATTCGACATAGCTTCGACTATATATGA
Found at i:62772498 original size:40 final size:40
Alignment explanation
Indices: 62772371--62772500 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
62772361 GGTTATTTGT
* * * *
62772371 GGCACTTAGTGTGCAATACGACATAGCTTCGTCTATATAT
1 GGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATAC
* * *
62772411 GACACTTAGTGTGCGATTCGACATAGCTTCGGCTATATAT
1 GGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATAC
* * * *
62772451 GGCACTTAGTGTGCTATTTGAGATAGCTTCGACTATGTAC
1 GGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATAC
*
62772491 GGTACTTAGT
1 GGCACTTAGT
62772501 ATATGAGATA
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (40 bp):
GGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATAC
Found at i:62774509 original size:93 final size:93
Alignment explanation
Indices: 62774350--62774520 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62774340 CCCATAAGCG
* * * *
62774350 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
62774415 GAGTTCAGATGCCTAGTTACATCTCACA
66 GAGTTCAGATGCCTAGTTACATCTCACA
*
62774443 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
62774508 GAGTTCGGATGCC
66 GAGTTCAGATGCC
62774521 CAAACATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATCTCACA
Found at i:62774510 original size:46 final size:46
Alignment explanation
Indices: 62774341--62774516 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
62774331 TGTAACCCGC
* * * * *
62774341 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
62774387 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCAT
*
62774437 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
62774480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
62774517 TGCCCAAACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 2 0.02
46 59 0.55
47 26 0.24
49 2 0.02
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62774535 original size:46 final size:45
Alignment explanation
Indices: 62774392--62774535 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
62774382 CGCATCCATG
* *
62774392 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATCT
** * * * *
62774439 CA-CAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCT
*
62774485 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACAT-CT
62774531 AGTGA
1 AGTGA
62774536 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 32 0.42
47 30 0.39
48 1 0.01
49 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCT
Found at i:62789586 original size:16 final size:16
Alignment explanation
Indices: 62789567--62789597 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62789557 CTTCTTCACT
62789567 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
62789583 TACTTACTTACTTAA
1 TACTCACTTACTTAA
62789598 TAAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:62789603 original size:20 final size:20
Alignment explanation
Indices: 62789564--62789603 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62789554 AAACTTCTTC
* *
62789564 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATAAAAT
*
62789584 ACTTACTTACTTAATAAAAT
1 ACTTACTCACTTAATAAAAT
62789604 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATAAAAT
Found at i:62789979 original size:55 final size:53
Alignment explanation
Indices: 62789789--62790043 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
62789779 ACGCGGGTAC
* * * * *
62789789 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
62789838 CTTACCATTGCCATGTTTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAA
* *
62789891 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* * ***
62789946 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
62789999 CCTTACCAATTTCCATGCCTTAGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGGCATGGTCTTACATGGGATCCTT
62790044 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:62789980 original size:108 final size:110
Alignment explanation
Indices: 62789836--62790036 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
62789826 ATCCTTTTGA
* * * *
62789836 AACTTACCATTGCCATGTTTTGGCATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
62789899 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
62789944 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
62790009 TTCCATGCCTTAGCATGGTCTTACATGG
66 TGCCATGCCTTAGCATGGTCTTACATGG
62790037 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 7 0.09
110 26 0.32
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:62791712 original size:40 final size:41
Alignment explanation
Indices: 62791668--62791884 Score: 313
Period size: 40 Copynumber: 5.4 Consensus size: 41
62791658 CACTCGAATA
*
62791668 CCTTCGGGA-TATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACT-TAGCCCGGAAACTAGTAACTCGCACAAATG
62791708 CCTTCGGGACTTAGCCC-GAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAACTAGTAACTCGCACAAATG
62791748 CCTTCGGGACTTAGCCC-GAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAACTAGTAACTCGCACAAATG
* *
62791788 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAACTAGTAACTCGCACAAATG
* ** *
62791828 CCTTCGGG-CTTAGCCCGG-AATTAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAACTAGTAACTCGCACAAATG
62791867 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
62791885 ATTATCAATC
Statistics
Matches: 164, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 35 0.21
40 124 0.76
41 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGAAACTAGTAACTCGCACAAATG
Found at i:62794131 original size:40 final size:40
Alignment explanation
Indices: 62794076--62794309 Score: 375
Period size: 40 Copynumber: 5.9 Consensus size: 40
62794066 GCATGAGCAT
62794076 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
62794116 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
62794156 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
62794196 TTGATATATCCGGGCTAAGACCCGAAGGAAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
62794236 TTGATATATCCGGGCTAAGA-CCGAA-GCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
62794274 TTGCTATA-CCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
62794310 TTGTGGTTAT
Statistics
Matches: 179, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
37 10 0.06
38 20 0.11
39 13 0.07
40 136 0.76
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:62802361 original size:40 final size:40
Alignment explanation
Indices: 62802306--62802622 Score: 544
Period size: 40 Copynumber: 7.9 Consensus size: 40
62802296 GCATGAGCAT
*
62802306 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
62802346 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
62802386 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
62802426 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
62802466 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
62802506 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
62802546 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
62802586 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
62802623 TTGCGGTTAT
Statistics
Matches: 262, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 262 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:62808386 original size:37 final size:37
Alignment explanation
Indices: 62808336--62808414 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
62808326 TTATTACGAA
* * *
62808336 GTCTTACCAGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
* *
62808373 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
62808410 GTCTT
1 GTCTT
62808415 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
Found at i:62808609 original size:49 final size:49
Alignment explanation
Indices: 62808532--62808899 Score: 635
Period size: 47 Copynumber: 7.7 Consensus size: 49
62808522 GCCCTTCGGG
*
62808532 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62808582 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62808631 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
62808678 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
62808725 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
62808774 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62808821 ACTTTTACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
62808868 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
62808900 ATACTATCAT
Statistics
Matches: 311, Mismatches: 3, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
47 178 0.57
49 129 0.41
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
Done.