Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 189 of 373
Found at i:63525135 original size:101 final size:99
Alignment explanation
Indices: 63524952--63525135 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 99
63524942 CTGGTACGCA
* * * *
63524952 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTATACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
**
63525017 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACACGACCTAACCATCTGATACACG
* * * *
63525051 TAGTAGCCTGCACTTATTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
*
63525116 TAGTACTACACATACGACCT
64 TAGTACTACACACACGACCT
63525136 CACAATAGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 28 0.39
100 3 0.04
101 41 0.57
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACACGACCTAACCATCTGATACACG
Found at i:63535332 original size:22 final size:21
Alignment explanation
Indices: 63535293--63535334 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
63535283 CACTTAACAT
63535293 AGGGGCAAACACCCGTGTGAG
1 AGGGGCAAACACCCGTGTGAG
*
63535314 AGGGGCAACACGCCCGTGTGA
1 AGGGGCAA-ACACCCGTGTGA
63535335 CCATTTAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.26, C:0.26, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGGCAAACACCCGTGTGAG
Found at i:63538488 original size:49 final size:49
Alignment explanation
Indices: 63538428--63538545 Score: 148
Period size: 49 Copynumber: 2.4 Consensus size: 49
63538418 TGTGTGTTAG
* *
63538428 TGTAAGGCCTGTCTGGGACATGGCATCGACATCGATAAAT-AAGAGCCAA
1 TGTAAGACCTGTCTGGGACAAGGCATCGACATCGATAAATGAA-AGCCAA
* * * * *
63538477 TGTAAGACCTGTCTGGGACAAGGCATCGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACAAGGCATCGACATCGATAAATGAAAGCCAA
*
63538526 TGTAAGACCTGTCTAGGACA
1 TGTAAGACCTGTCTGGGACA
63538546 CGACATCAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 58 0.97
50 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACAAGGCATCGACATCGATAAATGAAAGCCAA
Found at i:63548695 original size:8 final size:8
Alignment explanation
Indices: 63548682--63548708 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
63548672 CAAGCAAAAT
63548682 ATGCATGA
1 ATGCATGA
63548690 ATGCATGA
1 ATGCATGA
63548698 ATGCATGA
1 ATGCATGA
63548706 ATG
1 ATG
63548709 TAAGAATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (8 bp):
ATGCATGA
Found at i:63548715 original size:16 final size:16
Alignment explanation
Indices: 63548682--63548715 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63548672 CAAGCAAAAT
*
63548682 ATGCATGAATGCATGA
1 ATGCATGAATGCAAGA
*
63548698 ATGCATGAATGTAAGA
1 ATGCATGAATGCAAGA
63548714 AT
1 AT
63548716 TTCCATATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (16 bp):
ATGCATGAATGCAAGA
Found at i:63569994 original size:10 final size:10
Alignment explanation
Indices: 63569979--63570008 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
63569969 CTCTACCTGG
63569979 ATCATTTCCA
1 ATCATTTCCA
63569989 ATCATTTCCA
1 ATCATTTCCA
63569999 ATCATTTCCA
1 ATCATTTCCA
63570009 TTTCTCGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (10 bp):
ATCATTTCCA
Found at i:63576832 original size:27 final size:27
Alignment explanation
Indices: 63576791--63576845 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
63576781 TGTCATGTGA
* *
63576791 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
63576818 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
63576845 A
1 A
63576846 GTTGTACCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:63577209 original size:49 final size:49
Alignment explanation
Indices: 63577081--63577214 Score: 196
Period size: 49 Copynumber: 2.7 Consensus size: 49
63577071 GGTCACGTGT
* * * *
63577081 GTAGTACTAAGTGCAGGGTACTATGTGTACAGGATAATTGGTCGCATTG
1 GTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGCCGCATGG
* *
63577130 GTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCGCATGG
1 GTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGCCGCATGG
* *
63577179 GTAGTACTAAGTGCAGGATACTATGCGTACCAGATA
1 GTAGTACTAAGTGCAGGATACTATGTGTACCGGATA
63577215 GCCTTGTCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (49 bp):
GTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGCCGCATGG
Found at i:63584613 original size:8 final size:8
Alignment explanation
Indices: 63584600--63584632 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
63584590 ATGTAATTAG
63584600 TTAAAAAA
1 TTAAAAAA
63584608 TT-AAAAA
1 TTAAAAAA
63584615 TT-AAAAA
1 TTAAAAAA
63584622 TTAAAAAA
1 TTAAAAAA
63584630 TTA
1 TTA
63584633 GTCTTGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.58
8 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (8 bp):
TTAAAAAA
Found at i:63587099 original size:80 final size:79
Alignment explanation
Indices: 63587015--63587186 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
63587005 GGACTAAGAT
*
63587015 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
63587079 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
63587095 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
63587160 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
63587174 CCGAAGGCATTTG
1 CCGAAGGCATTTG
63587187 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:63587166 original size:39 final size:39
Alignment explanation
Indices: 63586962--63587184 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
63586952 TTGAATGCTG
* * * * *
63586962 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
63587002 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
63587041 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
63587082 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
63587122 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
63587161 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63587185 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:63587204 original size:79 final size:80
Alignment explanation
Indices: 63587042--63587219 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
63587032 AGATACAAAT
* * * *
63587042 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
63587107 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
63587122 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
63587186 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
63587201 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
63587220 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:63594303 original size:80 final size:79
Alignment explanation
Indices: 63594219--63594390 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
63594209 GGACTAAGAT
*
63594219 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
63594283 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
63594299 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
63594364 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
63594378 CCGAAGGCATTTG
1 CCGAAGGCATTTG
63594391 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:63594370 original size:39 final size:39
Alignment explanation
Indices: 63594166--63594388 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
63594156 TTGAATGCTG
* * * * *
63594166 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
63594206 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
63594245 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
63594286 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
63594326 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
63594365 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63594389 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:63594408 original size:79 final size:80
Alignment explanation
Indices: 63594246--63594423 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
63594236 AGATACAAAT
* * * *
63594246 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
63594311 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
63594326 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
63594390 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
63594405 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
63594424 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:63598574 original size:131 final size:134
Alignment explanation
Indices: 63598331--63598589 Score: 337
Period size: 131 Copynumber: 1.9 Consensus size: 134
63598321 CCTACTTTTT
* * * * *
63598331 ACTATAATATGTTGTTATCTACACTTTTGACTTCGGCTTGTTTACTTCTCTGTGCCTTACCAATT
1 ACTATAATATATTGTTATCAACACTTTTGAATTCGGCTTGTTTACGTCTCTGT-CCTTACCAATG
* ** **
63598396 AGCTTTCACTACTTTAACATATTACGATGAAACTTGTTTTATGTTAATTCGTGTGTTCATCAAAA
65 AGCTTTCACTACTTTAACATATTAAGATGAAACCAGTTTTATGTTAATTCGTGCATTCATCAAAA
63598461 TGTTC
130 TGTTC
* * *
63598466 ACTATAATATATTGTTATCAACACTTTTGAATTCGTCTTGTTTA-GT-TCTGT-CTTACTAGTGA
1 ACTATAATATATTGTTATCAACACTTTTGAATTCGGCTTGTTTACGTCTCTGTCCTTACCAATGA
* *
63598528 GCTTTTACTA-TTGTAACATATTAAGATGAAACCAGTTTTATTTTAATTCGTGCATTCATCAA
66 GCTTTCACTACTT-TAACATATTAAGATGAAACCAGTTTTATGTTAATTCGTGCATTCATCAA
63598590 TAAGAACCAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
130 2 0.02
131 60 0.56
133 5 0.05
134 1 0.01
135 40 0.37
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (134 bp):
ACTATAATATATTGTTATCAACACTTTTGAATTCGGCTTGTTTACGTCTCTGTCCTTACCAATGA
GCTTTCACTACTTTAACATATTAAGATGAAACCAGTTTTATGTTAATTCGTGCATTCATCAAAAT
GTTC
Found at i:63598770 original size:17 final size:17
Alignment explanation
Indices: 63598748--63598782 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
63598738 GTTCTTGTTA
63598748 TTTTGATGATGTAAATT
1 TTTTGATGATGTAAATT
63598765 TTTTGATGATGTAAATT
1 TTTTGATGATGTAAATT
63598782 T
1 T
63598783 CTCGAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTTGATGATGTAAATT
Found at i:63611389 original size:49 final size:49
Alignment explanation
Indices: 63611261--63611448 Score: 161
