Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 194 of 373
Found at i:65235068 original size:37 final size:37
Alignment explanation
Indices: 65235018--65235096 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
65235008 TTATTACGAA
* *
65235018 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
65235055 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
65235092 GTCTT
1 GTCTT
65235097 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:65235293 original size:47 final size:47
Alignment explanation
Indices: 65235215--65235690 Score: 781
Period size: 47 Copynumber: 10.1 Consensus size: 47
65235205 CCCTTCGGGA
* * * * * * * *
65235215 CTTATCACATTTATGCACTTTCATATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
65235262 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65235309 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65235356 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65235403 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65235450 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65235497 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65235544 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65235593 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65235640 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65235687 CTTA
1 CTTA
65235691 CTATCATTTC
Statistics
Matches: 405, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 359 0.89
49 46 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65239159 original size:40 final size:40
Alignment explanation
Indices: 65239102--65239283 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
65239092 CCAGCATGAT
* * *
65239102 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
65239142 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * * *
65239182 TGCTCTTCGG-ACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGAACTTAGCCCGGATATA-TCACTAGCACGAA
* * *
65239222 TGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACGAA
* *
65239262 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
65239284 CATCATTCGA
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 20 0.17
40 92 0.79
41 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:65239237 original size:79 final size:80
Alignment explanation
Indices: 65239089--65239245 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 80
65239079 CGAATACACG
* * * *
65239089 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
65239154 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* * * *
65239169 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGA
* *
65239232 TCTTAGTCCGGATA
65 ACTTAGCCCGGATA
65239246 TGGTCACTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
79 34 0.52
80 32 0.48
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGCCCGGATACA
Found at i:65239630 original size:29 final size:29
Alignment explanation
Indices: 65239591--65239669 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
65239581 CTTAATAATC
*
65239591 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
65239621 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
65239650 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
65239670 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:65239712 original size:43 final size:43
Alignment explanation
Indices: 65239651--65239796 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
65239641 TGCATTTCAA
65239651 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65239694 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
65239737 TCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65239780 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
65239797 TGAAAACCAA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:65241696 original size:37 final size:37
Alignment explanation
Indices: 65241635--65241713 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
65241625 TTATTACGAA
* * *
65241635 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGAAAAAATCTCCACACGAAGTCATCGG
*
65241672 GTCTTACCCGGAAAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGAAAAAATCT-CCACACGAAGTCATCGG
65241709 GTCTT
1 GTCTT
65241714 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGAAAAAATCTCCACACGAAGTCATCGG
Found at i:65241910 original size:47 final size:47
Alignment explanation
Indices: 65241832--65242401 Score: 951
Period size: 47 Copynumber: 12.1 Consensus size: 47
65241822 CCCTTCGGGA
* * * * * * *
65241832 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
65241879 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65241926 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65241973 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65242020 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65242067 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65242114 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65242161 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65242208 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65242255 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65242304 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65242351 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65242398 CTTA
1 CTTA
65242402 CTATCATTTC
Statistics
Matches: 499, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 453 0.91
49 46 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65249130 original size:79 final size:78
Alignment explanation
Indices: 65249028--65249250 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
65249018 GCTCCTCATT
* *
65249028 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
65249093 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
65249108 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
65249171 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
65249186 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
65249249 GA
63 GA
65249251 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:65249145 original size:39 final size:40
Alignment explanation
Indices: 65249028--65249250 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
65249018 GCTCCTCATT
* *
65249028 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
65249068 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
65249108 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
65249147 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
65249186 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
65249227 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65249251 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:65257145 original size:38 final size:39
Alignment explanation
Indices: 65257001--65257261 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
65256991 GCTCCTCGTT
* * *
65257001 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
65257041 CAAATGCTTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
65257081 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
65257120 CAAATGCCTT-GGGCTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
65257158 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
65257197 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
65257238 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
65257262 CATCATTCAA
Statistics
Matches: 196, Mismatches: 16, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
38 37 0.19
39 92 0.47
40 56 0.29
41 11 0.06
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:65257170 original size:77 final size:79
Alignment explanation
Indices: 65257001--65257261 Score: 295
Period size: 77 Copynumber: 3.3 Consensus size: 79
65256991 GCTCCTCGTT
* * * *
65257001 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCTTTCGGGACTTAACCC
1 CAAATGCCTTCG-GGCTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
*
65257064 GGATTTAGTAACTCGCA
63 GGAATTAGTAACTCGCA
* *
65257081 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTT-GGG-CTTAGCCTGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
65257144 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
**
65257158 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
65257222 ATATT-GTCACTTAGCA
65 A-ATTAGTAAC-TCGCA
65257238 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
65257262 CATCATTCAA
Statistics
Matches: 160, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
77 72 0.45
78 14 0.09
79 53 0.33
80 21 0.13
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:65260403 original size:39 final size:39
Alignment explanation
Indices: 65260260--65260402 Score: 232
Period size: 39 Copynumber: 3.7 Consensus size: 39
65260250 TGTGAATATA
*
65260260 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
*
65260299 TATAAGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
* * *
65260338 TATATGCGAGAATTATATCCGGACTTTATGTCTGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
*
65260377 TATATGCGAGAATTATATCCGAACTT
1 TATATGCGAGAATTATATCCGGACTT
65260403 TTGTGACAGC
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
Found at i:65262215 original size:80 final size:80
Alignment explanation
Indices: 65262082--65262343 Score: 375
Period size: 80 Copynumber: 3.3 Consensus size: 80
65262072 ATTCGGATTG
* *
65262082 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCAGAAGGCA
65262147 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
65262162 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCAGAAGGCA
* *
65262227 ATTGTACGAGTTACT
66 TTTGTGCGAGTTACT
* * * **
65262242 ATAACCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTGAGTCCAGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCAGAAGGCA
* *
65262307 TTTGAGCGAG-AAGCT
66 TTTGTGCGAGTTA-CT
**
65262322 ATATCC-GGCTAAACCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
65262344 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
79 14 0.09
80 149 0.91
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCAGAAGGCA
TTTGTGCGAGTTACT
Found at i:65262324 original size:40 final size:40
Alignment explanation
Indices: 65262086--65262316 Score: 354
Period size: 40 Copynumber: 5.8 Consensus size: 40
65262076 GGATTGATAT
*
65262086 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65262126 CCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65262166 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
65262206 CCGGGCCAAGTCCTGAAGGCAATTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65262246 CCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
65262286 CCGGGCTGAGTCCAGAAGGCATTTGAGCGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
65262317 AAGCTATATC
Statistics
Matches: 173, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65270255 original size:40 final size:40
Alignment explanation
Indices: 65270059--65270247 Score: 276
Period size: 39 Copynumber: 4.8 Consensus size: 40
65270049 GGATTGATAT
**
65270059 CCGGGCTAAGTATCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65270099 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65270138 CCGGG-TCAA-TTCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65270177 CCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65270217 CCGGGCTGAGTCCCGAAGGCATTTGAGCGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
65270248 AAGCTATATC
Statistics
Matches: 135, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 71 0.53
40 64 0.47
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65270264 original size:79 final size:79
Alignment explanation
Indices: 65270072--65270247 Score: 273
Period size: 79 Copynumber: 2.2 Consensus size: 79
65270062 GGCTAAGTAT
*
65270072 CGAAGGCATTTGTGCGAGTTACTATAACCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT
*
65270136 AACCGGGTCAATTC
66 AACCGGGTCAATCC
* *
65270150 CGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT
* *
65270215 AACCGGGCTGAGTCC
66 AACCGGG-TCAATCC
*
65270230 CGAAGGCATTTGAGCGAG
1 CGAAGGCATTTGTGCGAG
65270248 AAGCTATATC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 32 0.36
79 36 0.41
80 20 0.23
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT
AACCGGGTCAATCC
