Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 187 of 373
Found at i:62808797 original size:143 final size:143
Alignment explanation
Indices: 62808532--62808899 Score: 664
Period size: 143 Copynumber: 2.6 Consensus size: 143
62808522 GCCCTTCGGG
*
62808532 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--ACTTTCACATTCATC
62808597 ACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62808662 CCTATCACATATATAC
128 CCTATCACATATATAC
62808678 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
* *
62808743 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCT
62808808 ATCACATATATAC
131 ATCACATATATAC
* *
62808821 ACTTTTACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
62808886 TCGGCCATTAGGCC
66 TCGGCCATTAGGCC
62808900 ATACTATCAT
Statistics
Matches: 217, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
143 171 0.79
145 42 0.19
146 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
TCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCT
ATCACATATATAC
Found at i:62820709 original size:48 final size:48
Alignment explanation
Indices: 62820555--62820702 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 48
62820545 ATATATACAC
* * * **
62820555 ATCTCATACATATTTCACATCAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATATAT
** *
62820603 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATATAT
*
62820651 ATCTCATACATATTTTACATTAGCCATTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATATAT
62820699 ATCT
1 ATCT
62820703 TGTACATCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATATAT
Found at i:62822017 original size:26 final size:27
Alignment explanation
Indices: 62821972--62822024 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
62821962 TTAAATTCTG
* *
62821972 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
62821999 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
62822025 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:62826737 original size:47 final size:47
Alignment explanation
Indices: 62826560--62826775 Score: 158
Period size: 47 Copynumber: 4.6 Consensus size: 47
62826550 TGTGGACCAA
* * * *
62826560 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGATGTA-AGCCAG
* * * **
62826608 TGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAAACATAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCG-GCTCGAGATGTAAGCCAG
* * *
62826654 TGTAAGA--ATGTCCGGGACAT-GCATCGGCTACAAGATG-ATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGATGTA-AGCCAG
* * * * *
62826699 TGTAAGACCATGTTTGGGACATGGCATCTGCTTGAGATGTGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGTAAGCCAG
* * *
62826746 TATAAGACCGTGTATGGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
62826776 TACCTTACCC
Statistics
Matches: 133, Mismatches: 27, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
44 3 0.02
45 32 0.24
46 22 0.17
47 61 0.46
48 15 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGTAAGCCAG
Found at i:62841183 original size:77 final size:77
Alignment explanation
Indices: 62841056--62841209 Score: 263
Period size: 77 Copynumber: 2.0 Consensus size: 77
62841046 AGCTTTTTGG
* * *
62841056 ATACCCGCAAGCAATGCCCTATATATACGACACATAAGATTAAGGCCATAATCATATGGAAAAAC
1 ATACCCGCAAACAATGCCCTATATATACCACACATAAGATTAAGGCCATAATCATATAGAAAAAC
*
62841121 TTTGGGAACTTC
66 TGTGGGAACTTC
62841133 ATACCCGCAAACAATGCCCTATATATACCACACATAAGATTAAGGCCATAATCATATAGAAAAAC
1 ATACCCGCAAACAATGCCCTATATATACCACACATAAGATTAAGGCCATAATCATATAGAAAAAC
*
62841198 TGTGGGGACTTC
66 TGTGGGAACTTC
62841210 TAGTGTAATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (77 bp):
ATACCCGCAAACAATGCCCTATATATACCACACATAAGATTAAGGCCATAATCATATAGAAAAAC
TGTGGGAACTTC
Found at i:62844072 original size:41 final size:42
Alignment explanation
Indices: 62844022--62844130 Score: 130
Period size: 41 Copynumber: 2.6 Consensus size: 42
62844012 TTTGAGATTA
* *
62844022 CGTGTAAGACCATATCTGGGATATGACATCGATATGAGA-CT
1 CGTGTAAGACCATACCTGGGATATGACATCGATATGAGATCC
* * * * *
62844063 CGTGTAAGACCATAGCTAGGCTACTGGCATCGATATGGGATCC
1 CGTGTAAGACCATACCTGGGATA-TGACATCGATATGAGATCC
*
62844106 CATGTAAGACCATACCTGGGATATG
1 CGTGTAAGACCATACCTGGGATATG
62844131 GCATTGGTAT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
41 20 0.36
42 16 0.29
43 20 0.36
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (42 bp):
CGTGTAAGACCATACCTGGGATATGACATCGATATGAGATCC
Found at i:62844133 original size:42 final size:41
Alignment explanation
Indices: 62844024--62844134 Score: 132
Period size: 42 Copynumber: 2.7 Consensus size: 41
62844014 TGAGATTACG
* * * *
62844024 TGTAAGACCATATCTGGGATATGACATCGATATGAGACTCG
1 TGTAAGACCATACCTGGGATATGGCATCGATATGAGACCCA
* * * *
62844065 TGTAAGACCATAGCTAGGCTACTGGCATCGATATGGGATCCCA
1 TGTAAGACCATACCTGGGATA-TGGCATCGATATGAGA-CCCA
62844108 TGTAAGACCATACCTGGGATATGGCAT
1 TGTAAGACCATACCTGGGATATGGCAT
62844135 TGGTATGGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 18 0.31
42 20 0.34
43 20 0.34
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (41 bp):
TGTAAGACCATACCTGGGATATGGCATCGATATGAGACCCA
Found at i:62844347 original size:46 final size:46
Alignment explanation
Indices: 62844297--62844386 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
62844287 TCGATATGTG
*
62844297 ATGAATCCCTCGGTAAGGTTATGATTGTACAAGTTATGATACTATA
1 ATGAATCACTCGGTAAGGTTATGATTGTACAAGTTATGATACTATA
* * *
62844343 ATGAATCATTTGGTAAGGTTATGATTGTGCAAGTTATGATACTA
1 ATGAATCACTCGGTAAGGTTATGATTGTACAAGTTATGATACTA
62844387 AGGTTATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (46 bp):
ATGAATCACTCGGTAAGGTTATGATTGTACAAGTTATGATACTATA
Found at i:62850660 original size:29 final size:29
Alignment explanation
Indices: 62850597--62850704 Score: 137
Period size: 29 Copynumber: 3.8 Consensus size: 29
62850587 TTCACATACC
* * *
62850597 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
** *
62850625 TCCATATGGCCCATTAGGCCCAAATCACC
1 TGTATATGGCCCATTAGGCCCAAATCACA
62850654 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
62850683 TTTATATGGCCCATTACGCCCA
1 TGTATATGGCCCATTAGGCCCA
62850705 GTCACATTCA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 17 0.25
29 51 0.75
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:62855917 original size:67 final size:65
Alignment explanation
Indices: 62855800--62855953 Score: 197
Period size: 67 Copynumber: 2.4 Consensus size: 65
62855790 AGACATTATG
* * * * *
62855800 ATGTAGCTAGGTCACATGGGT-GATACAATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGAGATAA
* *
62855864 ATGTAGCTAGGTCACATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAA-TG-AGGACACCATGTAGACAAGAGAGCTACGAGAT
62855929 AA
64 AA
62855931 ACTG--GCTAGGTCACATGGGTGGT
1 A-TGTAGCTAGGTCACATGGGTGGT
62855954 ACTAAGTGTT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
64 20 0.26
65 5 0.06
66 20 0.26
67 31 0.40
68 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (65 bp):
ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:62862549 original size:26 final size:26
Alignment explanation
Indices: 62862520--62862574 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
62862510 GGAAACAGAC
62862520 TGGGGCATATTTGAGGTGCGGTTCTA
1 TGGGGCATATTTGAGGTGCGGTTCTA
*
62862546 TGGGGCATGTTTGAGGTGCGGTTCTA
1 TGGGGCATATTTGAGGTGCGGTTCTA
62862572 TGG
1 TGG
62862575 AGCACCGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.13, C:0.11, G:0.42, T:0.35
Consensus pattern (26 bp):
TGGGGCATATTTGAGGTGCGGTTCTA
Found at i:62875160 original size:27 final size:27
Alignment explanation
Indices: 62875036--62875166 Score: 181
Period size: 27 Copynumber: 4.8 Consensus size: 27
62875026 TAGGGAAAAT
* *
62875036 CAGTCATTTTACCTTACAGGGGTGTTA
1 CAGTCATTTTACCTTATAGGGGTATTA
* *
62875063 CAGTCATTTTACCTTACAGGGGTATCA
1 CAGTCATTTTACCTTATAGGGGTATTA
*
62875090 CAGTCATTTTACCGTATAGGGGTATTA
1 CAGTCATTTTACCTTATAGGGGTATTA
* *
62875117 CAGTTATTTTACCTTATAGGGGTATTT
1 CAGTCATTTTACCTTATAGGGGTATTA
*
62875144 CGGTCATTTTACCTTATAAGGGG
1 CAGTCATTTTACCTTAT-AGGGG
62875167 AAAATCGTCA
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 88 0.95
28 5 0.05
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (27 bp):
CAGTCATTTTACCTTATAGGGGTATTA
Found at i:62875176 original size:27 final size:27
Alignment explanation
Indices: 62875028--62875181 Score: 82
Period size: 27 Copynumber: 5.7 Consensus size: 27
62875018 ACACATTGTA
* *
62875028 GGGAAAATCAGTCATTTTACCTTACAG
1 GGGAAAATCGGTCATTTTACCTTATAG
*** * *
62875055 GGG-TGTTACAGTCATTTTACCTTACAG
1 GGGAAAAT-CGGTCATTTTACCTTATAG
** * *
62875082 GGGTATCA-CAGTCATTTTACCGTATAG
1 GGG-AAAATCGGTCATTTTACCTTATAG
* * * *
62875109 GGG-TATTACAGTTATTTTACCTTATAG
1 GGGAAAAT-CGGTCATTTTACCTTATAG
* **
62875136 GGGTATTTCGGTCATTTTACCTTATAAG
1 GGGAAAATCGGTCATTTTACCTTAT-AG
62875164 GGGAAAATC-GTCATTTTA
1 GGGAAAATCGGTCATTTTA
62875182 TCACATAAGG
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 89 0.87
28 10 0.10
29 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGAAAATCGGTCATTTTACCTTATAG
Found at i:62875180 original size:54 final size:54
Alignment explanation
Indices: 62875036--62875181 Score: 143
Period size: 54 Copynumber: 2.7 Consensus size: 54
62875026 TAGGGAAAAT
* * ***
62875036 CAGTCATTTTACCTTACAGGGGTGTTACAGTCATTTTACCTTACAGGGGTATCA
1 CAGTCATTTTACCGTATAGGGGAAATACAGTCATTTTACCTTACAGGGGTATCA
* * * * **
62875090 CAGTCATTTTACCGTATAGGGGTATTACAGTTATTTTACCTTATAGGGGTATTT
1 CAGTCATTTTACCGTATAGGGGAAATACAGTCATTTTACCTTACAGGGGTATCA
* *
62875144 CGGTCATTTTACCTTATAAGGGGAAA-ATC-GTCATTTTA
1 CAGTCATTTTACCGTAT-AGGGGAAATA-CAGTCATTTTA
62875182 TCACATAAGG
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 71 0.91
55 7 0.09
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.38
Consensus pattern (54 bp):
CAGTCATTTTACCGTATAGGGGAAATACAGTCATTTTACCTTACAGGGGTATCA
Found at i:62878319 original size:51 final size:50
Alignment explanation
Indices: 62878242--62878419 Score: 223
Period size: 52 Copynumber: 3.5 Consensus size: 50
62878232 CGGATACTCG
** * *
62878242 GTGGCCTGAACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACAAAGCTACCTTCTTCACAAA
* * * *
62878293 GTGGCCTTCACATAGTACCACTCTTGTGAAAAAATCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-ACAAAGCTA-CCTTCTTCACAAA
* *
