Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 195 of 373
Found at i:65631334 original size:46 final size:45
Alignment explanation
Indices: 65631198--65631464 Score: 211
Period size: 46 Copynumber: 5.7 Consensus size: 45
65631188 AGGATATAAT
* *
65631198 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCA-CGTATCCGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATC-TAT---A
* * * *
65631248 GTCGATGCCATGTCCCAGACATGGTCTTATACT-G-ACACATCATATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATC-TATA
* * **
65631294 GTCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTATA
* * *
65631339 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA-A
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCT-ATA
* * *
65631385 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTATA
65631434 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
65631465 AGCACACAAA
Statistics
Matches: 179, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 63 0.35
47 27 0.15
48 28 0.16
49 5 0.03
50 31 0.17
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTATA
Found at i:65631413 original size:94 final size:92
Alignment explanation
Indices: 65631195--65631472 Score: 286
Period size: 94 Copynumber: 3.0 Consensus size: 92
65631185 CATAGGATAT
* * * *
65631195 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATC-CGTGTCGATGCCAT
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-AC--ATCTCGAGGCGATG-CAT
*
65631259 GTCCCAGACATGGTCTTATACT-G-ACACATC
62 GTCCCAGACAT-GTCTTACACTAGCACACATC
*
65631289 ATATAGTCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGAGGCTGATGCATG
1 A-AT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACATCTCGAGGC-GATGCATG
* * *
65631351 TCCCAGACATGTCTTACACTAGCTCTCGTCTC
63 TCCCAGACATGTCTTACACTAGCACAC--ATC
*
65631383 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT--ATGGCCGATGCATG
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACAT-CTCGA-GG-CGATGCATG
65631445 TCCCAGACATGTCTTACACTAGCACACA
63 TCCCAGACATGTCTTACACTAGCACACA
65631473 AATGACCCGA
Statistics
Matches: 156, Mismatches: 14, Indels: 30
0.78 0.07 0.15
Matches are distributed among these distances:
90 12 0.08
91 19 0.12
92 14 0.09
93 18 0.12
94 69 0.44
95 18 0.12
96 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACATCTCGAGGCGATGCATGTCC
CAGACATGTCTTACACTAGCACACATC
Found at i:65631459 original size:140 final size:141
Alignment explanation
Indices: 65631201--65631464 Score: 358
Period size: 140 Copynumber: 1.9 Consensus size: 141
65631191 ATATAATGCC
** * *
65631201 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCCGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCT-ACGTATCAATGCCGATGCCATGTCCCAA
* *
65631266 ACATGGTCTTATACTGACACATCATATAGTCGATGCATGTCCCAAACATGTCTTACACTGGCTTA
65 ACATGGTCTTACACTGACACATCATATAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTA
65631331 CATCTCGAGGCT
130 CATCTCGAGGCT
*
65631343 GATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCT-CGTCTCAATGCCGATGCCATGTCCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTACGTATCAATGCCGATGCCATGTCCCAA
* * *
65631404 ACATGGTCTTACACTGGCTC-TCATAATATGGCCGATGCATGTCCCAGACATGTCTTACACT
65 ACATGGTCTTACACTGACACATCAT-ATA--GCCGATGCATGTCCCAAACATGTCTTACACT
65631465 AGCACACAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
137 4 0.04
138 42 0.39
139 1 0.01
140 43 0.40
141 14 0.13
142 4 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTACGTATCAATGCCGATGCCATGTCCCAAA
CATGGTCTTACACTGACACATCATATAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAC
ATCTCGAGGCT
Found at i:65638779 original size:19 final size:19
Alignment explanation
Indices: 65638755--65638791 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
65638745 GGTCAAAACT
65638755 CCAATTGCTGACCAAGTCG
1 CCAATTGCTGACCAAGTCG
*
65638774 CCAATTTCTGACCAAGTC
1 CCAATTGCTGACCAAGTC
65638792 TCCCTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (19 bp):
CCAATTGCTGACCAAGTCG
Found at i:65639291 original size:27 final size:27
Alignment explanation
Indices: 65639236--65639295 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
65639226 ATACTAAATA
**
65639236 ATAAAATATATAATGAAATTATGTTAT
1 ATAAAATATATAATGAAATTAAATTAT
*
65639263 ATAAAATA-ATAATTAAATTAAATTAAT
1 ATAAAATATATAATGAAATTAAATT-AT
65639290 ATAAAA
1 ATAAAA
65639296 AGTAAATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 13 0.45
27 16 0.55
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (27 bp):
ATAAAATATATAATGAAATTAAATTAT
Found at i:65645100 original size:21 final size:21
Alignment explanation
Indices: 65645076--65645122 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
65645066 CTCGCCTCTA
*
65645076 CCTCCCTCGCTGCTGCCGCTG
1 CCTCCCTCGCTACTGCCGCTG
* *
65645097 CCTCTCTCGCTACTGCCGTTG
1 CCTCCCTCGCTACTGCCGCTG
65645118 CCTCC
1 CCTCC
65645123 TTATCTGCTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.51, G:0.19, T:0.28
Consensus pattern (21 bp):
CCTCCCTCGCTACTGCCGCTG
Found at i:65645572 original size:13 final size:14
Alignment explanation
Indices: 65645546--65645574 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
65645536 ACTAACGATG
65645546 AATTAAATCATTAT
1 AATTAAATCATTAT
65645560 AATTAAA-CATTAT
1 AATTAAATCATTAT
65645573 AA
1 AA