Found at i:65270273 original size:79 final size:79
Alignment explanation
Indices: 65270072--65270274 Score: 223
Period size: 79 Copynumber: 2.6 Consensus size: 79
65270062 GGCTAAGTAT
* * * ** *
65270072 CGAAGGCATTTGTGCGAGTTACTATAACCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCAATTGAGCGAGTAACTATAACCGGGCTAAACCCCGAAGGCAATTGTGCGAGTTACTAT
*
65270136 AACCGGGTCAATTC
66 AACCGGGTCAATCC
* * ** *
65270150 CGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACTAT
1 CGAAGGCAATTGAGCGAGTAACTATAACCGGGCTAAACCCCGAAGGCAATTGTGCGAGTTACTAT
* *
65270215 AACCGGGCTGAGTCC
66 AACCGGG-TCAATCC
* *
65270230 CGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAAACCCCGAAGG
1 CGAAGGCAATTGAGCGAGTAA-CTATAACCGGGCTAAACCCCGAAGG
65270275 TACTTGGTTT
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
78 32 0.29
79 50 0.46
80 27 0.25
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (79 bp):
CGAAGGCAATTGAGCGAGTAACTATAACCGGGCTAAACCCCGAAGGCAATTGTGCGAGTTACTAT
AACCGGGTCAATCC
Found at i:65279873 original size:39 final size:39
Alignment explanation
Indices: 65279796--65279953 Score: 210
Period size: 39 Copynumber: 4.1 Consensus size: 39
65279786 TGTGAATATA
* * **
65279796 TATATGCCAGAATTATAT-CGGACTTCAGGTCCATAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* *
65279834 TATAAGCGAGAATTATATCCGGACTTCATGTCTGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
*
65279873 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* * * *
65279912 TATATGCGAGAATTATATCCAGACTTTAGGTTCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
65279951 TAT
1 TAT
65279954 GTGCTGGATA
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 16 0.15
39 91 0.85
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
Found at i:65287771 original size:48 final size:48
Alignment explanation
Indices: 65287700--65287982 Score: 288
Period size: 48 Copynumber: 5.9 Consensus size: 48
65287690 ATACTAGGGT
* * *
65287700 TATGTGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCGA
* * *
65287748 TATGTGAGCCAGTGTAAGACCATGTTT-GGAACATGGCATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTAGG-ACATGGCATCGGCCTCGA
* ** * **
65287796 TATGAGAGCTAGTGTAAGACCATGTCCAGGATATGGCATCGGCCTTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCGA
* * ** *
65287844 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCATCATTC-A
1 TATGAGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCGGC-CTCGA
* *
65287892 TATGAGAGCTAGTGTAAGACCATGTTT-GGACCATGGCATCCGCAC-CGATA
1 TATGAGAGCCAGTGTAAGACCATGTTTAGGA-CATGGCATCGGC-CTCG--A
*
65287942 TATGAGAGCCAGAT-TAAGACCATGTCTAGGACATGGCATCG
1 TATGAGAGCCAG-TGTAAGACCATGTTTAGGACATGGCATCG
65287983 ACATCTTGCC
Statistics
Matches: 197, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
47 5 0.03
48 152 0.77
49 3 0.02
50 33 0.17
51 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCGA
Found at i:65287876 original size:96 final size:95
Alignment explanation
Indices: 65287710--65287982 Score: 343
Period size: 96 Copynumber: 2.8 Consensus size: 95
65287700 TATGTGAGTC
* *
65287710 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATG-TTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTT
* *
65287775 GGAACATGGCATCGGCATTGATATGAGAGCT
65 AGAACATGGCATCGGCATTCATATGAGAGCT
* * *
65287806 AGTGTAAGACCATGTCCAGGATATGGCATCGGCCTTAATATGTGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGT-TAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTT
**
65287871 AGAACATGGCATCATCATTCATATGAGAGCT
65 AGAACATGGCATCGGCATTCATATGAGAGCT
* * *
65287902 AGTGTAAGACCATGTTTGGACCATGGCATCCGCAC-CGATATATGAGAGCCAGAT-TAAGACCAT
1 AGTGTAAGACCATGTTAGGA-CATGGCATCGGC-CTC-A-ATATGTGAGCCAG-TGTAAGACCAT
* *
65287965 GTCTAGGACATGGCATCG
61 GTTTAGAACATGGCATCG
65287983 ACATCTTGCC
Statistics
Matches: 153, Mismatches: 18, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
95 4 0.03
96 110 0.72
97 2 0.01
98 36 0.24
99 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTA
GAACATGGCATCGGCATTCATATGAGAGCT
Found at i:65295500 original size:48 final size:48
Alignment explanation
Indices: 65295424--65295561 Score: 170
Period size: 48 Copynumber: 2.8 Consensus size: 48
65295414 CTTCTGGGGT
*
65295424 TATGTGAGCCAGTGTAAGACCATTTTTGGGACATGGCATCAGC-CTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAC-CGA
* * * *
65295472 TATGTGAGCTAGTGTAAGGCCATGTTTGGAACATGGCATCCGCACCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGA
* * *
65295520 TACATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
1 T--ATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
65295562 GGCATCTTAC
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 42 0.55
49 1 0.01
50 33 0.43
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGA
Found at i:65299873 original size:50 final size:50
Alignment explanation
Indices: 65299798--65300225 Score: 374
Period size: 50 Copynumber: 8.8 Consensus size: 50
65299788 GATAAAATGT
* *
65299798 CGATGCCATGTCCCAGACATGGTCTTAAACTGACTCTCATACATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * ** *
65299848 CGATGCCATGTCCCAGACATGGTCTTACACTGA-T-ACATATAACAATGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * * * *
65299896 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATAT-T-GAG-GG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * *
65299944 CGATGCCATGTTCC--ACATGGTCTTACACT-AGCT-TGCATATACCGGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCT-CATATATCGGTGC
* * *
65299992 CAATGCCATGTCCCAAACATGGTCTTACACTGA----CATGTATCGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * *
65300038 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATATATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * *
65300088 TGATGCCATGTTCCAGACATGGTCTTACACTGA----CACATATCGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * * * *
65300134 CAATGTCATGTCCCAGACATGATCTTACACT-AGCTCCCATATACCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGGTGC
* * *
65300184 CGATGCCATGTCCTAGACGTGGTCTTACACTGGCTCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAT
65300226 TGCCATGGTC
Statistics
Matches: 307, Mismatches: 46, Indels: 50
0.76 0.11 0.12
Matches are distributed among these distances:
45 1 0.00
46 95 0.31
47 3 0.01
48 67 0.22
49 4 0.01
50 136 0.44
51 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:65299982 original size:46 final size:47
Alignment explanation
Indices: 65299896--65300227 Score: 214
Period size: 46 Copynumber: 6.9 Consensus size: 47
65299886 ATAACAATGA
65299896 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGG
1 CGATGCCATGTTCC-AACATGGTCTTACACTGGCTCGCATATTGAGGG
* * ***
65299944 CGATGCCATGTTCC-ACATGGTCTTACACTAGCTTGCATATACCGGTG
1 CGATGCCATGTTCCAACATGGTCTTACACTGGCTCGCATATTGAGG-G
* * * *
65299991 TCAATGCCATGTCCCAAACATGGTCTTACACTGACAT-G--TATCGA-GG
1 -CGATGCCATGTTCC-AACATGGTCTTACACTGGC-TCGCATATTGAGGG
* * *
65300037 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATATATCG-GTG
1 C-GATGCCATGTTCCA-ACATGGTCTTACACTGGCTCGCATAT-T-GAGGG
* * * *
65300087 CTGATGCCATGTTCCAGACATGGTCTTACACT-G-ACACATATCGAGGC
1 C-GATGCCATGTTCCA-ACATGGTCTTACACTGGCTCGCATATTGAGGG
* * * * * * ***
65300134 CAATGTCATGTCCCAGACATGATCTTACACTAGCTCCCATATACCGGTG
1 CGATGCCATGTTCCA-ACATGGTCTTACACTGGCTCGCATATTGAGG-G
* *
65300183 CCGATGCCATG-TCCTAGACGTGGTCTTACACTGGCTCTCATATTG
1 -CGATGCCATGTTCC-A-ACATGGTCTTACACTGGCTCGCATATTG
65300228 CCATGGTCCA
Statistics
Matches: 223, Mismatches: 42, Indels: 36
0.74 0.14 0.12
Matches are distributed among these distances:
45 3 0.01
46 83 0.37
47 5 0.02
48 46 0.21
49 3 0.01
50 82 0.37
51 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTTCCAACATGGTCTTACACTGGCTCGCATATTGAGGG
Found at i:65299998 original size:96 final size:96
Alignment explanation
Indices: 65299798--65300225 Score: 392
Period size: 96 Copynumber: 4.4 Consensus size: 96
65299788 GATAAAATGT
* * * * * *
65299798 CGATGCCATGTCCCAGACATGGTCTTAAACTGACTCTCATACATCG-GTGCCGATGCCATGTCCC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCAT--ATCGAG-GGCGATGCCATGTCCC
* * * **
65299862 AGACATGGTCTTACACT-GAT-ACATATAACAATG
63 A-ACATGGTCTTACACTAGCTCCCATATACCGGTG
* *
65299895 ACGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGGCGATGCCATGTTCC-A
1 -CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATCGAGGGCGATGCCATGTCCCAA
**
65299959 CATGGTCTTACACTAGCTTGCATATACCGGTG
65 CATGGTCTTACACTAGCTCCCATATACCGGTG
* * *
65299991 TCAATGCCATGTCCCAAACATGGTCTTACACTGACAT-G--TATCGA-GGCTGATGCCATGTCCC
1 -CGATGCCATGTTCCAAACATGGTCTTACACTGGC-TCGCATATCGAGGGC-GATGCCATGTCCC
* *
65300052 AGACATGGTCTTACACTGGCTCCCATATATCGGTG
63 A-ACATGGTCTTACACTAGCTCCCATATACCGGTG
* * * * * *
65300087 CTGATGCCATGTTCCAGACATGGTCTTACACT-G-ACACATATCGAGGCCAATGTCATGTCCCAG
1 C-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATCGAGGGCGATGCCATGTCCCA-
*
65300150 ACATGATCTTACACTAGCTCCCATATACCGGTG
64 ACATGGTCTTACACTAGCTCCCATATACCGGTG
* * *
65300183 CCGATGCCATG-TCCTAGACGTGGTCTTACACTGGCTCTCATAT
1 -CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCGCATAT
65300226 TGCCATGGTC
Statistics
Matches: 276, Mismatches: 38, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
93 3 0.01
94 32 0.12
95 6 0.02
96 188 0.68
97 6 0.02
98 41 0.15
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (96 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATCGAGGGCGATGCCATGTCCCAAC
ATGGTCTTACACTAGCTCCCATATACCGGTG
Found at i:65301609 original size:53 final size:54
Alignment explanation
Indices: 65301528--65301730 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 54
65301518 TTTTTAAACT
* *
65301528 TACCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACG
1 TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACG
* * * * * *
65301581 CACCATTGCCATG-CGTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTA-G
1 TACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACG
* * * * * * *
65301634 TTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTGTAAAACT
1 --TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACG
* * * *
65301690 TACCAATGCCATGCCTTGGCATAGTCTTACTTGGTATCCTT
1 TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
65301731 AAACCCTAAC
Statistics
Matches: 118, Mismatches: 26, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
52 1 0.01
53 42 0.36
54 36 0.31
55 38 0.32
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACG
Found at i:65304203 original size:14 final size:15
Alignment explanation
Indices: 65304177--65304207 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
65304167 TAATCATGCT
65304177 ATAATACATAAAATA
1 ATAATACATAAAATA
65304192 ATAATA-ATAAAATA
1 ATAATACATAAAATA
65304206 AT
1 AT
65304208 TTCTTCGACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAATACATAAAATA
Found at i:65306145 original size:8 final size:8
Alignment explanation
Indices: 65306134--65306164 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
65306124 ATCAACCTTT
65306134 TCTTAATC
1 TCTTAATC
65306142 TCTTAATC
1 TCTTAATC
65306150 TCTTAATC
1 TCTTAATC
65306158 TC-TAATC
1 TCTTAATC
65306165 ATATTCATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.22
8 18 0.78
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (8 bp):
TCTTAATC
Found at i:65309157 original size:50 final size:50
Alignment explanation
Indices: 65309082--65309512 Score: 302
Period size: 50 Copynumber: 8.8 Consensus size: 50
65309072 GGTAGAATGT
* * * * *
65309082 TGATGCCATATCCCGGACATGGTCTTACAGTGGCTCTCATACATCGGTGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGGTGC
* * ** *
65309132 TGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATATATCAATAC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGGTGC
* * * *
65309180 TGATGCCATGTTCCAAAACAAGGTCTTACACTGGCTCGCATAT-T-GAG-GC
1 TGATGCCATG-TCCCAGACATGGTCTTACACTGGCTCACATATATCG-GTGC
** * * * *
65309229 TGATGCCATGTTTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGGTGC
** * * **
65309279 CAATGCCATGTCCCAGACATGGTTTTATACT-G---ACACGTATCGAG-GC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCG-GTGC
* * * * *
65309325 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATATACCAGTAC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGGTGC
* * **
