Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 190 of 373
Found at i:63909041 original size:16 final size:16
Alignment explanation
Indices: 63909020--63909052 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63909010 CAAATTTTTG
*
63909020 GCTTTTCGGCATTTCA
1 GCTTTTCGACATTTCA
63909036 GCTTTTCGACATTTCA
1 GCTTTTCGACATTTCA
63909052 G
1 G
63909053 GATTTACCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.42
Consensus pattern (16 bp):
GCTTTTCGACATTTCA
Found at i:63912122 original size:17 final size:18
Alignment explanation
Indices: 63912100--63912133 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63912090 CACATTGAAG
63912100 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
63912117 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
63912134 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:63913310 original size:57 final size:58
Alignment explanation
Indices: 63913244--63913353 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
63913234 AAGTCTACAT
**
63913244 ACATGCATATGGCCCATTAGGCCC-AATCTTATTCATATGGCCCA-TCAGGCCCAATTC
1 ACATGCATATGGCCCATTAGGCCCAAATCAAATTCATATGGCCCACT-AGGCCCAATTC
* *
63913301 ACATTCATATGGCCCATTAGGCCCAAATCAAATTTATATGGCCCACTAGGCCC
1 ACATGCATATGGCCCATTAGGCCCAAATCAAATTCATATGGCCCACTAGGCCC
63913354 TATCAATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
57 23 0.49
58 23 0.49
59 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.25
Consensus pattern (58 bp):
ACATGCATATGGCCCATTAGGCCCAAATCAAATTCATATGGCCCACTAGGCCCAATTC
Found at i:63913316 original size:29 final size:28
Alignment explanation
Indices: 63913244--63913358 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
63913234 AAGTCTACAT
* *
63913244 ACATGCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATCAGGCCCAATC
**
63913272 TTATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TC
*
63913301 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCC-AATC
* * *
63913330 AAATTTATATGGCCCA-CTAGGCCCTATC
1 ACATTCATATGGCCCATC-AGGCCCAATC
63913358 A
1 A
63913359 ATTTTACAGT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 26 0.36
29 45 0.62
30 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCATCAGGCCCAATC
Found at i:63913604 original size:16 final size:16
Alignment explanation
Indices: 63913583--63913630 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
63913573 AAACTTTTAA
*
63913583 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCAG
*
63913599 CTTTTCGGCATTTAAG
1 CTTTTCGGCATTTCAG
*
63913615 CTTTTCGACATTTCAG
1 CTTTTCGGCATTTCAG
63913631 GATTTATCGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATTTCAG
Found at i:63921141 original size:30 final size:30
Alignment explanation
Indices: 63921105--63921166 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
63921095 AATCGGAAGT
63921105 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
63921135 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
63921165 TT
1 TT
63921167 CTGCTACTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:63928188 original size:47 final size:47
Alignment explanation
Indices: 63928110--63928583 Score: 768
Period size: 47 Copynumber: 10.1 Consensus size: 47
63928100 CCCTTCGGGA
* * * * * * * *
63928110 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
63928157 CCTGTCACATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
63928204 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
63928251 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
63928298 CTAATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
63928345 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
63928392 CTTATCAAATATATACACTTTCACATTCATCACATCGGCTATGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
63928439 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
63928486 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
63928533 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
63928580 CTTA
1 CTTA
63928584 CTATCATTTC
Statistics
Matches: 403, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 403 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:63932170 original size:30 final size:30
Alignment explanation
Indices: 63932134--63932195 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
63932124 AATCGGAAGT
63932134 TTTGGCACTAAGTGTGAGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAAACTAGC
*
63932164 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAAACTAGC
63932194 TT
1 TT
63932196 CTGCTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGAGATTTAAACTAGC
Found at i:63940654 original size:39 final size:39
Alignment explanation
Indices: 63940610--63940885 Score: 426
Period size: 39 Copynumber: 7.1 Consensus size: 39
63940600 ATGCAAGACA
* *
63940610 CTGGAAATGTATCCAGGCTAAAGTCCCCCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
63940649 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
63940688 CTGGAAATATATCCGAGCAAAAGTCCGGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
63940727 CTCGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
63940766 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
63940805 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
63940844 TTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
63940883 CTG
1 CTG
63940886 ATAATATAAT
Statistics
Matches: 216, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 216 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:63952331 original size:48 final size:47
Alignment explanation
Indices: 63952225--63952407 Score: 195
Period size: 48 Copynumber: 3.8 Consensus size: 47
63952215 TTTGGGTGAT
* * * * * *
63952225 ATGTGTGCTAGTGCAAGACCATGCCTGGGACATGGCATCGACATTGAG
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCTCGAC
* * * *
63952273 ACGAGGGCTAGTGAAAGACCATGTCTGGGACATGGCATCTGCCTCGAC
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAC
* *
63952321 ATGTGAGCTAGAGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAC
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAC
* * * *
63952369 ATGTGAGCCAATGTAAGACCATGTCTAGGATATGGCATC
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
63952408 AGCAATTTAC
Statistics
Matches: 113, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
48 112 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (47 bp):
ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAC
Found at i:63962026 original size:40 final size:40
Alignment explanation
Indices: 63961835--63962019 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
63961825 TCGAATGATG
* * * *
63961835 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63961875 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63961915 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
63961954 TCCGAGTTAAGTCCTGAAGGCATTTGTGCGAGTTAGTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63961995 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63962020 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 33 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63962042 original size:79 final size:79
Alignment explanation
Indices: 63961882--63962052 Score: 190
Period size: 79 Copynumber: 2.2 Consensus size: 79
63961872 ATATCCGGAC
* **
63961882 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGT
1 TAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
63961947 TACTAAATCCGAGT
66 TACTAAATCCGAGT
* * * *
63961961 TAAG-TCCTGAAGGCATTTGTGCGAGTTAGT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACG
1 TAAGATCC-GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACG
*
63962024 AG-TAGCTAAATCTG-GT
63 AGTTA-CTAAATCCGAGT
63962040 TAA-ATTCCGAAGG
1 TAAGA-TCCGAAGG
63962053 TACGTGATTC
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
78 5 0.06
79 45 0.58
80 28 0.36
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
TACTAAATCCGAGT
Found at i:63964223 original size:46 final size:48
Alignment explanation
Indices: 63964153--63964252 Score: 134
Period size: 46 Copynumber: 2.1 Consensus size: 48
63964143 AGTTGTATTA
*
63964153 AGCTGAAACAGTAAGCTCTGACGAGCTG-A-A-CAGTAAGCTCATACG
1 AGCTGAAACAATAAGCTCTGACGAGCTGAATATCAGTAAGCTCATACG
* *
63964198 AGCTGAAAACAATAAGCTCTTACGAGCTGATATATCGGTAAGCTCATACG
1 AGCTG-AAACAATAAGCTCTGACGAGCTGA-ATATCAGTAAGCTCATACG
63964248 AGCTG
1 AGCTG
63964253 TGGTGATTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
45 5 0.11
46 21 0.45
48 1 0.02
49 1 0.02
50 19 0.40
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (48 bp):
AGCTGAAACAATAAGCTCTGACGAGCTGAATATCAGTAAGCTCATACG
Found at i:63964247 original size:26 final size:24
Alignment explanation
Indices: 63964153--63964252 Score: 109
Period size: 24 Copynumber: 4.2 Consensus size: 24
63964143 AGTTGTATTA
63964153 AGCTG-AAACAGTAAGCTC-TGACG
1 AGCTGAAAACAGTAAGCTCAT-ACG
63964176 AGCTG--AACAGTAAGCTCATACG
1 AGCTGAAAACAGTAAGCTCATACG
* *
63964198 AGCTGAAAACAATAAGCTCTTACG
1 AGCTGAAAACAGTAAGCTCATACG
* *
63964222 AGCTGATATATCGGTAAGCTCATACG
1 AGCTGA-A-AACAGTAAGCTCATACG
63964248 AGCTG
1 AGCTG
63964253 TGGTGATTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
22 20 0.30
23 6 0.09
24 21 0.32
25 1 0.02
26 18 0.27
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (24 bp):
AGCTGAAAACAGTAAGCTCATACG
Found at i:63969546 original size:42 final size:42
Alignment explanation
Indices: 63969478--63969582 Score: 99
Period size: 42 Copynumber: 2.5 Consensus size: 42
63969468 AATGCCAACA
*** *
63969478 TCCCAGAC-GTGGTCTTACATGTAATCAAACATCGATA-CTACTG
1 TCCCAGACAG-GGTCTTACACAAAATCAAACA-CGATACCGA-TG
* *
63969521 TCCCAG-CAGGGTCTTACACAAAATCAGATACGATACCGATG
1 TCCCAGACAGGGTCTTACACAAAATCAAACACGATACCGATG
*
63969562 TCCCAGACATGGTCTTACACA
1 TCCCAGACAGGGTCTTACACA
63969583 TAAAACAGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
41 13 0.25
42 32 0.62
43 7 0.13
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACAAAATCAAACACGATACCGATG
Found at i:63973141 original size:14 final size:14
Alignment explanation
Indices: 63973122--63973263 Score: 72
Period size: 14 Copynumber: 9.9 Consensus size: 14
63973112 TGTGGTATAT
63973122 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
63973136 GGTTTAAGGTTTAA
1 GGTTTAGGGTTTAA
*
63973150 GAGTTACTA--TTTTAA
1 G-GTT--TAGGGTTTAA
* * *
63973165 GGTTTATGGATTAT
1 GGTTTAGGGTTTAA
* *
63973179 GGATTTAGGGATTAT
1 GG-TTTAGGGTTTAA
* *
63973194 GGTTTATGGTTTTA
1 GGTTTAGGGTTTAA
* *
63973208 GGGTTGGGGTTTAA
1 GGTTTAGGGTTTAA
* * *
63973222 GGTCTAGGGGTTAG
1 GGTTTAGGGTTTAA
* * *
63973236 GGGTTAGGGGTTATG
1 GGTTTAGGGTTTA-A
63973251 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
63973264 TGGGTTATGT
Statistics
Matches: 98, Mismatches: 23, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
12 2 0.02
14 60 0.61
15 34 0.35
17 2 0.02
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.42
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:63973185 original size:22 final size:22
Alignment explanation