62878345 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTACCTTCTTCACAAA
*
62878394 GTAGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
62878420 AGTCACTAGT
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
49 34 0.31
50 1 0.01
51 37 0.33
52 39 0.35
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTACCTTCTTCACAAA
Found at i:62878407 original size:49 final size:50
Alignment explanation
Indices: 62878242--62878419 Score: 232
Period size: 51 Copynumber: 3.5 Consensus size: 50
62878232 CGGATACTCG
** * * *
62878242 GTGGCCTGAACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACAAAGCTATCTTCTTCACAAA
* * *
62878293 GTGGCCTTCACATAGTACCACTCTTGTGAAAAAATCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-ACAAAGCTATC-TTCTTCACAAA
*
62878345 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTATCTTCTTCACAAA
*
62878394 GTAGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
62878420 AGTCACTAGT
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 34 0.30
50 1 0.01
51 40 0.35
52 38 0.34
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACAAAGCTATCTTCTTCACAAA
Found at i:62886686 original size:43 final size:42
Alignment explanation
Indices: 62886596--62886703 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 42
62886586 TGAGATTACG
* *
62886596 TGTAAGACCATATCTGGGATATGACATCTATATGAAACTTCA
1 TGTAAGACCATATCTGGGATATGACATCGATATGAAACTCCA
* * * *
62886638 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGA-TCCGA
1 TGTAAGACCATATCTGGGATA-TGACATCGATATGAAACTCC-A
62886681 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
62886704 GAATTGGTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 23 0.41
43 33 0.59
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAAACTCCA
Found at i:62894312 original size:27 final size:26
Alignment explanation
Indices: 62894274--62894343 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
62894264 TGTTCCAACC
* *
62894274 CACAGCTCGTGTGAGCAGGCCCATTTT
1 CACAGCTTGTGTGAGCAGACCC-TTTT
* *
62894301 CACAGCTTGTGTGAGCATACTCTTTT
1 CACAGCTTGTGTGAGCAGACCCTTTT
*
62894327 CATAGCTTGTGTGAGCA
1 CACAGCTTGTGTGAGCA
62894344 TATTGTAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (26 bp):
CACAGCTTGTGTGAGCAGACCCTTTT
Found at i:62903995 original size:42 final size:43
Alignment explanation
Indices: 62903884--62904021 Score: 106
Period size: 42 Copynumber: 3.2 Consensus size: 43
62903874 ATGTTTTCAG
* * *
62903884 GTAAGACCACATCT-GAGAC-GTTGGCATTGACTTATGATTTACGT
1 GTAAGACCACATCTGGA-ACAG-TGGCATCGTCCT-TGATTTACGT
* *
62903928 GTAAGACCACATCTGGCACATTGGCATCGTCCTTGATTT-CGT
1 GTAAGACCACATCTGGAACAGTGGCATCGTCCTTGATTTACGT
* * ** *
62903970 GTAGGACC-CTATCTGGAATAGTGGCATCGATATTTGA-TTACAT
1 GTAAGACCAC-ATCTGGAACAGTGGCATCG-TCCTTGATTTACGT
62904013 GTAAGACCA
1 GTAAGACCA
62904022 TGTCTGGAGC
Statistics
Matches: 75, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.37
43 20 0.27
44 25 0.33
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (43 bp):
GTAAGACCACATCTGGAACAGTGGCATCGTCCTTGATTTACGT
Found at i:62907098 original size:24 final size:24
Alignment explanation
Indices: 62907066--62907136 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
62907056 TGTCAGGAAA
62907066 GGATTTAGGAGCTGATAAGGGAGG
1 GGATTTAGGAGCTGATAAGGGAGG
*
62907090 GGATTTAGGAGCTGATAAGGGAGA
1 GGATTTAGGAGCTGATAAGGGAGG
* *
62907114 GAATTTA-GAGCTGATTAGGGAGG
1 GGATTTAGGAGCTGATAAGGGAGG
62907137 ATAGTGTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 14 0.33
24 29 0.67
ACGTcount: A:0.31, C:0.04, G:0.42, T:0.23
Consensus pattern (24 bp):
GGATTTAGGAGCTGATAAGGGAGG
Found at i:62908587 original size:27 final size:26
Alignment explanation
Indices: 62908549--62908650 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 26
62908539 AAGCGTCCTG
62908549 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTATGCCAC-ATTATCTGATCTA
* * *
62908576 GTGGCTTTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAT-TATCTGATCTA
* *
62908603 GTGGCTCTGCCACGATTATCT-ATTCTG
1 GTGGCTATGCCAC-ATTATCTGA-TCTA
* * *
62908630 GTGACTCTGTCACATTATCTG
1 GTGGCTATGCCACATTATCTG
62908651 TTCTGGCAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 9 0.14
27 53 0.83
28 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACATTATCTGATCTA
Found at i:62908644 original size:54 final size:53
Alignment explanation
Indices: 62908546--62908656 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
62908536 AGGAAGCGTC
* *
62908546 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGTT
* * * *
62908600 CTGGTGGCTCTGCCACGATTATCT-ATTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGA-TCTAGTGACTCTGCCACATTATCTGTT
62908653 CTGG
1 CTGG
62908657 CAGCCTTGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 13 0.26
54 37 0.74
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
Found at i:62911063 original size:42 final size:42
Alignment explanation
Indices: 62911004--62911205 Score: 181
Period size: 42 Copynumber: 4.6 Consensus size: 42
62910994 TGTGGTTTCG
* *
62911004 TGTAAGACCATATCTGGGATACGGCCTCGATATATGATCCCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATATGATCCCA
* **
62911046 TGTAAGACCATATCTGGGATATGGCATTGGCATCAATATGTTATTTCA
1 TGTAAGACCATATCTGGGATATGGCA-TCG-AT--ATATG--ATCCCA
* * * ** *
62911094 TGTAAGACCTTGTCTGGGACATGGCATCGATATGCGA-CATCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATATGATC-CCA
* * * * *
62911136 TGTAAGACCATAGCTAGGCTATTGGCATAGATATGTGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATATGATCCCA
62911179 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
62911206 TGGCATCTTA
Statistics
Matches: 127, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
42 49 0.39
43 36 0.28
44 6 0.05
46 7 0.06
47 2 0.02
48 27 0.21
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATATGATCCCA
Found at i:62920288 original size:27 final size:27
Alignment explanation
Indices: 62920258--62920435 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
62920248 ATATCGAGTC
* * * *
62920258 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
62920285 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62920312 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62920340 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62920367 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62920394 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62920421 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62920436 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62920397 original size:82 final size:81
Alignment explanation
Indices: 62920279--62920434 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
62920269 TGCTATATAA
*
62920279 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62920344 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62920361 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62920425 CACTTAGTGC
65 CACTTAGTGC
62920435 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62928322 original size:27 final size:27
Alignment explanation
Indices: 62928292--62928469 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
62928282 ATATCGAGTC
* * * *
62928292 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
62928319 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62928346 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62928374 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62928401 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62928428 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62928455 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62928470 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62928431 original size:82 final size:81
Alignment explanation
Indices: 62928313--62928468 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
62928303 TGCTATATAA
*
62928313 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62928378 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62928395 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62928459 CACTTAGTGC
65 CACTTAGTGC
62928469 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62945933 original size:8 final size:8
Alignment explanation
Indices: 62945910--62945948 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
62945900 ATGGATTATT
62945910 TTGAATGAA
1 TTGAATG-A
*
62945919 ATGAATGA
1 TTGAATGA
62945927 TTGAATGA
1 TTGAATGA
*
62945935 TTGAATGG
1 TTGAATGA
62945943 TTGAAT
1 TTGAAT
62945949 TTGTATTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
8 21 0.78
9 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (8 bp):
TTGAATGA
Found at i:62947480 original size:40 final size:40
Alignment explanation
Indices: 62947419--62947584 Score: 273
Period size: 40 Copynumber: 4.2 Consensus size: 40
62947409 AACCCAAGTA
* *
62947419 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
62947458 CCTTCGGGTCTTACCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
62947498 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
62947538 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
62947578 CCTTCGG
1 CCTTCGG
62947585 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 11 0.09
40 107 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:62950220 original size:23 final size:22
Alignment explanation
Indices: 62950194--62950243 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
62950184 TAAATATTTT
62950194 AAAGTATGGCATGTATAGGCTAG
1 AAAGTAT-GCATGTATAGGCTAG
*
62950217 AAAGTCTGCATGTATAGGCTAG
1 AAAGTATGCATGTATAGGCTAG
62950239 AAAGT
1 AAAGT
62950244 CTATGTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.26
Consensus pattern (22 bp):
AAAGTATGCATGTATAGGCTAG
Found at i:62950230 original size:22 final size:22
Alignment explanation
Indices: 62950202--62950245 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
62950192 TTAAAGTATG
62950202 GCATGTATAGGCTAGAAAGTCT
1 GCATGTATAGGCTAGAAAGTCT
62950224 GCATGTATAGGCTAGAAAGTCT
1 GCATGTATAGGCTAGAAAGTCT
62950246 ATGTGTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (22 bp):
GCATGTATAGGCTAGAAAGTCT
Found at i:62958214 original size:24 final size:25
Alignment explanation
Indices: 62958187--62958238 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
62958177 GCCTAGCCTC