65309375 CGATGCCATGTCCCAGACATGGTCTTACA-T---TGACACGTATCGAG-GC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCG-GTGC
** * * * *
65309421 CAAAGCCATGTCTCAAACATGGTCTTACACTGGCTCCCATATA-CTGGTG-
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATC-GGTGC
* *
65309470 TCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCATATAT
1 T-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT
65309513 CACTATGTTC
Statistics
Matches: 292, Mismatches: 68, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
46 67 0.23
47 4 0.01
48 47 0.16
49 37 0.13
50 131 0.45
51 6 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (50 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGGTGC
Found at i:65309345 original size:96 final size:96
Alignment explanation
Indices: 65309130--65309502 Score: 426
Period size: 96 Copynumber: 3.9 Consensus size: 96
65309120 ATACATCGGT
* * * * ** * *
65309130 GCTGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATATATCAATACTGATGCCATGTTC
1 GCTGATGCCATGTCTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCGATGCCATG-TC
* * * * * * *
65309193 CAAAACAAGGTCTTACACTGGCTCGCATATTGAG
65 CCAGACATGGTTTTACACTGACACG--TATCGAG
* *
65309227 GCTGATGCCATGTTTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCAATGCCATGTCC
1 GCTGATGCCATGTCTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCGATGCCATGTCC
*
65309292 CAGACATGGTTTTATACTGACACGTATCGAG
66 CAGACATGGTTTTACACTGACACGTATCGAG
* * * *
65309323 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATATACCAGTACCGATGCCATGTCC
1 GCTGATGCCATGTCTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCGATGCCATGTCC
* *
65309388 CAGACATGGTCTTACATTGACACGTATCGAG
66 CAGACATGGTTTTACACTGACACGTATCGAG
** * * * * *
65309419 GCCAAAGCCATGTCTCAAACATGGTCTTACACTGGCTCCCATATACTGGTGTCGATGCCATGTCC
1 GCTGATGCCATGTCTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCGATGCCATGTCC
65309484 CAGACATGGTTTTACACTG
66 CAGACATGGTTTTACACTG
65309503 GCTCATATAT
Statistics
Matches: 234, Mismatches: 40, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
96 164 0.70
97 31 0.13
98 21 0.09
99 18 0.08
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (96 bp):
GCTGATGCCATGTCTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCGATGCCATGTCC
CAGACATGGTTTTACACTGACACGTATCGAG
Found at i:65309464 original size:192 final size:192
Alignment explanation
Indices: 65309130--65309502 Score: 498
Period size: 192 Copynumber: 1.9 Consensus size: 192
65309120 ATACATCGGT
* *
65309130 GCTGATGCCATGTCCCAAACATGGTCTTACACTGACACATATATCAATACTGATGCCATGTTCCA
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGACACATATACCAATACCGATGCCATGTTCCA
* * * ** * *
65309195 AAACAAGGTCTTACACTGGCTCGCATATTGAGGCTGATGCCATGTTTCAAACATGGTCTTACACT
66 AAACAAGGTCTTACACTGACACG-ATATCGAGGCCAAAGCCATGTCTCAAACATGGTCTTACACT
* *
65309260 AGCTCGCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTATACTGACACGTATCGAG
130 AGCTCCCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTACACTGACACGTATCGAG
* * * *
65309323 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATATACCAGTACCGATGCCATG-TC
1 GCTGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATATACCAATACCGATGCCATGTTC
* * * *
65309387 CCAGACATGGTCTTACATTGACACG-TATCGAGGCCAAAGCCATGTCTCAAACATGGTCTTACAC
64 CAAAACAAGGTCTTACACTGACACGATATCGAGGCCAAAGCCATGTCTCAAACATGGTCTTACAC
* * * *
65309451 TGGCTCCCATATACTGGTGTCGATGCCATGTCCCAGACATGGTTTTACACTG
129 TAGCTCCCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTACACTG
65309503 GCTCATATAT
Statistics
Matches: 155, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
192 80 0.52
193 32 0.21
194 22 0.14
195 21 0.14
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (192 bp):
GCTGATGCCATGTCCCAAACATGGTCTTACACTGACACATATACCAATACCGATGCCATGTTCCA
AAACAAGGTCTTACACTGACACGATATCGAGGCCAAAGCCATGTCTCAAACATGGTCTTACACTA
GCTCCCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTACACTGACACGTATCGAG
Found at i:65333901 original size:20 final size:20
Alignment explanation
Indices: 65333876--65333929 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
65333866 GTATCAACTA
**
65333876 AAAAATATTGATACTTTTAT
1 AAAAATATTGATACTCGTAT
**
65333896 AAAAATATCAATACTCGTAT
1 AAAAATATTGATACTCGTAT
*
65333916 AAAAATGTTGATAC
1 AAAAATATTGATAC
65333930 CACTGGGCTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.35
Consensus pattern (20 bp):
AAAAATATTGATACTCGTAT
Found at i:65336066 original size:22 final size:23
Alignment explanation
Indices: 65336023--65336067 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
65336013 AATTTTCATA
*
65336023 AAACAAGGTCACATGGCAGTGTGG
1 AAACAAGG-CACATGCCAGTGTGG
*
65336047 AAACAAGG-ACATGCCCGTGTG
1 AAACAAGGCACATGCCAGTGTG
65336068 CCCCTGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.33, C:0.20, G:0.31, T:0.16
Consensus pattern (23 bp):
AAACAAGGCACATGCCAGTGTGG
Found at i:65339226 original size:43 final size:43
Alignment explanation
Indices: 65339165--65339406 Score: 268
Period size: 43 Copynumber: 5.8 Consensus size: 43
65339155 AGCACTCAAT
* *
65339165 ATATAATATATTCAGGTTAAAGTCCCGCAGGCTTCATGCTGGTA
1 ATAT-ATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTA
* * * *
65339209 ATATATATATCCGGGTTAAAGTCTCGTAGGCTTCGTGCTAGTA
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTA
* *
65339252 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTAGT-
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTA
* *
65339294 A-ATATATATCCGGGTTAAA-TCCCGCAGGCTTCCTACTGGTA
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTA
* *
65339335 ATATATATATCCGTGTTAAA-TCCGGCAGGCTT-AGTGCTGG--
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCA-TGCTGGTA
* *
65339375 -TA-CTATATCCGGGCTTAAAGTCGCGCAGGCTT
1 ATATATATATCCGGG-TTAAAGTCCCGCAGGCTT
65339407 TGAGCCAACG
Statistics
Matches: 174, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 9 0.05
39 7 0.04
40 28 0.16
41 19 0.11
42 34 0.20
43 73 0.42
44 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (43 bp):
ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTA
Found at i:65339269 original size:86 final size:85
Alignment explanation
Indices: 65339165--65339382 Score: 273
Period size: 83 Copynumber: 2.6 Consensus size: 85
65339155 AGCACTCAAT
* *
65339165 ATATAATATATTCAGGTTAAAGTCCCGCAGGCTTCATGCTGGTAATATATATATCCGGGTTAAAG
1 ATAT-ATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTAATATATATATCCGGGTTAAA-
* * * *
65339230 TCTCGTAGGCTTCGTGCTAGTA
64 TCCCGCAGGCTTCCTACTAGTA
* *
65339252 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTAGT-A-ATATATATCCGGGTTAAATC
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTAATATATATATCCGGGTTAAATC
*
65339315 CCGCAGGCTTCCTACTGGTA
66 CCGCAGGCTTCCTACTAGTA
* * *
65339335 ATATATATATCCGTGTTAAA-TCCGGCAGGCTT-AGTGCTGGTACTATAT
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCA-TGCTGGTAATATAT
65339383 CCGGGCTTAA
Statistics
Matches: 114, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
82 17 0.15
83 36 0.32
84 22 0.19
85 1 0.01
86 34 0.30
87 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (85 bp):
ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGTAATATATATATCCGGGTTAAATC
CCGCAGGCTTCCTACTAGTA
Found at i:65347144 original size:42 final size:43
Alignment explanation
Indices: 65346994--65347193 Score: 204
Period size: 45 Copynumber: 4.8 Consensus size: 43
65346984 AGCGCTCAAT
*
65346994 ATATAATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAA
1 ATAT-ATATATCCGAGTTAAAGTCCCGCAGGCTTCGTGCTGGT-A
65347039 TATATATATATCC-ATGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
1 -ATATATATATCCGA-GTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* * * *
65347083 A-A-ATATATCCGGGTTAAA-TCCCACAGGCTTGGTGCTGGCA
1 ATATATATATCCGAGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* *
65347123 ATATATATATTCGAGTTAAA-TCCCGCAGGCTTAGTG-TGG--
1 ATATATATATCCGAGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* *
65347162 -TA-CTATATCCGGGCTTAAAGTCCCGCAGGCTT
1 ATATATATATCCGAG-TTAAAGTCCCGCAGGCTT
65347194 TGAGCCAGTG
Statistics
Matches: 136, Mismatches: 12, Indels: 19
0.81 0.07 0.11
Matches are distributed among these distances:
37 8 0.06
38 7 0.05
39 12 0.09
40 20 0.15
41 18 0.13
42 29 0.21
43 1 0.01
44 1 0.01
45 36 0.26
46 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (43 bp):
ATATATATATCCGAGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
Found at i:65348280 original size:48 final size:48
Alignment explanation
Indices: 65348228--65348460 Score: 238
Period size: 48 Copynumber: 4.8 Consensus size: 48
65348218 ATGAATCCAC
*
65348228 ATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCATAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATAT
* *
65348276 ATATCATC-CTCAATGCCAT-TGCCCAGACATGGTCTTACACTGGCACAT
1 ATATCATCGC-CGATGCCATGT-CCCAGACATGGTCTTACACTGGCATAT
* * * ** *
65348324 ATATCATCGCTGTTGCCATGTCCAAGACATAATCTTACACTGGCATAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATAT
** * * * *
65348372 ATATTGTTGCCGATGCCATGTCCCAGACATGGTCTTACACAGTCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATAT
* * * *
65348420 ATCTTGGAT-GTCGATACCATGTCCCAGACATGGTCTTACAC
1 AT-AT-CATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
65348461 AGAATTTCAT
Statistics
Matches: 151, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
47 2 0.01
48 115 0.76
49 33 0.22
50 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATAT
Found at i:65348360 original size:96 final size:96
Alignment explanation
Indices: 65348189--65348421 Score: 249
Period size: 96 Copynumber: 2.4 Consensus size: 96
65348179 AAATAAAGTA
* * ** * *
65348189 CCAATGCCATGTCCTC-GACACGGTCTTACATGAATC-CACATATCATCGCCGATGCCATGTCCT
1 CCAATGCCATGTCC-CAGACATGGTCTTACA-CAGGCACATATATCATCGCCGATGCCATGTCCA
** *
65348252 AGACATGGTCTTACACTGGCATATATA-TCATC
64 AGACATAATCTTACACTGGCATACATATTCATC
* * *
65348284 CTCAATGCCAT-TGCCCAGACATGGTCTTACACTGGCACATATATCATCGCTGTTGCCATGTCCA
1 C-CAATGCCATGT-CCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGCCATGTCCA
** *
65348348 AGACATAATCTTACACTGGCATACATATTGTTG
64 AGACATAATCTTACACTGGCATACATATTCATC
* *
65348381 CCGATGCCATGTCCCAGACATGGTCTTACACAGTCACATAT
1 CCAATGCCATGTCCCAGACATGGTCTTACACAGGCACATAT
65348422 CTTGGATGTC
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
95 4 0.04
96 106 0.93
97 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (96 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATGCCATGTCCAAG
ACATAATCTTACACTGGCATACATATTCATC
Found at i:65352311 original size:48 final size:47
Alignment explanation
Indices: 65352255--65352350 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 47
65352245 TCATTGGCAA
*
65352255 AGGATACTTGTTCTTTACTGTCACCTTTTTGAGCTGTCGATAATCTAT
1 AGGATACTTGTTCTTTACTGTCACC-TGTTGAGCTGTCGATAATCTAT
65352303 AGGATACTTGTTCTTTACTGTCACCTGTTGAGCTGTCGATAATCTAT
1 AGGATACTTGTTCTTTACTGTCACCTGTTGAGCTGTCGATAATCTAT
65352350 A
1 A
65352351 CATAGCCTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 22 0.47
48 25 0.53
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (47 bp):
AGGATACTTGTTCTTTACTGTCACCTGTTGAGCTGTCGATAATCTAT
Found at i:65356127 original size:48 final size:48
Alignment explanation
Indices: 65356070--65356319 Score: 174
Period size: 48 Copynumber: 5.2 Consensus size: 48
65356060 CATGTCCCTG
65356070 ACATGGTCTTACA-TGAATCC-TCATATCATCGCCGATGCCATTATCC-AA
1 ACATGGTCTTACACTG-ATCCAT-ATATCATCGCCGATGCCA-TATCCTAA
* * * * *
65356118 ACATGGTCTTACACTGGTCCATATATCATCGCTGATGTCATGTCCTAG
1 ACATGGTCTTACACTGATCCATATATCATCGCCGATGCCATATCCTAA
* * * *
65356166 ACATGGTCTTACACTG-GCACATATATCATCGCTGATGCCATGTCCCAA
1 ACATGGTCTTACACTGATC-CATATATCATCGCCGATGCCATATCCTAA
* * * * * * *
65356214 TCATGGTCGTACACTG-GCACATATATCATCGTCGTTGCCATGTCCCT-G
1 ACATGGTCTTACACTGATC-CATATATCATCGCCGATGCCATAT-CCTAA
* * * * * *
65356262 ACATGATCTTATAGTGGCATACATAT-T-ATCGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACT-G-ATCCATATATCATCGCCGATGCCATATCCTAA
65356310 ACATGGTCTT
1 ACATGGTCTT
65356320 GCACAGGCAC
Statistics
Matches: 167, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
47 8 0.05
48 147 0.88
49 7 0.04
50 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (48 bp):
ACATGGTCTTACACTGATCCATATATCATCGCCGATGCCATATCCTAA