Indices: 63973160--63973212 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
63973150 GAGTTACTAT
*
63973160 TTTAAGGTTTATGGATTATGGA
1 TTTAGGGTTTATGGATTATGGA
* * *
63973182 TTTAGGGATTATGGTTTATGGT
1 TTTAGGGTTTATGGATTATGGA
63973204 TTTAGGGTT
1 TTTAGGGTT
63973213 GGGGTTTAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTTAGGGTTTATGGATTATGGA
Found at i:63973203 original size:7 final size:7
Alignment explanation
Indices: 63973114--63973291 Score: 56
Period size: 7 Copynumber: 25.0 Consensus size: 7
63973104 TTAGGGTCTG
*
63973114 TGGTATA
1 TGGTTTA
63973121 TGGTTTA
1 TGGTTTA
*
63973128 GGGTTTA
1 TGGTTTA
*
63973135 AGGTTTA
1 TGGTTTA
*
63973142 AGGTTTA
1 TGGTTTA
*
63973149 AGAGTTACTA
1 TG-GTT--TA
63973159 T--TTTA
1 TGGTTTA
*
63973164 AGGTTTA
1 TGGTTTA
*
63973171 TGGATTA
1 TGGTTTA
63973178 TGGATTTA
1 TGG-TTTA
* *
63973186 GGGATTA
1 TGGTTTA
63973193 TGGTTTA
1 TGGTTTA
63973200 TGGTTT-
1 TGGTTTA
* *
63973206 TAGGGTTG
1 T-GGTTTA
*
63973214 GGGTTTA
1 TGGTTTA
* *
63973221 AGGTCTA
1 TGGTTTA
* *
63973228 GGGGTTA
1 TGGTTTA
* *
63973235 GGGGTTA
1 TGGTTTA
* *
63973242 GGGGTTA
1 TGGTTTA
63973249 TGGGTTTA
1 T-GGTTTA
*
63973257 GGGTTTA
1 TGGTTTA
*
63973264 TGGGTTA
1 TGGTTTA
*
63973271 TGTTTTA
1 TGGTTTA
*
63973278 TGATTTA
1 TGGTTTA
*
63973285 AGGTTTA
1 TGGTTTA
63973292 AGGGATAAGG
Statistics
Matches: 131, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 113 0.86
8 13 0.10
10 2 0.02
ACGTcount: A:0.21, C:0.01, G:0.34, T:0.44
Consensus pattern (7 bp):
TGGTTTA
Found at i:63973277 original size:14 final size:15
Alignment explanation
Indices: 63973165--63973320 Score: 69
Period size: 14 Copynumber: 10.9 Consensus size: 15
63973155 ACTATTTTAA
* *
63973165 GGTTTATGGATTATG
1 GGTTTAGGGTTTATG
* *
63973180 GATTTAGGGATTAT-
1 GGTTTAGGGTTTATG
*
63973194 GGTTTATGGTTT-TAG
1 GGTTTAGGGTTTAT-G
* *
63973209 GG-TTGGGGTTTA-A
1 GGTTTAGGGTTTATG
* *
63973222 GGTCTAGGGGTTA-G
1 GGTTTAGGGTTTATG
* *
63973236 GGGTTAGGGGTTATG
1 GGTTTAGGGTTTATG
63973251 GGTTTAGGGTTTATG
1 GGTTTAGGGTTTATG
* *
63973266 GG-TTATGTTTTAT-
1 GGTTTAGGGTTTATG
* * *
63973279 GATTTAAGGTTTAAG
1 GGTTTAGGGTTTATG
* *
63973294 GGATAAGGG-TTA-G
1 GGTTTAGGGTTTATG
63973307 GAGTTTAGGGTTTA
1 G-GTTTAGGGTTTA
63973321 GATTAATAAT
Statistics
Matches: 104, Mismatches: 28, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
13 6 0.06
14 60 0.58
15 38 0.37
ACGTcount: A:0.20, C:0.01, G:0.38, T:0.42
Consensus pattern (15 bp):
GGTTTAGGGTTTATG
Found at i:63973304 original size:71 final size:72
Alignment explanation
Indices: 63973175--63973316 Score: 162
Period size: 71 Copynumber: 2.0 Consensus size: 72
63973165 GGTTTATGGA
* * ** ** *
63973175 TTATGGATTTAGGGATTATGGTTTATGGTTTTAGGGTTGGGGTTTAAGGTCTAGGGGTTAGG-GG
1 TTATGGATTTAGGGATTATGGGTTATGGTTTTAGAGTTAAGGTTTAAGGGATAAGGGTTAGGAGG
63973239 TTAGGGG
66 TTAGGGG
* * *
63973246 TTATGGGTTTAGGGTTTATGGGTTAT-GTTTTATGATTTAAGGTTTAAGGGATAAGGGTTAGGAG
1 TTATGGATTTAGGGATTATGGGTTATGGTTTTA-GAGTTAAGGTTTAAGGGATAAGGGTTAGGAG
*
63973310 TTTAGGG
65 GTTAGGG
63973317 TTTAGATTAA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
70 6 0.10
71 45 0.78
72 7 0.12
ACGTcount: A:0.20, C:0.01, G:0.39, T:0.41
Consensus pattern (72 bp):
TTATGGATTTAGGGATTATGGGTTATGGTTTTAGAGTTAAGGTTTAAGGGATAAGGGTTAGGAGG
TTAGGGG
Found at i:63973319 original size:7 final size:7
Alignment explanation
Indices: 63973182--63973321 Score: 70
Period size: 7 Copynumber: 19.7 Consensus size: 7
63973172 GGATTATGGA
63973182 TTTAGGG
1 TTTAGGG
* *
63973189 ATTATGG
1 TTTAGGG
*
63973196 TTTATGGT
1 TTTA-GGG
63973204 TTTAGGG
1 TTTAGGG
*
63973211 -TTGGGG
1 TTTAGGG
*
63973217 TTTAAGG
1 TTTAGGG
*
63973224 TCTAGGG
1 TTTAGGG
*
63973231 GTTAGGG
1 TTTAGGG
*
63973238 GTTAGGG
1 TTTAGGG
*
63973245 GTTATGGG
1 TTTA-GGG
63973253 TTTAGGG
1 TTTAGGG
63973260 TTTATGGG
1 TTTA-GGG
* *
63973268 -TTATGT
1 TTTAGGG
* *
63973274 TTTATGA
1 TTTAGGG
*
63973281 TTTAAGG
1 TTTAGGG
63973288 TTTAAGGG
1 TTT-AGGG
* *
63973296 ATAAGGG
1 TTTAGGG
63973303 -TTAGGAG
1 TTTAGG-G
63973310 TTTAGGG
1 TTTAGGG
63973317 TTTAG
1 TTTAG
63973322 ATTAATAATT
Statistics
Matches: 102, Mismatches: 23, Indels: 16
0.72 0.16 0.11
Matches are distributed among these distances:
6 10 0.10
7 69 0.68
8 23 0.23
ACGTcount: A:0.19, C:0.01, G:0.39, T:0.41
Consensus pattern (7 bp):
TTTAGGG
Found at i:63974215 original size:21 final size:21
Alignment explanation
Indices: 63974191--63974231 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63974181 ACCCTTTTAT
63974191 CCCCAAATTTTCCCCCTAAAC
1 CCCCAAATTTTCCCCCTAAAC
*
63974212 CCCCTAATTTTCCCCCTAAA
1 CCCCAAATTTTCCCCCTAAA
63974232 ATCATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.46, G:0.00, T:0.27
Consensus pattern (21 bp):
CCCCAAATTTTCCCCCTAAAC
Found at i:63975451 original size:36 final size:36
Alignment explanation
Indices: 63975411--63975482 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
63975401 CTTAAATGTT
63975411 AGTTTTATCCTTTTTCTTATCTAATATAATAAATAA
1 AGTTTTATCCTTTTTCTTATCTAATATAATAAATAA
63975447 AGTTTTATCCTTTTTCTTATCTAATATAATAAATAA
1 AGTTTTATCCTTTTTCTTATCTAATATAATAAATAA
63975483 GCACATTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (36 bp):
AGTTTTATCCTTTTTCTTATCTAATATAATAAATAA
Found at i:63981183 original size:18 final size:18
Alignment explanation
Indices: 63981160--63981194 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63981150 CAAGTCCGTC
63981160 TCATTAGGA-TCATCCTCT
1 TCATTA-GATTCATCCTCT
63981178 TCATTAGATTCATCCTC
1 TCATTAGATTCATCCTC
63981195 AGATTCATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.23, C:0.29, G:0.09, T:0.40
Consensus pattern (18 bp):
TCATTAGATTCATCCTCT
Found at i:63983010 original size:9 final size:9
Alignment explanation
Indices: 63982989--63983210 Score: 88
Period size: 9 Copynumber: 24.9 Consensus size: 9
63982979 TATGTATTAC
*
63982989 GTAAGTTAA
1 GTAAGTTAT
63982998 GTAAGCTT-T
1 GTAAG-TTAT
63983007 GTAAGTTAT
1 GTAAGTTAT
63983016 GTAAGTTAT
1 GTAAGTTAT
* * *
63983025 GTTA-TGAC
1 GTAAGTTAT
* *
63983033 ATACATTTAT
1 GTA-AGTTAT
*
63983043 GTAAGGTAT
1 GTAAGTTAT
63983052 GTAAGTTAT
1 GTAAGTTAT
* *
63983061 GATATGATAT
1 G-TAAGTTAT
* *
63983071 AT-ATTTAT
1 GTAAGTTAT
63983079 GT-A-TTAT
1 GTAAGTTAT
*
63983086 GTAAGTTGT
1 GTAAGTTAT
63983095 GTAAGTTAT
1 GTAAGTTAT
*
63983104 GATAAGATAT
1 G-TAAGTTAT
* *
63983114 AT-ATTTAT
1 GTAAGTTAT
*
63983122 GATATATATTTAT
1 G---TA-AGTTAT
63983135 GT-A-TTAT
1 GTAAGTTAT
*
63983142 GTAAGTTGT
1 GTAAGTTAT
63983151 GTAAGTTAT
1 GTAAGTTAT
* *
63983160 GATATGATAT
1 G-TAAGTTAT
* *
63983170 AT-ATTTAT
1 GTAAGTTAT
63983178 GT-A-TTAT
1 GTAAGTTAT
*
63983185 GTAAGTTTT
1 GTAAGTTAT
63983194 GTAAGTTAT
1 GTAAGTTAT
63983203 GTAAGTTA
1 GTAAGTTA
63983211 CTATATGATA
Statistics
Matches: 158, Mismatches: 37, Indels: 36
0.68 0.16 0.16
Matches are distributed among these distances:
7 18 0.11
8 23 0.15
9 83 0.53
10 26 0.16
11 1 0.01
13 7 0.04
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:63983053 original size:36 final size:36
Alignment explanation
Indices: 63983006--63983081 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
63982996 AAGTAAGCTT
* *
63983006 TGTAAGTTATGTAAGTTATGTTATGACATACATTTA
1 TGTAAGGTATGTAAGTTATGATATGACATACATTTA
* *
63983042 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATGTAAGTTATGATATGACATACATTTA
63983078 TGTA
1 TGTA
63983082 TTATGTAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (36 bp):
TGTAAGGTATGTAAGTTATGATATGACATACATTTA
Found at i:63983098 original size:43 final size:43
Alignment explanation
Indices: 63983039--63983203 Score: 177
Period size: 43 Copynumber: 3.5 Consensus size: 43
63983029 TGACATACAT
* *
63983039 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
*
63983082 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATATA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATG-----TA
63983130 TTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
1 -TTATGTA--A-GT----TGTGTAAGTTATGATATGATATATATTTATGTA
*
63983181 TTATGTAAGTTTTGTAAGTTATG
1 TTATGTAAGTTGTGTAAGTTATG
63983204 TAAGTTACTA
Statistics
Matches: 104, Mismatches: 5, Indels: 26
0.77 0.04 0.19
Matches are distributed among these distances:
43 50 0.48
47 2 0.02
48 3 0.03
49 7 0.07
50 7 0.07
51 3 0.03
52 2 0.02
56 30 0.29
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (43 bp):
TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
Found at i:63983127 original size:13 final size:13
Alignment explanation
Indices: 63983109--63983135 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63983099 GTTATGATAA
63983109 GATATATATTTAT
1 GATATATATTTAT
63983122 GATATATATTTAT
1 GATATATATTTAT
63983135 G
1 G
63983136 TATTATGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (13 bp):
GATATATATTTAT
Found at i:63983130 original size:56 final size:56
Alignment explanation
Indices: 63983063--63983224 Score: 244
Period size: 56 Copynumber: 3.0 Consensus size: 56
63983053 TAAGTTATGA
*
63983063 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
63983119 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
* * *
63983175 TATG-TAT-TATGTAAGT-TT-TGTAAGTTATGTAAGTTACT-ATATGATATATA
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTA-TGATATGATATATA
63983225 ATAAACATTA
Statistics
Matches: 101, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
52 29 0.29
53 3 0.03
54 7 0.07
55 3 0.03
56 59 0.58
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.49
Consensus pattern (56 bp):
TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
Found at i:63983216 original size:43 final size:43
Alignment explanation
Indices: 63983122--63983216 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 43
63983112 ATATATTTAT
*
63983122 GATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
1 GATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAA
*
63983165 GATATATATTTATGTATTATGTAAGTTTTGTAAGTTATG-TAA
1 GATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAA
*
63983207 GTTACTATAT
1 GATA-TATAT
63983217 GATATATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 5 0.10
43 43 0.90
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (43 bp):
GATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAA
Found at i:63983697 original size:37 final size:37
Alignment explanation
Indices: 63983653--63983745 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
63983643 AAATTATATT
*
63983653 AATTGATAAATATTGAAATAT-TG-AAAT-ATATTTAA
1 AATTGATAAATATTGAAATATAAGTAAATCAT-TTTAA
63983688 AATGTTGAT-AA-A-TGAAATATAAGTAAATCATTTTAA
1 AA--TTGATAAATATTGAAATATAAGTAAATCATTTTAA
63983724 AATTGATAAATATTGAAATATA
1 AATTGATAAATATTGAAATATA
63983746 TTAAAGCAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
34 13 0.27
35 6 0.12
36 14 0.29
37 16 0.33
ACGTcount: A:0.52, C:0.01, G:0.10, T:0.38
Consensus pattern (37 bp):
AATTGATAAATATTGAAATATAAGTAAATCATTTTAA
Found at i:63987198 original size:114 final size:114
Alignment explanation
Indices: 63986797--63987501 Score: 700