Period size: 49 Copynumber: 3.8 Consensus size: 49
63611251 CAAACATGGG
* * * *
63611261 ATAAGATGCCGACGCCATGTCCTAGACATGGTCTTACACTGGCTAGTACAT-T
1 ATAAG-TGCCGATGCCATGTCCCAGACA-GGTCTTACACTGACT--TTCATAT
* * * *
63611313 A-AAGT--CGATGCCATCTTCCAAACAGGTCTTACACTGACTTTTATAT
1 ATAAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAT
* * *
63611359 ATCAAG-GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCTTTCATCT
1 AT-AAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAT
* * * *
63611408 ATTAGTGTCGATGCCATGTCCTAGATAGGTCTTACACTGAC
1 ATAAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGAC
63611449 ACACAACAAG
Statistics
Matches: 109, Mismatches: 21, Indels: 15
0.75 0.14 0.10
Matches are distributed among these distances:
45 3 0.03
46 2 0.02
47 14 0.13
48 19 0.17
49 66 0.61
50 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (49 bp):
ATAAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAT
Found at i:63633419 original size:37 final size:36
Alignment explanation
Indices: 63633373--63633444 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
63633363 AGTGACCATA
63633373 TCGGACTAAGATCCGAAGGCATT-GTGCGAGATACTAT
1 TCGGACTAAG--CCGAAGGCATTGGTGCGAGATACTAT
* *
63633410 TCGGGCTAAGCCGAAGGCATTGGTGCGAGTTACTA
1 TCGGACTAAGCCGAAGGCATTGGTGCGAGATACTA
63633445 AATCCGGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
35 11 0.34
36 12 0.38
37 9 0.28
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (36 bp):
TCGGACTAAGCCGAAGGCATTGGTGCGAGATACTAT
Found at i:63633475 original size:39 final size:38
Alignment explanation
Indices: 63633385--63633509 Score: 118
Period size: 38 Copynumber: 3.3 Consensus size: 38
63633375 GGACTAAGAT
* * *
63633385 CCGAAGGCA-TTGTGCGAGATACTAT-TCGGGCTAAG--
1 CCGAAGGCATTTGTGCGAG-TTCTATAACCGGCTAAGTC
* *
63633420 CCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTT-CTATAA-CC-GGCTAAGTC
*
63633460 CCG-AGGCATTTGTGCGAGTTCTATAACCGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTCTATAACCGGCTAAGTC
63633497 CCGAAGGCATTTG
1 CCGAAGGCATTTG
63633510 AACGAGTAGC
Statistics
Matches: 73, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
35 10 0.14
36 11 0.15
37 11 0.15
38 20 0.27
39 18 0.25
40 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGTTCTATAACCGGCTAAGTC
Found at i:63633509 original size:38 final size:40
Alignment explanation
Indices: 63633337--63633509 Score: 138
Period size: 37 Copynumber: 4.6 Consensus size: 40
63633327 CGAATGATGT
** * * *
63633337 CGGGCTAAGTCCCGAAGGC-TTTGT-TAAGTGACCATAT-
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* * *
63633374 CGGACTAAGAT-CCGAAGGCA-TTGTGCGAGATACT--ATT
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
63633411 CGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
63633449 CGGGTTAAGTCCCG-AGGCATTTGTGCGAGTT-CTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
63633487 C-GGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
63633510 AACGAGTAGC
Statistics
Matches: 111, Mismatches: 14, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
35 9 0.08
36 14 0.13
37 38 0.34
38 29 0.26
39 18 0.16
40 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:63641518 original size:39 final size:41
Alignment explanation
Indices: 63641417--63641600 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 41
63641407 TCGAATGATG
* * *
63641417 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
63641457 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
63641497 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
63641536 TCCGGGTTAAGTCCC-AAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
63641575 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63641601 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
38 1 0.01
39 68 0.54
40 46 0.37
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:63641622 original size:78 final size:78
Alignment explanation
Indices: 63641454--63641623 Score: 202
Period size: 78 Copynumber: 2.2 Consensus size: 78
63641444 CTAAGTGACC
* * *
63641454 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCCAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
**
63641519 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
63641533 AAATCCGGGTTAAG-TCCCAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATCC-GGTTAAGATCCCAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
63641596 ATTTGAACGAG-TAGCT
63 ATTGGAACGAGTTA-CT
63641612 ATATCCGGTTAA
1 ATATCCGGTTAA
63641624 ATTCCGAAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
77 2 0.03
78 41 0.53
79 33 0.42
80 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCCAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:63649690 original size:39 final size:40
Alignment explanation
Indices: 63649582--63649766 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
63649572 TCGAATGATG
* * *
63649582 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
63649621 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
63649662 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
63649701 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
63649740 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
63649767 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:63649788 original size:79 final size:79
Alignment explanation
Indices: 63649635--63649789 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
63649625 GGACTAAGAT
* * **
63649635 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
63649700 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
63649714 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
63649777 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
63649790 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:63657191 original size:39 final size:38
Alignment explanation
Indices: 63657105--63657198 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 38
63657095 ACCATCTCCG
* * * *
63657105 TCCACCCCTACACACCACGTGGGGATAAAATCAATCCA
1 TCCAACCCTACACACCAAGTAGGGATAAAATCAACCCA
* *
63657143 CCCAGCCCTACACACCAAGTATAGGGAT-AAATCAACCCA
1 TCCAACCCTACACACCAAG--TAGGGATAAAATCAACCCA
63657182 TCCAACCCTACACACCA
1 TCCAACCCTACACACCA
63657199 TAAGGTACCG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 16 0.34
39 25 0.53
40 6 0.13
ACGTcount: A:0.36, C:0.39, G:0.11, T:0.14
Consensus pattern (38 bp):
TCCAACCCTACACACCAAGTAGGGATAAAATCAACCCA
Found at i:63670819 original size:40 final size:40
Alignment explanation
Indices: 63670764--63670845 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
63670754 ATATAAGATT
63670764 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
1 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
*
63670804 TTTCCTATGCAATTTATCACCTTTTTACTTAAATTCGTTG
1 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
63670844 TT
1 TT
63670846 AAAACTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.09, T:0.50
Consensus pattern (40 bp):
TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCGTTG
Found at i:63672949 original size:12 final size:12
Alignment explanation
Indices: 63672932--63672999 Score: 59
Period size: 12 Copynumber: 5.5 Consensus size: 12
63672922 AATAATAAAT
63672932 AATATATGATAA
1 AATATATGATAA
63672944 AATATATGATAA
1 AATATATGATAA
*
63672956 AGATA-AAGATAA
1 A-ATATATGATAA
* *
63672968 ACA-ACATAATAAA
1 A-ATATATGAT-AA
63672981 TAATATATGATAA
1 -AATATATGATAA
63672994 AATATA
1 AATATA
63673000 AATAAATAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 1 0.02
12 30 0.67
13 8 0.18
14 6 0.13
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (12 bp):
AATATATGATAA
Found at i:63672968 original size:38 final size:37
Alignment explanation
Indices: 63672925--63673010 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 37
63672915 AATTTTTAAT
* *
63672925 AATAAATAATAT-ATGATAAAATATATGATAAAGATA-A
1 AATAAATAATATAAT-AAATAATATATGATAAA-ATATA
* *
63672962 AGATAAACAACATAATAAATAATATATGATAAAATATA
1 A-ATAAATAATATAATAAATAATATATGATAAAATATA
63673000 AATAAATAATA
1 AATAAATAATA
63673011 GATAATGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
37 12 0.30
38 26 0.65
39 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (37 bp):
AATAAATAATATAATAAATAATATATGATAAAATATA
Found at i:63673162 original size:24 final size:24
Alignment explanation
Indices: 63673108--63673169 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
63673098 ATGTTTATAG
*
63673108 TAAAATAAATAATATATAAAATATT
1 TAAAATAAATAA-ATATAAAAAATT
63673133 TAAAATAAATAAATA-AAAAAATT
1 TAAAATAAATAAATATAAAAAATT
*
63673156 TAGAAATATATAAA
1 TA-AAATAAATAAA
63673170 AAAGGATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 9 0.26
24 13 0.38
25 12 0.35
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (24 bp):
TAAAATAAATAAATATAAAAAATT
Found at i:63673839 original size:18 final size:18
Alignment explanation
Indices: 63673812--63673849 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
63673802 GTATGTATTG
63673812 AAAAAAAAC-AGAAACAA
1 AAAAAAAACAAGAAACAA
*
63673829 AAAAAATAACAATAAACAA
1 AAAAAA-AACAAGAAACAA
63673848 AA
1 AA
63673850 TATCACCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.82, C:0.11, G:0.03, T:0.05
Consensus pattern (18 bp):
AAAAAAAACAAGAAACAA
Found at i:63674464 original size:17 final size:17
Alignment explanation
Indices: 63674442--63674474 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63674432 TAAATGGAAT
*
63674442 GTTTAATTTTATTTTTC
1 GTTTAATTTCATTTTTC
63674459 GTTTAATTTCATTTTT
1 GTTTAATTTCATTTTT
63674475 AATTTTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (17 bp):
GTTTAATTTCATTTTTC
Found at i:63674789 original size:79 final size:80
Alignment explanation
Indices: 63674599--63674802 Score: 223
Period size: 80 Copynumber: 2.6 Consensus size: 80