Found at i:65356227 original size:96 final size:96
Alignment explanation
Indices: 65356056--65356372 Score: 306
Period size: 96 Copynumber: 3.3 Consensus size: 96
65356046 TAAAGTACCA
* * * *
65356056 ATGCCATGTCCCTGACATGGTCTTACA-T-GAATCCTCATATCATCGCCGATGCCAT-TATCCAA
1 ATGCCATGTCCCTGACATGATCTTACACTGGCA--CACATATCATCGCCGATGCCATGT-CCCAA
*
65356118 ACATGGTCTTACACTGGTC-CATATATCATCG-CTG
63 ACATGGTCGTACACTGG-CACATATATCATCGTC-G
* * * * *
65356152 ATGTCATGT-CCTAGACATGGTCTTACACTGGCACATATATCATCGCTGATGCCATGTCCCAATC
1 ATGCCATGTCCCT-GACATGATCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAAAC
65356216 ATGGTCGTACACTGGCACATATATCATCGTCG
65 ATGGTCGTACACTGGCACATATATCATCGTCG
* * * * * * *
65356248 TTGCCATGTCCCTGACATGATCTTATAGTGGCATACATATTATCGCCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCTGACATGATCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAAACA
* * * *
65356313 TGGTCTTGCACAGGCACATATCTCAGAT-GTCG
66 TGGTCGTACACTGGCACATATATC--ATCGTCG
* *
65356345 ATGCCATGTCCCAGACATGTTCTTACAC
1 ATGCCATGTCCCTGACATGATCTTACAC
65356373 AAAATTTCAT
Statistics
Matches: 183, Mismatches: 29, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
95 4 0.02
96 142 0.78
97 33 0.18
98 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (96 bp):
ATGCCATGTCCCTGACATGATCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAAACA
TGGTCGTACACTGGCACATATATCATCGTCG
Found at i:65361432 original size:44 final size:43
Alignment explanation
Indices: 65361341--65361551 Score: 120
Period size: 44 Copynumber: 4.5 Consensus size: 43
65361331 GACGAGAGCT
*
65361341 AGTGTAAGACATGTTTGGGACATTATCGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTTTGGGACATCATCGCCTCGAGATGT-AGCC
* * *
65361385 AGTGTGAGACATGTTTGGG-CAATGCATCGTCTACGAGATGT-GTC
1 AGTGTAAGACATGTTTGGGAC-AT-CATCGCCT-CGAGATGTAGCC
* * * * *
65361429 AGTGTAAGACTATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCT
1 AGTGTAAGAC-ATGTTTGGGACAT--CATCGCCTC-GAGATGT---AGCC
* * ** *
65361479 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGTC
1 AGTGTAAGA-CATGTTTGGGACAT--CATC-GCCTCGA-GATG-TAGCC
65361528 AGTGTAAGACCATGTTTGGGACAT
1 AGTGTAAGA-CATGTTTGGGACAT
65361552 GGCATTCACT
Statistics
Matches: 134, Mismatches: 18, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 31 0.23
45 17 0.13
46 22 0.16
49 25 0.19
50 30 0.22
51 7 0.05
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (43 bp):
AGTGTAAGACATGTTTGGGACATCATCGCCTCGAGATGTAGCC
Found at i:65361549 original size:49 final size:50
Alignment explanation
Indices: 65361247--65361556 Score: 179
Period size: 50 Copynumber: 6.6 Consensus size: 50
65361237 TTTGTGTGCT
* * *
65361247 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGC-CAC-AT-TATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGTC
* * *
65361293 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA---TTAAGACGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATG-TGAGAGTC
* * * *
65361340 TAGTGTAAGA-CATGTTTGGGACAT--TATC-GC-CTCGAGATGT-A-AGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGTC
* * * *
65361385 AGTGTGAGA-CATGTTTGGG-CAAT-GCATCGTCTA-CGAGATGT----GTC
1 AGTGTAAGACCATGTCTGGGAC-ATGGCATCGGC-ACCGATATGTGAGAGTC
* *
65361429 AGTGTAAGACTATGTCTGGGACATGGCATCGGCACGGATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTGAGAGTC
* * *
65361478 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGC-CTCGAT-TTTGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGTC
*
65361528 AGTGTAAGACCATGTTTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
65361557 TCACTTGATG
Statistics
Matches: 208, Mismatches: 29, Indels: 51
0.72 0.10 0.18
Matches are distributed among these distances:
43 1 0.00
44 34 0.16
45 19 0.09
46 33 0.16
47 29 0.14
48 21 0.10
49 35 0.17
50 36 0.17
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTGAGAGTC
Found at i:65389384 original size:55 final size:55
Alignment explanation
Indices: 65389300--65389409 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 55
65389290 CACATGAAAA
*
65389300 ACATTATGAATTCAATCAAGTTTTGGTGGTACATCTAACCAATATGCAACAGGTC
1 ACATTATGAATTCAATCAAGTTCTGGTGGTACATCTAACCAATATGCAACAGGTC
* * *
65389355 ACATTATGAA-TCTGATCAAGTTCTGGTGGTACATCTAACCTATGTGCAACAGGTC
1 ACATTATGAATTC-AATCAAGTTCTGGTGGTACATCTAACCAATATGCAACAGGTC
65389410 CAGTTCTTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 2 0.04
55 48 0.96
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (55 bp):
ACATTATGAATTCAATCAAGTTCTGGTGGTACATCTAACCAATATGCAACAGGTC
Found at i:65397150 original size:28 final size:26
Alignment explanation
Indices: 65397119--65397182 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
65397109 AATTACTTGA
* *
65397119 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
65397147 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
65397173 ATACCCCTAG
1 ATACCCCTAG
65397183 GGTTACTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.70
27 1 0.03
28 9 0.27
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:65406673 original size:31 final size:31
Alignment explanation
Indices: 65406630--65406695 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
65406620 AACCCTTCTT
* * *
65406630 GCATTAAATCCAACCAAAAATAGTAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
65406661 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
65406692 GCAT
1 GCAT
65406696 AAAAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.20, G:0.11, T:0.18
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:65407460 original size:13 final size:14
Alignment explanation
Indices: 65407434--65407462 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
65407424 ACTAATGACG
65407434 AATTAAACCATTAT
1 AATTAAACCATTAT
65407448 AATTAAA-CATTAT
1 AATTAAACCATTAT
65407461 AA
1 AA
65407463 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:65412510 original size:9 final size:9
Alignment explanation
Indices: 65412496--65412627 Score: 62
Period size: 9 Copynumber: 14.7 Consensus size: 9
65412486 TAAGTATAAT
65412496 TAAGTTATG
1 TAAGTTATG
65412505 TAAGTTATG
1 TAAGTTATG
* * *
65412514 ATATGATATA
1 -TAAGTTATG
*
65412524 T-ATTTATG
1 TAAGTTATG
*
65412532 T-A-TTATA
1 TAAGTTATG
65412539 TAAGTTATG
1 TAAGTTATG
*
65412548 TAAATTATG
1 TAAGTTATG
65412557 TAAGTTATCCG
1 TAAGTTAT--G
65412568 -AA-TTATG
1 TAAGTTATG
*
65412575 TAAATTATG
1 TAAGTTATG
* *
65412584 TACGATATAATA
1 TAAG-T-T-ATG
*
65412596 TATATTTATG
1 TA-AGTTATG
65412606 T-A-TTATG
1 TAAGTTATG
65412613 TAAGTTATG
1 TAAGTTATG
65412622 TAAGTT
1 TAAGTT
65412628 GTTGATGGGA
Statistics
Matches: 93, Mismatches: 17, Indels: 26
0.68 0.12 0.19
Matches are distributed among these distances:
7 12 0.13
8 10 0.11
9 51 0.55
10 12 0.13
11 3 0.03
12 5 0.05
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:65413000 original size:106 final size:106
Alignment explanation
Indices: 65412747--65415407 Score: 4587
Period size: 106 Copynumber: 25.2 Consensus size: 106
65412737 AAAATAAAAT
65412747 ATTT-AAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
65412811 TTTAAAAT-AAACTTTAAATACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65412851 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65412916 TTTAAAATAAAAATTTAAACACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65412957 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65413022 TTTAAAATAAAAATTTAAACACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
65413063 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATTAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65413128 TTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65413169 ATTTAAAAATTAAAATAAAAGTAGACAAAATA-TTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * *
65413233 TTTAAAATAAAAATTTAAATACAATTTAATCTAATTAGGTC
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
65413274 ATTTAAAAATTAAAATAAAAGTAGACAAAATATATTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
65413339 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGCA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* * *
65413380 ATTTAAAAATTAAAATAAAAGTAGATAATATATTTTTAATGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
65413445 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* *
65413486 AGTTAAAAAGTAAAATAAAAGTAGACAAAATATTTTTCA-TGATTAAATTAAAATCGAA-TAAAA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTT-AGTGATTAAATTAAAATC-AAGTAAAA
* *
65413549 TATTTAAAATAAAACTTTAAATCCAATTTCATTTAATTAGGTA
64 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65413592 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65413657 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAAGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
65413698 ATTTAAAAAATAAAATAAAAGTAGACAAAATATTTTT-GTGATTAAATTAAAATCCAA-TAAAAT
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAAT-CAAGTAAAAT
65413761 ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65 ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65413803 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
**
65413868 TTTAAAATAAAACTTTAAGGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65413909 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65413974 TTTAAAATAAAAATTTAAACACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65414015 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65414080 TTTAAAATAAAAATTTAAACACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
65414121 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATTAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65414186 TTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65414227 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65414292 TTTAAAATAAAAATTTAAACACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
65414333 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATTAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65414398 TTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65414439 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * *
65414504 TTTAAAATAAAAATTTAAATACAATTTAATCTAATTAGGTC
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
65414545 ATTTAAAAATTAAAATAAAAGTAGACAAAATATATTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
65414610 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGCA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* *
65414651 ATTTAAAAATTAAAATAAAAGTAGACAATATATTTTTAATGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
65414716 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* *
65414757 AGTTAAAAAGTAAAATAAAAGTAGACAAAATATTTTTCA-TGATTAAATTAAAATCGAA-TAAAA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTT-AGTGATTAAATTAAAATC-AAGTAAAA
* *
65414820 TATTTAAAATAAAACTTTAAATCCAATTTCATTTAATTAGGTA
64 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65414863 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
65414928 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAAGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65414969 ATTTAAAAA-TAAAATAAAAGTAGACAAAATATTTTT-GTGATTAAATTAAAATCCAA-TAAAAT
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAAT-CAAGTAAAAT
65415031 ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65 ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65415073 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
**
65415138 TTTAAAATAAAACTTTAAGGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* *
65415179 CTTTGAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
65415244 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* ** *
65415285 ATTTAAAAAATAAAATAAAAGTAGAC--AATATTTTCCGTGATTAAATTAAAATCAAATAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * * *
65415348 TTCAAAATAAAACTTTAAATACATTTTAATCTAATTCGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
65415389 ATTTAAAAA-TAAAATAAAA
1 ATTTAAAAATTAAAATAAAA
65415408 ATTTTAAAAT
Statistics
Matches: 2444, Mismatches: 95, Indels: 37
0.95 0.04 0.01
Matches are distributed among these distances:
103 10 0.00
104 154 0.06
105 336 0.14
106 1938 0.79
107 6 0.00
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (106 bp):
ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