Period size: 114 Copynumber: 6.1 Consensus size: 114
63986787 ATCGTTTTCT
* * * * * * * * *
63986797 CCTAGCGCCGCTAAAGGCAAACCAATTGAGGCATTTTAA-CATAAACGCTATTAAAAATCAAACA
1 CCTAGCGCCGCTAAA-TCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAATA
* * * * *
63986861 AAA-TGAC-GCAGTTTTGATATAAACAGAATAAACTTTAGTGGCGTTTTTCC
65 AAACTGACACCA-TTTTGATATAAACA-AATAACCATTAGTGGCGTTTATAC
* * *
63986911 CCTAGCGCCGCTAAAGGCAAATCTATTGCGGCG-TTTAACCCTAAAACGCCACTAAAAATCCAAA
1 CCTAGCGCCGCTAAA-TCAAACCTATTGCGGCGTTTTAA-CCAAAAACGCCACTAAAAATCC-AA
* * ** * **
63986975 AAAAAATGACGGCGTTTCCATATAAACAGAATAA-CATTTAGTGGCGTTT-TATC
63 TAAAACTGACACCATTTTGATATAAACA-AATAACCA-TTAGTGGCGTTTATA-C
* * * * * * *
63987028 TCCAAGCGCCGCTAAAGGCGAAA-CTATTGCAGCATTTTACCCTAAAACGCCACTAAAAATCCGA
1 -CCTAGCGCCGCTAAA-TC-AAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAA
63987092 TAAAACT-ACACCATTTTGATATAAACGAAATAACCATTAGTGGCGTTTATAC
63 TAAAACTGACACCATTTTGATATAAAC-AAATAACCATTAGTGGCGTTTATAC
63987144 CCTAGCGCCGCTAAATCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCC-ATAA
1 CCTAGCGCCGCTAAATCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAAT-A
* *
63987208 AAACT-ACACCATTTTGATATAAACAAAATAACCATTAGTGACGTTTATAA
65 AAACTGACACCATTTTGATATAAAC-AAATAACCATTAGTGGCGTTTATAC
* *
63987258 CCTAGTGTCGCTAAATCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCC-ATAA
1 CCTAGCGCCGCTAAATCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAAT-A
* *
63987322 AAACT-ACACCGTTTTGATATAAACAAAATAACCATTAGTGGCGTTTATAA
65 AAACTGACACCATTTTGATATAAAC-AAATAACCATTAGTGGCGTTTATAC
* * *
63987372 CCTAGTGCCGCTAAATCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAAAA
1 CCTAGCGCCGCTAAATCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAATAA
* *** * * * * *
63987437 AAATGATGTCATCTAG-TATAATA-GAATAACCTTTAGTGGCGTTTGTAC
66 AACTGACACCATTTTGATATAA-ACAAATAACCATTAGTGGCGTTTATAC
*
63987485 CCTAGCGCCACTAAATC
1 CCTAGCGCCGCTAAATC
63987502 CAATGTTTTT
Statistics
Matches: 517, Mismatches: 56, Indels: 37
0.85 0.09 0.06
Matches are distributed among these distances:
113 46 0.09
114 291 0.56
115 37 0.07
116 40 0.08
117 46 0.09
118 50 0.10
119 7 0.01
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (114 bp):
CCTAGCGCCGCTAAATCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAATAA
AACTGACACCATTTTGATATAAACAAATAACCATTAGTGGCGTTTATAC
Found at i:63987852 original size:21 final size:22
Alignment explanation
Indices: 63987777--63987855 Score: 83
Period size: 21 Copynumber: 3.7 Consensus size: 22
63987767 ACACTAATTA
*
63987777 CTCTAAACCTTAAACCCCTAAC
1 CTCTAAACCTTAAACCCTTAAC
** *
63987799 C-CTATCCCTTAAACCCTAAAC
1 CTCTAAACCTTAAACCCTTAAC
*
63987820 CCCT-AACACTT-AACCCTTAAC
1 CTCTAAAC-CTTAAACCCTTAAC
63987841 CTCTAAACCTTAAAC
1 CTCTAAACCTTAAAC
63987856 TCCAACCCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
21 33 0.73
22 12 0.27
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (22 bp):
CTCTAAACCTTAAACCCTTAAC
Found at i:63987886 original size:22 final size:23
Alignment explanation
Indices: 63987859--63987911 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
63987849 CTTAAACTCC
63987859 AACCCTTAAA-CCATACA-CCATA
1 AACCCTTAAACCCATA-ATCCATA
63987881 AACCC-TAAACCCATAATCCATA
1 AACCCTTAAACCCATAATCCATA
63987903 AA-CCTTAAA
1 AACCCTTAAA
63987912 ATAGTAACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.19
Consensus pattern (23 bp):
AACCCTTAAACCCATAATCCATA
Found at i:63987952 original size:14 final size:14
Alignment explanation
Indices: 63987930--63987974 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
63987920 TCATACACTT
*
63987930 TAAACCCTAAATCA
1 TAAACCCTAAACCA
* *
63987944 TATACCCTAAACCC
1 TAAACCCTAAACCA
*
63987958 TAAACCCTAAACTA
1 TAAACCCTAAACCA
63987972 TAA
1 TAA
63987975 TGATAATTAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:63987957 original size:7 final size:7
Alignment explanation
Indices: 63987930--63987969 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
63987920 TCATACACTT
63987930 TAAACCC
1 TAAACCC
* *
63987937 TAAATCA
1 TAAACCC
*
63987944 TATACCC
1 TAAACCC
63987951 TAAACCC
1 TAAACCC
63987958 TAAACCC
1 TAAACCC
63987965 TAAAC
1 TAAAC
63987970 TATAATGATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:63988299 original size:14 final size:14
Alignment explanation
Indices: 63988275--63988315 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
63988265 TTTAAACCCC
63988275 AAACCCTAAACCAAA
1 AAACCC-AAACCAAA
*
63988290 AAACCCAAACCACA
1 AAACCCAAACCAAA
*
63988304 AATCCCAAACCA
1 AAACCCAAACCA
63988316 TAAATCTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.56, C:0.39, G:0.00, T:0.05
Consensus pattern (14 bp):
AAACCCAAACCAAA
Found at i:63988320 original size:14 final size:14
Alignment explanation
Indices: 63988282--63988321 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
63988272 CCCAAACCCT
*
63988282 AAACCAAAAAACCC
1 AAACCAAAAATCCC
*
63988296 AAACCACAAATCCC
1 AAACCAAAAATCCC
*
63988310 AAACCATAAATC
1 AAACCAAAAATC
63988322 TCAGATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.57, C:0.35, G:0.00, T:0.07
Consensus pattern (14 bp):
AAACCAAAAATCCC
Found at i:63988341 original size:7 final size:7
Alignment explanation
Indices: 63988329--63988397 Score: 50
Period size: 7 Copynumber: 9.9 Consensus size: 7
63988319 ATCTCAGATT
63988329 ATAAACC
1 ATAAACC
63988336 ATAAACC
1 ATAAACC
* *
63988343 CTAAATTC
1 ATAAA-CC
*
63988351 -TAAGCC
1 ATAAACC
* *
63988357 CTAAACT
1 ATAAACC
*
63988364 ATAAACT
1 ATAAACC
63988371 ATAAACC
1 ATAAACC
*
63988378 CTAAACC
1 ATAAACC
*
63988385 ATAACCC
1 ATAAACC
63988392 ATAAAC
1 ATAAAC
63988398 TCTAATGACA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
6 1 0.02
7 46 0.96
8 1 0.02
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.20
Consensus pattern (7 bp):
ATAAACC
Found at i:63988368 original size:21 final size:21
Alignment explanation
Indices: 63988328--63988402 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
63988318 AATCTCAGAT
* * *
63988328 TATAAACCATAAACCCTAAAT
1 TATAAACCCTAAACCATAAAC
* * *
63988349 TCTAAGCCCTAAACTATAAAC
1 TATAAACCCTAAACCATAAAC
*
63988370 TATAAACCCTAAACCATAACC
1 TATAAACCCTAAACCATAAAC
* *
63988391 CATAAACTCTAA
1 TATAAACCCTAA
63988403 TGACAGTAAT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (21 bp):
TATAAACCCTAAACCATAAAC
Found at i:63988496 original size:40 final size:38
Alignment explanation
Indices: 63988451--63988558 Score: 146
Period size: 38 Copynumber: 2.8 Consensus size: 38
63988441 GAAACTTTTT
*
63988451 GCGGCGTTTTTCAAAAAGTGTCGCTAATGCTTAATCTATA
1 GCGGCGTTTTTCAAAAAGTGCCGCTAATGC-T-ATCTATA
63988491 GCGGCGTTTTT-ATAAAAGTGCCGCTAATGCTATCTATA
1 GCGGCGTTTTTCA-AAAAGTGCCGCTAATGCTATCTATA
* * *
63988529 GCGGCGTTTTTCCAAAAGCGCCGTTAATGC
1 GCGGCGTTTTTCAAAAAGTGCCGCTAATGC
63988559 CATTAAAGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 33 0.53
39 2 0.03
40 27 0.44
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (38 bp):
GCGGCGTTTTTCAAAAAGTGCCGCTAATGCTATCTATA
Found at i:63988667 original size:40 final size:41
Alignment explanation
Indices: 63988623--63988712 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 41
63988613 TTCATAATGG
*
63988623 GCCGCTAATGGTCGACCTATAGCAGCATTTTTTA-AGAAGC
1 GCCGCTAATGCTCGACCTATAGCAGCATTTTTTACAGAAGC
* * * * * *
63988663 GCCGCTAATGCTTGATCTTTTGCGGCATTTTTTACATAAGC
1 GCCGCTAATGCTCGACCTATAGCAGCATTTTTTACAGAAGC
63988704 GCCGCTAAT
1 GCCGCTAAT
63988713 AGTGATCTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 28 0.67
41 14 0.33
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (41 bp):
GCCGCTAATGCTCGACCTATAGCAGCATTTTTTACAGAAGC
Found at i:63988719 original size:40 final size:39
Alignment explanation
Indices: 63988647--63988746 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 39
63988637 ACCTATAGCA
63988647 GCATTTTTTAAGAAGCGCCGCTAATGCTTGATCTTTTGCG
1 GCATTTTTTAAGAAGCGCCGCTAATGC-TGATCTTTTGCG
*
63988687 GCATTTTTTACATAAGCGCCGCTAATAG-TGATCTTTTGCG
1 GCATTTTTTA-AGAAGCGCCGCTAAT-GCTGATCTTTTGCG
* * *
63988727 GCGTTTGTTTTACAAGCGCC
1 GCATTT-TTTAAGAAGCGCC
63988747 ACTATAGCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
40 35 0.66
41 17 0.32
42 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (39 bp):
GCATTTTTTAAGAAGCGCCGCTAATGCTGATCTTTTGCG
Found at i:63988744 original size:81 final size:82
Alignment explanation
Indices: 63988659--63988832 Score: 178
Period size: 81 Copynumber: 2.1 Consensus size: 82
63988649 ATTTTTTAAG
* * * * * *
63988659 AAGCGCCGCTAAT-GCT-TGATCTTTTGCGGCATTTTTTACATAAGCGCCGCTAATAGT-GATCT
1 AAGCGCCGCTAATAGCTCTAATCTTTAGCGAC-TTTTTTACATAAGCGCCACTAAT-GTACAACT
* *
63988721 TTTGCGGCGTTTGTTT-TAC
64 GTTGCGGCATTT-TTTGTAC
* **
63988740 AAGCGCCACT-ATAGCTCTAATCTTTAGCGACTTTTTTATTTAAGCGCCACTAATGTACAACTGT
1 AAGCGCCGCTAATAGCTCTAATCTTTAGCGACTTTTTTACATAAGCGCCACTAATGTACAACTGT
63988804 TGCGGCATTTTTTGTAC
66 TGCGGCATTTTTTGTAC
*
63988821 AAACGCCGCTAA
1 AAGCGCCGCTAA
63988833 AAACACCGCT
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
80 7 0.09
81 56 0.75
82 12 0.16
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (82 bp):
AAGCGCCGCTAATAGCTCTAATCTTTAGCGACTTTTTTACATAAGCGCCACTAATGTACAACTGT
TGCGGCATTTTTTGTAC
Found at i:63990409 original size:19 final size:19
Alignment explanation
Indices: 63990386--63990432 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
63990376 ATTTAATCTA
*
63990386 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
63990404 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
63990424 ATTTTTATT
1 ATTTTTATT
63990433 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:63994878 original size:69 final size:70
Alignment explanation
Indices: 63994746--63994878 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
63994736 TAGTTTATTA
* * * * *
63994746 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
63994811 CTTAG
66 CTTAG
63994816 CTAATTAATATGCTACTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
63994879 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:63995689 original size:39 final size:39
Alignment explanation
Indices: 63995637--63996104 Score: 483
Period size: 40 Copynumber: 11.9 Consensus size: 39
63995627 ATTTGATGTA
* * *
63995637 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
63995676 TATTCGGACTTAAGGTCCGCAAGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
63995715 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTG
* * * *
63995755 TATCTGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAA-TG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* *
63995794 TATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
63995833 TATCTGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
63995872 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTG
* * * *
63995912 TATCCGGGCTTAAAGACCCGCAGGCTTTGTACTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* *
63995952 TATCTGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