63674589 AGTCTTGAGT
* ** * * * **
63674599 TCTTCGATCTGCTCCCCGTTGAATACAGAGACGCCCCAATCATCTTGAATCAGCCTTGATGAAGG
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTTGAATCAGCCTCGACAAAGG
63674664 TCAGATCTACTAATG
66 TCAGATCTACTAATG
* ** * * * * *
63674679 TCTTCGATTTGCTCTCTATCCATTACAGAGATGCCCAAATCATCTTGGATCTGTCTCGACAAAGG
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTTGAATCAGCCTCGACAAAGG
*
63674744 TCAGATCTGCT-ATG
66 TCAGATCTACTAATG
* *
63674758 TCTTCGATTTGCTCCCCGTCAAAAATAGAGATG-CCAAATCATCTT
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTT
63674803 CTTGGTTTTA
Statistics
Matches: 101, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 12 0.12
79 29 0.29
80 60 0.59
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (80 bp):
TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATCTTGAATCAGCCTCGACAAAGG
TCAGATCTACTAATG
Found at i:63674871 original size:44 final size:44
Alignment explanation
Indices: 63674823--63674907 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
63674813 CTCCCCATCG
* *
63674823 AATACGGAGATGCCAATTCTG-TCATCTTGGATCTGCTCTCTTAA
1 AATACAGAGATGCCAAATCTGCT-ATCTTGGATCTGCTCTCTTAA
*
63674867 AATACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCT
1 AATACAGAGATGCCAAATCTGCTATCTTGGATCTGCTCTCT
63674908 GACAATAATG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTGCTATCTTGGATCTGCTCTCTTAA
Found at i:63675702 original size:35 final size:35
Alignment explanation
Indices: 63675663--63675735 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
63675653 ACACATTCTT
63675663 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
63675698 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
63675733 TAT
1 TAT
63675736 CACATACCTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:63679743 original size:29 final size:29
Alignment explanation
Indices: 63679709--63679808 Score: 114
Period size: 29 Copynumber: 3.4 Consensus size: 29
63679699 TGAAGAACTT
63679709 GCACACACAGTGCCTCAATTACCGATCTC
1 GCACACACAGTGCCTCAATTACCGATCTC
* * **
63679738 GCACACATAGTG-CTCAGTTAAAGGAAT-TC
1 GCACACACAGTGCCTCAATT-ACCG-ATCTC
*
63679767 GCACACACAGTGCCTCAATTACTGATCTC
1 GCACACACAGTGCCTCAATTACCGATCTC
*
63679796 GCACACATAGTGC
1 GCACACACAGTGC
63679809 TCGGTTAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
28 8 0.14
29 42 0.72
30 8 0.14
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (29 bp):
GCACACACAGTGCCTCAATTACCGATCTC
Found at i:63679794 original size:58 final size:57
Alignment explanation
Indices: 63679672--63679840 Score: 277
Period size: 58 Copynumber: 2.9 Consensus size: 57
63679662 GTGCCCACTG
*
63679672 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTCAATT
*
63679729 ACCGATCTCGCACACATAGTGCTCAGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
*
63679787 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
63679841 TAATCATTCG
Statistics
Matches: 105, Mismatches: 4, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
57 31 0.30
58 72 0.69
59 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:63679828 original size:29 final size:28
Alignment explanation
Indices: 63679679--63679837 Score: 110
Period size: 29 Copynumber: 5.5 Consensus size: 28
63679669 CTGACCGATC
* *
63679679 TCGCACACATAGTGCTCGGTTGAA-GAACT
1 TCGCACACACAGTGCTCAGTT-AAGGAA-T
* **
63679708 T-GCACACACAGTGCCTCAATTACCG-AT
1 TCGCACACACAGTG-CTCAGTTAAGGAAT
*
63679735 CTCGCACACATAGTGCTCAGTTAAAGGAAT
1 -TCGCACACACAGTGCTCAGTT-AAGGAAT
* **
63679765 TCGCACACACAGTGCCTCAATTACTG-AT
1 TCGCACACACAGTG-CTCAGTTAAGGAAT
* *
63679793 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCAGTT-AAGGAAT
*
63679823 TTGCACACACAGTGC
1 TCGCACACACAGTGC
63679838 CTCTAATCAT
Statistics
Matches: 101, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
27 1 0.01
28 27 0.27
29 63 0.62
30 10 0.10
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (28 bp):
TCGCACACACAGTGCTCAGTTAAGGAAT
Found at i:63680055 original size:43 final size:43
Alignment explanation
Indices: 63680006--63680276 Score: 470
Period size: 43 Copynumber: 6.3 Consensus size: 43
63679996 CACCGGTATT
* *
63680006 AAGCCTGCTAGGCACGAAGACCTGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
63680049 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
63680092 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* *
63680135 AAGCCTGCTAGGCACGAAGGCCCAAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* *
63680178 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCAGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
63680221 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
63680264 AAGCCTGCTAGGC
1 AAGCCTGCTAGGC
63680277 TACACATCAC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 218 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:63680224 original size:129 final size:129
Alignment explanation
Indices: 63680006--63680330 Score: 478
Period size: 129 Copynumber: 2.6 Consensus size: 129
63679996 CACCGGTATT
**
63680006 AAGCCTGCTAGGCACGAAGACCTGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* * *
63680071 CGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
66 CGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* *
63680135 AAGCCTGCTAGGCACGAAGGCCCAAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
63680200 CGAATACACATCATCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
66 CGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
63680264 AAGCCTGCT----A-G--G---C---TACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
63680316 CTAATACACATCACC
66 CGAATACACATCACC
63680331 GAGTTTTATG
Statistics
Matches: 185, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
116 51 0.28
119 1 0.01
122 1 0.01
124 1 0.01
125 1 0.01
129 130 0.70
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.12
Consensus pattern (129 bp):
AAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:63680283 original size:30 final size:30
Alignment explanation
Indices: 63680247--63680306 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
63680237 AAGGCCCGAA
63680247 TACACATCACCGGCACGAAGCCTGCTAGGC
1 TACACATCACCGGCACGAAGCCTGCTAGGC
63680277 TACACATCACCGGCACGAAGCCTGCTAGGC
1 TACACATCACCGGCACGAAGCCTGCTAGGC
63680307 ACGAAGGCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.37, G:0.23, T:0.13
Consensus pattern (30 bp):
TACACATCACCGGCACGAAGCCTGCTAGGC
Found at i:63681767 original size:35 final size:35
Alignment explanation
Indices: 63681728--63681800 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
63681718 ACACATTCTT
63681728 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
*
63681763 TATTCTTGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
63681798 TAT
1 TAT
63681801 ATCACATACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:63684645 original size:44 final size:44
Alignment explanation
Indices: 63684582--63684749 Score: 243
Period size: 44 Copynumber: 3.8 Consensus size: 44
63684572 TCGGGCTGTT
63684582 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
*
63684626 ACAATACAGAGATGCCAAATCTGCTATCTGT-GATCTGCTCTCTG
1 ACAATACAGAGATGCCAAATCTGCTATCT-TCGATCTGTTCTCTG
* *
63684670 ACAATACAGAGATGTCAAATCTGCTATCTTTGAT-TCGCTT-TCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCT-G-TTCTCTG
* *
63684714 ACAATACAAAGATGCCAAATCTTCTATCTTCGATCT
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
63684750 TGTAACACCC
Statistics
Matches: 112, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
43 2 0.02
44 107 0.96
45 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
Found at i:63686275 original size:40 final size:40
Alignment explanation
Indices: 63686210--63686384 Score: 278
Period size: 40 Copynumber: 4.4 Consensus size: 40
63686200 CGGATGTAAC
* * ** *
63686210 AACCAGCACGAATGCCTTCGAGACTTAACCTAGTAATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
63686250 AACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
63686290 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
63686330 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
63686370 AACCCGCACGAATGC
1 AACCCGCACGAATGC
63686385 TGTGCACATA
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:63697565 original size:181 final size:181
Alignment explanation
Indices: 63697261--63697621 Score: 686
Period size: 181 Copynumber: 2.0 Consensus size: 181
63697251 AGTTTTTAAT
63697261 CCTTGATTTTCCTTCTCTAGGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
1 CCTTGATTTTCCTTCTCTAGGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
* * *
63697326 CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTGCTCTGAAGATCTCCCTAATCCGA
66 CTCGACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
63697391 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
131 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
*
63697442 CCTTGATTTTCCTTCTCTAGGGCTTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
1 CCTTGATTTTCCTTCTCTAGGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
63697507 CTCGACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
66 CTCGACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
63697572 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCT
131 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCT
63697622 CAATCTTTCT
Statistics
Matches: 176, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
181 176 1.00
ACGTcount: A:0.17, C:0.30, G:0.15, T:0.39
Consensus pattern (181 bp):
CCTTGATTTTCCTTCTCTAGGGCCTGATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
CTCGACTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
Found at i:63700770 original size:32 final size:32
Alignment explanation
Indices: 63700709--63700781 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
63700699 TTAAAATTAT
*
63700709 AATAATA-AAGATAAAGATAAACAACATAATA