65645575 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAATCATTAT
Found at i:65650619 original size:9 final size:9
Alignment explanation
Indices: 65650605--65650701 Score: 69
Period size: 9 Copynumber: 11.0 Consensus size: 9
65650595 TAACTATAAT
65650605 TAAGTTATG
1 TAAGTTATG
65650614 TAAGTTATG
1 TAAGTTATG
* * *
65650623 ATATGATATA
1 -TAAGTTATG
*
65650633 T-ATTTATG
1 TAAGTTATG
65650641 T-A-TTATG
1 TAAGTTATG
65650648 TAAGTTATG
1 TAAGTTATG
*
65650657 TAAATTATG
1 TAAGTTATG
65650666 TAAGTTATCCG
1 TAAGTTAT--G
65650677 -AA-TTATG
1 TAAGTTATG
*
65650684 TAAATTATG
1 TAAGTTATG
*
65650693 TAAGATATG
1 TAAGTTATG
65650702 ATATATATCT
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
7 7 0.10
8 8 0.11
9 46 0.66
10 8 0.11
11 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:65650945 original size:16 final size:16
Alignment explanation
Indices: 65650915--65650980 Score: 79
Period size: 12 Copynumber: 4.4 Consensus size: 16
65650905 GAGATTATGG
65650915 AAAATCACATGGGAAAA
1 AAAATCACAT-GGAAAA
65650932 AAAATCACATGG----
1 AAAATCACATGGAAAA
65650944 AAAATCACATGGAAAA
1 AAAATCACATGGAAAA
65650960 AAAATCACAT-GAAAA
1 AAAATCACATGGAAAA
*
65650975 ATAATC
1 AAAATC
65650981 TAAGGATAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
12 12 0.27
15 10 0.23
16 12 0.27
17 10 0.23
ACGTcount: A:0.59, C:0.14, G:0.12, T:0.15
Consensus pattern (16 bp):
AAAATCACATGGAAAA
Found at i:65650966 original size:28 final size:29
Alignment explanation
Indices: 65650911--65650976 Score: 116
Period size: 28 Copynumber: 2.3 Consensus size: 29
65650901 TCTTGAGATT
65650911 ATGGAAAATCACATGGGAAAAAAAATCAC
1 ATGGAAAATCACATGGGAAAAAAAATCAC
65650940 ATGGAAAATCACAT-GGAAAAAAAATCAC
1 ATGGAAAATCACATGGGAAAAAAAATCAC
*
65650968 ATGAAAAAT
1 ATGGAAAAT
65650977 AATCTAAGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 22 0.61
29 14 0.39
ACGTcount: A:0.58, C:0.12, G:0.15, T:0.15
Consensus pattern (29 bp):
ATGGAAAATCACATGGGAAAAAAAATCAC
Found at i:65652352 original size:26 final size:26
Alignment explanation
Indices: 65652323--65652430 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
65652313 TGGTACAAAT
65652323 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
65652349 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65652375 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
65652401 TGATAATTGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65652427 TGAT
1 TGAT
65652431 GAGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65654178 original size:21 final size:21
Alignment explanation
Indices: 65654152--65654194 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
65654142 ATTTCCCACA
65654152 TGGAGTGTA-TGGTTGGTAGGG
1 TGGAGTGTAGTGGTTGGT-GGG
65654173 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGTTGGTGGG
65654194 T
1 T
65654195 TAGGTAGTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.35
Consensus pattern (21 bp):
TGGAGTGTAGTGGTTGGTGGG
Found at i:65658163 original size:26 final size:26
Alignment explanation
Indices: 65658134--65658241 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
65658124 TGGTACAAAT
65658134 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
65658160 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65658186 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65658212 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65658238 TGAT
1 TGAT
65658242 GAGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65662180 original size:37 final size:37
Alignment explanation
Indices: 65662121--65662229 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
65662111 AGCTCAGACG
* *
65662121 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
65662158 AAATCTCCACACCTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
65662195 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
65662230 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:65662529 original size:98 final size:98
Alignment explanation
Indices: 65662379--65662658 Score: 517
Period size: 98 Copynumber: 2.9 Consensus size: 98
65662369 CATCGCCTAC
*
65662379 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCC
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCC
65662443 ATTCGGCTTTACCACATATACATATCTCATATAT
65 ATTCGGCTTTACCACATATACATATCTCATATAT
65662477 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
65662542 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
65662575 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
65662640 TTCGGCTTTACCACATATA
66 TTCGGCTTTACCACATATA
65662659 TGCATGTTCA
Statistics
Matches: 178, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
98 177 0.99
99 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:65662663 original size:50 final size:48
Alignment explanation
Indices: 65662376--65662658 Score: 444
Period size: 48 Copynumber: 5.8 Consensus size: 48
65662366 GCACATCGCC
*
65662376 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
65662424 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
65662474 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
65662522 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
65662572 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