62958187 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
62958211 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
62958236 TTT
1 TTT
62958239 CGCACTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:62958313 original size:21 final size:21
Alignment explanation
Indices: 62958286--62958346 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
62958276 TATAATGAGT
62958286 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
62958307 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
62958328 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
62958347 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:62958345 original size:10 final size:10
Alignment explanation
Indices: 62958286--62958346 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
62958276 TATAATGAGT
62958286 ATATCATAG-C
1 ATATCAT-GTC
62958296 ATATCATGTGC
1 ATATCATGT-C
* **
62958307 ATCTCATAAC
1 ATATCATGTC
62958317 ATATCATGTGC
1 ATATCATGT-C
62958328 ATATCATGTC
1 ATATCATGTC
62958338 ATATCATGT
1 ATATCATGT
62958347 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:62959109 original size:27 final size:26
Alignment explanation
Indices: 62959069--62959147 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
62959059 TATTCGACAT
* * *
62959069 TTTACCATACAGGGTTATTATGGTCAC
1 TTTACCCTACAGGGCT-TTACGGTCAC
* *
62959096 TTTACCCTATAGGGGCTTTACGTTCAC
1 TTTACCCTACA-GGGCTTTACGGTCAC
62959123 TTTACCCTACAGGGGCTTTACGGTC
1 TTTACCCTACA-GGGCTTTACGGTC
62959148 TTTTTACCTA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 40 0.91
28 4 0.09
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
TTTACCCTACAGGGCTTTACGGTCAC
Found at i:62959163 original size:27 final size:27
Alignment explanation
Indices: 62959090--62959164 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
62959080 GGGTTATTAT
62959090 GGTCACTTTACCCTATAGGGGCTTTAC
1 GGTCACTTTACCCTATAGGGGCTTTAC
* *
62959117 GTTCACTTTACCCTACAGGGGCTTTAC
1 GGTCACTTTACCCTATAGGGGCTTTAC
**
62959144 GGTCTTTTTA-CCTATTAGGGG
1 GGTCACTTTACCCTA-TAGGGG
62959165 TATTTTAGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.10
27 37 0.90
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
GGTCACTTTACCCTATAGGGGCTTTAC
Found at i:62959239 original size:27 final size:26
Alignment explanation
Indices: 62959209--62959306 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 26
62959199 GTAAATCTAC
62959209 AAACCAAGGGTATTTCACTAATTTTGT
1 AAACCAAGGGTATTTCA-TAATTTTGT
*
62959236 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTC-ATAATTTTGT
* **
62959262 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTA-TTTCATAATTTTGT
* *
62959292 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
62959307 TGGTAATTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
26 4 0.07
27 30 0.51
28 7 0.12
29 14 0.24
30 4 0.07
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (26 bp):
AAACCAAGGGTATTTCATAATTTTGT
Found at i:62959312 original size:27 final size:27
Alignment explanation
Indices: 62959258--62959368 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
62959248 TTTCTATAAT
* * *
62959258 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
62959286 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
62959313 TTTTACCAATTAAGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
62959340 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
62959367 TT
1 TT
62959369 CTACCCTACA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 63 0.90
28 7 0.10
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.44
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:62959314 original size:56 final size:54
Alignment explanation
Indices: 62959189--62959368 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
62959179 CATCCTACAA
* * * * * * *
62959189 GGGTGTTTTGGTAA-ATCTACAAACCAAGGGTATTTCACTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAA-CAG
* * * *
62959243 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTTACAAA-TCAAGGGTATTTTAGTAATTTTGTAAA-CAG
* * * **
62959299 GGGTATTTTGGTAA-TTTTACCAATTAAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAAC-AG
62959353 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
62959369 CTACCCTACA
Statistics
Matches: 100, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
53 1 0.01
54 48 0.48
55 16 0.16
56 35 0.35
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTTAGTAATTTTGTAAACAG
Found at i:62959355 original size:54 final size:54
Alignment explanation
Indices: 62959270--62959373 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
62959260 TTAGAAAGTC
* ** *
62959270 AAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACCAATT
1 AAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACCAATT
62959324 AAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTACC
1 AAGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTCTACC
62959374 CTACAGAGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.02
54 44 0.98
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACCAATT
Found at i:62959384 original size:27 final size:26
Alignment explanation
Indices: 62959299--62959396 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
62959289 TGTAAATCAG
62959299 GGGTATTTTGGTAATTTTACCAATTA-A
1 GGGTATTTTGGTAATTTTACC-A-TACA
*
62959326 GGGTATTTTGGTAATTTTA-CAAACTA
1 GGGTATTTTGGTAATTTTACCATAC-A
* *
62959352 GGGGTATTTTGGTAATTCTACCCTACA
1 -GGGTATTTTGGTAATTTTACCATACA
**
62959379 GAGGTATTTCAGTAATTT
1 G-GGTATTTTGGTAATTT
62959397 CATAATCGAG
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
24 1 0.02
25 1 0.02
26 3 0.05
27 51 0.86
28 3 0.05
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACCATACA
Found at i:62959385 original size:54 final size:53
Alignment explanation
Indices: 62959270--62959396 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
62959260 TTAGAAAGTC
* ** * *
62959270 AAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACCAATT
1 AAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACC-ACT
*
62959324 AAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTACC-CT
1 AAGGGTATTTTAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTCTACCACT
*
62959376 ACAGAGGTATTTCAGTAATTT
1 A-AG-GGTATTTTAGTAATTT
62959397 CATAATCGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 58 0.92
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (53 bp):
AAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACCACT
Found at i:62959475 original size:27 final size:27
Alignment explanation
Indices: 62959400--62959464 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
62959390 GTAATTTCAT
*
62959400 AATCGAGGGTAAAA-CGATAATTCTATA
1 AATCGAGGGTAAAATAG-TAATTCTATA
*
62959427 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
62959454 AATCGAGGGTA
1 AATCGAGGGTA
62959465 CTTTGGTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTATA
Found at i:62963106 original size:21 final size:22
Alignment explanation
Indices: 62963080--62963120 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
62963070 CACTTGACAT
62963080 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
62963101 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
62963121 ACCAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.29, G:0.44, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:62964360 original size:46 final size:46
Alignment explanation
Indices: 62964308--62964429 Score: 133
Period size: 47 Copynumber: 2.6 Consensus size: 46
62964298 TAATTTCGTA
* * **
62964308 GCCGATGCATGTCCTAGACATGTCTTATATTGGCT-T-ATGTCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACATAGGCTCTCAT-AAT-GAG
*
62964354 GCCGATGCATGT-CTCAGACATGGTCTTACATAGGCTCTCATAATGTG
1 GCCGATGCATGTCCT-AGACAT-GTCTTACATAGGCTCTCATAATGAG
*
62964401 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCTAGACATGTCTTACA
62964430 CTAGCCCAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 26 0.40
47 32 0.49
48 3 0.05
49 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACATAGGCTCTCATAATGAG
Found at i:62977119 original size:19 final size:19
Alignment explanation
Indices: 62977095--62977134 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
62977085 TCTCATATAG
62977095 CTCTTTTGACCATAATTCA
1 CTCTTTTGACCATAATTCA
62977114 CTCTTTTGACCATAATTCA
1 CTCTTTTGACCATAATTCA
62977133 CT
1 CT
62977135 TACAATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.05, T:0.42
Consensus pattern (19 bp):
CTCTTTTGACCATAATTCA
Found at i:62977445 original size:44 final size:42
Alignment explanation
Indices: 62977372--62977474 Score: 145
Period size: 44 Copynumber: 2.4 Consensus size: 42
62977362 CCGCAAACAG
62977372 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACAT
* * *
62977414 GGTCTTACATGTAAATCTGAAAT-CGATGCCAATGTCCTAGACGT
1 GGTCTTACACG-AAATC--AAATACGATGCCAATGTCCCAGACAT
62977458 GGTCTTACACGAAATCA
1 GGTCTTACACGAAATCA
62977475 CATATCATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
41 1 0.02
42 10 0.19
43 10 0.19
44 29 0.54
45 4 0.07
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACAT
Found at i:62985406 original size:37 final size:37
Alignment explanation
Indices: 62985356--62985430 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
62985346 AAGAAACACA
*
62985356 TCTGGGTACTTGCACATAACAGGTACTAATTCAATGT
1 TCTGGGTACTTGCACACAACAGGTACTAATTCAATGT
62985393 TCTGGGTACTTGCACACAACAGGTACTAATTCAATGT
1 TCTGGGTACTTGCACACAACAGGTACTAATTCAATGT
62985430 T
1 T
62985431 TCTTTCGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (37 bp):
TCTGGGTACTTGCACACAACAGGTACTAATTCAATGT
Found at i:62987253 original size:40 final size:40
Alignment explanation
Indices: 62987171--62987427 Score: 344
Period size: 40 Copynumber: 6.5 Consensus size: 40
62987161 AAGCCAAGTA
* * * *
62987171 CCTTCGGGATTTA-ACCGGATATAGCT-AGTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
62987209 CCTTCAGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62987249 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62987289 CCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
62987329 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62987369 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
62987410 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
62987428 ATTATCATCC