1 AATAATATATGATAAAGATAAACAACATAATA
* *
63700740 AATAATATATGATAAAATATAAATAA-ATAATA
1 AATAATATATGAT-AAAGATAAACAACATAATA
*
63700772 GATAATATAT
1 AATAATATAT
63700782 ATATTAGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 7 0.19
32 19 0.53
33 10 0.28
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.27
Consensus pattern (32 bp):
AATAATATATGATAAAGATAAACAACATAATA
Found at i:63700836 original size:9 final size:9
Alignment explanation
Indices: 63700822--63700874 Score: 51
Period size: 9 Copynumber: 6.2 Consensus size: 9
63700812 TAAAATAAAT
63700822 AATATATAA
1 AATATATAA
63700831 AATATATAA
1 AATATATAA
*
63700840 AATAAAT-A
1 AATATATAA
*
63700848 AATAAAT-A
1 AATATATAA
63700856 AAT-T-TAGA
1 AATATATA-A
63700864 AATATATAA
1 AATATATAA
63700873 AA
1 AA
63700875 AAGGATTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
6 1 0.03
8 16 0.42
9 19 0.50
10 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
AATATATAA
Found at i:63700858 original size:25 final size:26
Alignment explanation
Indices: 63700807--63700857 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
63700797 ACATAATGTT
*
63700807 TATAGTAAAATAAATAATATATAAAA
1 TATAGTAAAATAAATAATAAATAAAA
63700833 TATA-TAAAATAAATAAATAAATAAA
1 TATAGTAAAATAAAT-AATAAATAAA
63700858 TTTAGAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (26 bp):
TATAGTAAAATAAATAATAAATAAAA
Found at i:63701537 original size:17 final size:18
Alignment explanation
Indices: 63701515--63701553 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
63701505 TGTATGTATT
63701515 GAAAAAAAAAC-AGAAAC
1 GAAAAAAAAACAAGAAAC
*
63701532 GAAAAAATAACAAGAAAC
1 GAAAAAAAAACAAGAAAC
63701550 -AAAA
1 GAAAA
63701554 TATCACATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.77, C:0.10, G:0.10, T:0.03
Consensus pattern (18 bp):
GAAAAAAAAACAAGAAAC
Found at i:63702168 original size:17 final size:17
Alignment explanation
Indices: 63702146--63702178 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63702136 TAAGTGGACT
*
63702146 GTTTAATTTTATTTTTC
1 GTTTAATTTCATTTTTC
63702163 GTTTAATTTCATTTTT
1 GTTTAATTTCATTTTT
63702179 TAATTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (17 bp):
GTTTAATTTCATTTTTC
Found at i:63706159 original size:13 final size:15
Alignment explanation
Indices: 63706141--63706177 Score: 51
Period size: 13 Copynumber: 2.5 Consensus size: 15
63706131 TGAACACTTT
63706141 TGTTTTATT-TT-TA
1 TGTTTTATTATTATA
63706154 TGTTTTATTATTATA
1 TGTTTTATTATTATA
63706169 TGTTATTAT
1 TGTT-TTAT
63706178 ACATTTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.43
14 2 0.10
15 6 0.29
16 4 0.19
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.70
Consensus pattern (15 bp):
TGTTTTATTATTATA
Found at i:63708200 original size:43 final size:43
Alignment explanation
Indices: 63708131--63708395 Score: 345
Period size: 43 Copynumber: 6.2 Consensus size: 43
63708121 CATTTTTTAA
* *
63708131 TTGGCATCGATATGTGATTATGTGTAAGACGACGTCTGGGACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACG
* * * *
63708174 TTAGCATGGATATGTGATTATGTGTAAGACCAAGTCTGGGACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACG
* *
63708217 TTGGCATCGATATGTGATTACGTGTAAAACCACGTCTGGGACA
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACG
* *
63708260 TTGGCATCGATATGTGATTACGTGTAAAACCACGTCTAGGACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACG
* * *
63708303 TTGGCATCGATATGTGATTACGTGTAAGACC-CTATTTGGGATAG
1 TTGGCATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGA-CG
* * **
63708347 -TGGCATCGATATGTGATTACATGTAAGACCACATCTGGGGTG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACG
63708389 TTGGCAT
1 TTGGCAT
63708396 TGTACGATAT
Statistics
Matches: 197, Mismatches: 21, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
42 2 0.01
43 193 0.98
44 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACG
Found at i:63708589 original size:19 final size:18
Alignment explanation
Indices: 63708565--63708608 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
63708555 GATGCTAATT
63708565 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
* *
63708584 ATATATATGTATATGAAA
1 ATATATATGCAAATGAAA
63708602 AGTATAT
1 A-TATAT
63708609 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:63712628 original size:28 final size:28
Alignment explanation
Indices: 63712542--63712629 Score: 99
Period size: 28 Copynumber: 3.1 Consensus size: 28
63712532 GTGACAGGGT
* *
63712542 CACCAAATACAGATAA-TCGTGGCAGAGC
1 CACCAGAT-CAGATAATTTGTGGCAGAGC
*
63712570 CACCAGAAT-AGATATATATGTGGCAGAGC
1 CACCAG-ATCAGATA-ATTTGTGGCAGAGC
*
63712599 CACCAGATCAGATAATTTGTGGCATAGC
1 CACCAGATCAGATAATTTGTGGCAGAGC
63712627 CAC
1 CAC
63712630 TAGGACGCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.10
28 23 0.45
29 23 0.45
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (28 bp):
CACCAGATCAGATAATTTGTGGCAGAGC
Found at i:63735587 original size:41 final size:40
Alignment explanation
Indices: 63735534--63735703 Score: 159
Period size: 41 Copynumber: 4.2 Consensus size: 40
63735524 AGTCCGACTC
*
63735534 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
** * * *
63735573 TTAGACTACTGGCTCGCAGGCCCTTCG-GAACTAAGTTCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCTCGGA
* * *
63735613 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
63735658 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
63735697 TTTAGAC
1 -TTAGAC
63735704 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
39 5 0.05
40 17 0.16
41 51 0.48
42 20 0.19
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:63738008 original size:22 final size:21
Alignment explanation
Indices: 63737973--63738048 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
63737963 AAAAGGTATC
* *
63737973 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
63737994 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
63738017 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
63738036 TGC-AATCATATCT
1 TACAAATCATATCT
63738049 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:63738033 original size:19 final size:19
Alignment explanation
Indices: 63738009--63738134 Score: 192
Period size: 19 Copynumber: 6.9 Consensus size: 19
63737999 AATCATATCT
63738009 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
63738028 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
63738046 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
63738063 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
63738082 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
63738100 GCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
63738117 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
63738135 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
17 31 0.31
18 31 0.31
19 37 0.37
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:63738065 original size:35 final size:36
Alignment explanation
Indices: 63738009--63738126 Score: 177
Period size: 35 Copynumber: 3.3 Consensus size: 36
63737999 AATCATATCT
63738009 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCAATCATA
63738046 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* * *
63738082 TCTAAGATTGCAATCATAGCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
63738117 TCTAAGATTG
1 TCTAAGATTG
63738127 TATATCATTG
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
35 35 0.46
36 16 0.21
37 25 0.33
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:63738077 original size:54 final size:54
Alignment explanation
Indices: 63738009--63738134 Score: 234
Period size: 54 Copynumber: 2.3 Consensus size: 54
63737999 AATCATATCT
*
63738009 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
63738063 TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
*
63738117 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
63738135 TGAAGATTAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATAGCTAAGATTGTATCATA
Found at i:63738142 original size:17 final size:17
Alignment explanation
Indices: 63738009--63738129 Score: 161
Period size: 17 Copynumber: 6.8 Consensus size: 17
63737999 AATCATATCT
63738009 TCTAAGATTGCATATCATA
1 TCTAAGATTG--TATCATA
*
63738028 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
63738046 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
63738063 TCTAAGATTGCATATCATA
1 TCTAAGATTG--TATCATA
*
63738082 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
*
63738100 GCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
63738117 TCTAAGATTGTAT
1 TCTAAGATTGTAT
63738130 ATCATTGAAG
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
17 34 0.37
18 31 0.34
19 27 0.29
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:63738571 original size:31 final size:31
Alignment explanation
Indices: 63738525--63738583 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
63738515 AAATCTGTTA
* *
63738525 TCTTCGATCTGCTCCCCGTCTAATACAGGCT
1 TCTTCAATCTACTCCCCGTCTAATACAGGCT
63738556 TCTTCAATCTACTCCCCGTCTAATACAG
1 TCTTCAATCTACTCCCCGTCTAATACAG
63738584 AGATGCCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.32
Consensus pattern (31 bp):
TCTTCAATCTACTCCCCGTCTAATACAGGCT
Found at i:63738596 original size:31 final size:30
Alignment explanation
Indices: 63738531--63738597 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
63738521 GTTATCTTCG
* * *
63738531 ATCTGCTCCCCGTCTAATACAGGCTTCTTCA
1 ATCTACTCCCCGTCTAATACAGGATGC-TCA
63738562 ATCTACTCCCCGTCTAATACAGAGATGC-CAA
1 ATCTACTCCCCGTCTAATACAG-GATGCTC-A
63738593 ATCTA
1 ATCTA
63738598 TTATCTCTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 1 0.03
31 27 0.87
32 3 0.10
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (30 bp):
ATCTACTCCCCGTCTAATACAGGATGCTCA
Found at i:63738617 original size:76 final size:76
Alignment explanation