63995991 TATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
63996031 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* *
63996071 TATCCGGACTTAAGATCAGTAGGCTTCGTGCTGG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
63996105 TACTATATTT
Statistics
Matches: 366, Mismatches: 55, Indels: 16
0.84 0.13 0.04
Matches are distributed among these distances:
38 22 0.06
39 154 0.42
40 188 0.51
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:63995767 original size:79 final size:80
Alignment explanation
Indices: 63995653--63996083 Score: 516
Period size: 79 Copynumber: 5.5 Consensus size: 80
63995643 GACTTAAGGT
* ** **
63995653 CCGCAGGCTTCGTGCTGGAATTATATTCGGACTT-AAGGTCCGCAAGCTTCATGCTGGAATTGTA
1 CCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAAGCTTTGTGCTGGAATTGTA
63995717 TCCGGGCTTAAAGAC
66 TCCGGGCTTAAAGAC
* * * *
63995732 CCGCAGGCTAT-ATGCTGGAATTATATCTGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAA-TGT
1 CCGCAGGCT-TCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAAGCTTTGTGCTGGAATTGT
* * **
63995795 ATCCTGACTT-AAGGT
65 ATCCGGGCTTAAAGAC
* * ** *
63995810 CCGCAGGCTTCGTGCTGGAATTGTATCTGGACTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTA
1 CCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAAGCTTTGTGCTGGAATTGTA
63995874 TCCGGGCTTAAAGAC
66 TCCGGGCTTAAAGAC
* * * *
63995889 CCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTACTGGAATTGT
1 CCGCAGGCT-TCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAAGCTTTGTGCTGGAATTGT
* * **
63995953 ATCTGGACTT-AAGGT
65 ATCCGGGCTTAAAGAC
* * *
63995968 CCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGAATTGTA
1 CCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAAGCTTTGTGCTGGAATTGTA
*
63996033 TCTGGGCTTAAAGAC
66 TCCGGGCTTAAAGAC
*
63996048 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAA
1 CCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAA
63996084 GATCAGTAGG
Statistics
Matches: 297, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
77 22 0.07
78 44 0.15
79 139 0.47
80 92 0.31
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAAGCTTTGTGCTGGAATTGTA
TCCGGGCTTAAAGAC
Found at i:63995923 original size:157 final size:158
Alignment explanation
Indices: 63995637--63996083 Score: 695
Period size: 157 Copynumber: 2.8 Consensus size: 158
63995627 ATTTGATGTA
* *
63995637 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTATAT-TCGGACTTAAGGTCCGCAAGCT
1 TATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCT-GGACTTAAGGTCCGCAAGCT
* *
63995701 TCATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCTGGGCTT
65 TCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTT
*
63995766 AAAGACCCGCAGGCTTTGTGCTGGAA-TG
130 AAAGACCCGCAGGCTTTGTACTGGAATTG
63995794 TATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCCGCAAGCTT
1 TATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCCGCAAGCTT
63995859 CGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTA
66 CGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTA
63995924 AAGACCCGCAGGCTTTGTACTGGAATTG
131 AAGACCCGCAGGCTTTGTACTGGAATTG
* * ** *
63995952 TAT-CTGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAAGC
1 TATCCT-GACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTGGACTT-AAGGTCCGCAAGC
* * * * *
63996016 TTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAATTGTATCCGGAC
64 TTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGC
63996080 TTAA
128 TTAA
63996084 GATCAGTAGG
Statistics
Matches: 270, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
157 150 0.56
158 49 0.18
159 71 0.26
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (158 bp):
TATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCCGCAAGCTT
CGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTA
AAGACCCGCAGGCTTTGTACTGGAATTG
Found at i:63995972 original size:119 final size:118
Alignment explanation
Indices: 63995653--63996104 Score: 566
Period size: 119 Copynumber: 3.8 Consensus size: 118
63995643 GACTTAAGGT
* * ** * *
63995653 CCGCAGGCTTCGTGCTGGAATTATATTCGGACTTAAGGTCCGCAAGCTTCATGCTGGAATTGTAT
1 CCGCAGGCTTTGTGCTGGAATTATATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTAT
* * * * *
63995718 CCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCTGGGCTTAAAGAC
66 CCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * **
63995772 CCGCAGGCTTTGTGCTGGAA-TGTATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTTGTGCTGGAATTATATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTAT
* * *
63995836 CTGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
66 CCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * *
63995889 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTACTGGAATTGTA
1 CCGCAGGCTTTGTGCTGGAATTATATCCGGACTT-AAGACCCGCAGGCTTCGTGCTGGAATTGTA
* *
63995954 TCTGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
65 TCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * *
63996008 CCACAAGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
1 CCGCAGGCTTTGTGCTGGAATTATATCCGGACTT-AAGACCCGCAGGCTTCGTGCTGGAATTGTA
* *
63996073 TCCGGACTTAAGATCAGTAGGCTTCGTGCTGG
65 TCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
63996105 TACTATATTT
Statistics
Matches: 294, Mismatches: 36, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
116 1 0.00
117 55 0.19
118 55 0.19
119 183 0.62
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (118 bp):
CCGCAGGCTTTGTGCTGGAATTATATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTAT
CCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:63996119 original size:39 final size:39
Alignment explanation
Indices: 63996052--63996154 Score: 125
Period size: 39 Copynumber: 2.6 Consensus size: 39
63996042 AAAGACCCGC
* * *
63996052 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCAGT
1 AGGCTTCGTGCTGGTACTATATCCGGACTTAAGATCAGT
** * *
63996091 AGGCTTCGTGCTGGTACTATATTTGGACTTAAGGTCTGT
1 AGGCTTCGTGCTGGTACTATATCCGGACTTAAGATCAGT
**
63996130 AGGCTTCGTATTGGTACTATATCCG
1 AGGCTTCGTGCTGGTACTATATCCG
63996155 AGCTTAAAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.35
Consensus pattern (39 bp):
AGGCTTCGTGCTGGTACTATATCCGGACTTAAGATCAGT
Found at i:63996161 original size:39 final size:39
Alignment explanation
Indices: 63996071--63996184 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 39
63996061 GCTGGAATTG
* * **
63996071 TATCCGGACTTAAGATCAGTAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCTGTAGGCTTCGTATTGGTACTA
**
63996110 TATTTGGACTTAAGGTCTGTAGGCTTCGTATTGGTACTA
1 TATCCGGACTTAAGGTCTGTAGGCTTCGTATTGGTACTA
* * *
63996149 TATCC-GAGCTTAAAGTCTCGTAGGCTTTGTTTTGGT
1 TATCCGGA-CTTAAGGTCT-GTAGGCTTCGTATTGGT
63996185 GATTGAATTC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.03
39 45 0.73
40 15 0.24
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCTGTAGGCTTCGTATTGGTACTA
Found at i:63999024 original size:2 final size:2
Alignment explanation
Indices: 63999011--63999054 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
63999001 TGAAAATCAA
* * *
63999011 AT AT AT AC AT AT AT AT AT AC AT AT AT AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63999053 AT
1 AT
63999055 GTGATGCTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:63999028 original size:12 final size:12
Alignment explanation
Indices: 63999011--63999054 Score: 70
Period size: 12 Copynumber: 3.5 Consensus size: 12
63999001 TGAAAATCAA
63999011 ATATATACATAT
1 ATATATACATAT
63999023 ATATATACATATAT
1 ATATATAC--ATAT
63999037 ATATATACATAT
1 ATATATACATAT
63999049 ATATAT
1 ATATAT
63999055 GTGATGCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 18 0.60
14 12 0.40
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATACATAT
Found at i:63999036 original size:14 final size:14
Alignment explanation
Indices: 63999011--63999054 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
63999001 TGAAAATCAA
63999011 ATATATAC--ATAT
1 ATATATACATATAT
63999023 ATATATACATATAT
1 ATATATACATATAT
63999037 ATATATACATATAT
1 ATATATACATATAT
63999051 ATAT
1 ATAT
63999055 GTGATGCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.27
14 22 0.73
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATATACATATAT
Found at i:64000682 original size:44 final size:43
Alignment explanation
Indices: 64000541--64000698 Score: 135
Period size: 44 Copynumber: 3.7 Consensus size: 43
64000531 AACATATACA
* * * *
64000541 ATGCCAACATCCCAGACGTGGTCTTACATGTAATAA-AACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAA-AACAAAATCG
* * * * * *
64000584 ATGCC-TCTGTCCTAGAAAGGGTCTTACACG-AAATC-AGATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAAACAAAAT-CG
* *
64000626 ATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAAACAAAA-TCG
*
64000670 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
64000699 AAAATCCTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
41 4 0.04
42 29 0.33
43 25 0.28
44 30 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAAACAAAATCG
Found at i:64005599 original size:22 final size:23
Alignment explanation
Indices: 64005561--64005636 Score: 102
Period size: 22 Copynumber: 3.3 Consensus size: 23
64005551 AAGTTGTATT
64005561 GAGCTGAAACAGTAAGCTCTAAC
1 GAGCTGAAACAGTAAGCTCTAAC
*
64005584 GAGCTG-AATAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTA-AC
*
64005606 GAGCTGAAAACAGTAAGCTCTTAC
1 GAGCTG-AAACAGTAAGCTCTAAC
64005630 GAGCTGA
1 GAGCTGA
64005637 TATATCGATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
21 1 0.02
22 19 0.41
23 7 0.15
24 19 0.41
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTAAC
Found at i:64005625 original size:24 final size:22
Alignment explanation
Indices: 64005561--64005636 Score: 100
Period size: 24 Copynumber: 3.3 Consensus size: 22
64005551 AAGTTGTATT
64005561 GAGCTGAAACAGTAAGCTCTAAC
1 GAGCTGAAACAGTAAGCTCT-AC
*
64005584 GAGCTG-AATAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTC-TAC
64005606 GAGCTGAAAACAGTAAGCTCTTAC
1 GAGCTG-AAACAGTAAGCTC-TAC
64005630 GAGCTGA
1 GAGCTGA
64005637 TATATCGATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
22 19 0.40
23 8 0.17
24 20 0.43
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (22 bp):
GAGCTGAAACAGTAAGCTCTAC
Found at i:64005632 original size:46 final size:48
Alignment explanation
Indices: 64005561--64005661 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 48
64005551 AAGTTGTATT
*
64005561 GAGCTGAAACAGTAAGCTCTAACGAGCTGA-ATA-G-TAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCTAACGAGCTGATATACGATAAACTCATAC
*
64005606 GAGCTGAAAACAGTAAGCTCTTACGAGCTGATATATCGATAAACTCATAC
1 GAGCTG-AAACAGTAAGCTCTAACGAGCTGATATA-CGATAAACTCATAC
64005656 GAGCTG
1 GAGCTG
64005662 TGGTGAGTCC
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
45 6 0.12
46 23 0.47
47 3 0.06
49 1 0.02
50 16 0.33
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (48 bp):
GAGCTGAAACAGTAAGCTCTAACGAGCTGATATACGATAAACTCATAC
Found at i:64017674 original size:29 final size:29