65662620 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
65662659 TGCATGTTCA
Statistics
Matches: 218, Mismatches: 9, Indels: 16
0.90 0.04 0.07
Matches are distributed among these distances:
48 127 0.58
49 4 0.02
50 87 0.40
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:65662700 original size:22 final size:22
Alignment explanation
Indices: 65662674--65662792 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
65662664 GTTCATATTC
65662674 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
65662696 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
65662720 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
65662743 ATCACATATATG-CATCTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
65662767 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
65662790 ATC
1 ATC
65662793 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:65662707 original size:47 final size:47
Alignment explanation
Indices: 65662580--65662821 Score: 283
Period size: 47 Copynumber: 5.1 Consensus size: 47
65662570 TATATATATT
* * * *
65662580 TCACATTGACCATTCGGCTTTA-C-CACATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATAT-TC--ACAT-TCA
* * * * *
65662628 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
* **
65662675 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
*
65662722 TCACATTGGCCATTCGGCCTTATCACATATATGCATCTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
* * *
65662769 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
65662816 TCACAT
1 TCACAT
65662822 AAAATCCTAA
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
46 1 0.01
47 137 0.80
48 20 0.12
49 3 0.02
50 11 0.06
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
Found at i:65662752 original size:94 final size:93
Alignment explanation
Indices: 65662482--65662821 Score: 305
Period size: 94 Copynumber: 3.6 Consensus size: 93
65662472 TATATATATT
* * * * *
65662482 TCACATTGACCATTCGGCTTTA-CCACATATACATATCTCATACATAT-TTCACACTAGCCATTC
1 TCACATTGGCCATTCGGCCTTATCCACATATGCATA-CTC--ACAT-TCATCACATTAGCCATTC
* * * *
65662545 GGCTTTACCACATATA--CATATCTCATATATATA
62 GGCCTTACCACATATATGCATCT-TCACAT-T-CA
* * *
65662578 TTTCACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCAT
1 --TCACATTGGCCATTCGGCCTTATCCACATATGCATA-CTC--ACAT-TCATCACATTAGCCAT
* * *
65662641 TCGGCTTTACCACATATATGCATGTTCATATTCA
60 TCGGCCTTACCACATATATGCATCTTCACATTCA
* *
65662675 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACATTAGCCATTCGGC
*
65662740 CTTATCACATATATGCATCTTCACATTCA
65 CTTACCACATATATGCATCTTCACATTCA
* * * *
65662769 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACAT
65662822 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 19, Indels: 14
0.87 0.08 0.06
Matches are distributed among these distances:
93 1 0.00
94 93 0.43
95 20 0.09
96 4 0.02
97 12 0.06
98 78 0.36
99 6 0.03
100 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (93 bp):
TCACATTGGCCATTCGGCCTTATCCACATATGCATACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATCTTCACATTCA
Found at i:65665640 original size:18 final size:18
Alignment explanation
Indices: 65665617--65665657 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
65665607 AAAGGAAACT
65665617 GATGCGAAAGCCATTACA
1 GATGCGAAAGCCATTACA
65665635 GATGCGAAAGCCATTACA
1 GATGCGAAAGCCATTACA
65665653 GATGC
1 GATGC
65665658 AACAGGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (18 bp):
GATGCGAAAGCCATTACA
Found at i:65666780 original size:18 final size:18
Alignment explanation
Indices: 65666757--65666799 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
65666747 AATCTTCTCT
65666757 ATAACATACCCATATGAA
1 ATAACATACCCATATGAA
65666775 ATAACATACCCATATGAA
1 ATAACATACCCATATGAA
65666793 ATAACAT
1 ATAACAT
65666800 GAAGAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (18 bp):
ATAACATACCCATATGAA
Found at i:65667459 original size:40 final size:40
Alignment explanation
Indices: 65667379--65667469 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
65667369 CAATTAAACA
* ** *
65667379 TTTAGTGGCG-TTTTACAAAAGCGTCGCTAAATCTCAATT
1 TTTAGCGGCGTTTTTACAAAAGCACCACTAAATCTCAATT
* * *
65667418 TTTTGCGGCGTTTTTACAAAAGCACCACTAATTCTCTATT
1 TTTAGCGGCGTTTTTACAAAAGCACCACTAAATCTCAATT
65667458 TTTAGCGGCGTT
1 TTTAGCGGCGTT
65667470 ATGAAAACAC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 8 0.19
40 35 0.81
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTACAAAAGCACCACTAAATCTCAATT
Found at i:65668158 original size:5 final size:5
Alignment explanation
Indices: 65668150--65668174 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
65668140 AAAAATACTA
65668150 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
65668175 TAAAATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:65668804 original size:21 final size:21
Alignment explanation
Indices: 65668780--65668825 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
65668770 TGGATTAGTG
* * *
65668780 TTTATGGTTTATGTTTTAAAA
1 TTTAGGGTTTAGGGTTTAAAA
*
65668801 TTTAGGGTTTAGGGTTTAGAA
1 TTTAGGGTTTAGGGTTTAAAA
65668822 TTTA
1 TTTA
65668826 ATGTTTAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAAAA
Found at i:65669224 original size:41 final size:41
Alignment explanation
Indices: 65669139--65669598 Score: 508