Found at i:65413146 original size:37 final size:36
Alignment explanation
Indices: 65413104--65413252 Score: 85
Period size: 37 Copynumber: 4.2 Consensus size: 36
65413094 ATTTTTAGTG
65413104 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
* * * * ** **
65413140 ATTTAAA-TACAAGTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATTA-AAATTAAGTAAAATATTTAAAATAAAA
* * * ***
65413177 ATTAAAATAAAAGT-AGACAAAATATTT----TAGTG
1 ATTAAATTAAAATTAAG-TAAAATATTTAAAATAAAA
*
65413209 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
65413245 ATTTAAAT
1 A-TTAAAT
65413253 ACAATTTAAT
Statistics
Matches: 77, Mismatches: 26, Indels: 19
0.63 0.21 0.16
Matches are distributed among these distances:
32 22 0.29
33 2 0.03
35 1 0.01
36 19 0.25
37 33 0.43
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (36 bp):
ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
Found at i:65414204 original size:37 final size:36
Alignment explanation
Indices: 65413950--65414523 Score: 127
Period size: 37 Copynumber: 16.2 Consensus size: 36
65413940 ATTTTTAGTG
* *
65413950 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
* * * * * ** *
65413986 ATTTAAA-CACAATTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATTA-AAATTAAGTAAAATATTTAAATTAAAA
* * * ***
65414023 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATTAAATTAAAATTAAG-TAAAATATTTAAATTAAAA
* *
65414056 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
* * * * * ** *
65414092 ATTTAAA-CACAATTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATTA-AAATTAAGTAAAATATTTAAATTAAAA
* * * ***
65414129 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATTAAATTAAAATTAAG-TAAAATATTTAAATTAAAA
*
65414162 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
* * * * ** *
65414198 ATTTAAA-TACAAGTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATTA-AAATTAAGTAAAATATTTAAATTAAAA
* * * ***
65414235 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATTAAATTAAAATTAAG-TAAAATATTTAAATTAAAA
* *
65414268 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
* * * * * ** *
65414304 ATTTAAA-CACAATTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATTA-AAATTAAGTAAAATATTTAAATTAAAA
* * * ***
65414341 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATTAAATTAAAATTAAG-TAAAATATTTAAATTAAAA
*
65414374 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
* * * * ** *
65414410 ATTTAAA-TACAAGTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATTA-AAATTAAGTAAAATATTTAAATTAAAA
* * * ***
65414447 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATTAAATTAAAATTAAG-TAAAATATTTAAATTAAAA
* *
65414480 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
65414516 ATTTAAAT
1 A-TTAAAT
65414524 ACAATTTAAT
Statistics
Matches: 355, Mismatches: 142, Indels: 81
0.61 0.25 0.14
Matches are distributed among these distances:
33 117 0.33
34 10 0.03
35 5 0.01
36 88 0.25
37 135 0.38
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (36 bp):
ATTAAATTAAAATTAAGTAAAATATTTAAATTAAAA
Found at i:65423454 original size:21 final size:21
Alignment explanation
Indices: 65423430--65423471 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
65423420 TCATCAGATC
* *
65423430 TACACTTTGAGGCATCGGGGG
1 TACACGTTGAGGAATCGGGGG
*
65423451 TACAGGTTGAGGAATCGGGGG
1 TACACGTTGAGGAATCGGGGG
65423472 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.43, T:0.21
Consensus pattern (21 bp):
TACACGTTGAGGAATCGGGGG
Found at i:65427880 original size:19 final size:19
Alignment explanation
Indices: 65427856--65427923 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
65427846 TAAAATAATA
65427856 ATTTATATATATTTATCTT
1 ATTTATATATATTTATCTT
** * *
65427875 ATTTATAT-TA-AAATAATA
1 ATTTATATATATTTAT-CTT
*
65427893 ATTTATATATTTTTATCTT
1 ATTTATATATATTTATCTT
65427912 ATTTATATATAT
1 ATTTATATATAT
65427924 CTTCTAAATT
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 2 0.06
18 11 0.31
19 21 0.58
20 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTATATATATTTATCTT
Found at i:65427887 original size:37 final size:37
Alignment explanation
Indices: 65427840--65427919 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
65427830 TTGATATATA
*
65427840 TTATTTTAAAATAATAATTTATATATATTTATCTTAT
1 TTATATTAAAATAATAATTTATATATATTTATCTTAT
*
65427877 TTATATTAAAATAATAATTTATATATTTTTATCTTAT
1 TTATATTAAAATAATAATTTATATATATTTATCTTAT
65427914 TTATAT
1 TTATAT
65427920 ATATCTTCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (37 bp):
TTATATTAAAATAATAATTTATATATATTTATCTTAT
Found at i:65427971 original size:7 final size:7
Alignment explanation
Indices: 65427952--65428007 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
65427942 AAATTATACT
65427952 CTAAA-C
1 CTAAACC
65427958 CTGAAACC
1 CT-AAACC
65427966 CTAAA-C
1 CTAAACC
*
65427972 CTAAGACT
1 CTAA-ACC
65427980 CTAAACC
1 CTAAACC
*
65427987 CTAAACT
1 CTAAACC
65427994 CTAAACC
1 CTAAACC
*
65428001 TTAAACC
1 CTAAACC
65428008 ACAAACACAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
6 7 0.17
7 27 0.66
8 7 0.17
ACGTcount: A:0.43, C:0.34, G:0.04, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:65434345 original size:28 final size:27
Alignment explanation
Indices: 65434288--65434439 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
65434278 TAAATTGTGC
*
65434288 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
65434315 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
65434343 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65434370 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
65434398 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65434425 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65434440 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:65434352 original size:55 final size:55
Alignment explanation
Indices: 65434288--65434439 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
65434278 TAAATTGTGC
*
65434288 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
65434343 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
65434398 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
65434440 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:65442389 original size:28 final size:27
Alignment explanation
Indices: 65442332--65442483 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
65442322 TAAATTGTGC
*
65442332 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
65442359 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
65442387 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65442414 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
65442442 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65442469 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65442484 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:65442396 original size:55 final size:55
Alignment explanation
Indices: 65442332--65442483 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
65442322 TAAATTGTGC
*
65442332 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
65442387 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
65442442 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
65442484 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:65450592 original size:20 final size:20
Alignment explanation
Indices: 65450567--65450606 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
65450557 GGCTCAAAAA
*
65450567 TTTGATAATGAGTTGCAAGC
1 TTTGATAATGAGTTACAAGC
65450587 TTTGATAATGAGTTACAAGC
1 TTTGATAATGAGTTACAAGC
65450607 AAAACGAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (20 bp):
TTTGATAATGAGTTACAAGC
Found at i:65463604 original size:44 final size:44
Alignment explanation
Indices: 65463550--65463643 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
65463540 GAAAAGAAAC
* * * *
65463550 AAGTCAAAAGAGAGGCTCGGGTTTTTGGTAAAAGAACTATTAGT
1 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
65463594 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
1 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
65463638 AAGTTA
1 AAGTTA
65463644 CAATCATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (44 bp):
AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
Found at i:65474239 original size:15 final size:15
Alignment explanation
Indices: 65474207--65474235 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65474197 ATTTTCTGTG
65474207 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
65474222 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
65474236 ATTTTCGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:65475393 original size:45 final size:45
Alignment explanation
Indices: 65475329--65475588 Score: 257
Period size: 45 Copynumber: 5.9 Consensus size: 45
65475319 TAGGATTTCG
* * *
65475329 ATATGTGATTTTGTGTAAGACCACATCTGGGACGTTGGCATCAAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
65475374 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * *
65475419 ATATATGATTTCGTGTAAGACCACGTCTGGGACATTTGTATCGAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * ** *
65475464 ATATGT-AGTTACATGTAAGACCATGTCTGGGACATCAGCCTCG-T
1 ATATGTGA-TTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
**
65475508 AT-T-TGA-TTCGTGTAAGACCTTGTCTGGGACAG-TGGCATCG--
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT
* ** * *
65475548 ATATGAGATAGCATGTAAGACCACGTTTGGGACGTTGGCAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
65475589 TTTATGGTAT
Statistics
Matches: 179, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
40 2 0.01
41 27 0.15
42 4 0.02
43 26 0.15
44 4 0.02
45 116 0.65
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (45 bp):
ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:65482115 original size:15 final size:15
Alignment explanation
Indices: 65482083--65482111 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65482073 ATTTTTTGTG
65482083 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
65482098 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
65482112 ATTTTGTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:65483217 original size:45 final size:45
Alignment explanation
Indices: 65483168--65483276 Score: 155
Period size: 45 Copynumber: 2.4 Consensus size: 45
65483158 TTGATTTTTT
* * *
65483168 GTAAGACCACGTCTGGGGCGTTGGCATCGATATATGTGATTTCAA
1 GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGATTACAA
* **
65483213 GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGGTTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGATTACAA
*
65483258 GTAAGACCATGTCTGGGAC
1 GTAAGACCACGTCTGGGAC
65483277 ATCGACATCG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (45 bp):
GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGATTACAA
Found at i:65483652 original size:16 final size:16
Alignment explanation
Indices: 65483631--65483681 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
65483621 TGACTTATGA
65483631 GTATATGCATATAAGT
1 GTATATGCATATAAGT
*
65483647 GTATATG--TAT--GA
1 GTATATGCATATAAGT
65483659 GTATATGCATATAAGT
1 GTATATGCATATAAGT
65483675 GTATATG
1 GTATATG
65483682 TACTTGGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 8 0.28
14 6 0.21
16 15 0.52
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (16 bp):
GTATATGCATATAAGT
Found at i:65483657 original size:28 final size:28
Alignment explanation
Indices: 65483626--65483683 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
65483616 TACTCTGACT
65483626 TATGAGTATATGCATATAAGTGTATATG
1 TATGAGTATATGCATATAAGTGTATATG
65483654 TATGAGTATATGCATATAAGTGTATATG
1 TATGAGTATATGCATATAAGTGTATATG
65483682 TA
1 TA
65483684 CTTGGTATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.40
Consensus pattern (28 bp):
TATGAGTATATGCATATAAGTGTATATG
Found at i:65486748 original size:22 final size:20
Alignment explanation
Indices: 65486709--65486752 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
65486699 GAGTTAAGGT
65486709 GTTTTAAGGTAAAAAACTAGG
1 GTTTTAAGGTAAAAAACT-GG
* *
65486730 GTTTTAAAGGTTAATAACTGG
1 GTTTT-AAGGTAAAAAACTGG
65486751 GT
1 GT
65486753 AAATTAAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (20 bp):
GTTTTAAGGTAAAAAACTGG