Alignment explanation
Indices: 64017641--64017755 Score: 160
Period size: 29 Copynumber: 3.9 Consensus size: 29
64017631 ATGTGTGTTT
*
64017641 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATACG
64017670 AATGTGATTTGGGCCTAATGGGCCATACG
1 AATGTGATTTGGGCCTAATGGGCCATACG
* *
64017699 AATATGATTTAGGCCTAATGGGCCATACG
1 AATGTGATTTGGGCCTAATGGGCCATACG
* *
64017728 AAAATGAGA-TTGGGCCTAGTGGGCCATA
1 --AATGTGATTTGGGCCTAATGGGCCATA
64017756 TGCATGCATG
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
29 55 0.71
30 17 0.22
31 5 0.06
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATACG
Found at i:64022746 original size:37 final size:37
Alignment explanation
Indices: 64022640--64022748 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
64022630 AGCTCAGACG
* *
64022640 AAATCTCCACACGTAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64022677 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
64022714 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
64022749 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64022955 original size:50 final size:50
Alignment explanation
Indices: 64022899--64022995 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
64022889 ATATCCTACG
64022899 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
64022949 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
64022996 TCATCACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:64023218 original size:47 final size:47
Alignment explanation
Indices: 64022953--64023239 Score: 407
Period size: 47 Copynumber: 6.1 Consensus size: 47
64022943 TATATATATT
* * ** * *
64022953 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACATTCA
* *
64022999 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64023046 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
64023093 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64023140 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * **
64023187 TCACATTGGCCATTCAGCCTTATCTCGTATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64023234 TCACAT
1 TCACAT
64023240 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
46 20 0.09
47 191 0.86
48 10 0.05
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:64026145 original size:42 final size:41
Alignment explanation
Indices: 64026027--64026349 Score: 291
Period size: 41 Copynumber: 7.9 Consensus size: 41
64026017 AGTTTACTTA
* * * * *
64026027 AAAACGCCGCAAAAAAATGAGAAATAGTGGCGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
* *
64026068 AAAATGCCTCTAAAAA-T-AGATCAATAGCGGCGTTTTTGTCT
1 AAAACGCCACTAAAAACTGAGA--AATAGCGGCGTTTTTGTCT
* *
64026109 AAAACGCCACTAAAAACTGGGGAAATAGCGGCGTTTTTGTCC
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTGTCT
* * * ** *
64026151 CAAATGCCACT-AAAACTAATCAATAGCGGCGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
**
64026191 AAAACG-CTGTGAAAAACTGGAGAAATAGCGGCGTTTTTGTC-
1 AAAACGCCACT-AAAAACT-GAGAAATAGCGGCGTTTTTGTCT
* ** * *
64026232 CAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCC
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
64026273 AAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTC-
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTGTCT
* * * ** *
64026314 CAAGCACCACT-AAAACTGATCAATAGCAGCGTTTTT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTT
64026350 AGGCCCAAAC
Statistics
Matches: 230, Mismatches: 41, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
39 21 0.09
40 47 0.20
41 93 0.40
42 67 0.29
44 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (41 bp):
AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
Found at i:64026362 original size:82 final size:81
Alignment explanation
Indices: 64026027--64026350 Score: 400
Period size: 82 Copynumber: 4.0 Consensus size: 81
64026017 AGTTTACTTA
* * * * * * * * *
64026027 AAAACGCCGCAAAAAAAT-GAGAAATAGTGGCGTTTTTATCTAAAATGCCTCTAAAAATAGATCA
1 AAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTC-CAAACGCCACTAAAACT-GATCA
* *
64026091 ATAGCGGCGTTTTTGTCT
64 ATAGCGGCGTTTTTATCC
* * *
64026109 AAAACGCCACTAAAAACTGGGGAAATAGCGGCGTTTTTGTCCCAAATGCCACTAAAACTAATCAA
1 AAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGT-CCAAACGCCACTAAAACTGATCAA
*
64026174 TAGCGGCGTTTTTATCT
65 TAGCGGCGTTTTTATCC
**
64026191 AAAACG-CTGTGAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAACGCCACTAAAAACTGATCA
1 AAAACGCCACT-AAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAACGCCACT-AAAACTGATCA
64026255 ATAGCGGCGTTTTTATCC
64 ATAGCGGCGTTTTTATCC
* * *
64026273 AAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCAAGCACCACTAAAACTGATCAAT
1 AAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAACGCCACTAAAACTGATCAAT
*
64026338 AGCAGCGTTTTTA
66 AGCGGCGTTTTTA
64026351 GGCCCAAACG
Statistics
Matches: 214, Mismatches: 23, Indels: 11
0.86 0.09 0.04
Matches are distributed among these distances:
81 38 0.18
82 141 0.66
83 34 0.16
84 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (81 bp):
AAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAACGCCACTAAAACTGATCAAT
AGCGGCGTTTTTATCC
Found at i:64026392 original size:164 final size:165
Alignment explanation
Indices: 64026027--64026411 Score: 408
Period size: 164 Copynumber: 2.4 Consensus size: 165
64026017 AGTTTACTTA
* *** * *
64026027 AAAACGCCGCAAAAAAAT-GAGAAATAGTGGCG-TTTTT-ATCTAAAATGCCTCTAAAAATAGAT
1 AAAACGCCGCAAAAAACTGGAGAAATAGCAACGTTTTTTGATC--AAACGCCACTAAAAATAGAT
* * * *
64026089 CAATAGCGGCGTTTTTGTCTAAAACGCCACTAAAAACTGGGGAAATAGCGGCGTTTTTGTCCCAA
64 CAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCCAA
** * * *
64026154 ATGCCACTAAAACTAATCAATAGCGGCGTTTTTATCT
129 ACACCACTAAAACTAATCAATAGCAGCGTTTTTAGCC
* ** **
64026191 AAAACGCTGTGAAAAACTGGAGAAATAGCGGCG-TTTTTG-TCCAAACGCCACTAAAAACT-GAT
1 AAAACGCCGCAAAAAACTGGAGAAATAGCAACGTTTTTTGAT-CAAACGCCACTAAAAA-TAGAT
64026253 CAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGT-CCAA
64 CAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCCAA
* *
64026317 GCACCACTAAAACTGATCAATAGCAGCGTTTTTAGGCC
129 ACACCACTAAAACTAATCAATAGCAGCGTTTTTA-GCC
* * ** ***
64026355 CAAACGCCGCAAAAAATTTTATCTATAGCAACGTTTTTTGATCAAACGCCA-TAAAAA
1 AAAACGCCGCAAAAAACTGGAGAAATAGCAACGTTTTTTGATCAAACGCCACTAAAAA
64026412 ATTGAGCTGC
Statistics
Matches: 184, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
163 33 0.18
164 114 0.62
165 35 0.19
166 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (165 bp):
AAAACGCCGCAAAAAACTGGAGAAATAGCAACGTTTTTTGATCAAACGCCACTAAAAATAGATCA
ATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCCAAAC
ACCACTAAAACTAATCAATAGCAGCGTTTTTAGCC
Found at i:64029510 original size:27 final size:27
Alignment explanation
Indices: 64029434--64029543 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
64029424 CATGGCTACT
* * *
64029434 AGAACAGATAA-TATGACAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
* *
64029460 AGATATAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAATTGTGGCAGAGCCACC
64029488 AGAACAGA-AATATGTGGCAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
64029515 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
64029542 AG
1 AG
64029544 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 48 0.68
28 17 0.24
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:64029524 original size:54 final size:54
Alignment explanation
Indices: 64029434--64029543 Score: 143
Period size: 54 Copynumber: 2.0 Consensus size: 54
64029424 CATGGCTACT
* *
64029434 AGAACAGATAATATGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCACC
1 AGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
* * *
64029488 AGAACAGA-AATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATA--TGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
64029542 AG
1 AG
64029544 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 4 0.08
54 30 0.61
55 15 0.31
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (54 bp):
AGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACC
Found at i:64030986 original size:24 final size:24
Alignment explanation
Indices: 64030959--64031029 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
64030949 CTAGATTTCC
*
64030959 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
64030983 TCCCTCATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
64031007 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
64031030 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.27, C:0.39, G:0.00, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:64035573 original size:37 final size:37
Alignment explanation
Indices: 64035523--64035674 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
64035513 TCCTTTAGCT
* * * *
64035523 CGGACGAAATCTCCTCACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
64035560 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
64035597 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
64035634 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
64035671 CGGA
1 CGGA
64035675 ATATATTTCC
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:64035889 original size:47 final size:47
Alignment explanation
Indices: 64035837--64036117 Score: 427
Period size: 47 Copynumber: 6.0 Consensus size: 47
64035827 TTTCACACTA
* * * * *
64035837 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
64035884 GCCATTCGGCCTTATCACACATATACATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
64035931 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
64035978 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
64036025 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
64036072 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
64036118 AAATCCTAAA
Statistics
Matches: 212, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 212 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:64036023 original size:25 final size:25
Alignment explanation
Indices: 64035944--64036023 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
64035934 ATTCGGCCTT
*
64035944 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
64035969 ATCACAT-T-GGCCA--TTCGGC-CTC
1 ATCACATATATG-CATGTTC-ACATTC
64035991 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
64036016 ATCACATA
1 ATCACATA
64036024 GGCCATTCGG
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 5 0.12
25 20 0.49
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:64040157 original size:40 final size:40
Alignment explanation
Indices: 64040125--64040472 Score: 518
Period size: 40 Copynumber: 8.7 Consensus size: 40
64040115 CCAGCATGAT
** *
64040125 TGCTCTTCGGGACCTAGCCCGGATATGA-CACCAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATAT-ATCACTAGCACGAA
* * *
64040165 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * * *
64040205 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * *
64040245 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