Period size: 41 Copynumber: 11.3 Consensus size: 41
65669129 TTTTGCGGCA
*
65669139 TTTGGACCAAAAACGCCGCTATTAATCA-TTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * *
65669179 TTTGGACCAAAAACACCGCTATTCATAAGTTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * *
65669220 TTTGGAACAAAAATGCCGCTACTGATCAGTTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
65669261 TTTGGGA-TAAAAACGCCGCTATTGATCAGTTTTTAGCGGCG
1 TTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * *
65669302 TTT-GACCAAAAAACGCTGCTATTCA-CAAGTTTTTAGTGGCC
1 TTTGGACC-AAAAACGCCGCTATTGATC-AGTTTTTAGTGGCG
* * * * *
65669343 TTTGAAACAAAAACGCCGTTATTAATCAATTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * * *
65669384 CTTGGGCAAAAAACGCCGCTATTGATCAGTTTTTAGTGGTG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
65669425 TTTGGA-CAAAAACACCGCTATTGATCAGTTTTTAGTGGTG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
65669465 TTTGGGA-TAAAAACGCCGCTATTGATCAATTTTTAGTGGCG
1 TTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
65669506 TTTGG-CCAAAAACACCGCTATTGATCGGTTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* ** * *
65669546 TTTTGG-CTAAAAACGTTGCTA-TGGTCGGTTTTTAGTGGCG
1 -TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
65669586 TTTTGG-CCAAAAA
1 -TTTGGACCAAAAA
65669599 TGCACTATTG
Statistics
Matches: 358, Mismatches: 52, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.01
40 123 0.34
41 227 0.63
42 6 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
Found at i:65669280 original size:82 final size:81
Alignment explanation
Indices: 65669139--65669598 Score: 502
Period size: 81 Copynumber: 5.7 Consensus size: 81
65669129 TTTTGCGGCA
* * *
65669139 TTTGGACCAAAAACGCCGCTATTAATCA-TTTTTAGTGGCGTTTGGACCAAAAACACCGCTATTC
1 TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGA-CAAAAACACCGCTATTG
*
65669203 ATAAGTTTTTAGTGGCG
65 ATCAGTTTTTAGTGGCG
* * * *
65669220 TTTGGAACAAAAATGCCGCTACTGATCAGTTTTTAGTGGCGTTTGGGATAAAAACGCCGCTATTG
1 TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGACAAAAACACCGCTATTG
*
65669285 ATCAGTTTTTAGCGGCG
65 ATCAGTTTTTAGTGGCG
* * * * * * *
65669302 TTT-GACCAAAAAACGCTGCTATTCA-CAAGTTTTTAGTGGCCTTTGAAACAAAAACGCCGTTAT
1 TTTGGAAC-AAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGTTTG-GACAAAAACACCGCTAT
* *
65669365 TAATCAATTTTTAGTGGCG
63 TGATCAGTTTTTAGTGGCG
* * *
65669384 CTTGG-GCAAAAAACGCCGCTATTGATCAGTTTTTAGTGGTGTTTGGACAAAAACACCGCTATTG
1 TTTGGAAC-AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACACCGCTATTG
*
65669448 ATCAGTTTTTAGTGGTG
65 ATCAGTTTTTAGTGGCG
* * * *
65669465 TTTGGGATAAAAACGCCGCTATTGATCAATTTTTAGTGGCGTTTGGCCAAAAACACCGCTATTGA
1 TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACACCGCTATTGA
*
65669530 TCGGTTTTTAGTGGCG
66 TCAGTTTTTAGTGGCG
** * * *
65669546 TTTTGG--CTAAAAACGTTGCTA-TGGTCGGTTTTTAGTGGCGTTTTGGCCAAAAA
1 -TTTGGAAC-AAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGACAAAAA
65669599 TGCACTATTG
Statistics
Matches: 321, Mismatches: 47, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
80 16 0.05
81 154 0.48
82 146 0.45
83 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (81 bp):
TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACACCGCTATTGA
TCAGTTTTTAGTGGCG
Found at i:65679578 original size:32 final size:32
Alignment explanation
Indices: 65679537--65679598 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
65679527 ACCTCCTCCG
* *
65679537 GCCGGACCGGTGACCCTTCCCCTGGCCGGAAC
1 GCCGAACCGGTGACCCCTCCCCTGGCCGGAAC
65679569 GCCGAACCGGTGACCCCTCCCCTGGCCGGA
1 GCCGAACCGGTGACCCCTCCCCTGGCCGGA
65679599 TCCCTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.13, C:0.45, G:0.31, T:0.11
Consensus pattern (32 bp):
GCCGAACCGGTGACCCCTCCCCTGGCCGGAAC
Found at i:65680119 original size:3 final size:3
Alignment explanation
Indices: 65680087--65680136 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
65680077 AATATTCTTT
* * *
65680087 TTA TTT TTA -TA TTA TTA ATA TTA -TA CTA TTA TTA TTA TTA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
65680134 TTA
1 TTA
65680137 GTATATACTC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:65680573 original size:30 final size:29
Alignment explanation
Indices: 65680520--65680589 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 29
65680510 TTTTGCTATG
* * *
65680520 TATGTATATGTTATGTGTATTTTATATAT
1 TATGTATATATTATCTGTATTTTACATAT
*
65680549 TATGTATATCATTATCTTTATTTTACATAT
1 TATGTATAT-ATTATCTGTATTTTACATAT
*
65680579 TACGTATATAT
1 TATGTATATAT
65680590 ATTAAATATC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 11 0.31
30 24 0.69
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.56
Consensus pattern (29 bp):
TATGTATATATTATCTGTATTTTACATAT
Found at i:65696763 original size:141 final size:140
Alignment explanation
Indices: 65696413--65697646 Score: 1531
Period size: 140 Copynumber: 9.0 Consensus size: 140
65696403 TACAACAAAA
* * * *
65696413 TAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAATATAC
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
* * * *
65696478 GCTTTAGCCAACTATTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
65696543 TGGCTTTGTC
131 TGGCTTTGTC
* * * *
65696553 TAGTCCTAAGGCGACACTTTTGGGGTGACACTTTCGTAAGTGTTGGGATAGACTTGCCAACATAC