Statistics
Matches: 199, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 11 0.06
39 16 0.08
40 145 0.73
41 23 0.12
42 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62989855 original size:190 final size:190
Alignment explanation
Indices: 62989532--62989920 Score: 769
Period size: 190 Copynumber: 2.0 Consensus size: 190
62989522 GTGAATCTTT
62989532 TCAAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAATTCGTTCGGATACTTCATATGG
1 TCAAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAATTCGTTCGGATACTTCATATGG
62989597 CCCTATGAACCTCGGATATCAATCATATAACATTTTAAATCATAAGAAATAATTTACATTCAAAT
66 CCCTATGAACCTCGGATATCAATCATATAACATTTTAAATCATAAGAAATAATTTACATTCAAAT
62989662 TCATATATCATCTATAACATTTCATCAACTAATATCATATATCAACAATTTGGTCTTTTA
131 TCATATATCATCTATAACATTTCATCAACTAATATCATATATCAACAATTTGGTCTTTTA
62989722 TCAAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAATTCGTTCGGATACTTCATATGG
1 TCAAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAATTCGTTCGGATACTTCATATGG
62989787 CCCTATGAACCTCGGATATCAATCATATAACATTTTAAATCATAAGAAATAATTTACATTCAAAT
66 CCCTATGAACCTCGGATATCAATCATATAACATTTTAAATCATAAGAAATAATTTACATTCAAAT
62989852 TCATATATCATCTATAACATTTCATCAACTAATATCATATATCAACAATTTGGTCTTTTA
131 TCATATATCATCTATAACATTTCATCAACTAATATCATATATCAACAATTTGGTCTTTTA
*
62989912 TCAAATTCA
1 TCAAGTTCA
62989921 TGAACCTAAG
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
190 198 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (190 bp):
TCAAGTTCAGGGGGCAAAATCAATCTATACGCAACTGGACCAATTCGTTCGGATACTTCATATGG
CCCTATGAACCTCGGATATCAATCATATAACATTTTAAATCATAAGAAATAATTTACATTCAAAT
TCATATATCATCTATAACATTTCATCAACTAATATCATATATCAACAATTTGGTCTTTTA
Found at i:62990122 original size:23 final size:23
Alignment explanation
Indices: 62990094--62990203 Score: 127
Period size: 23 Copynumber: 4.8 Consensus size: 23
62990084 ACGAATTCCA
* *
62990094 ACCAAACACACCAAAATGATTCC
1 ACCAAACACACCAGAATGAATCC
62990117 ACCAAACACACCAGAATG-ATCC
1 ACCAAACACACCAGAATGAATCC
*
62990139 ATCCAAACACACCAAAAT-AATCC
1 A-CCAAACACACCAGAATGAATCC
* *
62990162 TCCCAAACACACCAGAAT-AATCT
1 -ACCAAACACACCAGAATGAATCC
62990185 ACCCAAACACACCAGAATG
1 A-CCAAACACACCAGAATG
62990204 GCATTAAGTG
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
22 4 0.05
23 71 0.95
ACGTcount: A:0.47, C:0.35, G:0.05, T:0.12
Consensus pattern (23 bp):
ACCAAACACACCAGAATGAATCC
Found at i:62990145 original size:46 final size:47
Alignment explanation
Indices: 62990090--62990203 Score: 151
Period size: 46 Copynumber: 2.5 Consensus size: 47
62990080 ATACACGAAT
* *
62990090 TCCAACCAAACACACCAAAATGATTCC-ACCAAACACACCAGAATGA
1 TCCAACCAAACACACCAAAATGAATCCTACCAAACACACCAGAATAA
* *
62990136 TCCATCCAAACACACCAAAAT-AATCCTCCCAAACACACCAGAATAA
1 TCCAACCAAACACACCAAAATGAATCCTACCAAACACACCAGAATAA
* * *
62990182 TCTACCCAAACACACCAGAATG
1 TCCAACCAAACACACCAAAATG
62990204 GCATTAAGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
45 4 0.07
46 55 0.93
ACGTcount: A:0.46, C:0.36, G:0.05, T:0.12
Consensus pattern (47 bp):
TCCAACCAAACACACCAAAATGAATCCTACCAAACACACCAGAATAA
Found at i:62990372 original size:17 final size:17
Alignment explanation
Indices: 62990330--62990372 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
62990320 ATTCCAGTTC
*
62990330 TCAATTCAATTTCACTT
1 TCAATTCAAATTCACTT
62990347 TC-ATATCAAATTCACTT
1 TCAAT-TCAAATTCACTT
62990364 TCAATTCAA
1 TCAATTCAA
62990373 TATACAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (17 bp):
TCAATTCAAATTCACTT
Found at i:62990375 original size:23 final size:23
Alignment explanation
Indices: 62990331--62990384 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
62990321 TTCCAGTTCT
*
62990331 CAATTCAATTTCACTTTCATAT-
1 CAATTCAATTTCACATTCATATA
*
62990353 CAAATTCACTTTCA-ATTCAATATA
1 C-AATTCAATTTCACATTC-ATATA
62990377 CAATTCAA
1 CAATTCAA
62990385 CTCAATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 4 0.15
23 21 0.81
24 1 0.04
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (23 bp):
CAATTCAATTTCACATTCATATA
Found at i:63003628 original size:28 final size:26
Alignment explanation
Indices: 63003592--63003709 Score: 85
Period size: 28 Copynumber: 4.2 Consensus size: 26
63003582 CTAGGCATTG
*
63003592 AAATTTTCTTAATAATAACTTTATATTA
1 AAATATTCTTAATAATAA--TTATATTA
63003620 AAATATTCTTAATAATAATTATATTA
1 AAATATTCTTAATAATAATTATATTA
* * * *
63003646 AGAATGTTATTAAATTATATATTATTTTA
1 A-AATATTCTT-AATAATA-ATTATATTA
* *
63003675 TTAAAT-TGTATTTAATAATAATTATGTTA
1 --AAATAT-T-CTTAATAATAATTATATTA
63003704 AAATAT
1 AAATAT
63003710 GATTAAATTA
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
26 9 0.12
27 11 0.15
28 24 0.32
29 17 0.23
30 10 0.14
31 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (26 bp):
AAATATTCTTAATAATAATTATATTA
Found at i:63003766 original size:61 final size:57
Alignment explanation
Indices: 63003615--63003768 Score: 168
Period size: 61 Copynumber: 2.6 Consensus size: 57
63003605 AATAACTTTA
* *
63003615 TATTAAAATAT-TCTTAATAATAATTATATTAAGAATGTTATTAAATTATATATTATTT
1 TATTAAAATATAT-TTAATAATAATTATATTAA-AATATGATTAAATTATATATTATTT
* * * *
63003673 TATTAAATTGTATTTAATAATAATTATGTTAAAATATGATTAAATTATTTATTTTTATTTT
1 TATTAAAATATATTTAATAATAATTATATTAAAATATGATTAAATTA--TA-TATTA-TTT
*
63003734 TATTAAAATATATTTAACAATAATCT-TATTAAAAT
1 TATTAAAATATATTTAATAATAAT-TATATTAAAAT
63003769 TTAATAACAA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
57 13 0.16
58 27 0.34
59 3 0.04
60 4 0.05
61 32 0.40
62 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (57 bp):
TATTAAAATATATTTAATAATAATTATATTAAAATATGATTAAATTATATATTATTT
Found at i:63003782 original size:25 final size:26
Alignment explanation
Indices: 63003733--63003782 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
63003723 ATTTTTATTT
*
63003733 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
63003759 TTATTAAAATTTA-ATAACAATAAT
1 TTATTAAAATATATATAACAATAAT
63003783 TATCTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:63003945 original size:16 final size:16
Alignment explanation
Indices: 63003924--63003978 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
63003914 TGAATTACTG
63003924 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* * **
63003940 ATTACAACTATATTTA
1 ATTACAGCTCTATTCC
* *
63003956 ATTACAGCCCTACTCC
1 ATTACAGCTCTATTCC
63003972 ATTACAG
1 ATTACAG
63003979 TGAACCAAAC
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:63005139 original size:12 final size:12
Alignment explanation
Indices: 63005122--63005148 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
63005112 GAATGAGAGT
63005122 TTTGGTTTTGTA
1 TTTGGTTTTGTA
63005134 TTTGGTTTTGTA
1 TTTGGTTTTGTA
63005146 TTT
1 TTT
63005149 CTTAGGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.22, T:0.70
Consensus pattern (12 bp):
TTTGGTTTTGTA
Found at i:63006122 original size:27 final size:27
Alignment explanation
Indices: 63006092--63006297 Score: 277
Period size: 27 Copynumber: 7.6 Consensus size: 27
63006082 TTAGTTTACC
63006092 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
63006119 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
63006146 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
63006173 AAATTACCAAAATACCTCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
63006200 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
63006227 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
63006254 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
63006281 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
63006298 TCGACCTGTA
Statistics
Matches: 157, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:63006308 original size:81 final size:80
Alignment explanation
Indices: 63006092--63006345 Score: 255
Period size: 81 Copynumber: 3.1 Consensus size: 80
63006082 TTAGTTTACC
* * * *
63006092 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-TAGTTTACAAAATTA-CTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTGT--AAAATTATC-A
* * *
63006155 AAATACCCTTGGTTTATA
63 AAATACCCCTAGTTTGTA
* * **
63006173 AAATTACCAAAATACCTCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATA-CCCTCGACTGTAAAATTATCAA
63006237 AATACCCCTAGTTTGTA
64 AATACCCCTAGTTTGTA
* ** **
63006254 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGA-CTGTAAAATTATCAAA
* *
63006319 ATA-CCCTCGACTTGTA
65 ATACCCCTAG-TTTGTA
63006335 AAATTACCAAA
1 AAATTACCAAA
63006346 GTACTCTCGA
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
80 10 0.07
81 128 0.88
82 6 0.04
83 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTGTAAAATTATCAAAA
TACCCCTAGTTTGTA
Found at i:63006313 original size:54 final size:55
Alignment explanation
Indices: 63006092--63006299 Score: 305
Period size: 54 Copynumber: 3.8 Consensus size: 55
63006082 TTAGTTTACC
**
63006092 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-TAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCTAGTTTGTA
* * *
63006146 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATA-CCTCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCTAGTTTGTA
*
63006200 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCTAGTTTGTA
* * **
63006254 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTC
63006300 GACCTGTAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
53 3 0.02
54 131 0.96
55 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (55 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCTAGTTTGTA
Found at i:63006354 original size:27 final size:26
Alignment explanation
Indices: 63006092--63006358 Score: 194
Period size: 27 Copynumber: 9.9 Consensus size: 26
63006082 TTAGTTTACC
* *
63006092 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCTC-GATTTGTA
* **
63006119 AAATTACCAAAATACC-CTTAGTTTACA
1 AAATTACCAAAATACCTC-GA-TTTGTA
* * * *
63006146 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATA-CCTCGATTTGTA
*
63006173 AAATTACCAAAATACCTCTAGTTTGTA
1 AAATTACCAAAATACCTCGA-TTTGTA
* *
63006200 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCTC-GATTTGTA
* * *
63006227 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCTCGA-TTTGTA
* *
63006254 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCTC-GATTTGTA
** **
63006281 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATA-CCTCGATTTGTA