64040285 TGCTCTTCGGGATTTAGCCCGGATATATCACCAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
64040325 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
64040365 TGCTCTTCGGGATTTAGCCCGGATATATCACCAGCTCGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
64040405 TGCTCTTCGGGATTTAGCCCGGATTTATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
64040445 TGCTCTTCGGGATTTAGCCCGGACATAT
1 TGCTCTTCGGGATTTAGCCCGGATATAT
64040473 TACTCTCAAT
Statistics
Matches: 285, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 284 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
Found at i:64041789 original size:37 final size:37
Alignment explanation
Indices: 64041739--64041890 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
64041729 AACTTTAGCT
* * *
64041739 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
64041776 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
64041813 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * * *
64041850 CGGACATACTCTCAACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
64041887 CGGA
1 CGGA
64041891 ATATATTTCC
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:64042105 original size:47 final size:47
Alignment explanation
Indices: 64042053--64042279 Score: 355
Period size: 47 Copynumber: 4.8 Consensus size: 47
64042043 TTTCACACTA
* * *
64042053 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTG
* * *
64042100 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTG
* *
64042147 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTG
*
64042194 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTG
* *
64042241 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64042280 TCATATTAAA
Statistics
Matches: 165, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 165 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTG
Found at i:64042317 original size:141 final size:137
Alignment explanation
Indices: 64042045--64042306 Score: 377
Period size: 141 Copynumber: 1.9 Consensus size: 137
64042035 CCCACATATT
*
64042045 TCACACTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACACTAGCCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
* * * *
64042110 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATT-G-AAAT--GCCTAATCAAATATATGCAT
64042175 GTTCACATTCA
127 GTTCACATTCA
*
64042186 TCACA-TAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGG
1 TCACACTA-GCCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGG
*
64042250 CCTTATCACACATATGCATGCTCACATTCATCATATT-AAAT-CCTAAATCAAAATATA
65 CCTTATCACACATATGCATGCTCACATTCATCACATTGAAATGCCT-AATC-AAATATA
64042307 AATTTTCATG
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
135 3 0.03
136 3 0.03
137 6 0.05
138 2 0.02
140 2 0.02
141 95 0.86
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (137 bp):
TCACACTAGCCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGAAATGCCTAATCAAATATATGCATGTTC
ACATTCA
Found at i:64047545 original size:27 final size:27
Alignment explanation
Indices: 64047467--64047578 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
64047457 AGCATGGCTG
* *
64047467 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
64047493 CCAAATATAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
64047521 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
64047548 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
64047575 CCAG
1 CCAG
64047579 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:64047559 original size:54 final size:54
Alignment explanation
Indices: 64047467--64047578 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
64047457 AGCATGGCTG
* * *
64047467 CCAGAACAGATAATGTGACAGAGTCACCAAATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
* * * *
64047521 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
64047575 CCAG
1 CCAG
64047579 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
Found at i:64049021 original size:24 final size:24
Alignment explanation
Indices: 64049005--64049064 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
64048995 CCCTTATTTG
*
64049005 CTCCTAAATCCTATCCCTCATCAA
1 CTCCTAAATCCTATCCCTTATCAA
64049029 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
64049053 CTCCTAAATCCT
1 CTCCTAAATCCT
64049065 CTCCTGACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.32
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:64050407 original size:357 final size:357
Alignment explanation
Indices: 64049752--64050465 Score: 1320
Period size: 357 Copynumber: 2.0 Consensus size: 357
64049742 TTTTCAACCT
*
64049752 TTGTACTTCCTTTAGACTCTTAGTAGTAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
1 TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
* *
64049817 AGCAATTGATGTTGTGTCATTCAGATGCTGTGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
66 AGCAATTGATGCTGTATCATTCAGATGCTGTGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
* * *
64049882 GCATTAGCAATTGATGCAGCTGGTTCGGTTTTATATTCTGTTACAGAATTCTAGGTAAAGCCATA
131 GCATTAGCAAGTGATGCAGCTGGTTCGATTTTATATTCTGTTACAGAATTCTAGGTAAAGCCACA
* *
64049947 CAGATGTAGGAAGTTTCTGAACTATGTAACTAAAATTTTAGTGTTCATCTTAGTTTTATAACTAG
196 CAGATGTAGGAAGTTTCTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTAG
64050012 TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
261 TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
64050077 GTCAATGAATCAGATAATAACACATCTTTTAA
326 GTCAATGAATCAGATAATAACACATCTTTTAA
*
64050109 TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGTAATTGATTACATTGAAGTATT
1 TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
64050174 AGCAATTGATGCTGTATCATTCAGATGCTGTGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
66 AGCAATTGATGCTGTATCATTCAGATGCTGTGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
*
64050239 GCATTAGCTAGTGATGCAGCTGGTTCGATTTTATATTCTGTTACAGAATTCTAGGTAAAGCCACA
131 GCATTAGCAAGTGATGCAGCTGGTTCGATTTTATATTCTGTTACAGAATTCTAGGTAAAGCCACA
*
64050304 CAGATGTAGGAAGTTTTTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTAG
196 CAGATGTAGGAAGTTTCTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTAG
64050369 TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
261 TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
*
64050434 GTCAATGAATTAGATAATAACACATCTTTTAA
326 GTCAATGAATCAGATAATAACACATCTTTTAA
64050466 AATAAAATAA
Statistics
Matches: 345, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
357 345 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (357 bp):
TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
AGCAATTGATGCTGTATCATTCAGATGCTGTGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
GCATTAGCAAGTGATGCAGCTGGTTCGATTTTATATTCTGTTACAGAATTCTAGGTAAAGCCACA
CAGATGTAGGAAGTTTCTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTAG
TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
GTCAATGAATCAGATAATAACACATCTTTTAA
Found at i:64050555 original size:17 final size:17
Alignment explanation
Indices: 64050533--64050573 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
64050523 ATTTAGATGA
*
64050533 TAGGTATGGTTGATTGT
1 TAGGTATGATTGATTGT
64050550 TAGGTATGATTGATTGT
1 TAGGTATGATTGATTGT
64050567 TATGGTA
1 TA-GGTA
64050574 GCAAAATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (17 bp):
TAGGTATGATTGATTGT
Found at i:64051098 original size:16 final size:16
Alignment explanation
Indices: 64051077--64051108 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64051067 TCTGCAAGAA
64051077 AAAATATTACCAATTG
1 AAAATATTACCAATTG
64051093 AAAATATTACCAATTG
1 AAAATATTACCAATTG
64051109 TTCTTCCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (16 bp):
AAAATATTACCAATTG
Found at i:64051597 original size:25 final size:25
Alignment explanation
Indices: 64051569--64051618 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
64051559 TCCGCATCGT
*
64051569 CATCGGTAGCCCTC-TGCTACATCTC
1 CATCGGCAGCCCTCAT-CTACATCTC
*
64051594 CATCGGCATCCCTCATCTACATCTC
1 CATCGGCAGCCCTCATCTACATCTC
64051619 TGTTGGCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.18, C:0.42, G:0.12, T:0.28
Consensus pattern (25 bp):
CATCGGCAGCCCTCATCTACATCTC
Found at i:64052901 original size:9 final size:9
Alignment explanation
Indices: 64052887--64053146 Score: 164
Period size: 9 Copynumber: 29.1 Consensus size: 9
64052877 TATTATTTAA
64052887 TACATAACT
1 TACATAACT
64052896 TACATAACT
1 TACATAACT
*
64052905 TATATAA--
1 TACATAACT
64052912 TACATAACT
1 TACATAACT
*
64052921 TACATAATT
1 TACATAACT
64052930 TACATAACT
1 TACATAACT
64052939 TACATAACT
1 TACATAACT
64052948 TACATAA--
1 TACATAACT
* *
64052955 TACATGAGT
1 TACATAACT
*
64052964 TACATAATT
1 TACATAACT
* *
64052973 TAAAGATCAAAT
1 T--ACAT-AACT
*
64052985 T-TATAACT
1 TACATAACT
*
64052993 TACATAATT
1 TACATAACT
64053002 TACATAACT
1 TACATAACT
64053011 TACATAA--
1 TACATAACT
* *
64053018 TACATGAGT
1 TACATAACT
*
64053027 TACATAATT
1 TACATAACT
* *
64053036 TAAAGATCAAAT
1 T--ACAT-AACT
* *
64053048 TTCAAAACT
1 TACATAACT
64053057 TACATAA--
1 TACATAACT
64053064 TACATAACT
1 TACATAACT
*
64053073 TACATAATT
1 TACATAACT
* *
64053082 TAAAAATCAAAT
1 T--ACAT-AACT
*
64053094 TTCATAACT
1 TACATAACT
*
64053103 TACATAATT
1 TACATAACT
64053112 TACATAACT
1 TACATAACT
64053121 TACATAA--
1 TACATAACT
*
64053128 TACATGACT
1 TACATAACT
64053137 TACATAACT
1 TACATAACT
64053146 T
1 T
64053147 TATTATACTT
Statistics
Matches: 195, Mismatches: 36, Indels: 40
0.72 0.13 0.15
Matches are distributed among these distances:
7 31 0.16
8 4 0.02
9 136 0.70
10 3 0.02
11 9 0.05
12 12 0.06
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:64052907 original size:25 final size:25
Alignment explanation
Indices: 64052879--64053127 Score: 126
Period size: 25 Copynumber: 10.0 Consensus size: 25
64052869 TTTTTAAATA
*
64052879 TTATTTAATACATAACTTACATAAC
1 TTATATAATACATAACTTACATAAC
*
64052904 TTATATAATACATAACTTACATAAT
1 TTATATAATACATAACTTACATAAC
*
64052929 TTACATAACTTACATAACTTACATAA-
1 TTATATAA--TACATAACTTACATAAC
* * * * *
64052955 -TACATGAGTTACATAATTTAAAGATCAAA
1 TTATAT-A-ATACATAACTT--ACAT-AAC
*
64052984 TT-TATAACTTACATAATTTACATAAC
1 TTATATAA--TACATAACTTACATAAC
* * *
64053010 TTACATAATACATGAGTTACATAA-
1 TTATATAATACATAACTTACATAAC
* * *
64053034 TT-TA-AAGATCA-AA-TTTCAAAAC
1 TTATATAATA-CATAACTTACATAAC
* *
64053056 TTACATAATACATAACTTACATAAT
1 TTATATAATACATAACTTACATAAC
* *
64053081 TTA-AAAAT-CA-AA-TTTCATAAC
1 TTATATAATACATAACTTACATAAC
*
64053102 TTACATAATTTACATAACTTACATAA
1 TTATATAA--TACATAACTTACATAA
64053128 TACATGACTT
Statistics
Matches: 172, Mismatches: 28, Indels: 46
0.70 0.11 0.19
Matches are distributed among these distances:
21 16 0.09
22 11 0.06
23 8 0.05
24 12 0.07
25 69 0.40
26 7 0.04
27 33 0.19
28 3 0.02
29 12 0.07
30 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.36
Consensus pattern (25 bp):
TTATATAATACATAACTTACATAAC
Found at i:64053002 original size:72 final size:71
Alignment explanation
Indices: 64052914--64053146 Score: 253
Period size: 63 Copynumber: 3.5 Consensus size: 71
64052904 TTATATAATA