Indices: 63738486--63738628 Score: 216
Period size: 76 Copynumber: 1.9 Consensus size: 76
63738476 GGAAGGCGAT
* * * *
63738486 ATCTGCTCCCTGTCTAATACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATCTATTATCTTCGATCTGCTCCCCGTCTAATAC
63738551 AGGCTTCTTCA
66 AGGCTTCTTCA
* *
63738562 ATCTACTCCCCGTCTAATACAGAGATGCCAAATCTATTATC-TCTGATTTGCTCCCCGTCTAATA
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATCTATTATCTTC-GATCTGCTCCCCGTCTAATA
63738626 CAG
65 CAG
63738629 AGATGCCAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 2 0.03
76 58 0.97
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (76 bp):
ATCTACTCCCCGTCTAATACAGAGACGCCAAATCTATTATCTTCGATCTGCTCCCCGTCTAATAC
AGGCTTCTTCA
Found at i:63738801 original size:78 final size:78
Alignment explanation
Indices: 63738672--63739041 Score: 510
Period size: 78 Copynumber: 4.7 Consensus size: 78
63738662 ATGTAAACAC
* * *
63738672 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
63738737 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
63738750 ATGAAGGTCCA-ATGTATTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGAT-CAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
63738814 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
63738828 ATGAAGATCATATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
63738893 TAGATCTACTTCA
66 TGGATCTGCTTCA
* * * *
63738906 ATGAAGGTCTA-ATCTATTATTTCTTCGATCTGCTCCCCGTATAATACAGAGATGCCAAATCATC
1 ATGAAGATC-AGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
63738970 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
63738984 ATGAAGATCAGATTTGCTGTGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
1 ATGAAGATCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
63739042 GTCTGTTTCT
Statistics
Matches: 258, Mismatches: 30, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
77 3 0.01
78 253 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGATCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:63738956 original size:156 final size:156
Alignment explanation
Indices: 63738672--63739041 Score: 605
Period size: 156 Copynumber: 2.4 Consensus size: 156
63738662 ATGTAAACAC
* * *
63738672 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * *
63738737 TGGATCTGCTTCAATGAAGGTCCAATGTATTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGA
66 TAGATCTACTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTGCTCCCCGTATAATACAGAGA
63738802 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
*
63738828 ATGAAGATCATATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
63738893 TAGATCTACTTCAATGAAGGTCTAATCTATTATTTCTTCGATCTGCTCCCCGTATAATACAGAGA
66 TAGATCTACTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTGCTCCCCGTATAATACAGAGA
63738958 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
* * * **
63738984 ATGAAGATCAGATTTGCTGTGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
63739042 GTCTGTTTCT
Statistics
Matches: 198, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
156 198 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (156 bp):
ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TAGATCTACTTCAATGAAGGTCCAATCTATTATGTCTTCGATCTGCTCCCCGTATAATACAGAGA
TGCCAAATCATCTTGGATCTGCTTCA
Found at i:63739172 original size:87 final size:87
Alignment explanation
Indices: 63739071--63739434 Score: 577
Period size: 87 Copynumber: 4.2 Consensus size: 87
63739061 TCTCTGACAG
* * *** *
63739071 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCCAAATCTGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
63739136 TCTTCGATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
* * *
63739158 TATAGAGACGCCAAATCAT-TTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
* *
63739222 TCCTCAATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
* *
63739244 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACATGTGAACGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
63739309 TCTTCGATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
*
63739331 TACAGAGACGCCAAATCATCTTAGATTTGCTTTAACATAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
*
63739396 TCTTCGATCTGCTCCCTGCTAA
66 TCTTCGATCTGCTCCCTGCCAA
*
63739418 TACAAAGACGCCAAATC
1 TACAGAGACGCCAAATC
63739435 TGCTGTCTTC
Statistics
Matches: 255, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
86 78 0.31
87 177 0.69
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (87 bp):
TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATCTGCTCCCTGCCAA
Found at i:63739446 original size:44 final size:44
Alignment explanation
Indices: 63739396--63739697 Score: 256
Period size: 44 Copynumber: 6.9 Consensus size: 44
63739386 ATCAGCTATG
* * * * *
63739396 TCTTCGATCTGCTCCCTGCTAATACAAAGACGCCAAATCTGCTG
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
*
63739440 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* *
63739484 TCTTCGAACTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* *
63739528 TCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATC----A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* * ** * * * * *
63739568 TCTTGGATTTGCT-TCAACGTAA-ACACGTGAAAGCCGAATCAGTTA
1 TCTTCGATCTGCTCTCTGC-CAATACA-GAG-ACGCCAAATCTGTTA
* * * * * * *
63739613 TGTTTTTGATCTGCTCCCTGCCAAAATAGAGATGCCAAATCTGTCA
1 --TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
* * *
63739659 TCTTTGATCTGCTCCCTGACAATACAGAGACGCCAAATC
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATC
63739698 ATCTTGGATC
Statistics
Matches: 208, Mismatches: 39, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
39 5 0.02
40 16 0.08
41 7 0.03
44 150 0.72
45 1 0.00
46 11 0.05
47 14 0.07
48 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
Found at i:63739711 original size:40 final size:41
Alignment explanation
Indices: 63739620--63739711 Score: 105
Period size: 44 Copynumber: 2.2 Consensus size: 41
63739610 TTATGTTTTT
* * * *
63739620 GATCTGCTCCCTGCCAAAATAGAGATGCCAAATCTGTCATCTTT
1 GATCTGCTCCCTGACAAAACAGAGACGCCAAA--T-TCATCTTG
*
63739664 GATCTGCTCCCTGACAATACAGAGACGCCAAA-TCATCTTG
1 GATCTGCTCCCTGACAAAACAGAGACGCCAAATTCATCTTG
63739704 GATCTGCT
1 GATCTGCT
63739712 TCAGTGTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
40 15 0.35
44 28 0.65
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (41 bp):
GATCTGCTCCCTGACAAAACAGAGACGCCAAATTCATCTTG
Found at i:63740686 original size:8 final size:7
Alignment explanation
Indices: 63740667--63740729 Score: 69
Period size: 7 Copynumber: 8.9 Consensus size: 7
63740657 GGCCTCTCTA
63740667 TTTTTTC
1 TTTTTTC
63740674 TTTTTTC
1 TTTTTTC
63740681 TCTTTTTC
1 T-TTTTTC
63740689 TTTTTAT-
1 TTTTT-TC
63740696 TTTTTTC
1 TTTTTTC
63740703 TCTTTTTC
1 T-TTTTTC
63740711 --TTTTC
1 TTTTTTC
63740716 TTTTTTCC
1 TTTTTT-C
63740724 TTTTTT
1 TTTTTT
63740730 TTGAAATAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
5 5 0.10
6 1 0.02
7 22 0.45
8 21 0.43
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:63740730 original size:21 final size:21
Alignment explanation
Indices: 63740668--63740728 Score: 90
Period size: 22 Copynumber: 3.0 Consensus size: 21
63740658 GCCTCTCTAT
63740668 TTTTTCTTTTTTCTCTTTTTC
1 TTTTTCTTTTTTCTCTTTTTC
*
63740689 TTTTTATTTTTTTCTCTTTTTC
1 TTTTT-CTTTTTTCTCTTTTTC
63740711 -TTTTCTTTTTTC-CTTTTT
1 TTTTTCTTTTTTCTCTTTTT
63740729 TTTGAAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.16
20 7 0.19
21 9 0.24
22 15 0.41
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTCTTTTTTCTCTTTTTC
Found at i:63740730 original size:22 final size:21
Alignment explanation
Indices: 63740667--63740731 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 21
63740657 GGCCTCTCTA
63740667 TTTTTTCTTTTTTCTCTTTTTCT
1 TTTTTTCTTTTTTC-CTTTTT-T
* *
63740690 TTTTAT-TTTTTT-CTCTTTT
1 TTTTTTCTTTTTTCCTTTTTT
*
63740709 TCTTTTCTTTTTTCCTTTTTT
1 TTTTTTCTTTTTTCCTTTTTT
63740730 TT
1 TT
63740732 GAAATAGAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 5 0.15
20 11 0.32
21 7 0.21
22 6 0.18
23 5 0.15
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTCTTTTTTCCTTTTTT
Found at i:63749550 original size:98 final size:98
Alignment explanation
Indices: 63749381--63749573 Score: 323
Period size: 98 Copynumber: 2.0 Consensus size: 98
63749371 AATAACAACT
* **
63749381 TAAAATGATTAAACTTTTGCTAGACCTACTAGAGTTTTTAACAATGAACAAGATACTTAAAAGTT
1 TAAAATGATTAAACTTTTGCTAGAACTACTAGAGTTTTTAACAACAAACAAGATACTTAAAAGTT
63749446 TTGTAAAAGATCACTACGAGGGTTTTAATAACC
66 TTGTAAAAGATCACTACGAGGGTTTTAATAACC
* *
63749479 TAAAATGATTAAACTTTTGCTAGAACTACTTGAGTTTTTAACAACAAACAAGATACTTAAAATTT
1 TAAAATGATTAAACTTTTGCTAGAACTACTAGAGTTTTTAACAACAAACAAGATACTTAAAAGTT
* *
63749544 TTGTAAAAGATTACTACTAGGGTTTTAATA
66 TTGTAAAAGATCACTACGAGGGTTTTAATA
63749574 TAGTACGGAC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (98 bp):
TAAAATGATTAAACTTTTGCTAGAACTACTAGAGTTTTTAACAACAAACAAGATACTTAAAAGTT
TTGTAAAAGATCACTACGAGGGTTTTAATAACC
Found at i:63758897 original size:25 final size:25
Alignment explanation
Indices: 63758865--63758929 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
63758855 CTAGCTCAAG
63758865 GCCTGATAGATAACACCGGCACAAA
1 GCCTGATAGATAACACCGGCACAAA
* *
63758890 G-CTCGATAAAT-ACACTGGCACAAA
1 GCCT-GATAGATAACACCGGCACAAA
*
63758914 GCCTGACAGATAACAC
1 GCCTGATAGATAACAC
63758930 TGGCTTAAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
24 20 0.61
25 13 0.39
ACGTcount: A:0.40, C:0.28, G:0.18, T:0.14
Consensus pattern (25 bp):
GCCTGATAGATAACACCGGCACAAA
Found at i:63760573 original size:43 final size:44
Alignment explanation
Indices: 63760474--63760581 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 44
63760464 AGGTTACGAG
* *
63760474 ATGTGATTACATGTAAGACCATGTATAGGACATTGGCATCATTA
1 ATGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCAATA
* * *