Found at i:65491806 original size:39 final size:39
Alignment explanation
Indices: 65491747--65491901 Score: 256
Period size: 39 Copynumber: 4.0 Consensus size: 39
65491737 TTATTACCAA
*
65491747 CACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 CACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAG
65491786 CACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAG
1 CACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAG
* * *
65491825 CACGAAGCCTGCGGGTCTTTGGCCCGGATATATTTCCAG
1 CACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAG
* *
65491864 CACAAAGCCTGCGGGTCTTTTGCCCGGATATATTTCCA
1 CACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCA
65491902 TACACATTTC
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.25
Consensus pattern (39 bp):
CACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAG
Found at i:65495129 original size:27 final size:27
Alignment explanation
Indices: 65495091--65495152 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
65495081 CAAAAACGGT
* * *
65495091 AATATAATCGACACACAGTCATGACTA
1 AATATGATCGACACACAGTCATCAATA
*
65495118 AATATGATCGACACAGAGTCATCAATA
1 AATATGATCGACACACAGTCATCAATA
65495145 AATATGAT
1 AATATGAT
65495153 AGGCACATGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (27 bp):
AATATGATCGACACACAGTCATCAATA
Found at i:65495159 original size:27 final size:27
Alignment explanation
Indices: 65495091--65495159 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
65495081 CAAAAACGGT
* * * *
65495091 AATATAATCGACACACAGTCATGACTA
1 AATATGATAGACACACAGTCATCAATA
* *
65495118 AATATGATCGACACAGAGTCATCAATA
1 AATATGATAGACACACAGTCATCAATA
*
65495145 AATATGATAGGCACA
1 AATATGATAGACACA
65495160 TGGCCACTGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (27 bp):
AATATGATAGACACACAGTCATCAATA
Found at i:65496490 original size:46 final size:46
Alignment explanation
Indices: 65496423--65496591 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
65496413 AACCCACCCC
* *
65496423 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
65496469 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCATCCA
* * * ***
65496517 TCA-CGAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
65496562 TAGGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
65496592 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 55 0.55
47 27 0.27
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
Found at i:65496539 original size:93 final size:93
Alignment explanation
Indices: 65496428--65496598 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
65496418 ACCCCTAAGT
***
65496428 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65496493 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
65496521 GAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65496586 CGAGTTTGGATGC
66 CGAGTTCGGATGC
65496599 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65497057 original size:30 final size:30
Alignment explanation
Indices: 65497023--65497082 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
65497013 ATTTAATACG
*
65497023 AACTTTGGAAAAATTATACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65497053 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65497083 GCCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65497913 original size:54 final size:54
Alignment explanation
Indices: 65497850--65497999 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 54
65497840 AGTGGTATCA
* *
65497850 TGGTAATTTTACAATACAAGAGTATTTTGGTAATTTTACAAATT-GAGGGTATTT
1 TGGTAATTTTACAA-ACAGGGGTATTTTGGTAATTTTACAAATTCGAGGGTATTT
* * * * *
65497904 TTGTAATTTTAAAAATTAGGGGTATTTTGATAATTTTA-TAATTCGAGGGTATTT
1 TGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAATTCGAGGGTATTT
*
65497958 TGGTAATTTTACAAACTGGGGATATTTTGGTAATTTTACAAA
1 TGGTAATTTTACAAACAGGGG-TATTTTGGTAATTTTACAAA
65498000 CTGAAGGTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
53 9 0.11
54 68 0.86
55 2 0.03
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.44
Consensus pattern (54 bp):
TGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAATTCGAGGGTATTT
Found at i:65498001 original size:27 final size:26
Alignment explanation
Indices: 65497850--65498002 Score: 155
Period size: 27 Copynumber: 5.7 Consensus size: 26
65497840 AGTGGTATCA
** *
65497850 TGGTAATTTTACAATACAAGAGTATTT
1 TGGTAATTTTACAA-ACTGGGGTATTT
*
65497877 TGGTAATTTTACAAATTGAGGGTATTT
1 TGGTAATTTTACAAACTG-GGGTATTT
* * *
65497904 TTGTAATTTTAAAAATTAGGGGTATTT
1 TGGTAATTTTACAAACT-GGGGTATTT
* * *
65497931 TGATAATTTTA-TAATTCGAGGGTATTT
1 TGGTAATTTTACAAACT-G-GGGTATTT
65497958 TGGTAATTTTACAAACTGGGGATATTT
1 TGGTAATTTTACAAACTGGGG-TATTT
65497985 TGGTAATTTTACAAACTG
1 TGGTAATTTTACAAACTG
65498003 AAGGTTTGTA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.08
27 95 0.88
28 4 0.04
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (26 bp):
TGGTAATTTTACAAACTGGGGTATTT
Found at i:65501055 original size:40 final size:40
Alignment explanation
Indices: 65500993--65501237 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
65500983 AAACCAAGTA
* * *
65500993 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
65501032 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65501072 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65501112 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
65501152 CCTTCGGGACTTAACCCGGA-ATTAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
65501192 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
65501232 CCTTCG
1 CCTTCG
65501238 TTATCATCCG
Statistics
Matches: 190, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 14 0.07
40 176 0.93
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65503238 original size:27 final size:26
Alignment explanation
Indices: 65503186--65503244 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
65503176 CCACTTATAT
*
65503186 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
65503212 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
65503239 ATATCT
1 ATATCT
65503245 GGAAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:65510800 original size:47 final size:47
Alignment explanation
Indices: 65510737--65511592 Score: 1381
Period size: 47 Copynumber: 18.2 Consensus size: 47
65510727 CCCTTCGGGA
* * * * *
65510737 CTTATCACATTTATACACTTTCACATCCATCACTTTGTCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
65510784 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
65510831 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65510878 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
65510925 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
65510972 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
65511019 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65511066 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
65511113 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
65511160 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65511207 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
65511254 CTTGTCACATATATACACTTTCGCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
65511301 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
65511348 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
65511395 CTTGTCACATATATACACTTTCGCATTCATCACATTGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
65511442 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65511489 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65511536 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
65511583 CTTATCACAT
1 CTTATCACAT
65511593 GTACATATCT
Statistics
Matches: 746, Mismatches: 62, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
47 745 1.00
48 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:65515430 original size:33 final size:32
Alignment explanation
Indices: 65515381--65515444 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
65515371 CTCGCTGCAA
* *
65515381 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
65515414 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
65515445 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:65515458 original size:27 final size:26
Alignment explanation
Indices: 65515406--65515465 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
65515396 ACATATATAT
*
65515406 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
65515432 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
65515459 ATATCTG
1 ATATCTG
65515466 GCAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:65517304 original size:15 final size:15
Alignment explanation
Indices: 65517284--65517321 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
65517274 CCCATACTCA
65517284 AGGCCCAATACTTCT
1 AGGCCCAATACTTCT
65517299 AGGCCCAATACTTCT
1 AGGCCCAATACTTCT
65517314 AGGCCCAA
1 AGGCCCAA
65517322 ATTCGAGGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.21
Consensus pattern (15 bp):
AGGCCCAATACTTCT
Found at i:65535533 original size:31 final size:31
Alignment explanation
Indices: 65535490--65535549 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
65535480 GGGTTAGGGA
65535490 CACGGGCATGTGTGACCACACGACCTACCTT
1 CACGGGCATGTGTGACCACACGACCTACCTT
*
65535521 CACGGGCGTGTGTGACCACACGACCTACC
1 CACGGGCATGTGTGACCACACGACCTACC
65535550 CACACGAGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.22, C:0.37, G:0.25, T:0.17
Consensus pattern (31 bp):
CACGGGCATGTGTGACCACACGACCTACCTT
Found at i:65537598 original size:48 final size:48
Alignment explanation
Indices: 65537524--65538029 Score: 214
Period size: 48 Copynumber: 10.9 Consensus size: 48
65537514 TAGGGTTATG
*
65537524 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT-GCAATCAATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGC-ATCAATA
* * * *
65537572 TGTGATCCCATGTAAGGCCATATTTGGGATATTGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
** * * * ** *
65537620 TGTGATTTCGTGTAAAACCATGTCCGGG--A---CA-TGGCATCGATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
* * * * * *
65537662 TGAGA-CATCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATA
1 TGTGATC-CCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
* * * * * *
65537710 TGTGA-CATCATGTAAGATCATATCTGGGATATAGCATTGGCATCTATA
1 TGTGATC-CCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
** * * * * * *
65537758 TGTGATTTCGTGTAATACCATGTCTAGGACATGGAATT-G-----ATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
* * * * * *
65537800 TGAGA-CATCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATA
1 TGTGATC-CCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
* * * * *
65537848 TGTGA-CATCATGTAAGACCATATCTGGGATATAGCATTGGCATCTATA
1 TGTGATC-CCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
** * * * * * *
65537896 TGTGATTTCGTGTAATACCATGTCTAGGACATGGAATT-G-----ATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
* * *** * *
65537938 TGAGA-CATCATGTAAGACCATGCCTGGGACATGGCATTGGCACCTATA
1 TGTGATC-CCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
* * * * *
65537986 TGTGATCCCAAGTAGGACTATATCTGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATC
65538030 TTACTATGTG
Statistics
Matches: 361, Mismatches: 72, Indels: 50
0.75 0.15 0.10
Matches are distributed among these distances:
42 99 0.27
43 4 0.01
44 1 0.00
46 1 0.00
47 4 0.01
48 249 0.69
49 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCAATA
Found at i:65537711 original size:90 final size:90
Alignment explanation
Indices: 65537580--65537991 Score: 350
Period size: 90 Copynumber: 4.5 Consensus size: 90
65537570 TATGTGATCC
* * * * * * * * * *
65537580 CATGTAAGGCCATATTTGGGATATTGCATTGGCATCTATATGTGATTTCGTGTAAAACCATGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATATCATGTAAGACCATGTCT
65537645 GGGACATGGCATCGATATGAGACAT
66 GGGACATGGCATCGATATGAGACAT
* * * *
65537670 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGACATCATGTAAGATCATATCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATATCATGTAAGACCATGTCT
* * **
65537735 GGGATATAGCATTGGCATCTATATGTGATTT
66 GGG----A-CA-TGGCATCGATATGAGACAT
* * * * * *