*** *
63006308 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATA-CCTCGATTTGTA
*
63006335 AAATTACCAAAGTACTCTCGATTT
1 AAATTACCAAAATAC-CTCGATTT
63006359 ACAGAATTAC
Statistics
Matches: 195, Mismatches: 36, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
26 6 0.03
27 183 0.94
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCTCGATTTGTA
Found at i:63006367 original size:54 final size:54
Alignment explanation
Indices: 63006307--63006424 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 54
63006297 CTCGACCTGT
* * * *
63006307 AAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACTCTCGATTTAC
1 AAAATTACTGAAATACCCTCAACTTATAAAATTACCAAAGTACCCTCGATTTAC
* *** * ***
63006361 AGAATTACTGTTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACTGAAATACCCTCAACTTATAAAATTACCAAAGTACCCTCGATTTAC
63006415 AAAATTACTG
1 AAAATTACTG
63006425 TTTTACCCTT
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (54 bp):
AAAATTACTGAAATACCCTCAACTTATAAAATTACCAAAGTACCCTCGATTTAC
Found at i:63006385 original size:27 final size:27
Alignment explanation
Indices: 63006351--63006783 Score: 485
Period size: 27 Copynumber: 16.0 Consensus size: 27
63006341 CCAAAGTACT
*
63006351 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * * *
63006378 CTCAATTTATAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* *
63006405 CTCGATTTACAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * * *
63006432 CTTGATTTATAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
63006459 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * **
63006486 CTTGATTGACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * *
63006513 CTTGATTGATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * *
63006540 CTCGATTTATAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* *
63006567 CTCGATTTACAAAATTTCTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * *
63006594 CTCGATTTATAGAATT-TTCGTTTTACC
1 CTCGATTTACAGAATTACT-ATTTTACC
* *
63006621 CTCGATTTACAAAATTATTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
* * *
63006648 CTCAATTTATAGAATTA-TCGTTTTACC
1 CTCGATTTACAGAATTACT-ATTTTACC
* *
63006675 TTCGATTAACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
*
63006702 CTCGATTTACAAAATTACTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
63006729 CTCGATTTACAGAATTA-TCATTTTACC
1 CTCGATTTACAGAATTACT-ATTTTACC
* * *
63006756 CTCGATTTATAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACTATTTTACC
63006783 C
1 C
63006784 CTAGGGTGTT
Statistics
Matches: 344, Mismatches: 56, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.01
27 338 0.98
28 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
CTCGATTTACAGAATTACTATTTTACC
Found at i:63006425 original size:54 final size:54
Alignment explanation
Indices: 63006351--63006783 Score: 553
Period size: 54 Copynumber: 8.0 Consensus size: 54
63006341 CCAAAGTACT
* * * *
63006351 CTCGATTTACAGAATTACTGTTTTACCCTCAATTTATAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * * **
63006405 CTCGATTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * *
63006459 CTCGATTTACAGAATTACTATTTTACCCTTGATTGACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * * **
63006513 CTTGATTGATAGAATTACTATTTTACCCTCGATTTATAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * **
63006567 CTCGATTTACAAAATTTCTATTTTACCCTCGATTTATAGAATTTTCGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * * *
63006621 CTCGATTTACAAAATTATTATTTTACCCTCAATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* * * * **
63006675 TTCGATTAACAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACC
1 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
* *
63006729 CTCGATTTACAGAATTA-TCATTTTACCCTCGATTTATAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACT-ATTTTACCCTCGATTTATAGAATTACCGTTTTACC
63006783 C
1 C
63006784 CTAGGGTGTT
Statistics
Matches: 332, Mismatches: 46, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.00
54 331 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (54 bp):
CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACC
Found at i:63007148 original size:27 final size:26
Alignment explanation
Indices: 63007110--63007169 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
63007100 CCACATATAT
* *
63007110 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
63007136 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
63007163 ATATCTG
1 ATATCTG
63007170 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:63007319 original size:6 final size:6
Alignment explanation
Indices: 63007288--63007387 Score: 82
Period size: 6 Copynumber: 16.3 Consensus size: 6
63007278 TTGCATTCAC
* *
63007288 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
63007337 ATTCTG -TCACTTG ATTCTG ATTCTG ATTCTC ACTT-TG ATTCT- AGTTCTG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG A-TTCTG ATTCTG A-TTCTG
63007386 AT
1 AT
63007388 AATGTTTCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
5 6 0.08
6 59 0.78
7 9 0.12
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:63007339 original size:37 final size:37
Alignment explanation
Indices: 63007288--63007366 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63007278 TTGCATTCAC
* *
63007288 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTG
* *
63007325 ATTCTGATTCTGATTCTGTCACTTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTG
63007362 ATTCT
1 ATTCT
63007367 CACTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTG
Found at i:63007351 original size:25 final size:24
Alignment explanation
Indices: 63007323--63007387 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 24
63007313 ATACTGATTC
63007323 TGATTCTGATTCTGATTCTGTCAC-T
1 TGATTCTGATTCTGATTC--TCACTT
63007348 TGATTCTGATTCTGATTCTCACTT
1 TGATTCTGATTCTGATTCTCACTT
63007372 TGATTCT-AGTTCTGAT
1 TGATTCTGA-TTCTGAT
63007388 AATGTTTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.13
24 15 0.39
25 18 0.47
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.49
Consensus pattern (24 bp):
TGATTCTGATTCTGATTCTCACTT
Found at i:63007376 original size:37 final size:36
Alignment explanation
Indices: 63007296--63007378 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 36
63007286 ACATTCTGAT
* *
63007296 TTTGATTCTGTTACCTGATACTGATTCTGATTCTGA
1 TTTGATTCTGTCACCTGATACTGATTCTGATTCTCA
* *
63007332 TTCTGATTCTGTCACTTGATTCTGATTCTGATTCTCA
1 TT-TGATTCTGTCACCTGATACTGATTCTGATTCTCA
63007369 CTTTGATTCT
1 -TTTGATTCT
63007379 AGTTCTGATA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
36 2 0.05
37 37 0.90
38 2 0.05
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.49
Consensus pattern (36 bp):
TTTGATTCTGTCACCTGATACTGATTCTGATTCTCA
Found at i:63009347 original size:27 final size:27
Alignment explanation
Indices: 63009301--63009638 Score: 371
Period size: 27 Copynumber: 12.7 Consensus size: 27
63009291 TTAGTTTACC
63009301 AAATTACC-AAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
63009327 AAATTACCAAAATACCCTTGG-TT-TA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
63009352 CAAATTACCAAAATACCCCTGGTTTGTA
1 -AAATTACCAAAATACCCTTGGTTTGTA
* * *
63009380 AAATTA-CTAAATACACTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
63009406 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
63009433 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
63009460 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
63009487 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
63009514 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
63009541 AAATTACC-AAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* * ***
63009567 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
63009594 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
63009621 AAATTACGAAAGTACCCT
1 AAATTACCAAAATACCCT
63009639 CGATTTACAG
Statistics
Matches: 270, Mismatches: 36, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
25 2 0.01
26 74 0.27
27 192 0.71
28 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:63009607 original size:134 final size:134
Alignment explanation
Indices: 63009325--63009637 Score: 382
Period size: 134 Copynumber: 2.3 Consensus size: 134
63009315 CCTTGGTTTG
* * *
63009325 TAAAATTACCAAAATACCCTTG-GTT-TACAAATTACCAAAATACCCCTGGTTTGTAAAATTACT
1 TAAAATTACCAAAATACCCTAGACTTGTA-AAATTACCAAAATACCCCTGGTTTGTAAAATTACA
* * * *
63009388 AAATACACTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
65 AAATACACCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCG
***
63009453 GTTTA
130 ACCTA
*
63009458 TAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATC
1 TAAAATTACCAAAATA-CCCTAGACTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-C
* * *
63009522 AAAATACCCCTAGTTTGTAAAATTACC-AAATACCCCTGATTTGTGAAATTACTAAAATACCCTC
64 AAAATACACCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTC
*
63009586 GACCTG
129 GACCTA
*** * * *
63009592 TAAAATTATTGAAATACCCTCGACTTGTAAAATTACGAAAGTACCC
1 TAAAATTACCAAAATACCCTAGACTTGTAAAATTACCAAAATACCC
63009638 TCGATTTACA
Statistics
Matches: 155, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
133 21 0.14
134 109 0.70
135 25 0.16
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (134 bp):
TAAAATTACCAAAATACCCTAGACTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACAA
AATACACCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGA
CCTA
Found at i:63009652 original size:27 final size:26
Alignment explanation
Indices: 63009633--63010069 Score: 478
Period size: 27 Copynumber: 16.2 Consensus size: 26
63009623 ATTACGAAAG
63009633 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
63009660 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
63009687 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
63009714 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* * *
63009741 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
63009768 TACCCTCGATTGACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
63009795 TACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
63009822 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
63009849 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
63009876 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* **