64052914 CATAACTTACATAATTTACATAACTTACATAACTTACATAATACATGAGTTACATAATTTAAAGA
1 CATAACTTACATAA--TACATAACTTACATAACTTACATAATACATGAGTTACATAATTTAAAGA
64052979 TCAAATTT
64 TCAAATTT
64052987 -ATAACTTAC---ATA-AT---TTACATAACTTACATAATACATGAGTTACATAATTTAAAGATC
1 CATAACTTACATAATACATAACTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATC
64053044 AAATTT
66 AAATTT
* * * * * * *
64053050 CAAAACTTACATAATACATAACTTACATAATTTA-AAAAT-CA--AATTTCATAACTT--ACAT-
1 CATAACTTACATAATACATAACTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATC
* *
64053108 AATTTA
66 AAATTT
*
64053114 CATAACTTACATAATACATGACTTACATAACTT
1 CATAACTTACATAATACATAACTTACATAACTT
64053147 TATTATACTT
Statistics
Matches: 140, Mismatches: 12, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
63 49 0.35
64 42 0.30
65 3 0.02
66 2 0.01
67 15 0.11
68 2 0.01
69 3 0.02
70 4 0.03
71 11 0.08
72 9 0.06
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.35
Consensus pattern (71 bp):
CATAACTTACATAATACATAACTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATC
AAATTT
Found at i:64053003 original size:16 final size:16
Alignment explanation
Indices: 64052890--64053149 Score: 119
Period size: 16 Copynumber: 16.1 Consensus size: 16
64052880 TATTTAATAC
64052890 ATAACTTACATAACTTAT
1 ATAACTTACATAA-TT-T
*
64052908 ATAA--TACATAACTTAC
1 ATAACTTACATAA-TT-T
* *
64052924 ATAATTTACATAACTTAC
1 ATAACTTACATAA-TT-T
**
64052942 ATAACTTACATAATAC
1 ATAACTTACATAATTT
* *
64052958 ATGAGTTACATAATTT
1 ATAACTTACATAATTT
**
64052974 A-AAGAT-CA-AATTT
1 ATAACTTACATAATTT
64052987 ATAACTTACATAATTT
1 ATAACTTACATAATTT
**
64053003 ACATAACTTACATAATAC
1 --ATAACTTACATAATTT
* *
64053021 ATGAGTTACATAATTT
1 ATAACTTACATAATTT
**
64053037 A-AAGAT-CA-AATTT
1 ATAACTTACATAATTT
* **
64053050 CAAAACTTACATAATAC
1 -ATAACTTACATAATTT
64053067 ATAACTTACATAATTT
1 ATAACTTACATAATTT
**
64053083 A-AAAAT-CA-AATTT
1 ATAACTTACATAATTT
64053096 CATAACTTACATAATTT
1 -ATAACTTACATAATTT
**
64053113 ACATAACTTACATAATAC
1 --ATAACTTACATAATTT
*
64053131 ATGACTTACATAACTTT
1 ATAACTTACATAA-TTT
64053148 AT
1 AT
64053150 TATACTTATA
Statistics
Matches: 190, Mismatches: 35, Indels: 35
0.73 0.13 0.13
Matches are distributed among these distances:
13 16 0.08
14 11 0.06
15 17 0.09
16 77 0.41
17 12 0.06
18 57 0.30
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAACTTACATAATTT
Found at i:64053008 original size:63 final size:63
Alignment explanation
Indices: 64052923--64053080 Score: 266
Period size: 63 Copynumber: 2.5 Consensus size: 63
64052913 ACATAACTTA
*
64052923 CATAATTTACATAACTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAA-TTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
64052987 -ATAACTTACATAATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAA-TTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
*
64053050 CAAAACTTACATAA-TACATAACTTACATAAT
1 CATAACTTACATAATTACATAACTTACATAAT
64053081 TTAAAAATCA
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
62 17 0.19
63 61 0.68
64 12 0.13
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.35
Consensus pattern (63 bp):
CATAACTTACATAATTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
Found at i:64053065 original size:46 final size:46
Alignment explanation
Indices: 64052998--64053128 Score: 199
Period size: 46 Copynumber: 2.8 Consensus size: 46
64052988 TAACTTACAT
* * *
64052998 AATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAAATCA
*
64053045 AATTTCAAAACTTACATAATACATAACTTACATAATTTAAAAATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAAATCA
64053091 AATTTCATAACTTACATAATTTACATAACTTACATAAT
1 AATTTCATAACTTACATAA--TACATAACTTACATAAT
64053129 ACATGACTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
46 55 0.71
47 5 0.06
48 17 0.22
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (46 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAAATCA
Found at i:64058225 original size:13 final size:14
Alignment explanation
Indices: 64058209--64058237 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
64058199 TTATAAATAT
64058209 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
64058222 TTATAATGGTTTAA
1 TTATAATGGTTTAA
64058236 TT
1 TT
64058238 TGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:64058988 original size:22 final size:20
Alignment explanation
Indices: 64058963--64059002 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
64058953 ATGCTAAATT
*
64058963 TGCTATTTTTGGTTGCATTTCA
1 TGCTATATTT-GTTG-ATTTCA
64058985 TGCTATATTTGTTGATTT
1 TGCTATATTTGTTGATTT
64059003 TGGTTGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.15, C:0.10, G:0.17, T:0.57
Consensus pattern (20 bp):
TGCTATATTTGTTGATTTCA
Found at i:64058995 original size:31 final size:33
Alignment explanation
Indices: 64058935--64059008 Score: 82
Period size: 31 Copynumber: 2.3 Consensus size: 33
64058925 AGAATTAATG
* *
64058935 TTTTTGGTTGTATTTTTTATGCTAAATTTGCT-A
1 TTTTTGGTTGCA-TTTTCATGCTAAATTTGCTGA
* *
64058968 TTTTTGGTTGCA-TTTCATGCTATATTTGTTGA
1 TTTTTGGTTGCATTTTCATGCTAAATTTGCTGA
64059000 -TTTTGGTTG
1 TTTTTGGTTG
64059009 GATTCAATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 24 0.67
32 1 0.03
33 11 0.31
ACGTcount: A:0.15, C:0.07, G:0.19, T:0.59
Consensus pattern (33 bp):
TTTTTGGTTGCATTTTCATGCTAAATTTGCTGA
Found at i:64063637 original size:37 final size:37
Alignment explanation
Indices: 64063578--64063723 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
64063568 AGCTCAGACG
* *
64063578 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64063615 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64063652 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64063689 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
64063724 ATATATTTCC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64063995 original size:48 final size:48
Alignment explanation
Indices: 64063869--64064053 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
64063859 GCACATCGCC
*
64063869 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
64063919 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
64063967 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
64064015 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
64064054 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:64064058 original size:98 final size:98
Alignment explanation
Indices: 64063869--64064052 Score: 293
Period size: 98 Copynumber: 1.9 Consensus size: 98
64063859 GCACATCGCC
* *
64063869 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACATACATATTTCACATT
64063934 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
64063967 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT-T-TCCCATACATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACATACATATTTCACATT
*
64064030 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
64064053 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 37 0.46
97 1 0.01
98 41 0.51
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACATACATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:64064103 original size:34 final size:34
Alignment explanation
Indices: 64064054--64064121 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
64064044 ACCACATATA
* *
64064054 TGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TGCATGCTCACATTCACCACATTGGCCATTCGGC
*
64064088 TGCATGCTCACATTCATCACATTGGCCATTCGGC
1 TGCATGCTCACATTCACCACATTGGCCATTCGGC
64064122 CTTATCACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.31
Consensus pattern (34 bp):
TGCATGCTCACATTCACCACATTGGCCATTCGGC
Found at i:64064131 original size:22 final size:22
Alignment explanation
Indices: 64064103--64064174 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
64064093 GCTCACATTC
64064103 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
64064125 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64064149 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64064172 ATC
1 ATC
64064175 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64064146 original size:47 final size:47
Alignment explanation
Indices: 64064088--64064203 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
64064078 GCCATTCGGC
*
64064088 TGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
*
64064135 TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATA
1 TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
**
64064182 TGCACATTCACATTCATCACAT
1 TGCATGTTCACATTCATCACAT
64064204 AAAATCCTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
Found at i:64064204 original size:25 final size:25
Alignment explanation
Indices: 64064125--64064204 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
64064115 ATTCGGCCTT
**
64064125 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
64064150 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
64064172 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
64064197 ATCACATA
1 ATCACATA
64064205 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 6 0.15
25 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:64070917 original size:40 final size:40
Alignment explanation
Indices: 64070869--64071053 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
64070859 GCTACTCGTT
*
64070869 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
64070909 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
64070949 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
64070988 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
64071029 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64071054 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 75 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64079894 original size:19 final size:19
Alignment explanation
Indices: 64079870--64079908 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
64079860 AGGGTAAGTG
64079870 CAAATTATCATTTTTAGCT
1 CAAATTATCATTTTTAGCT
64079889 CAAATTATCATTTTTAGCT
1 CAAATTATCATTTTTAGCT
64079908 C
1 C
64079909 GGGTATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.46
Consensus pattern (19 bp):
CAAATTATCATTTTTAGCT
Found at i:64082045 original size:18 final size:17
Alignment explanation
Indices: 64081998--64082047 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
64081988 AAAGACCAAG
*
64081998 AAAATTTTG-GGGTTTT
1 AAAAGTTTGAGGGTTTT
* *
64082014 AAGAGTTTTA-GGTTTT
1 AAAAGTTTGAGGGTTTT
64082030 AAAAGATTTGAGGGTTTT
1 AAAAG-TTTGAGGGTTTT
64082048 GGAGAATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 16 0.62
17 4 0.15
18 6 0.23
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (17 bp):
AAAAGTTTGAGGGTTTT
Found at i:64085290 original size:22 final size:21
Alignment explanation
Indices: 64085260--64085304 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
64085250 ATCTTCAGGG
*
64085260 TATCTTCAAGGATGTGTCGCGA
1 TATCATCAA-GATGTGTCGCGA
*
64085282 TATCATCAAGCTGTGTCGCGA
1 TATCATCAAGATGTGTCGCGA
64085303 TA
1 TA