65537766 CGTGTAATACCATGTCTAGGACATGGAATT-G-----ATATGAGACATCATGTAAGACCATGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATATCATGTAAGACCATGTCT
*
65537825 GGGACATGGCATTGGCACCGATATGTGACAT
66 GGGACATGGCA-T-----CGATATGAGACAT
* * * * * * *
65537856 CATGTAAGACCATATCTGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATATCATGTAAGACCATGTCT
* * *
65537921 AGGACATGGAATTGATATGAGACAT
66 GGGACATGGCATCGATATGAGACAT
*
65537946 CATGTAAGACCATGCCTGGGACATGGCATTGGCACCTATATGTGAT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGAT
65537992 CCCAAGTAGG
Statistics
Matches: 255, Mismatches: 49, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
84 5 0.02
85 3 0.01
86 1 0.00
90 167 0.65
91 1 0.00
94 1 0.00
95 4 0.02
96 73 0.29
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (90 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATATCATGTAAGACCATGTCT
GGGACATGGCATCGATATGAGACAT
Found at i:65537757 original size:138 final size:138
Alignment explanation
Indices: 65537532--65538039 Score: 770
Period size: 138 Copynumber: 3.7 Consensus size: 138
65537522 TGTGTGATCC
* * * * *
65537532 CATGTAAGACCATGTTTGGGACATGGCATT-GCAATCAATATGTGATCCCATGTAAGGCCATATT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGC-ACCGATATGTGATCCCATGTAAGACCATATC
* * ** * *
65537596 TGGGATATTGCATTGGCATCTATATGTGATTTCGTGTAAAACCATGTCCGGGACATGGCATCGAT
65 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGAATTGAT
65537661 ATGAGACAT
130 ATGAGACAT
* *
65537670 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGA-CATCATGTAAGATCATATC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGATC-CCATGTAAGACCATATC
65537734 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGAATTGAT
65 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGAATTGAT
65537799 ATGAGACAT
130 ATGAGACAT
*
65537808 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGA-CATCATGTAAGACCATATC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGATC-CCATGTAAGACCATATC
65537872 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGAATTGAT
65 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGAATTGAT
65537937 ATGAGACAT
130 ATGAGACAT
* * * * *
65537946 CATGTAAGACCATGCCTGGGACATGGCATTGGCACCTATATGTGATCCCAAGTAGGACTATATCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGATCCCATGTAAGACCATATCT
*
65538011 GGGATATGGCATTGGCATCTTACTATGTG
66 GGGATATAGCATTGGCATC-TA-TATGTG
65538040 TATGAGATTT
Statistics
Matches: 344, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
137 1 0.00
138 332 0.97
139 5 0.01
140 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (138 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGATCCCATGTAAGACCATATCT
GGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGAATTGATA
TGAGACAT
Found at i:65539168 original size:83 final size:83
Alignment explanation
Indices: 65539029--65539201 Score: 337
Period size: 83 Copynumber: 2.1 Consensus size: 83
65539019 GTCGTGTGTG
*
65539029 ACACACGGTCTGCCCCATGGGCGTGTGATCCGGCCGTGTGTTCCTTGCACACTAATTAGGTAAAA
1 ACACACGGTCTGCCCCATGGGCGTGTGATCCGGCCGTGTATTCCTTGCACACTAATTAGGTAAAA
65539094 TAGAACACCCAGTAGTAA
66 TAGAACACCCAGTAGTAA
65539112 ACACACGGTCTGCCCCATGGGCGTGTGATCCGGCCGTGTATTCCTTGCACACTAATTAGGTAAAA
1 ACACACGGTCTGCCCCATGGGCGTGTGATCCGGCCGTGTATTCCTTGCACACTAATTAGGTAAAA
65539177 TAGAACACCCAGTAGTAA
66 TAGAACACCCAGTAGTAA
65539195 ACACACG
1 ACACACG
65539202 AGTAGAGACA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 89 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (83 bp):
ACACACGGTCTGCCCCATGGGCGTGTGATCCGGCCGTGTATTCCTTGCACACTAATTAGGTAAAA
TAGAACACCCAGTAGTAA
Found at i:65545922 original size:30 final size:30
Alignment explanation
Indices: 65545887--65545944 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
65545877 CCCGAAGAGA
65545887 TAGTAGAATGAGGATGATATTCTCTAAAGG
1 TAGTAGAATGAGGATGATATTCTCTAAAGG
65545917 TAGTAGAATGAGGATGATATTCTCTAAA
1 TAGTAGAATGAGGATGATATTCTCTAAA
65545945 TTTTTTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (30 bp):
TAGTAGAATGAGGATGATATTCTCTAAAGG
Found at i:65548632 original size:54 final size:55
Alignment explanation
Indices: 65548453--65548632 Score: 150
Period size: 55 Copynumber: 3.3 Consensus size: 55
65548443 TCTTGATATA
* * * * * *
65548453 GTCTTACGTGGTATCCCTGCCTTAT--GAACTCACCATTGCCATGCCTTGGCATG
1 GTCTTACATGGTATCCTTGCCTTATCAAAACTTAGCAATGCCATGCCTTGGCATG
* * * * ** * * *
65548506 GTCTTTCATGGGATCTTTGCCTTATCATAGTTTATCAATGCCATGTCTTGACATG
1 GTCTTACATGGTATCCTTGCCTTATCAAAACTTAGCAATGCCATGCCTTGGCATG
* * * **
65548561 GTCTTACATGATTTCCTTGCCTTGT-AAAACTTAGCAATTTCATGCCTTGGCATG
1 GTCTTACATGGTATCCTTGCCTTATCAAAACTTAGCAATGCCATGCCTTGGCATG
*
65548615 GTCTTACTTGGTATCCTT
1 GTCTTACATGGTATCCTT
65548633 AAACCCTAAT
Statistics
Matches: 95, Mismatches: 30, Indels: 3
0.74 0.23 0.02
Matches are distributed among these distances:
53 20 0.21
54 36 0.38
55 39 0.41
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (55 bp):
GTCTTACATGGTATCCTTGCCTTATCAAAACTTAGCAATGCCATGCCTTGGCATG
Found at i:65554432 original size:21 final size:21
Alignment explanation
Indices: 65554403--65554442 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
65554393 AATGTTTGCA
65554403 TGAAATTGATATTCGACCAAC
1 TGAAATTGATATTCGACCAAC
*
65554424 TGAAGTTGATATTCGACCA
1 TGAAATTGATATTCGACCA
65554443 GATATGACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
TGAAATTGATATTCGACCAAC
Found at i:65555941 original size:48 final size:48
Alignment explanation
Indices: 65555865--65556232 Score: 321
Period size: 48 Copynumber: 7.9 Consensus size: 48
65555855 TAGGGTTATG
**
65555865 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTTCCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * *
65555913 TGTGATCCGATGTAAGACCATATATGGGATATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * *
65555961 TGTGATTTCGTGTAAGACCATGCCTGGGACAT-G-A----CATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
65556003 TGAGA-CATCATGTAAGACCATGTCTGGGAAATGGCATTGGCATCGATA
1 TGTGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * * * *
65556051 TATGATCCCATATAAGTCAATATTTGGGACATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** ** * *
65556099 TGTGATTTCGCGTAAGACAATGTCTGGGACATGGCA-TCG-AT--ATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* ** *
65556143 AGACAT--CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*** *
65556189 TGTGATCCCATGTAAGACCACACCTGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
65556233 TTACTATGTT
Statistics
Matches: 249, Mismatches: 57, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
42 58 0.23
43 3 0.01
44 8 0.03
46 9 0.04
47 3 0.01
48 167 0.67
49 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:65556098 original size:138 final size:138
Alignment explanation
Indices: 65555873--65556233 Score: 551
Period size: 138 Copynumber: 2.6 Consensus size: 138
65555863 TGTGTGATCC
** *
65555873 CATGTAAGACCATGTCTGGGACATGGCATTTCCATCGATATGTGATCCGATGTAAGACCATATAT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATAT
* *
65555938 GGGATATGGCATTGGCATCTATATGTGATTTCGTGTAAGACCATGCCTGGGACATGACATCGATA
66 GGGATATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGCCTGGGACATGACATCGATA
*
65556003 TGAGACAT
131 TAAGACAT
* * * * * *
65556011 CATGTAAGACCATGTCTGGGAAATGGCATTGGCATCGATATATGATCCCATATAAGTCAATATTT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATAT
* * *
65556076 GGGACATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGTCTGGGACATGGCATCGATA
66 GGGATATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGCCTGGGACATGACATCGATA
65556141 TAAGACAT
131 TAAGACAT
* * **
65556149 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGATCCCATGTAAGACCACACCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATAT
65556214 GGGATATGGCATTGGCATCT
66 GGGATATGGCATTGGCATCT
65556234 TACTATGTTT
Statistics
Matches: 198, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 198 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (138 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATAT
GGGATATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGCCTGGGACATGACATCGATA
TAAGACAT
Found at i:65559351 original size:43 final size:43
Alignment explanation
Indices: 65559304--65559386 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
65559294 ATTACCGAGA
* *
65559304 TGTGATTACATATAAGACCATGTCCGGAACATTGGCATTGTAT
1 TGTGATTACATATAAAACCAAGTCCGGAACATTGGCATTGTAT
* * *
65559347 TGTGATTACATGTAAAACCAAGTCTGGGACATTGGCATTG
1 TGTGATTACATATAAAACCAAGTCCGGAACATTGGCATTG
65559387 ATATGTGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
TGTGATTACATATAAAACCAAGTCCGGAACATTGGCATTGTAT
Found at i:65561641 original size:220 final size:220
Alignment explanation
Indices: 65561259--65561699 Score: 873
Period size: 220 Copynumber: 2.0 Consensus size: 220
65561249 ACCCCCACAT
65561259 GTTCCTTAACAAATCCCCGTTGTTCCTCAAACTATAGATCAGATACGATTGAACAAGCCGCCAGT
1 GTTCCTTAACAAATCCCCGTTGTTCCTCAAACTATAGATCAGATACGATTGAACAAGCCGCCAGT
65561324 GGATAAGATTCATAAACATGGGGCTGAGGAGTTCTGGGCTACTGTTGAGGATGATGTTGAGAGAG
66 GGATAAGATTCATAAACATGGGGCTGAGGAGTTCTGGGCTACTGTTGAGGATGATGTTGAGAGAG
65561389 CTGAGTTCTAGCTTGAGAACACAATCCGAGTATTCGATGAATTGTCTTGTACTTCTGACGAGTGT
131 CTGAGTTCTAGCTTGAGAACACAATCCGAGTATTCGATGAATTGTCTTGTACTTCTGACGAGTGT
65561454 ATCAAATGTGTTGTGTCTTTGCTGA
196 ATCAAATGTGTTGTGTCTTTGCTGA
65561479 GTTCCTTAACAAATCCCCGTTGTTCCTCAAACTATAGATCAGATACGATTGAACAAGCCGCCAGT
1 GTTCCTTAACAAATCCCCGTTGTTCCTCAAACTATAGATCAGATACGATTGAACAAGCCGCCAGT
*
65561544 GGATAAGATTCATAAACATGGGGCTGAGGAGTTTTGGGCTACTGTTGAGGATGATGTTGAGAGAG
66 GGATAAGATTCATAAACATGGGGCTGAGGAGTTCTGGGCTACTGTTGAGGATGATGTTGAGAGAG
65561609 CTGAGTTCTAGCTTGAGAACACAATCCGAGTATTCGATGAATTGTCTTGTACTTCTGACGAGTGT
131 CTGAGTTCTAGCTTGAGAACACAATCCGAGTATTCGATGAATTGTCTTGTACTTCTGACGAGTGT
65561674 ATCAAATGTGTTGTGTCTTTGCTGA
196 ATCAAATGTGTTGTGTCTTTGCTGA
65561699 G
1 G
65561700 AGATAATGAG
Statistics
Matches: 220, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
220 220 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (220 bp):
GTTCCTTAACAAATCCCCGTTGTTCCTCAAACTATAGATCAGATACGATTGAACAAGCCGCCAGT
GGATAAGATTCATAAACATGGGGCTGAGGAGTTCTGGGCTACTGTTGAGGATGATGTTGAGAGAG
CTGAGTTCTAGCTTGAGAACACAATCCGAGTATTCGATGAATTGTCTTGTACTTCTGACGAGTGT
ATCAAATGTGTTGTGTCTTTGCTGA
Found at i:65563472 original size:31 final size:31
Alignment explanation
Indices: 65563430--65563504 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
65563420 ACATATACTA
*
65563430 GGCCAAAGCCTTTCCATAAATCATACCACTG
1 GGCCGAAGCCTTTCCATAAATCATACCACTG
* *
65563461 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTCCATAAATCATACCACTG
65563492 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
65563505 ATCGTAAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (31 bp):
GGCCGAAGCCTTTCCATAAATCATACCACTG
Found at i:65563588 original size:42 final size:42
Alignment explanation
Indices: 65563528--65563619 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
65563518 TGGCCCATAG
*
65563528 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
65563570 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
65563612 GCCCATTT
1 GCCCATTT
65563620 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:65563782 original size:25 final size:25
Alignment explanation
Indices: 65563754--65563813 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 25
65563744 CTGGAGGCCT
65563754 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
65563779 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTAATAAACTGGGGCAAA
65563805 AGCCCTTTT
1 AGCCCTTTT
65563814 CGGTAAACAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 1 0.03
25 14 0.44
26 17 0.53
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:65563803 original size:26 final size:26
Alignment explanation
Indices: 65563767--65563862 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 26
65563757 CTCTTTTAAT
* *
65563767 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
65563793 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
* *
65563819 AACAGAGGC-AAAGCCCTTTTCGGT-
1 AACTGGGGCAAAAGCCCTTTTCGGTA
*
65563843 AACTGGGG-TAAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
65563863 AGCACTTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
24 17 0.27
25 15 0.24