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
* ** *
65696618 GCTTTCGCCAACTCTTTAAATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
*
65696683 TGGCTTTTGTG
131 TGGC-TTTGTC
65696694 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
* *
65696759 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
65696824 TGGCTTTTGTC
131 TGGC-TTTGTC
* *
65696835 TAGTCCTAAGACGACATTTTTGGGGCGATACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
* * * *
65696900 GCTTTGGCCAACTCTTTGCATAAAGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAACAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
65696965 TGGCTTTGTC
131 TGGCTTTGTC
* * *
65696975 CAGTCCTAAGATGACA-TGTTTGGGGTGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
1 TAGTCCTAAGACGACACT-TTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
* * * *
65697039 TGCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACACTTGAATAAGAG
65 TGCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAG
65697104 TTGGCTTTGTC
130 TTGGCTTTGTC
* * *
65697115 CAGTCCTAAGACGAAATTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
* *
65697180 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
65697245 TGGCTTTGTC
131 TGGCTTTGTC
* * * *
65697255 CAGTCCT-A-A-G--A----T-----GACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATAC
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA-
* * * * * *
65697306 T-TTTTGGTCAACTTTTTGTATAAGGGTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAG
65 TGCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAG
*
65697370 TCGGCTTTGTC
130 TTGGCTTTGTC
* * * * * * * *
65697381 GA-ACACTATGCCTACACATTTGGGTCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
1 TAGTC-CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
** * * **
65697445 CACTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAG
65 TGCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAG
* *
65697510 -TCG-ATT-T-
130 TTGGCTTTGTC
* * * *
65697517 T-GTCC--A-A-G--AC-TAT--GCCAACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
* * * * * *
65697572 GCTTTGGCCAACTCTTTGTATAAGAGATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
*
65697637 TAGCTTTGTC
131 TGGCTTTGTC
65697647 CAATAGTATG
Statistics
Matches: 980, Mismatches: 89, Indels: 60
0.87 0.08 0.05
Matches are distributed among these distances:
125 1 0.00
126 200 0.20
127 3 0.00
128 4 0.00
129 3 0.00
131 2 0.00
135 3 0.00
136 1 0.00
137 2 0.00
138 3 0.00
139 3 0.00
140 489 0.50
141 266 0.27
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (140 bp):
TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
GCTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTAAATAAGAGT
TGGCTTTGTC
Found at i:65697376 original size:126 final size:126
Alignment explanation
Indices: 65697141--65697648 Score: 570
Period size: 126 Copynumber: 3.9 Consensus size: 126
65697131 TTTTTGGGGC
*
65697141 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
* * * *
65697206 TTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTGTCCAGTCCTAAGAT
66 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGAT
* * * * * *
65697267 GACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATACT-TTTTGGTCAACTTTTTGTATAAGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA-TGCTTTGGCCAACTCTTTGTATAAGG
* *
65697331 GTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCGAACACTATGCCTAC
65 GTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC---CA--GT-CCTA-
*
65697396 ACATTT
123 AGA--T
**
65697402 GGGTCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCTTTGTAT
1 --G---ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTAT
** ** * *
65697467 AAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAGTCGATTTTGTCCAAG-ACTATG
61 AAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC-AGTCCTAAG
**
65697531 CC
125 AT
* * *
65697533 AACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGAG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
* * * **
65697598 ATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGTTAGCTTTGTCCA
66 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCA
65697649 ATAGTATGTC
Statistics
Matches: 320, Mismatches: 45, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
125 1 0.00
126 202 0.63
127 1 0.00
129 2 0.01
131 1 0.00
132 4 0.01
133 2 0.01
134 3 0.01
135 1 0.00
137 2 0.01
138 1 0.00
140 100 0.31
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (126 bp):
GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGAT
Found at i:65697489 original size:266 final size:266
Alignment explanation
Indices: 65696439--65697648 Score: 1249
Period size: 266 Copynumber: 4.4 Consensus size: 266
65696429 CTTTTGTGGC
* * * * * *
65696439 GACACTTTCCTAAGTGTTGGGATAGACTGGCCAATATACGCTTTAGCCAACTATTTGTATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
* * * * *
65696504 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGGCGACA
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGACCTAAGACGAAA
* ** * * *
65696569 CTTTTGGGGTGACACTTTCGTAAGTGTTGGGATAGACTTGCCAACATACGCTTTCGCCAACTCTT
131 CATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCTT
** * * * * * *
65696634 TAAATAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTC
196 TGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGAC---T-T-T-GTC
* **
65696699 CTAAGACGACACTTTTGGGGC
255 C-AAGACTA-A-------GAT
* *
65696720 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
* * * * * * *
65696785 TTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGAC
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGC-TTTGTCCAGACCTAAGACGAA
** * * **
65696850 ATTTTTGGGGCGATACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCT
130 ACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCT
* * * * *
65696915 TTGCATAAAGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAACAGTTGGCTTTGTCCAGTC
195 TTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGAC-TT-T---GTC
*
65696980 CTAAGA-TGACATGTTTGGGGT
255 C-AAGACT-A-A-------GAT
* *
65697001 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
* * * * *
65697066 TTGCGATATGTATGCCTAAGACAACACTTGAATAAGAGTTGGCTTTGTCCAGTCCTAAGACGAAA
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGACCTAAGACGAAA
** * **
65697131 TTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTT
131 CATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCTT
* * * *
65697196 TGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTGTCC-AGTC
196 TGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTCCAAG-A
65697260 CTAAGAT
260 CTAAGAT
* * * * *
65697267 GACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATACT-TTTTGGTCAACTTTTTGTATAAGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATA-TGCTTTGGCCAACTCTTTGTATAAGG
* * * * * * *
65697331 GTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCGA-ACACTATGCCTA
65 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGAC-CTAAGACGA
* *
65697395 CACATTTGGGTCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTC
129 AACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTC
* * * ** *
65697460 TTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAGTCGATTTTGTCCAAG
194 TTTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTCCAAG
* **
65697525 ACTATGCC
259 ACTAAGAT
* *
65697533 AACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGAG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
* * *
65697598 ATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGTTAGCTTTGTCCA
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCA
65697649 ATAGTATGTC
Statistics
Matches: 830, Mismatches: 89, Indels: 35
0.87 0.09 0.04
Matches are distributed among these distances:
265 2 0.00
266 322 0.39
267 3 0.00
273 3 0.00
274 1 0.00
275 5 0.01
278 1 0.00
279 5 0.01
280 137 0.17
281 225 0.27
282 126 0.15
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (266 bp):
GACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGG
TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGACCTAAGACGAAA
CATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACTCTT
TGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTCCAAGAC
TAAGAT
Found at i:65697950 original size:7 final size:7
Alignment explanation
Indices: 65697940--65697970 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
65697930 GGGTTTAAGA
65697940 TTTGGGG
1 TTTGGGG
65697947 TTTGGGG
1 TTTGGGG
*
65697954 TTTAGGG
1 TTTGGGG
65697961 TTTGGGG
1 TTTGGGG
65697968 TTT
1 TTT
65697971 AGAGTCATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.03, C:0.00, G:0.48, T:0.48
Consensus pattern (7 bp):
TTTGGGG
Found at i:65697955 original size:21 final size:21
Alignment explanation
Indices: 65697930--65697970 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65697920 TTTGGTTTTA
65697930 GGGTTTAAGATTTGGGGTTTG
1 GGGTTTAAGATTTGGGGTTTG
* *
65697951 GGGTTTAGGGTTTGGGGTTT
1 GGGTTTAAGATTTGGGGTTT
65697971 AGAGTCATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.00, G:0.46, T:0.44
Consensus pattern (21 bp):
GGGTTTAAGATTTGGGGTTTG
Found at i:65699002 original size:35 final size:35
Alignment explanation
Indices: 65698956--65699038 Score: 157
Period size: 35 Copynumber: 2.4 Consensus size: 35
65698946 TCTGCCCTAT
*
65698956 TCCAGCCACTGGTGCATCTGCCGTCGACCACCTGC
1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
65698991 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
65699026 TCCAGCCACTGGT
1 TCCAGCCACTGGT
65699039 ATGTCACGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.14, C:0.43, G:0.22, T:0.20
Consensus pattern (35 bp):
TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
Found at i:65701957 original size:27 final size:27
Alignment explanation
Indices: 65701927--65702104 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
65701917 ATATTGAGTC
* * *
65701927 CGCACACTCAGCGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
65701954 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
65701981 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
65702009 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
65702036 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
65702063 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
65702090 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65702105 GTACAATTCA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:65702068 original size:82 final size:81
Alignment explanation
Indices: 65701948--65702103 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65701938 CGCTATATAA