64085305 CTGCAGGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (21 bp):
TATCATCAAGATGTGTCGCGA
Found at i:64091636 original size:37 final size:37
Alignment explanation
Indices: 64091577--64091683 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
64091567 AGCTCAGATG
* * * *
64091577 AAATCTCCACACGAAGTTATCGGGTCTTACCGGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
64091614 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
*
64091651 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
64091684 GAATATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
Found at i:64091884 original size:48 final size:48
Alignment explanation
Indices: 64091826--64092363 Score: 862
Period size: 48 Copynumber: 11.0 Consensus size: 48
64091816 ATATACACAC
* *
64091826 ATCTCCTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
64091874 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64091922 AT-TCCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCT-C--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
64091972 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64092020 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64092068 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64092118 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64092166 ATCTCATATATATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64092216 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
64092266 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
64092314 ATCTCATATATATTTCACATTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
64092362 AT
1 AT
64092364 ATTTATCTTG
Statistics
Matches: 463, Mismatches: 19, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 1 0.00
48 278 0.60
50 183 0.40
51 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:64091985 original size:98 final size:96
Alignment explanation
Indices: 64091826--64092363 Score: 862
Period size: 98 Copynumber: 5.5 Consensus size: 96
64091816 ATATACACAC
* * *
64091826 ATCTCCTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
64091891 CACTAGCCATTCGACTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
64091922 AT-TCCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 ATCT-C--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
64091986 TCACATTAGCCATTCGGCTTTACCACATATACAT
63 TCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64092020 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
64092085 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64092118 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
* *
64092183 CACACTAGCCATTCAGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
64092216 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
64092281 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
*
64092314 ATCTCATATATATTTCACATTAGCCATTCGGATTTACCACATATACATAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
64092364 ATTTATCTTG
Statistics
Matches: 418, Mismatches: 16, Indels: 16
0.93 0.04 0.04
Matches are distributed among these distances:
95 1 0.00
96 93 0.22
98 277 0.66
99 1 0.00
100 46 0.11
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:64092009 original size:146 final size:146
Alignment explanation
Indices: 64091826--64092363 Score: 947
Period size: 146 Copynumber: 3.7 Consensus size: 146
64091816 ATATACACAC
* *
64091826 ATCTCCTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
64091891 CACTAGCCATTCGACTTTACCACATATACATAT-TCCATATATATATTTCACATTAGCCATTCGG
66 CACTAGCCATTCGACTTTACCACATATACATATCT-CATATATATATTTCACATTAGCCATTCGG
64091955 CTTTACCACATATACAT
130 CTTTACCACATATACAT
64091972 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64092037 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
66 CACTAGCCATTCGACTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
64092102 TTTACCACATATACAT
131 TTTACCACATATACAT
* *
64092118 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
64092183 CACACTAGCCATTC-AGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTC
64 CACACTAGCCATTCGA-CTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTC
64092247 GGCTTTACCACATATACAT
128 GGCTTTACCACATATACAT
*
64092266 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64092331 CATTAGCCATTCGGA-TTTACCACATATACATAT
66 CACTAGCCATTC-GACTTTACCACATATACATAT
64092364 ATTTATCTTG
Statistics
Matches: 378, Mismatches: 8, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
146 234 0.62
147 1 0.00
148 143 0.38
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (146 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGACTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
TTTACCACATATACAT
Found at i:64105687 original size:20 final size:19
Alignment explanation
Indices: 64105649--64105687 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
64105639 TGGTACACAG
* *
64105649 TTTGGCCACACGACTATGT
1 TTTGGCCACACAACCATGT
64105668 TTTGAGCCACACAACCATGT
1 TTTG-GCCACACAACCATGT
64105688 GGCCCCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (19 bp):
TTTGGCCACACAACCATGT
Found at i:64113302 original size:21 final size:20
Alignment explanation
Indices: 64113266--64113305 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
64113256 ATACATGAGT
*
64113266 ATTTTGATGTTTAATGATAG
1 ATTTTGATGCTTAATGATAG
64113286 ATTTTGAATGCTTAATGATA
1 ATTTTG-ATGCTTAATGATA
64113306 ATTATACAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (20 bp):
ATTTTGATGCTTAATGATAG
Found at i:64129502 original size:72 final size:72
Alignment explanation
Indices: 64129421--64129566 Score: 283
Period size: 72 Copynumber: 2.0 Consensus size: 72
64129411 AAAAAGACTG
64129421 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
1 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
64129486 TTTACAT
66 TTTACAT
*
64129493 GTTCTGGTGAATTAGCTTTGAACTAAAACCATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
1 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
64129558 TTTACAT
66 TTTACAT
64129565 GT
1 GT
64129567 GTAGTGCTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (72 bp):
GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
TTTACAT
Found at i:64139094 original size:27 final size:27
Alignment explanation
Indices: 64139056--64139112 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
64139046 TGATGATGAC
64139056 AATCATTAGTTTTATATTTATAATTAT
1 AATCATTAGTTTTATATTTATAATTAT
64139083 AATCATTAGTTTTATATTTATAATTAT
1 AATCATTAGTTTTATATTTATAATTAT
64139110 AAT
1 AAT
64139113 TAATAAGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (27 bp):
AATCATTAGTTTTATATTTATAATTAT
Found at i:64139126 original size:21 final size:21
Alignment explanation
Indices: 64139102--64139147 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
64139092 TTTTATATTT
*
64139102 ATAATTATAATTAA-TAAGTAA
1 ATAATTAT-ATTAATTAAGCAA
*
64139123 ATAATTATCTTAATTAAGCAA
1 ATAATTATATTAATTAAGCAA
64139144 ATAA
1 ATAA
64139148 AACATGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (21 bp):
ATAATTATATTAATTAAGCAA
Found at i:64141890 original size:26 final size:25
Alignment explanation
Indices: 64141861--64141921 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
64141851 TCCTCTCTCA
64141861 AGCCATATAACAGGAAGCTCACAAAG
1 AGCCAT-TAACAGGAAGCTCACAAAG
**
64141887 AGCCATTAATGGGAAGCTCACAAAG
1 AGCCATTAACAGGAAGCTCACAAAG
64141912 AGCCTATTAA
1 AGCC-ATTAA
64141922 GAAGCTTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 21 0.66
26 11 0.34
ACGTcount: A:0.43, C:0.21, G:0.20, T:0.16
Consensus pattern (25 bp):
AGCCATTAACAGGAAGCTCACAAAG
Found at i:64141903 original size:25 final size:26
Alignment explanation
Indices: 64141873--64141921 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
64141863 CCATATAACA
64141873 GGAAGCTCACAAAGAGCC-ATTAATG
1 GGAAGCTCACAAAGAGCCTATTAATG
64141898 GGAAGCTCACAAAGAGCCTATTAA
1 GGAAGCTCACAAAGAGCCTATTAA
64141922 GAAGCTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.16
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATTAATG
Found at i:64141995 original size:26 final size:26
Alignment explanation
Indices: 64141964--64142028 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
64141954 ATAAGAGCCA
* *
64141964 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACCTT
** * *
64141990 TAATCAAAAAGCTCACTAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
64142016 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
64142029 TGGGTAGCTA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACCTT
Found at i:64142781 original size:19 final size:20
Alignment explanation
Indices: 64142759--64142805 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
64142749 AGCTTCGTCC
64142759 AGCTCAACTCAGCTCA-TTG
1 AGCTCAACTCAGCTCATTTG
*** *
64142778 AGCTCGTTTTAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
64142798 AGCTCAAC
1 AGCTCAAC
64142806 CGAGCTTACT
Statistics
Matches: 20, Mismatches: 7, Indels: 1
0.71 0.25 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:64147837 original size:27 final size:25
Alignment explanation
Indices: 64147807--64147869 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
64147797 TTTATAGAAA
* *
64147807 TTTTTATTTTTGTTTTAGAAT-TTTT
1 TTTTTATTTTTATTTTAG-ATGATTT
*
64147832 CTTTTTCCTTTTTATTTTAGATGATTT
1 -TTTTT-ATTTTTATTTTAGATGATTT
64147859 TTTTTATTTTT
1 TTTTTATTTTT
64147870 TTAAATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 5 0.16
26 12 0.39
27 14 0.45
ACGTcount: A:0.14, C:0.05, G:0.06, T:0.75
Consensus pattern (25 bp):
TTTTTATTTTTATTTTAGATGATTT
Found at i:64153238 original size:10 final size:10
Alignment explanation
Indices: 64153231--64153257 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
64153221 TATTGACATT
64153231 TTTTGACAAG
1 TTTTGACAAG
64153241 TTTTGACAAG
1 TTTTGACAAG
64153251 TTTTGAC
1 TTTTGAC
64153258 TATTTTCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (10 bp):
TTTTGACAAG
Found at i:64163211 original size:46 final size:46
Alignment explanation
Indices: 64163068--64163211 Score: 113
Period size: 46 Copynumber: 3.1 Consensus size: 46
64163058 CCCGCCCATA
*
64163068 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CT
* * * *
64163117 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGT-ATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-TCAACCATCCT
*
64163161 AGTGAACTCGGACTCAGCTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
64163207 AGTGA
1 AGTGA
64163212 TATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
43 1 0.01
44 8 0.11
46 32 0.43
47 30 0.40
49 4 0.05
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:64166988 original size:18 final size:18
Alignment explanation
Indices: 64166965--64167000 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64166955 CACATATGTA
64166965 TCATAAACTTTTATTCAT
1 TCATAAACTTTTATTCAT
64166983 TCATAAACTTTTATTCAT
1 TCATAAACTTTTATTCAT
64167001 ACTTTTCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
TCATAAACTTTTATTCAT
Done.