63760518 AT-CGATTTCATGTAAGACCCTGT-TCAGGACAGTGGCATCAAT-
1 ATGTGATTACATGTAAGACCATGTAT-AGGACAGTGGCATCAATA
*
63760560 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
63760582 ATTTTGGATA
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
42 3 0.06
43 48 0.91
44 2 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCAATA
Found at i:63764335 original size:15 final size:15
Alignment explanation
Indices: 63764315--63764345 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63764305 TTAAAATTTC
63764315 TTAACTAAATTTTAA
1 TTAACTAAATTTTAA
63764330 TTAACTAAATTTTAA
1 TTAACTAAATTTTAA
63764345 T
1 T
63764346 ATGACCCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAACTAAATTTTAA
Found at i:63764870 original size:6 final size:7
Alignment explanation
Indices: 63764843--63764902 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
63764833 AGGATTGAGG
63764843 ATTGAAA
1 ATTGAAA
63764850 ATTCG-AA
1 ATT-GAAA
63764857 ATTGAAA
1 ATTGAAA
63764864 ATT-AAA
1 ATTGAAA
*
63764870 ATTTGAAG
1 A-TTGAAA
63764878 ATTGAAA
1 ATTGAAA
63764885 ATAT-AAA
1 AT-TGAAA
*
63764892 ATTGGAA
1 ATTGAAA
63764899 ATTG
1 ATTG
63764903 GGGATTGAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
6 6 0.14
7 33 0.75
8 5 0.11
ACGTcount: A:0.52, C:0.02, G:0.15, T:0.32
Consensus pattern (7 bp):
ATTGAAA
Found at i:63767122 original size:28 final size:28
Alignment explanation
Indices: 63767082--63767139 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
63767072 TGGATAAAAA
63767082 TTAAGTATATTTAAAATGTAAGTTGAGC
1 TTAAGTATATTTAAAATGTAAGTTGAGC
*
63767110 TTAAGTATATTTAAAATGTAAGTTGGGC
1 TTAAGTATATTTAAAATGTAAGTTGAGC
63767138 TT
1 TT
63767140 GGACTCTAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.41
Consensus pattern (28 bp):
TTAAGTATATTTAAAATGTAAGTTGAGC
Found at i:63767218 original size:25 final size:22
Alignment explanation
Indices: 63767175--63767223 Score: 62
Period size: 25 Copynumber: 2.1 Consensus size: 22
63767165 TGACACTACC
*
63767175 TTTTTATTTTATAATATGTTAT
1 TTTTTATTTTATAATATGTAAT
63767197 TTTTTATTTTTATATATTATGTAAT
1 TTTTTA-TTTTATA-A-TATGTAAT
63767222 TT
1 TT
63767224 ATATTGTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 7 0.30
24 1 0.04
25 9 0.39
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTTTATTTTATAATATGTAAT
Found at i:63773955 original size:48 final size:48
Alignment explanation
Indices: 63773895--63774060 Score: 176
Period size: 48 Copynumber: 3.5 Consensus size: 48
63773885 AAGCTAACGC
* *
63773895 CATGTTCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGATG
* * * * * *
63773943 CATGTCCCAGACATGTCTTACACTAGC-TCT-TGTCTCAATGTCGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGATG
* * * * * *
63773989 CATGTCCCAAACATGTCTTATACTGGCTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGATG
63774037 CATGTCCCAGAC-GTGTCTTACACT
1 CATGTCCCAGACAG-GTCTTACACT
63774061 GGCTCTCATG
Statistics
Matches: 95, Mismatches: 20, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 36 0.38
47 3 0.03
48 56 0.59
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGATG
Found at i:63774062 original size:48 final size:47
Alignment explanation
Indices: 63773752--63774109 Score: 212
Period size: 46 Copynumber: 7.6 Consensus size: 47
63773742 ATGCCGACGC
* * ** *
63773752 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-ATATCTCGAGGCTGATG
* * * * * *
63773801 CCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATGTTGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCT-ATATCTCGAGGCTGATG
** * * * * * * * * *
63773850 CCATGTCGTAGATAGGTCTTACACT-G-AC-ACACCAC-AAGCTAACG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGGCTGATG
* * * *
63773894 CCATGTTCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGC-TCTATATCTCGAGGCTGATG
* * *
63773943 CATGTCCCAGACATGTCTTACACTAGCTCT-TGTCTCAATG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGGCT-GATG
* * *
63773989 CATGTCCCAAACATGTCTTATACTGGCT-TAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT--ATATCTCGAGGCTGATG
* * * *
63774037 CATGTCCCAGACGTGTCTTACACTGGCTCTCAT-GCT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-ATATCTCGAGGCTGATG
* *
63774083 CATGTCCTAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
63774110 ACACATATCA
Statistics
Matches: 241, Mismatches: 56, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
44 26 0.11
45 4 0.02
46 68 0.28
47 5 0.02
48 68 0.28
49 57 0.24
50 13 0.05
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGGCTGATG
Found at i:63774083 original size:94 final size:93
Alignment explanation
Indices: 63773926--63774102 Score: 250
Period size: 94 Copynumber: 1.9 Consensus size: 93
63773916 ACTAGCTTGT
*
63773926 ATATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGTCGATGCA
1 ATATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCT-AATGGCGATGCA
63773991 TGTCCCAAACATGTCTTATACTGGCTTAA
65 TGTCCCAAACATGTCTTATACTGGCTTAA
* * * *
63774020 ATATCTCGAGGCTGATGCATGTCCCAGACGTGTCTTACACTGGCTCTCATG-CT-GTGGCTGATG
1 ATATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT--TGTCTAATGGC-GATG
*
63774083 CATGTCCTAAACATGTCTTA
63 CATGTCCCAAACATGTCTTA
63774103 CACTAGCACA
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
93 3 0.04
94 67 0.91
95 2 0.03
96 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (93 bp):
ATATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTAATGGCGATGCAT
GTCCCAAACATGTCTTATACTGGCTTAA
Found at i:63779893 original size:46 final size:46
Alignment explanation
Indices: 63779727--63779893 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 46
63779717 ATTGTGAGCT
* * * *
63779727 AGTGTAAGA-CATGTCTGGGACATGCATTAGCCACATTATGA-G-AGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTC--GA-GACGTAGCC
*
63779773 AGCGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGACGT-AGCC
* * * * *
63779820 AGTGTAA-AACATGTTTGGGACATGCATCAG-CTATGAGATGT-GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCT-CGAGACGTAGCC
63779864 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC
63779894 GGCACAAAGA
Statistics
Matches: 101, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.11
45 18 0.18
46 40 0.40
47 32 0.32
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGAGACGTAGCC
Found at i:63787437 original size:47 final size:47
Alignment explanation
Indices: 63787363--63787534 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 47
63787353 GGGTTATTGT
63787363 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCACATTGATGA
* * * *
63787409 GAGCTAGCGTAAGACCATGTCTGGGACATG--GTATCGACATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATTAGCCACATT--GATGA
* * * *
63787457 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA--GACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTGATG-A
63787504 -AG-TCAGTGTAAGACATGTCTGGGACATGCAT
1 GAGCT-AGTGTAAGACATGTCTGGGACATGCAT
63787535 CGGCTATGAG
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
45 9 0.09
46 44 0.42
47 31 0.30
48 16 0.15
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCACATTGATGA
Found at i:63787522 original size:46 final size:44
Alignment explanation
Indices: 63787462--63787574 Score: 147
Period size: 46 Copynumber: 2.5 Consensus size: 44
63787452 GATGAGTGCT
63787462 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAGACGT--GTC
* * *
63787508 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGACGTGTC
*
63787552 AGTGTAAGACCATGTCTAGGACA
1 AGTGTAAGA-CATGTCTGGGACA
63787575 CGACATCGGC
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
44 12 0.20
45 15 0.25
46 34 0.56
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGACGTGTC
Found at i:63788644 original size:13 final size:13
Alignment explanation
Indices: 63788626--63788650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63788616 TGGCCATGTG
63788626 AAGGACACGGGCC
1 AAGGACACGGGCC
63788639 AAGGACACGGGC
1 AAGGACACGGGC
63788651 GTGTGCCAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:63792844 original size:52 final size:52
Alignment explanation
Indices: 63792777--63792920 Score: 225
Period size: 52 Copynumber: 2.8 Consensus size: 52
63792767 TCTCTGACTT
* *
63792777 AGGTCACACGGCCAAGTCATAAGCCCGTGTGTTAGGCCGTCTGTAGGTGCAG
1 AGGTCACACGGCCAAGCCATACGCCCGTGTGTTAGGCCGTCTGTAGGTGCAG
* *
63792829 AGGTTACACGACCAAGCCATACGCCCGTGTGTTAGGCCGTCTGTAGGTGCAG
1 AGGTCACACGGCCAAGCCATACGCCCGTGTGTTAGGCCGTCTGTAGGTGCAG
* * *
63792881 AGGTCACACGGCCAAGCCATGCGCCCATGTGCTAGGCCGT
1 AGGTCACACGGCCAAGCCATACGCCCGTGTGTTAGGCCGT
63792921 GTGATCAATT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 83 1.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.19
Consensus pattern (52 bp):
AGGTCACACGGCCAAGCCATACGCCCGTGTGTTAGGCCGTCTGTAGGTGCAG
Found at i:63794185 original size:26 final size:26
Alignment explanation
Indices: 63794149--63794208 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
63794139 GAAGCTTCGG
*
63794149 AGAGCCATTAATCAGGAAGCTCATAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
63794175 AGAGCCTTTAATCAGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
63794201 AGAGCCAT
1 AGAGCCAT
63794209 ATATCATGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:63794214 original size:26 final size:27
Alignment explanation
Indices: 63794134--63794211 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 27
63794124 AGCGAACCAT
* *
63794134 ATCAGGAAGCT-TCGGAGAGCCAT-TA
1 ATCAGGAAGCTCACGAAGAGCCATATA
** *
63794159 ATCAGGAAGCTCATAAAGAGCC-TTTA
1 ATCAGGAAGCTCACGAAGAGCCATATA
63794185 ATCAGGAAGCTCACGAAGAGCCATATA
1 ATCAGGAAGCTCACGAAGAGCCATATA
63794212 TCATGACGCT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 12 0.28
26 28 0.65
27 3 0.07
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
ATCAGGAAGCTCACGAAGAGCCATATA
Found at i:63795240 original size:13 final size:13
Alignment explanation