* *
65701948 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65702013 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65702030 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65702094 CACTTAGTGC
65 CACTTAGTGC
65702104 TGTACAATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65705654 original size:47 final size:47
Alignment explanation
Indices: 65705578--65705717 Score: 208
Period size: 47 Copynumber: 3.0 Consensus size: 47
65705568 GATTTTATGA
** * * *
65705578 GATGAATGTGAATGTGTATATTTGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
65705625 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
** *
65705672 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCTAATG
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG
65705718 CGAAATGTGT
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:65705674 original size:22 final size:22
Alignment explanation
Indices: 65705603--65705674 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
65705593 GTATATTTGA
65705603 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
65705625 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
65705650 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
65705672 GAT
1 GAT
65705675 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:65707921 original size:13 final size:13
Alignment explanation
Indices: 65707903--65707927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65707893 ATAGATTGTG
65707903 TCTTAAAAATTTT
1 TCTTAAAAATTTT
65707916 TCTTAAAAATTT
1 TCTTAAAAATTT
65707928 AAAACATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TCTTAAAAATTTT
Found at i:65709446 original size:18 final size:19
Alignment explanation
Indices: 65709421--65709511 Score: 73
Period size: 19 Copynumber: 4.8 Consensus size: 19
65709411 TAATAATAAT
65709421 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
* *
65709440 A-AAAATACATATATATATGC
1 ATAAAATA-ATA-ATATGTAC
* *
65709460 ATATAATAA-AGTATGTA-
1 ATAAAATAATAATATGTAC
*
65709477 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
65709497 AATAAAATAA-AATAT
1 -ATAAAATAATAATAT
65709512 TAAGAAACGT
Statistics
Matches: 56, Mismatches: 9, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
17 3 0.05
18 15 0.27
19 16 0.29
20 13 0.23
21 9 0.16
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.32
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:65709785 original size:39 final size:39
Alignment explanation
Indices: 65709699--65709785 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 39
65709689 TTTAAAAAAT
* * * *
65709699 ATATATATGTATATAATGGTATTTAAGAATATATACATA
1 ATATATATATATATAATGGCATTAAAAAATATATACATA
* *
65709738 AGAAATATATA-ACTAATGGCATTAAAAAATATATACATA
1 ATATATATATATA-TAATGGCATTAAAAAATATATACATA
65709777 ATATATATA
1 ATATATATA
65709786 AAATACCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.36
Consensus pattern (39 bp):
ATATATATATATATAATGGCATTAAAAAATATATACATA
Found at i:65711182 original size:30 final size:30
Alignment explanation
Indices: 65711146--65711202 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
65711136 TTTGAAAAAT
65711146 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
65711176 AGAAATTAAAAAGCTCAACTCACCTCT
1 AGAAATTAAAAAGCTCAACTCAACTCT
65711203 TGCAATATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:65711214 original size:84 final size:86
Alignment explanation
Indices: 65711106--65711263 Score: 248
Period size: 87 Copynumber: 1.8 Consensus size: 86
65711096 GACTGGAGGT
*
65711106 TCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTGAAAAATAGAAATTAAAAGACTCAACTCAA
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAACAGAAATTAAAAGACTCAACTCAA
65711169 CTCTCGCAGAAATTAAAAAGC
66 CTCTCGCAGAAATTAAAAAGC
* * *
65711190 TCAACTCACCTCTTGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTAAAAGGCTTAACTCA
1 TCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
*
65711255 CCTCTCGCA
65 ACTCTCGCA
65711264 ACATGAGTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
84 26 0.39
85 1 0.02
87 39 0.59
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (86 bp):
TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAACAGAAATTAAAAGACTCAACTCAA
CTCTCGCAGAAATTAAAAAGC
Found at i:65711270 original size:57 final size:55
Alignment explanation
Indices: 65711175--65711296 Score: 165
Period size: 57 Copynumber: 2.2 Consensus size: 55
65711165 TCAACTCTCG
* *
65711175 CAGAAATTAAAAAGCTCAACTCACCTCTTGCAATATGAGTTGAATTTTTTTGAAA-AA
1 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTG-A--TTTTTGAAACAA
* *
65711232 CAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
1 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
*
65711287 CAAAAATTAA
1 CAGAAATTAA
65711297 GAATACCTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 9 0.15
55 11 0.19
56 1 0.02
57 38 0.64
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (55 bp):
CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
Found at i:65711628 original size:73 final size:72
Alignment explanation
Indices: 65711531--65711725 Score: 248
Period size: 72 Copynumber: 2.7 Consensus size: 72
65711521 TAGAAATTAA
* * * * * *