26 31 0.49
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGGTA
Found at i:65564702 original size:27 final size:26
Alignment explanation
Indices: 65564672--65564749 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
65564662 GGGCATATTC
65564672 GTCATTTTACCGTACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
65564699 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
65564726 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-CAGGGGTATT
65564750 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 5 0.12
27 35 0.81
28 3 0.07
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:65564820 original size:27 final size:27
Alignment explanation
Indices: 65564790--65564875 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
65564780 GTAAATCTAC
*
65564790 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
65564817 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
65564843 AGAAAGTCAAGGGTATTTCTAGAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
65564873 AAA
1 AAA
65564876 TCAGGGATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 23 0.46
28 6 0.12
29 19 0.38
30 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:65564895 original size:27 final size:26
Alignment explanation
Indices: 65564873--65564975 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 26
65564863 AGAATTTTGT
65564873 AAATCAGGGATATTTTGGTAATTTTAC
1 AAATCAGGG-TATTTTGGTAATTTTAC
* * *
65564900 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAA-TCAGGGTATTTTGGTAATTTTAC
* *
65564927 AAACCAGTTGTATTTTGGTAATTTTAC
1 AAATCAG-GGTATTTTGGTAATTTTAC
*
65564954 AACT-AGGGGTATTTTGGTAATT
1 AAATCA-GGGTATTTTGGTAATT
65564976 CTACCCTACA
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 17 0.27
27 40 0.65
28 5 0.08
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (26 bp):
AAATCAGGGTATTTTGGTAATTTTAC
Found at i:65565043 original size:27 final size:26
Alignment explanation
Indices: 65565009--65565098 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
65564999 AATTTCCCAG
* *
65565009 TCGAGGGTAAGACGATAATTTTATAAA
1 TCGAGGGTAAAAC-ATAATTCTATAAA
* *
65565036 TCGAGGGTAAAACAACAATTCTGTAAA
1 TCGAGGGTAAAAC-ATAATTCTATAAA
*
65565063 TCAAGGGTAAAACAGTAATTCTATAAA
1 TCGAGGGTAAAACA-TAATTCTATAAA
*
65565090 TTGAGGGTA
1 TCGAGGGTA
65565099 CTTTGGTAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (26 bp):
TCGAGGGTAAAACATAATTCTATAAA
Found at i:65566615 original size:23 final size:22
Alignment explanation
Indices: 65566562--65566632 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 22
65566552 AACTTATTGA
*
65566562 TTTCAGCTCATTTGAGCTTACTG
1 TTTCAGCTCA-TAGAGCTTACTG
*
65566585 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAGCTC-ATAGAGCTTACTG
65566607 TTTCAGCTCAATAGAGCTTACTG
1 TTTCAGCTC-ATAGAGCTTACTG
65566630 TTT
1 TTT
65566633 ATCAATTCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.43
23 24 0.57
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (22 bp):
TTTCAGCTCATAGAGCTTACTG
Found at i:65578483 original size:22 final size:20
Alignment explanation
Indices: 65578441--65578491 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
65578431 GTGTAATTCT
* *
65578441 ATCAAAAATAACCAAATTTA
1 ATCAAAATTAACCAAAATTA
65578461 ATCAAAATTAACTACAAAATTA
1 ATCAAAATTAAC--CAAAATTA
*
65578483 ATTAAAATT
1 ATCAAAATT
65578492 CATAATGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (20 bp):
ATCAAAATTAACCAAAATTA
Found at i:65583599 original size:14 final size:13
Alignment explanation
Indices: 65583571--65583603 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
65583561 TAAGTTTGTA
65583571 ATGG-AATGAATT
1 ATGGTAATGAATT
65583583 ATGGTAATGAGATT
1 ATGGTAATGA-ATT
65583597 ATGGTAA
1 ATGGTAA
65583604 ATTACATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 5 0.26
14 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (13 bp):
ATGGTAATGAATT
Found at i:65585834 original size:42 final size:42
Alignment explanation
Indices: 65585772--65585924 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
65585762 TAAGATTATG
* * * *
65585772 TGTAAAACCATATCTGGGATATGGCATCTATATGAGACTTCG
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
* * **
65585814 TGTAAGTCCATATCTAGGATATAGCATCGATATGAGACTTTT
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
* * * *
65585856 TGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TCCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGAGACTTCA
* *
65585898 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
65585925 TGGTAAGGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
41 6 0.07
42 71 0.78
43 14 0.15
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
Found at i:65591109 original size:26 final size:26
Alignment explanation
Indices: 65591080--65591130 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
65591070 CTTTGCCACA
* *
65591080 ATTACTATTTCTAGCTGCTATGCTGC
1 ATTACTATTACTAGCAGCTATGCTGC
* *
65591106 ATTATTATTACTAGCAGCTTTGCTG
1 ATTACTATTACTAGCAGCTATGCTG
65591131 TGATATTGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.43
Consensus pattern (26 bp):
ATTACTATTACTAGCAGCTATGCTGC
Found at i:65596649 original size:46 final size:47
Alignment explanation
Indices: 65596543--65596654 Score: 136
Period size: 50 Copynumber: 2.3 Consensus size: 47
65596533 TGTCTTCGAC
** *
65596543 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT
1 ATGGACTTACATGGCTTATTCCTGTCTCCAAAGCC--A-ATATATATAAT
* * *
65596593 ATGGGCTTACATGGCTTATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTTATTCCTGTCTCCAAAGCCAATATATATAAT
65596639 ATGGACTTACATGGCT
1 ATGGACTTACATGGCT
65596655 CATTTTTGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 24 0.44
50 31 0.56
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTTATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:65600974 original size:46 final size:47
Alignment explanation
Indices: 65600870--65600983 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 47
65600860 TGTCTTCGAC
** * *
65600870 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
65600918 ATGGTCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
65600964 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
65600984 TATGTCTTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 28 0.48
48 30 0.52
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:65600990 original size:46 final size:47
Alignment explanation
Indices: 65600870--65600990 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 47
65600860 TGTCTTCGAC
** * * *
65600870 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCA-ATATATATAAT
* * * *
65600918 ATGGTCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCAATATATATAAT
*
65600964 ATGGACTTACATGGCTCATTTATGTCT
1 ATGGACTTACATGGCTCATTCATGTCT
65600991 TGTCCTGTCC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCAATATATATAAT
Found at i:65605238 original size:46 final size:48
Alignment explanation
Indices: 65605134--65605247 Score: 142
Period size: 48 Copynumber: 2.4 Consensus size: 48
65605124 TGTCTTCAAC
** * * *
65605134 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCATATATATATAAT
* * *
65605182 ATGGGCTTACATGGCTCATTCATGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCATATATATATAAT
65605228 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
65605248 TCTGTCCTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 22 0.39
47 1 0.02
48 34 0.60
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCATATATATATAAT
Found at i:65609534 original size:45 final size:47
Alignment explanation
Indices: 65609431--65609549 Score: 145
Period size: 45 Copynumber: 2.6 Consensus size: 47
65609421 ATGTCTTCAC
** * *
65609431 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* *
65609479 ATGG-CTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATA-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
65609523 ATGGACTTACATGGCTCATTTCTGTCT
1 ATGGACTTACATGGCTCATTCCTGTCT
65609550 GTCTGTCCTG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 7 0.11
45 26 0.41
47 26 0.41
48 4 0.06
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:65614169 original size:40 final size:40
Alignment explanation
Indices: 65613957--65614162 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
65613947 AACCCAAGTA
* *
65613957 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
65613996 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
65614036 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
65614076 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
65614116 CTTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
65614156 CCTTCGG
1 CCTTCGG
65614163 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.08
40 141 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:65615596 original size:13 final size:13
Alignment explanation
Indices: 65615580--65615607 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
65615570 TTTATTATTT
65615580 TTAACACAAAATA
1 TTAACACAAAATA
65615593 TTAACACAAAATA
1 TTAACACAAAATA
65615606 TT
1 TT
65615608 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:65617545 original size:27 final size:27
Alignment explanation
Indices: 65617515--65617577 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
65617505 CCAAAATAGC
* *
65617515 TAAAATGACTATAATGCCCCTATAGGG
1 TAAAATGACCATAATACCCCTATAGGG
* * *
65617542 TAAAATGACCGTAATACCCCTGTATGG
1 TAAAATGACCATAATACCCCTATAGGG
65617569 TAAAATGAC
1 TAAAATGAC
65617578 GATTATTCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
TAAAATGACCATAATACCCCTATAGGG
Found at i:65617762 original size:27 final size:26
Alignment explanation
Indices: 65617712--65617762 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
65617702 ATGGAGGAAG
* *
65617712 TACTGTACTGGTGACTATGTCACATT
1 TACTGTACTGGTGACTACGCCACATT
*
65617738 TACTGTTACTGGTGGCTACGCCACA
1 TACTG-TACTGGTGACTACGCCACA
65617763 AATACTTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (26 bp):
TACTGTACTGGTGACTACGCCACATT
Found at i:65617768 original size:27 final size:26
Alignment explanation
Indices: 65617712--65617768 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
65617702 ATGGAGGAAG
* * **
65617712 TACTGTACTGGTGACTATGTCACATT
1 TACTGTACTGGTGACTACGCCACAAA
*
65617738 TACTGTTACTGGTGGCTACGCCACAAA
1 TACTG-TACTGGTGACTACGCCACAAA
65617765 TACT
1 TACT
65617769 TTGCCACATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
TACTGTACTGGTGACTACGCCACAAA
Found at i:65617982 original size:28 final size:28
Alignment explanation
Indices: 65617951--65618034 Score: 69
Period size: 33 Copynumber: 2.8 Consensus size: 28
65617941 TGTTGTATTG
*
65617951 GGCTTAGGCCCACACTGTTACTGTATAA
1 GGCTTAGGCCCACACTGTTACTGAATAA
* * *
65617979 GGCTAAGGCCTAAACTGTACTGTTACTGAATAG
1 GGCTTAGGCC--CAC---ACTGTTACTGAATAA
* *
65618012 GGCTTAGGCCCAGACTATTACTG
1 GGCTTAGGCCCACACTGTTACTG
65618035 CACGCATTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
28 18 0.42
30 2 0.05
31 1 0.02
33 22 0.51
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (28 bp):
GGCTTAGGCCCACACTGTTACTGAATAA
Found at i:65621521 original size:12 final size:12
Alignment explanation
Indices: 65621504--65621533 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
65621494 TGTTGTTGTC
65621504 TTCTTCATCATG
1 TTCTTCATCATG
65621516 TTCTTCATCATG
1 TTCTTCATCATG
*
65621528 ATCTTC
1 TTCTTC
65621534 CCTACCATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.27, G:0.07, T:0.50
Consensus pattern (12 bp):
TTCTTCATCATG
Found at i:65629023 original size:24 final size:21
Alignment explanation
Indices: 65628938--65629029 Score: 89
Period size: 21 Copynumber: 4.3 Consensus size: 21
65628928 ATATTTTACT
**
65628938 TTCTGTTCAGCTCTTACAAGC
1 TTCTGTTCAGCTCTTATGAGC
* *
65628959 TTTTGTTCAACTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
*
65628980 TTCTGTTCAGCT-TT-CGAGC
1 TTCTGTTCAGCTCTTATGAGC
65628999 TTCTGTTGGCCAGCTCTTATGAGC
1 TTCTGTT---CAGCTCTTATGAGC
*
65629023 TTTTGTT
1 TTCTGTT
65629030 AACGATGTAC
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.19
20 2 0.04
21 27 0.47
22 5 0.09
23 2 0.04
24 10 0.18
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATGAGC
Done.