Indices: 63795222--63795249 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63795212 CTTTAGTTTA
63795222 TTATTTTTCATCT
1 TTATTTTTCATCT
63795235 TTATTTTTCATCT
1 TTATTTTTCATCT
63795248 TT
1 TT
63795250 CCAATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:63797227 original size:15 final size:15
Alignment explanation
Indices: 63797207--63797237 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63797197 TCTACAAGCA
63797207 GTGACATTTACAAAG
1 GTGACATTTACAAAG
*
63797222 GTGACATTTGCAAAG
1 GTGACATTTACAAAG
63797237 G
1 G
63797238 ACTTGGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (15 bp):
GTGACATTTACAAAG
Found at i:63806970 original size:31 final size:30
Alignment explanation
Indices: 63806909--63806970 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
63806899 ATTAATGACA
* *
63806909 AGTGACTAAAATGATAAAAGTTGTAACAAC
1 AGTGACTAAAATGATAAAAGATCTAACAAC
*
63806939 AGTGGCTAAAATGATAAAAGCATCTAACAAC
1 AGTGACTAAAATGATAAAAG-ATCTAACAAC
63806970 A
1 A
63806971 TAGCCTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (30 bp):
AGTGACTAAAATGATAAAAGATCTAACAAC
Found at i:63806979 original size:31 final size:30
Alignment explanation
Indices: 63806909--63806979 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
63806899 ATTAATGACA
* * *
63806909 AGTGACTAAAATGATAAAAGTTGTAACAAC
1 AGTGCCTAAAATGATAAAAGATCTAACAAC
*
63806939 AGTGGCTAAAATGATAAAAGCATCTAACAAC
1 AGTGCCTAAAATGATAAAAG-ATCTAACAAC
63806970 A-TAGCCTAAA
1 AGT-GCCTAAA
63806980 TTTGCAAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.57
31 15 0.43
ACGTcount: A:0.49, C:0.14, G:0.15, T:0.21
Consensus pattern (30 bp):
AGTGCCTAAAATGATAAAAGATCTAACAAC
Found at i:63807580 original size:58 final size:58
Alignment explanation
Indices: 63807452--63807586 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
63807442 TTGTTATTAA
* * * * *
63807452 ATTTTAATA-ACATTATTATTAAATATATTTTTATTAAAAAAATAAATAATTTAATCAT
1 ATTTTAATATA-ATTATTATTAAATATATATTTAATAAAAAAATAAACAATTCAATAAT
* * *
63807510 ATTTTAACATAATTATTATTAAATATA-ATTTAATAAAATAATATACAATTCAATAAT
1 ATTTTAATATAATTATTATTAAATATATATTTAATAAAAAAATAAACAATTCAATAAT
63807567 ATTCTTAATATAATTATTAT
1 ATT-TTAATATAATTATTAT
63807587 ATGAATTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
57 26 0.39
58 39 0.59
59 1 0.02
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (58 bp):
ATTTTAATATAATTATTATTAAATATATATTTAATAAAAAAATAAACAATTCAATAAT
Found at i:63812275 original size:19 final size:19
Alignment explanation
Indices: 63812251--63812290 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
63812241 CTTTACAACA
*
63812251 AAGAAAAGATGAGCAAACT
1 AAGAAAAGATGAACAAACT
63812270 AAGAAAAGATGAACAAACT
1 AAGAAAAGATGAACAAACT
63812289 AA
1 AA
63812291 CACTGAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.10, G:0.17, T:0.10
Consensus pattern (19 bp):
AAGAAAAGATGAACAAACT
Found at i:63816796 original size:17 final size:19
Alignment explanation
Indices: 63816774--63816816 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
63816764 ATGGAAATAT
63816774 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
63816791 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
63816810 AATCTTA
1 AATCTTA
63816817 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:63816806 original size:19 final size:19
Alignment explanation
Indices: 63816782--63816818 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
63816772 ATAATCTTCA
63816782 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63816801 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
63816819 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:63816844 original size:22 final size:22
Alignment explanation
Indices: 63816782--63816841 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
63816772 ATAATCTTCA
63816782 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
63816801 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
63816823 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
63816842 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:63817131 original size:17 final size:18
Alignment explanation
Indices: 63817109--63817144 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
63817099 GTTTCCCTAA
*
63817109 ATTTTTTTATAT-ATTTT
1 ATTTTTTTAAATAATTTT
63817126 ATTTTTTTAAATAATTTT
1 ATTTTTTTAAATAATTTT
63817144 A
1 A
63817145 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTAAATAATTTT
Found at i:63828951 original size:43 final size:42
Alignment explanation
Indices: 63828896--63829055 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 42
63828886 ATATCGTACA
* *
63828896 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCAAATATCG
63828939 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAATCAAATATCG
* * * * * *
63828980 ATGTCGATGTCCTAGACATGGTCTTACACGTAACCAAATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATC-AA-ATATCG
* *
63829025 ATGCCAACGTCCCAAATGTGGTCTTACACGA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA
63829056 GAACACATAT
Statistics
Matches: 95, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 25 0.26
42 14 0.15
43 26 0.27
44 5 0.05
45 25 0.26
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCAAATATCG
Found at i:63829735 original size:24 final size:25
Alignment explanation
Indices: 63829703--63829749 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
63829693 AACTAGCATC
63829703 ACATAACTC-AAATATTCATCAATG
1 ACATAACTCAAAATATTCATCAATG
63829727 ACATAACTCAAAATATTCATCAA
1 ACATAACTCAAAATATTCATCAA
63829750 AATAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (25 bp):
ACATAACTCAAAATATTCATCAATG
Found at i:63830212 original size:14 final size:15
Alignment explanation
Indices: 63830195--63830223 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63830185 TCACGAAAAT
63830195 TTCACACAT-ATAAA
1 TTCACACATAATAAA
63830209 TTCACACATAATAAA
1 TTCACACATAATAAA
63830224 CACAGAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:63835485 original size:50 final size:50
Alignment explanation
Indices: 63835410--63835693 Score: 314
Period size: 50 Copynumber: 5.8 Consensus size: 50
63835400 TGATGCTAGG
**
63835410 GAGATATGAGAGCTAGTGTAAGACCATGTCTATGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
*
63835460 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* *
63835510 GAGATATGAGA-ATAG-GTAAGACCATGTCTGGGATATGGCATCAGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTC
* * * ** *
63835558 GATAGATGAGAGCCAGTGTAAGACCATGTC-GGGACATGAAATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * * * *
63835607 GATATACGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATC-GACT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
** * * *
63835655 TTGATGTGA-A-CTAGTGTAAGACCATGTCCGGGGCATGGC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
63835694 GTCGGCACCT
Statistics
Matches: 203, Mismatches: 26, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
46 27 0.13
47 1 0.00
48 43 0.21
49 50 0.25
50 82 0.40
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
Found at i:63843299 original size:45 final size:45
Alignment explanation
Indices: 63843248--63843421 Score: 201
Period size: 45 Copynumber: 3.8 Consensus size: 45
63843238 TTGGGTGACA
*
63843248 TGTGAGCCATTGTAAGACCATGTTGGACATGGCATCGACGTTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGAT
* *
63843293 TGTGAGCCAGTATAAGACCATGTTGGACATGGCATCGGCGTTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGAT
* * *
63843338 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGTATC-A-GCTTCGACA
1 TGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGACG-TT-GA-T
*
63843386 TGTGAGCTAGTGTAAGA-CATGTCTAGGACATGGCAT
1 TGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCAT
63843422 TGGCAATTCA
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
45 64 0.56
46 3 0.03
47 30 0.26
48 17 0.15
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (45 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGAT
Found at i:63845137 original size:30 final size:30
Alignment explanation
Indices: 63845103--63845160 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
63845093 TTTCCGGGCA
* * *
63845103 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATAGTCATTTTACCAAAGTC
63845133 TAGGGGCAAAATAGTCATTTTACCAAAG
1 TAGGGGCAAAATAGTCATTTTACCAAAG
63845161 ATGTAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATAGTCATTTTACCAAAGTC
Found at i:63845602 original size:48 final size:47
Alignment explanation
Indices: 63845500--63845805 Score: 224
Period size: 47 Copynumber: 6.6 Consensus size: 47
63845490 CGATTTGTGC
* * * * *
63845500 GCCAGTGTAAGACATGTCTAGGACAT-GCATCGGC-CACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGACATACA-GATGAGA
* * * * *
63845546 GCCAGTGTAAGACCATGTCTGGGAAATGGCATCGGCATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACATACAGATGAGA
* * *
63845594 GCTC-GTGTAAGACATGTCTGGGACAT-GCATCAGCCATAC-TATGATA
1 GC-CAGTGTAAGACATGTCTGGGACATGGCATC-GACATACAGATGAGA
* *
63845640 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACATACAGATGAGA
* * *
63845688 GCCAGTGTAAGACATGTCTGGGACGT-GCAT-TAGCCT-C-GATAGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGA-CATACAGAT-GAGA
* * * *
63845733 TGGCCAGTGTAAGACGTGTCTGGGACA-CGCATCGGC-TA-AGA-GATGT
1 --GCCAGTGTAAGACATGTCTGGGACATGGCATCGACATACAGATGA-GA
*
63845779 GCTAGTGTAAGACATGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
63845806 CCTGGGACAT
Statistics
Matches: 208, Mismatches: 33, Indels: 39
0.74 0.12 0.14
Matches are distributed among these distances:
44 26 0.12
45 7 0.03
46 38 0.18
47 92 0.44
48 42 0.20
49 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCGACATACAGATGAGA
Found at i:63845669 original size:94 final size:92
Alignment explanation
Indices: 63845504--63845806 Score: 348