63009903 TACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
63009930 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* * *
63009957 TACCTTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
63009984 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
63010011 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* * *
63010038 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
63010065 TACCC
1 TACCC
63010070 CTAGGGTGTT
Statistics
Matches: 358, Mismatches: 43, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 352 0.98
28 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACGTTT
Found at i:63010422 original size:33 final size:32
Alignment explanation
Indices: 63010375--63010436 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
63010365 CGCTGCAATC
* *
63010375 TGGTGGCTTCGCCACATATATATATATCTGTTA
1 TGGTGGCCTAGCCACA-ATATATATATCTGTTA
* *
63010408 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
63010437 GTGACTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 11 0.44
33 14 0.56
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTTA
Found at i:63010611 original size:31 final size:31
Alignment explanation
Indices: 63010576--63010648 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
63010566 TTGCATTCAC
* *
63010576 ATTCTGATTTTGATACTGTTACCTGATACTG
1 ATTCTGATTCTGATACTGTCACCTGATACTG
** *
63010607 ATTCTGATTCTGATTTTGTCACCTGATTCTG
1 ATTCTGATTCTGATACTGTCACCTGATACTG
*
63010638 ATTCTAATTCT
1 ATTCTGATTCT
63010649 CATTTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATACTGTCACCTGATACTG
Found at i:63010654 original size:31 final size:31
Alignment explanation
Indices: 63010596--63010655 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
63010586 TGATACTGTT
* *
63010596 ACCTGATACTGATTCTGATTCTGATTTTGTC
1 ACCTGATACTGATTCTAATTCTCATTTTGTC
*
63010627 ACCTGATTCTGATTCTAATTCTCATTTTG
1 ACCTGATACTGATTCTAATTCTCATTTTG
63010656 ATTTTAGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ACCTGATACTGATTCTAATTCTCATTTTGTC
Found at i:63018000 original size:79 final size:79
Alignment explanation
Indices: 63017889--63018112 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 79
63017879 TCTACTCGTT
* * *
63017889 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
63017954 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* *
63017969 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCAGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
63018032 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* ** * * * *
63018047 CAAATGTCTTCAGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGGCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
63018111 GA
64 GA
63018113 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 33 0.27
79 56 0.46
80 34 0.28
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:63018006 original size:39 final size:40
Alignment explanation
Indices: 63017889--63018112 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
63017879 TCTACTCGTT
* *
63017889 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
63017929 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
63017969 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
63018008 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * * * *
63018047 CAAATGTCTTC-AGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
63018088 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63018113 CATCATTCAA
Statistics
Matches: 161, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 72 0.45
40 76 0.47
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:63034006 original size:39 final size:40
Alignment explanation
Indices: 63033909--63034131 Score: 246
Period size: 39 Copynumber: 5.7 Consensus size: 40
63033899 TTGAATGATG
*
63033909 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
63033948 AT-CGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
63033988 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
63034027 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
63034066 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
63034105 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
63034132 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
39 91 0.57
40 67 0.42
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:63034093 original size:79 final size:79
Alignment explanation
Indices: 63033963--63034131 Score: 234
Period size: 79 Copynumber: 2.1 Consensus size: 79
63033953 ACTAAGATCT
* * *
63033963 GAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-AT
1 GAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATA-
*
63034027 TCCGGGCTAAG-CCC
65 ACCGGGCTAAGTCCC
* * *
63034041 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 GAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGATACTATA
*
63034106 ACCGGGCTATGTCCC
65 ACCGGGCTAAGTCCC
63034121 GAAGGCATTTG
1 GAAGGCATTTG
63034132 AACGAGTAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 32 0.40
79 33 0.41
80 15 0.19
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATAA
CCGGGCTAAGTCCC
Found at i:63034153 original size:79 final size:79
Alignment explanation
Indices: 63033963--63034164 Score: 214
Period size: 79 Copynumber: 2.6 Consensus size: 79
63033953 ACTAAGATCT
** * * * * *
63033963 GAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 GAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT
*
63034027 TCCGGGCTAAGCCC
66 ACCGGGCTAAGCCC
** *
63034041 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 GAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT
*
63034105 AACCGGGCTATGTCCC
66 -ACCGGGCTAAG-CCC
* * *
63034121 GAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 GAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
63034165 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
78 34 0.32
79 48 0.45
80 25 0.23
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT
ACCGGGCTAAGCCC
Found at i:63041984 original size:40 final size:40
Alignment explanation
Indices: 63041900--63042080 Score: 242
Period size: 40 Copynumber: 4.5 Consensus size: 40
63041890 TTGAATGATG
* * * *
63041900 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63041940 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63041980 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63042019 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63042059 TCCGGGTTAAGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
63042081 ATTGGGTTGA
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
39 35 0.28
40 83 0.66
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63042036 original size:79 final size:81
Alignment explanation
Indices: 63041900--63042080 Score: 244
Period size: 79 Copynumber: 2.3 Consensus size: 81
63041890 TTGAATGATG
*
63041900 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
63041964 TGTGCGAGATACTAAT
66 TGTGCGAGATACTAAA
* * * **
63041980 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
63042042 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
*
63042059 TCCGGGTTAAGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
63042081 ATTGGGTTGA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 28 0.31
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:63043459 original size:1 final size:1
Alignment explanation
Indices: 63043453--63043513 Score: 122
Period size: 1 Copynumber: 61.0 Consensus size: 1
63043443 CGGTCTTCGG
63043453 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
63043514 GGGGGGTGTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:63051279 original size:79 final size:79
Alignment explanation
Indices: 63051148--63051304 Score: 287
Period size: 79 Copynumber: 2.0 Consensus size: 79
63051138 CCTAATTATA
*
63051148 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACCTCCTAATGCACTTAGGTTATCTT
1 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACATCCTAATGCACTTAGGTTATCTT
*
63051213 TCTTCTAAACTCAG
66 TCTTATAAACTCAG
*
63051227 AAAATCCTAAATATTCATGCAATTCTGACTATAGTAAATACATCCTAATGCACTTAGGTTATCTT
1 AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACATCCTAATGCACTTAGGTTATCTT
63051292 TCTTATAAACTCA
66 TCTTATAAACTCA
63051305 ATTTTTGTAT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (79 bp):
AAAATCCTAAATATTCATGCAATTCTGACTATAATAAATACATCCTAATGCACTTAGGTTATCTT
TCTTATAAACTCAG
Found at i:63067229 original size:40 final size:39
Alignment explanation
Indices: 63067145--63067329 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
63067135 TTGAATGATG
* * * *
63067145 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63067185 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
63067225 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63067264 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
63067305 -CCGGGCTATA-TCCCGAAGGCATTTG
1 TCCGGGCTA-AGT-CCGAAGGCATTTG
63067330 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63067281 original size:79 final size:80
Alignment explanation
Indices: 63067145--63067329 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
63067135 TTGAATGATG
* *
63067145 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
63067209 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
63067224 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
63067287 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
63067304 ACCGGGCTATATCCCGAAGGCATTTG
1 TCCGGGCTA-AGCCCGAAGGCATTTG
63067330 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:63067351 original size:79 final size:79
Alignment explanation
Indices: 63067198--63067362 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
63067188 GGACTAAGAT
* * **
63067198 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
63067263 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
63067277 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATATCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-AGCCCGAAGGCATTTGAACGAGTTA-C
* *
63067340 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
63067356 CCGAAGG
1 CCGAAGG
63067363 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.62
80 26 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63079962 original size:28 final size:28