Period size: 94 Copynumber: 3.3 Consensus size: 92
63845494 TTGTGCGCCA
* * * *
63845504 GTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGG
* * *
63845569 AAATGGCATCGGCATCCAGACGAGGGCTC
66 ACATGGCATCGGCAT-AAGA-GAGTGCTC
63845598 GTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGG
*
63845663 ACATGGCATCGACATAGAGATGAGTGC-C
66 ACATGGCATCGGCATA-AGA-GAGTGCTC
* * * * *
63845691 AGTGTAAGACATGTCTGGGACGTGCATTAGCC-T-CGATAGAGATGGCCAGTGTAAGA-CGTGTC
1 -GTGTAAGACATGTCTGGGACATGCATCAGCCATAC--TA-TGATAGCCAGTGTAAGACCATGTC
* *
63845753 TGGGACA-CGCATCGGC-TAAGAGATGTGCTA
62 TGGGACATGGCATCGGCATAAGAGA-GTGCTC
63845783 GTGTAAGACATGTCTGGGACATGC
1 GTGTAAGACATGTCTGGGACATGC
63845807 CTGGGACATG
Statistics
Matches: 184, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
90 2 0.01
91 30 0.16
92 3 0.02
93 9 0.05
94 125 0.68
95 15 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (92 bp):
GTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCATAAGAGAGTGCTC
Found at i:63851812 original size:5 final size:5
Alignment explanation
Indices: 63851786--63851824 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
63851776 AATCAAGTAG
* * *
63851786 ATAAA ACAAA ATAGA ATGAA ATAAA ATAAA ATAAA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAA
63851825 TTTTTGGGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:63853862 original size:35 final size:35
Alignment explanation
Indices: 63853775--63853875 Score: 123
Period size: 35 Copynumber: 2.9 Consensus size: 35
63853765 TGTTTGGGTT
* *
63853775 GGACTAGCTC-TAATGAGCATTAGTGTGTTTCGGAG
1 GGACTAGCTCGT-ATGAGCATTGGTGTGTTTCAGAG
*
63853810 GGACTAGCTCTTATGAGCATTGGTGTGTTTCAGAG
1 GGACTAGCTCGTATGAGCATTGGTGTGTTTCAGAG
* * *
63853845 GGATTGGCTCGTGTGAGCATCTGGTGTGTTT
1 GGACTAGCTCGTATGAGCAT-TGGTGTGTTT
63853876 TGGTTGGATT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
35 47 0.81
36 11 0.19
ACGTcount: A:0.18, C:0.14, G:0.34, T:0.35
Consensus pattern (35 bp):
GGACTAGCTCGTATGAGCATTGGTGTGTTTCAGAG
Found at i:63857614 original size:43 final size:43
Alignment explanation
Indices: 63857490--63857652 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
63857480 GAAAAGCTCG
*
63857490 TACAATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCAAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAA
** * * * *
63857532 TATCGTTGCCACTGTCCTAGATAG-GGTCTTACAC-AAAATCAAA
1 TA-CAATGCCAATGTCCCAGA-CGTGGTCTTACACGTAAATCAAA
63857575 TACAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCA-AA
* * *
63857619 GT-CGATGGCAACGTCCCAGACGTGGTCTTACACG
1 -TACAATGCCAATGTCCCAGACGTGGTCTTACACG
63857653 ATAACACATA
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 38 0.39
44 32 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAA
Found at i:63870623 original size:21 final size:21
Alignment explanation
Indices: 63870585--63870624 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63870575 GAGAGCACAA
*
63870585 GAGTCAAAAGGAGCCAAAAAC
1 GAGTCAAAAGGAGACAAAAAC
63870606 GAGTCAAAAAGG-GACAAAA
1 GAGTC-AAAAGGAGACAAAA
63870625 CAGACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.55, C:0.15, G:0.25, T:0.05
Consensus pattern (21 bp):
GAGTCAAAAGGAGACAAAAAC
Found at i:63872299 original size:39 final size:40
Alignment explanation
Indices: 63872185--63872369 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
63872175 AGCACTTGTT
*
63872185 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
63872225 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
63872265 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63872304 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
63872345 CAAA-GCCTTCGGGACTTGGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63872370 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63872353 original size:79 final size:81
Alignment explanation
Indices: 63872185--63872369 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
63872175 AGCACTTGTT
* *
63872185 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
63872249 GATTTAGTAACTCACAC
65 GATATAGTAACTCACAC
* **
63872266 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
63872328 GATATGGTCACTTAGCA-
65 GATATAGTAACTCA-CAC
*
63872345 CAAAGCCTTCGGGACTTGGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
63872370 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.69
80 22 0.25
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTCACAC
Found at i:63874484 original size:40 final size:40
Alignment explanation
Indices: 63874421--63874641 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
63874411 ATTCGGATTG
63874421 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
63874460 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
63874500 ATAACTGGGCCAAGTCCCGAAGCCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
63874540 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
63874580 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
63874620 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
63874642 TAGTTGGTTT
Statistics
Matches: 164, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 29 0.18
40 135 0.82
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:63879625 original size:47 final size:48
Alignment explanation
Indices: 63879537--63879754 Score: 132
Period size: 47 Copynumber: 4.6 Consensus size: 48
63879527 GGAAGGTGCT
* * * *
63879537 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTC-AAGTC
1 GATGCCATGTCCCAGACATGGCCTTACACTGACTCATATCTCGAAGCC
* *
63879584 GATGCCATGTCCCAGACATGGCCTTATACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGCCTTACACTGACTCAT-ATCTCGAAGCC
* * * * ** *
63879632 GATG-CATAG-CCCAGACAT-GTCTAACACCGACTTACGTCTCGAGGCC
1 GATGCCAT-GTCCCAGACATGGCCTTACACTGACTCATATCTCGAAGCC
** * ** *
63879678 GATG-CATGTCCCA-AGCAT-ATCTTACACT-AC-CACTCGTCTCGTTGCT
1 GATGCCATGTCCCAGA-CATGGCCTTACACTGACTCA-T-ATCTCGAAGCC
* *
63879724 AATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGCCTTACACTG
63879755 GCTCTCATAA
Statistics
Matches: 135, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 52 0.39
47 60 0.44
48 18 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGCCTTACACTGACTCATATCTCGAAGCC
Found at i:63883238 original size:19 final size:19
Alignment explanation
Indices: 63883199--63883238 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
63883189 AAAATCTGAC
**
63883199 CTCTTTAAGCCAAAATTTG
1 CTCTTTAAGCCAAAAGCTG
63883218 CTCTTTAAGCCAAAAGCTG
1 CTCTTTAAGCCAAAAGCTG
63883237 CT
1 CT
63883239 TATCTCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (19 bp):
CTCTTTAAGCCAAAAGCTG
Found at i:63887231 original size:47 final size:49
Alignment explanation
Indices: 63887162--63887429 Score: 240
Period size: 46 Copynumber: 5.7 Consensus size: 49
63887152 GAAGGTGCCA
* * **
63887162 ATGCCATGTCCTAGACATGGTCTTGCACTGGCTCAT-ATCTC-AAGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCG
* * *
63887209 ATGCCATGTCCCAGACATGGTCTTACATTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCG
* * *
63887257 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCG
* * * * * *
63887303 ATG-CATGTCCTAGACAT-GTCTTACACTAGCAC-TCGTCTCGATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCG
* * *
63887349 ATACCATGTCCCAGACGTGGTCTTACACTGGCTC-TCATAATCTG--GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTC-GAAGCCG
*
63887397 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
63887430 CAATAACCCA
Statistics
Matches: 183, Mismatches: 29, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 77 0.42
47 75 0.41
48 27 0.15
49 2 0.01
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCG
Found at i:63904896 original size:59 final size:59
Alignment explanation
Indices: 63904787--63904898 Score: 136
Period size: 59 Copynumber: 1.9 Consensus size: 59
63904777 GTGCTAAACG
* * * *
63904787 ATGGTCGTAACCATCCCTTTTAATATTCGATGGTCGAAACCATCCGTTTTCATTAATAA
1 ATGGTCATAACCATCCCTTTTAATAATCGATAGTCGAAACCATCCCTTTTCATTAATAA
* * * *
63904846 ATGGTCATCACCATCCCTTTTCATAATCGATAGT-TAAAGCTATCCCTTTTCAT
1 ATGGTCATAACCATCCCTTTTAATAATCGATAGTCGAAA-CCATCCCTTTTCAT
63904899 ATTCTATGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
58 3 0.07
59 41 0.93
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.37
Consensus pattern (59 bp):
ATGGTCATAACCATCCCTTTTAATAATCGATAGTCGAAACCATCCCTTTTCATTAATAA
Found at i:63905485 original size:18 final size:18
Alignment explanation
Indices: 63905462--63905499 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
63905452 GGAAACAATC
* *
63905462 AAAATCTTTATTGGTTTT
1 AAAATCTTTAATAGTTTT
63905480 AAAATCTTTAATAGTTTT
1 AAAATCTTTAATAGTTTT
63905498 AA
1 AA
63905500 TAGTTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (18 bp):
AAAATCTTTAATAGTTTT
Found at i:63906995 original size:6 final size:6
Alignment explanation
Indices: 63906984--63907018 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
63906974 AGGATACCAA
* *
63906984 ATTTTC ATTTTC ATTTTC ATTTCC ATTTCC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
63907019 TGGAAATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTC
Found at i:63908719 original size:28 final size:28
Alignment explanation
Indices: 63908682--63908797 Score: 142
Period size: 29 Copynumber: 4.1 Consensus size: 28
63908672 AAGTCTACAT
* *
63908682 ACATGCATATGGCCCATTGGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
** *
63908710 TTATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
*
63908739 ACATTCATATGGCCCATTAGCCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
* *
63908768 ACATTTATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
63908796 AC
1 AC
63908798 TTCCACAGTC
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
28 27 0.36
29 45 0.61
30 2 0.03
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Done.