Alignment explanation
Indices: 63079899--63080021 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
63079889 ATATTAAGTC
*
63079899 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
63079926 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
63079954 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
63079982 CTCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
63080011 CGCACACTTAG
1 CGCACACTTAG
63080022 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.26
28 48 0.56
29 15 0.18
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63084668 original size:30 final size:30
Alignment explanation
Indices: 63084609--63084669 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
63084599 GTTGAGTTCA
*
63084609 TGGTTATACACTAAAGACCATCTGGTTAAG
1 TGGTTATACACTAAAGACCATCTAGTTAAG
*
63084639 TGGTTATACACTAAAGACCATCTATTTAAG
1 TGGTTATACACTAAAGACCATCTAGTTAAG
63084669 T
1 T
63084670 AACTCTCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (30 bp):
TGGTTATACACTAAAGACCATCTAGTTAAG
Found at i:63091077 original size:45 final size:45
Alignment explanation
Indices: 63091017--63091328 Score: 299
Period size: 45 Copynumber: 7.0 Consensus size: 45
63091007 ATCCATAATA
* *
63091017 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACTTATATCACG
1 AACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCACG
* * * * *
63091062 AACTTGGAACAACTCAACAAGTTCAGAT-TTCTCACATATATCACG
1 AACTCGGACCAACTCAACAAGCTCGGATGCT-TCACATATATCACG
* * *
63091107 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACGTATATCACA
1 AACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCACG
* * * * * *
63091152 AACTTGGACAAACTCAATAAGTTCAGAT-TTCTCACATATATCACG
1 AACTCGGACCAACTCAACAAGCTCGGATGCT-TCACATATATCACG
* ** * ** * *
63091197 AACTCAGACCAACTCAACGTGCTCGGATGC-TCGCATCGATAATG
1 AACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCACG
* * *
63091241 AACTCAGACCAACTCAAC-AGCTCAGATGCTTCACATATATCATG
1 AACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCACG
* * **
63091285 AACTTGGACCAACTCAACAAGTTCGGATTTTTCACATATATCAC
1 AACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCAC
63091329 TTAATATCAA
Statistics
Matches: 210, Mismatches: 51, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
43 9 0.04
44 55 0.26
45 145 0.69
46 1 0.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (45 bp):
AACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCACG
Found at i:63091174 original size:90 final size:90
Alignment explanation
Indices: 63091017--63091328 Score: 366
Period size: 90 Copynumber: 3.5 Consensus size: 90
63091007 ATCCATAATA
* *
63091017 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACTTATATCACGAACTTGGAACAACTCAACAA
1 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACGTATATCACAAACTTGGAACAACTCAACAA
63091082 GTTCAGATTTCTCACATATATCACG
66 GTTCAGATTTCTCACATATATCACG
*
63091107 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACGTATATCACAAACTTGG-ACAAACTCAATA
1 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACGTATATCACAAACTTGGAAC-AACTCAACA
63091171 AGTTCAGATTTCTCACATATATCACG
65 AGTTCAGATTTCTCACATATATCACG
* * * ** ** *
63091197 AACTCAGACCAACTCAACGTGCTCGGATGCTCGCATCG-ATA--ATGAACTCAGACCAACTCAAC
1 AACTCGGACCAACTCAACGAGCTCGGATGCT-TCA-CGTATATCACAAACTTGGAACAACTCAAC
* * *
63091259 -AGCTCAGA-TGCTTCACATATATCATG
64 AAGTTCAGATTTC-TCACATATATCACG
* * * ** *
63091285 AACTTGGACCAACTCAACAAGTTCGGATTTTTCACATATATCAC
1 AACTCGGACCAACTCAACGAGCTCGGATGCTTCACGTATATCAC
63091329 TTAATATCAA
Statistics
Matches: 189, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
86 1 0.01
87 7 0.04
88 44 0.23
89 16 0.08
90 114 0.60
91 5 0.03
92 2 0.01
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (90 bp):
AACTCGGACCAACTCAACGAGCTCGGATGCTTCACGTATATCACAAACTTGGAACAACTCAACAA
GTTCAGATTTCTCACATATATCACG
Found at i:63091810 original size:20 final size:18
Alignment explanation
Indices: 63091773--63091823 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
63091763 CTATAGCAAC
63091773 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
63091790 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
63091810 TTACAACTTTACAA
1 TCACAA-TTTACAA
63091824 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:63099077 original size:18 final size:18
Alignment explanation
Indices: 63099054--63099088 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
63099044 ATGGTATAGA
63099054 GGAAGCTACTTGGGAACC
1 GGAAGCTACTTGGGAACC
63099072 GGAAGCTACTTGGGAAC
1 GGAAGCTACTTGGGAAC
63099089 TGAAGGATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.20, G:0.34, T:0.17
Consensus pattern (18 bp):
GGAAGCTACTTGGGAACC
Found at i:63099157 original size:40 final size:40
Alignment explanation
Indices: 63099102--63099186 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
63099092 AGGATACTAT
63099102 GAGGAAGCAATACCCGAATCTTTTTACTGGTAAGATTTTC
1 GAGGAAGCAATACCCGAATCTTTTTACTGGTAAGATTTTC
63099142 GAGGAAGCAATACCCGAATCTTTTTACTGGTAAGATTTTC
1 GAGGAAGCAATACCCGAATCTTTTTACTGGTAAGATTTTC
63099182 GAGGA
1 GAGGA
63099187 CGAAAATTCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (40 bp):
GAGGAAGCAATACCCGAATCTTTTTACTGGTAAGATTTTC
Found at i:63102583 original size:40 final size:39
Alignment explanation
Indices: 63102528--63102679 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 39
63102518 CGGATGATAA
* * *
63102528 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
63102568 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
63102608 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * * *
63102648 CTGGGCTATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63102680 AGCTATATCC
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 99 0.99
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:63102661 original size:80 final size:80
Alignment explanation
Indices: 63102528--63102705 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
63102518 CGGATGATAA
* * ** *
63102528 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTCG
*
63102593 TGCGAGTTA-CTATAT
66 AGCGAG-TAGCTATAT
* * * *
63102608 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCTGGGCTATGTCCCGAAGGCATTCG
1 CCGGGTTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTCG
63102673 AGCGAGTAGCTATAT
66 AGCGAGTAGCTATAT
* *
63102688 CC-GGTTAAATCCCAAAGG
1 CCGGGTTAAGTCCCGAAGG
63102706 TACCTGGCTT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 16 0.19
80 69 0.81
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGTTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTCG
AGCGAGTAGCTATAT
Found at i:63106093 original size:22 final size:21
Alignment explanation
Indices: 63106054--63106094 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
63106044 CTCTTAACAC
*
63106054 AGAGGCACACACCTGTGTGGG
1 AGAGGCACACACCCGTGTGGG
*
63106075 AGAGGCAACACGCCCGTGTG
1 AGAGGC-ACACACCCGTGTG
63106095 ACATTTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.24, C:0.27, G:0.37, T:0.12
Consensus pattern (21 bp):
AGAGGCACACACCCGTGTGGG
Found at i:63108582 original size:40 final size:40
Alignment explanation
Indices: 63108537--63108728 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
63108527 ATAACCACAA
*
63108537 GCACAATTGCCTTCGGGTCTTAACCCTGG-TATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCC-GGATATAGCAACTC
* *
63108577 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
63108617 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
63108657 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
63108697 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
63108729 CATTCAAATG
Statistics
Matches: 142, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 3 0.02
40 135 0.95
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:63108621 original size:80 final size:79
Alignment explanation
Indices: 63108508--63108727 Score: 230
Period size: 80 Copynumber: 2.8 Consensus size: 79
63108498 ACCCAAGTTT
* * * * * * * *
63108508 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCTGG-TATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCC-GGATAAAA
*
63108571 CAACTCGCACAAATGC
65 C-ACTAGCACAAATGC
* * * *
63108587 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAA
*
63108651 TCACTAGCATAAATGC
65 -CACTAGCACAAATGC
* * *
63108667 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATA
63108728 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
79 14 0.12
80 98 0.84
81 5 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAAC
ACTAGCACAAATGC
Found at i:63120804 original size:21 final size:21
Alignment explanation
Indices: 63120774--63120813 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63120764 TAACGGGATT
63120774 GCTGACGTGGCAAGTTAACCA
1 GCTGACGTGGCAAGTTAACCA
* *
63120795 GCTGATGTGGGAAGTTAAC
1 GCTGACGTGGCAAGTTAAC
63120814 TTGCCACGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.23
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACCA
Found at i:63121297 original size:24 final size:24
Alignment explanation
Indices: 63121260--63121333 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
63121250 TTATGGTTAT
*
63121260 TTCT-ATTTCAATTTTAATTTCGA
1 TTCTGATTTCGATTTTAATTTCGA
*
63121283 TTCTGATTTCGATTTTAATTTGGA
1 TTCTGATTTCGATTTTAATTTCGA
* * * *
63121307 TTTTGATTTTGATTTTGATTTTGA
1 TTCTGATTTCGATTTTAATTTCGA
63121331 TTC
1 TTC
63121334 CAATTTTGAT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 4 0.09
24 39 0.91
ACGTcount: A:0.20, C:0.08, G:0.12, T:0.59
Consensus pattern (24 bp):
TTCTGATTTCGATTTTAATTTCGA
Found at i:63121409 original size:6 final size:6
Alignment explanation
Indices: 63121270--63121393 Score: 104
Period size: 6 Copynumber: 20.7 Consensus size: 6
63121260 TTCTATTTCA
* * * * * *
63121270 ATTTTA ATTTCG ATTCTG ATTTCG ATTTTA ATTTGG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
*** * * * * *
63121318 ATTTTG ATTTTG ATTCCA ATTTTG ATCTCG ATTTAG ATTTAG AATTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* *
63121366 ATTTTG ATTTGG ATTTGG ATTTTG ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTT
63121394 AGGGTTATTT
Statistics
Matches: 92, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 92 1.00
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (6 bp):
ATTTTG
Found at i:63121489 original size:48 final size:47
Alignment explanation
Indices: 63121430--63121598 Score: 234
Period size: 48 Copynumber: 3.5 Consensus size: 47
63121420 GCCATGTGCA
*
63121430 TGATGTTTATTGCTTGT-TTCTGCCATTGTATGAATGCCATTATCAAAT
1 TGATGTGTATTG--TGTATTCTGCCATTGTATGAATGCCATTATCAAAT
*
63121478 TGATGTGTATTGTGTATATCTGTCATTGTATGAATGCCATTATCAAAT
1 TGATGTGTATTGTGTAT-TCTGCCATTGTATGAATGCCATTATCAAAT
* *
63121526 TGATGTGTATTGTGTAAATCTGCCATTGTATGAATG-CATTATCAAAC
1 TGATGTGTATTGTGT-ATTCTGCCATTGTATGAATGCCATTATCAAAT
*
63121573 TGATGTTTATTGTGTATATCTGCCAT
1 TGATGTGTATTGTGTAT-TCTGCCAT
63121599 GATGTTTATT
Statistics
Matches: 110, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
46 4 0.04
47 33 0.30
48 72 0.65
49 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.44
Consensus pattern (47 bp):
TGATGTGTATTGTGTATTCTGCCATTGTATGAATGCCATTATCAAAT
Found at i:63121584 original size:47 final size:48
Alignment explanation
Indices: 63121448--63121598 Score: 259
Period size: 48 Copynumber: 3.2 Consensus size: 48
63121438 ATTGCTTGTT
63121448 TCTGCCATTGTATGAATGCCATTATCAAATTGATGTGTATTGTGTATA
1 TCTGCCATTGTATGAATGCCATTATCAAATTGATGTGTATTGTGTATA
* *
63121496 TCTGTCATTGTATGAATGCCATTATCAAATTGATGTGTATTGTGTAAA
1 TCTGCCATTGTATGAATGCCATTATCAAATTGATGTGTATTGTGTATA
* *
63121544 TCTGCCATTGTATGAATG-CATTATCAAACTGATGTTTATTGTGTATA
1 TCTGCCATTGTATGAATGCCATTATCAAATTGATGTGTATTGTGTATA
63121591 TCTGCCAT
1 TCTGCCAT
63121599 GATGTTTATT
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 34 0.35
48 63 0.65
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (48 bp):
TCTGCCATTGTATGAATGCCATTATCAAATTGATGTGTATTGTGTATA
Found at i:63123664 original size:43 final size:43
Alignment explanation
Indices: 63123573--63123792 Score: 333
Period size: 43 Copynumber: 5.2 Consensus size: 43
63123563 TTGCTGATCA
* * *
63123573 CATGCACTGATTGTTTGAAAGCTATTGACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
63123615 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* * *
63123658 GATGCAATGATTGTTGGAAAGCTATTGACT-TTTTTTAATGTG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
63123700 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* *
63123743 CATGCAATGATTGTTGG--TG-TGTTGCCTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
63123783 CATGCAATGA
1 CATGCAATGA
63123793 GTTTTTTTTA
Statistics
Matches: 165, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
40 30 0.18
41 1 0.01
42 66 0.40
43 68 0.41
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
Found at i:63123702 original size:85 final size:85
Alignment explanation
Indices: 63123573--63123792 Score: 347
Period size: 85 Copynumber: 2.6 Consensus size: 85
63123563 TTGCTGATCA
* *
63123573 CATGCACTGATTGTTTGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
1 CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
63123638 GTTGACTATTTTTTAATATG
66 GTTGACTATTTTTTAATATG
* *
63123658 GATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATGTGCATGCAATGATTGTTGGAAAGCT
1 CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
63123723 GTTGACTATTTTTTAATATG
66 GTTGACTATTTTTTAATATG
* * *
63123743 CATGCAATGATTGTTGG--TG-TGTTGCCTATTTTTTAATATGCATGCAATGA
1 CATGCAATGATTGTTGGAAAGCTATTGACT-TTTTTTAATATGCATGCAATGA
63123793 GTTTTTTTTA
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
82 6 0.05
83 22 0.18
85 97 0.78
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (85 bp):
CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTGTTGGAAAGCT
GTTGACTATTTTTTAATATG
Found at i:63124506 original size:21 final size:21
Alignment explanation
Indices: 63124482--63124535 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
63124472 AGCAAAAGGG
*
63124482 TACCCCAACTCAGTTACCTAC
1 TACCCCAACTCAGATACCTAC
63124503 TACCCCAACTCAGATACCTAC
1 TACCCCAACTCAGATACCTAC
*
63124524 TGCCCCAACTCA
1 TACCCCAACTCA
63124536 TCAAGAAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.44, G:0.06, T:0.20
Consensus pattern (21 bp):
TACCCCAACTCAGATACCTAC
Found at i:63125026 original size:59 final size:59
Alignment explanation
Indices: 63124934--63125072 Score: 215
Period size: 59 Copynumber: 2.4 Consensus size: 59
63124924 TATTTGTTAT
* * *
63124934 CCAACTGTTAAGCAATTTATATGCCAACTGTTATCTTTTCTAACTAGCAGCCATGTATA
1 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
* * *
63124993 CCAACTGTTAAGCAATTTGTATATCAATTGTTATCTTTTCTAACCAGCAGTCATGTATA
1 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
*
63125052 CCAAGTGTTAAGCAATTTGTA
1 CCAACTGTTAAGCAATTTGTA
63125073 AACAACAACA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 73 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (59 bp):
CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
Found at i:63125642 original size:17 final size:17
Alignment explanation
Indices: 63125620--63125652 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63125610 ATATTCATTT
63125620 TTCCT-CTTCTCCTTCTC
1 TTCCTCCTTCT-CTTCTC
63125637 TTCCTCCTTCTCTTCT
1 TTCCTCCTTCTCTTCT
63125653 TCTTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (17 bp):
TTCCTCCTTCTCTTCTC
Found at i:63125645 original size:12 final size:12
Alignment explanation
Indices: 63125623--63125651 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
63125613 TTCATTTTTC
63125623 CTCTT-CTCCTT
1 CTCTTCCTCCTT
63125634 CTCTTCCTCCTT
1 CTCTTCCTCCTT
63125646 CTCTTC
1 CTCTTC
63125652 TTCTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (12 bp):
CTCTTCCTCCTT
Found at i:63126785 original size:16 final size:16
Alignment explanation
Indices: 63126766--63126799 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
63126756 ATATTTTTAC
63126766 CAATTGAGATTTCTGT
1 CAATTGAGATTTCTGT
63126782 CAATTGAGATTTCTGT
1 CAATTGAGATTTCTGT
63126798 CA
1 CA
63126800 TGCCTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (16 bp):
CAATTGAGATTTCTGT
Found at i:63128319 original size:6 final size:6
Alignment explanation
Indices: 63128309--63128351 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
63128299 GGAAGAGGAA
*
63128309 GGAGAT AGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT G
1 GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT G
63128352 AAAAATCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.49, T:0.16
Consensus pattern (6 bp):
GGAGAT
Found at i:63131878 original size:34 final size:34
Alignment explanation
Indices: 63131835--63131908 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 34
63131825 CTAAGCTCAC
*
63131835 GTGAATCTCGACAAATAGTTGTCTAGATTTTATT
1 GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
63131869 GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
1 GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
*
63131903 TTGAAT
1 GTGAAT
63131909 GTGATTCAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.41
Consensus pattern (34 bp):
GTGAATCTCGACAAATAGTTGTCTAGATTTCATT
Found at i:63134679 original size:14 final size:14
Alignment explanation
Indices: 63134660--63134687 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63134650 TTGAGGTAAG
63134660 TTCGTGTGAACTAT
1 TTCGTGTGAACTAT
63134674 TTCGTGTGAACTAT
1 TTCGTGTGAACTAT
63134688 AATCGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (14 bp):
TTCGTGTGAACTAT
Found at i:63137873 original size:21 final size:21
Alignment explanation
Indices: 63137807--63137875 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
63137797 ACGGTGTGGG
63137807 TAAACCAC-AAATCGGTGCAGA
1 TAAACCACTAAAT-GGTGCAGA
* * ***
63137828 TAAAAGCTACTAAATGATATGGA
1 T-AAA-CCACTAAATGGTGCAGA
63137851 TAAACCACTAAATGGTGCAGA
1 TAAACCACTAAATGGTGCAGA
63137872 TAAA
1 TAAA
63137876 AGTTGCTAAT
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
21 17 0.49
22 6 0.17
23 8 0.23
24 4 0.11
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.20
Consensus pattern (21 bp):
TAAACCACTAAATGGTGCAGA
Found at i:63137894 original size:89 final size:90
Alignment explanation
Indices: 63137785--63137961 Score: 223
Period size: 89 Copynumber: 2.0 Consensus size: 90
63137775 TTTGCAAATG
* * * *
63137785 AAAGTTGCTAATACGGTGTGGGTAAACCAC-AAATCGGTGCAGATAAAAGCTACTAA-ATGATAT
1 AAAGTTGCTAATACGATGTGGATAAAACACTAAAT-GGTGCAGAAAAAAGCTACTAATATGATAT
* *
63137848 GGATAAACCACTAAATGGTGCAGATA
65 GGATAAACCACTAAACGGTACAGATA
* * * * *
63137874 AAAGTTGCTAATATGATGTGGATAAAACACTAAATGGTGCGGAAAAAAGTTGCTAATATGATGTG
1 AAAGTTGCTAATACGATGTGGATAAAACACTAAATGGTGCAGAAAAAAGCTACTAATATGATATG
*
63137939 GGTAAACCACTAAACGGTACAGA
66 GATAAACCACTAAACGGTACAGA
63137962 CAAGCTGCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
89 43 0.58
90 31 0.42
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (90 bp):
AAAGTTGCTAATACGATGTGGATAAAACACTAAATGGTGCAGAAAAAAGCTACTAATATGATATG
GATAAACCACTAAACGGTACAGATA
Found at i:63137897 original size:24 final size:24
Alignment explanation
Indices: 63137870--63137944 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
63137860 AAATGGTGCA
63137870 GATAAAAGTTGCTAATATGATGTG
1 GATAAAAGTTGCTAATATGATGTG
** * *
63137894 GATAAAA--CACTAA-ATGGTGCG
1 GATAAAAGTTGCTAATATGATGTG
*
63137915 GAAAAAAGTTGCTAATATGATGTG
1 GATAAAAGTTGCTAATATGATGTG
*
63137939 GGTAAA
1 GATAAA
63137945 CCACTAAACG
Statistics
Matches: 37, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
21 12 0.32
22 4 0.11
23 4 0.11
24 17 0.46
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (24 bp):
GATAAAAGTTGCTAATATGATGTG
Found at i:63137905 original size:45 final size:45
Alignment explanation
Indices: 63137785--63137961 Score: 223
Period size: 45 Copynumber: 4.0 Consensus size: 45
63137775 TTTGCAAATG
* * *
63137785 AAAGTTGCTAATACGGTGTGGGTAAACCAC-AAATCGGTGCAGATA
1 AAAGTTGCTAATATGATGTGGATAAACCACTAAAT-GGTGCAGATA
* * *
63137830 AAAGCTACTAA-ATGATATGGATAAACCACTAAATGGTGCAGATA
1 AAAGTTGCTAATATGATGTGGATAAACCACTAAATGGTGCAGATA
* * *
63137874 AAAGTTGCTAATATGATGTGGATAAAACACTAAATGGTGCGGAAA
1 AAAGTTGCTAATATGATGTGGATAAACCACTAAATGGTGCAGATA
* * *
63137919 AAAGTTGCTAATATGATGTGGGTAAACCACTAAACGGTACAGA
1 AAAGTTGCTAATATGATGTGGATAAACCACTAAATGGTGCAGA
63137962 CAAGCTGCTA
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
44 33 0.29
45 80 0.71
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (45 bp):
AAAGTTGCTAATATGATGTGGATAAACCACTAAATGGTGCAGATA
Done.