65711531 AAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACATAAATTGAAATTACCTCAT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAACAAAAATTGAAAATACCTCAG
* *
65711596 CGTGTCCT
65 CGTGCCCC
* **
65711604 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-ACAAAAATTGAAAATACCTCAG
65711668 CGTGCCCC
65 CGTGCCCC
* *
65711676 AAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAAT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAAT
65711726 AAAAAGGCTT
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
71 3 0.03
72 67 0.64
73 34 0.33
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (72 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAATACCTCAGC
GTGCCCC
Found at i:65719922 original size:18 final size:17
Alignment explanation
Indices: 65719887--65719925 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
65719877 ACTTTTCCTT
* *
65719887 TTTTTTTAAAACACGAA
1 TTTTTTAAAAACAAGAA
65719904 TTTTTTAAAATACAAGAA
1 TTTTTTAAAA-ACAAGAA
65719922 TTTT
1 TTTT
65719926 AGAACACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (17 bp):
TTTTTTAAAAACAAGAA
Found at i:65719997 original size:17 final size:16
Alignment explanation
Indices: 65719944--65720201 Score: 144
Period size: 17 Copynumber: 15.2 Consensus size: 16
65719934 AATTTTAAAA
65719944 AAACACGAAAA-TTTG
1 AAACACGAAAATTTTG
**
65719959 AAACACGAGATTTCTTTG
1 AAACACGA-AAAT-TTTG
65719977 AAACACGAAAATTTATG
1 AAACACGAAAATTT-TG
** *
65719994 AAACACGGTCAATTTCTT
1 AAACAC-GAAAATTT-TG
*
65720012 AAACACGAAAGTTTTTG
1 AAACACGAAA-ATTTTG
* **
65720029 AAAAACGGGAATTTTTTTTG
1 AAACAC--GAA--AATTTTG
*
65720049 AAACACGAAAAAATTTG
1 AAACACG-AAAATTTTG
*
65720066 AAACACCG-GAATTTTG
1 AAACA-CGAAAATTTTG
** *
65720082 AAAACACGAGGATTTTT
1 -AAACACGAAAATTTTG
* *
65720099 AAATACGAAAA-CTTG
1 AAACACGAAAATTTTG
*
65720114 AAAACAAGAAAATTTTTG
1 -AAACACGAAAA-TTTTG
*
65720132 AAATACGAAAATTTTAG
1 AAACACGAAAATTTT-G
65720149 AAACACGAAAATTTTG
1 AAACACGAAAATTTTG
**
65720165 AAACACAGAAGTTTTTAG
1 AAACAC-GAAAATTTT-G
*
65720183 AAACACGAAAAATTTG
1 AAACACGAAAATTTTG
65720199 AAA
1 AAA
65720202 ATTGGAATTT
Statistics
Matches: 185, Mismatches: 38, Indels: 39
0.71 0.15 0.15
Matches are distributed among these distances:
15 10 0.05
16 43 0.23
17 75 0.41
18 41 0.22
19 5 0.03
20 11 0.06
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (16 bp):
AAACACGAAAATTTTG
Found at i:65720134 original size:18 final size:18
Alignment explanation
Indices: 65719943--65720284 Score: 142
Period size: 17 Copynumber: 19.9 Consensus size: 18
65719933 AAATTTTAAA
65719943 AAAACACGAAAA--TTTG
1 AAAACACGAAAATTTTTG
* *
65719959 -AAACACGAGATTTCTTTG
1 AAAACACGAAAATT-TTTG
*
65719977 -AAACACGAAAATTTATG
1 AAAACACGAAAATTTTTG
**
65719994 -AAACACGGTCAATTTCTT-
1 AAAACAC-GAAAATTT-TTG
*
65720012 -AAACACGAAAGTTTTTG
1 AAAACACGAAAATTTTTG
**
65720029 AAAA-ACGGGAATTTTTTTTG
1 AAAACAC--GAA-AATTTTTG
**
65720049 -AAACACGAAAAAATTTG
1 AAAACACGAAAATTTTTG
*
65720066 -AAACACCG-GAA-TTTTG
1 AAAACA-CGAAAATTTTTG
**
65720082 AAAACACGAGGATTTTT-
1 AAAACACGAAAATTTTTG
* *
65720099 -AAATACGAAAA--CTTG
1 AAAACACGAAAATTTTTG
*
65720114 AAAACAAGAAAATTTTTG
1 AAAACACGAAAATTTTTG
* *
65720132 -AAATACGAAAATTTTAG
1 AAAACACGAAAATTTTTG
65720149 -AAACACGAAAA-TTTTG
1 AAAACACGAAAATTTTTG
*
65720165 -AAACAC-AGAAGTTTTT-
1 AAAACACGA-AAATTTTTG
*
65720181 AGAAACACGAAAA-ATTTG
1 A-AAACACGAAAATTTTTG
** * * *
65720199 AAAA-TTGGAATTTTTTT
1 AAAACACGAAAATTTTTG
*
65720216 AAAACACGAGAATTTTTG
1 AAAACACGAAAATTTTTG
*
65720234 AAAAACATG-AAATTTTTG
1 -AAAACACGAAAATTTTTG
* **
65720252 -CAACACGGGAATTTTTG
1 AAAACACGAAAATTTTTG
65720269 AAAACACGAAAATTTT
1 AAAACACGAAAATTTT
65720285 CTGATTTTTT
Statistics
Matches: 241, Mismatches: 55, Indels: 58
0.68 0.16 0.16
Matches are distributed among these distances:
14 2 0.01
15 10 0.04
16 45 0.19
17 83 0.34
18 78 0.32
19 15 0.06
20 8 0.03
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAAACACGAAAATTTTTG
Found at i:65720141 original size:33 final size:33
Alignment explanation
Indices: 65720079--65720167 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
65720069 CACCGGAATT
**
65720079 TTGAAAACACGAGGATTTTT-AAATACGAAAAC
1 TTGAAAACACGAAAATTTTTGAAATACGAAAAC
* *
65720111 TTGAAAACAAGAAAATTTTTGAAATACGAAAAT
1 TTGAAAACACGAAAATTTTTGAAATACGAAAAC
*
65720144 TTTAGAAACACGAAAA-TTTTGAAA
1 TTGA-AAACACGAAAATTTTTGAAA
65720168 CACAGAAGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
32 17 0.35
33 22 0.45
34 10 0.20
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (33 bp):
TTGAAAACACGAAAATTTTTGAAATACGAAAAC
Found at i:65720159 original size:34 final size:34
Alignment explanation
Indices: 65719944--65720284 Score: 157
Period size: 34 Copynumber: 9.9 Consensus size: 34
65719934 AATTTTAAAA
* * *
65719944 AAACACGAAAA--TTTGAAACACGAGATTTCTTTG
1 AAACACGAAAATTTTTGAAACACGAAAATT-TTAG
* ** *
65719977 AAACACGAAAATTTATGAAACACGGTCAATTTCT-T
1 AAACACGAAAATTTTTGAAACAC-GAAAATTT-TAG
* * ** *
65720012 AAACACGAAAGTTTTTGAAAAACGGGAATTTTTTTTG
1 AAACACGAAAATTTTTGAAACAC--GAA-AATTTTAG
** *
65720049 AAACACGAAAAAATTTGAAACACCG-GAATTTT-G
1 AAACACGAAAATTTTTGAAACA-CGAAAATTTTAG
** * * *
65720082 AAAACACGAGGATTTTT-AAATACGAAAACTTGA-
1 -AAACACGAAAATTTTTGAAACACGAAAATTTTAG
* *
65720115 AAACAAGAAAATTTTTGAAATACGAAAATTTTAG
1 AAACACGAAAATTTTTGAAACACGAAAATTTTAG
**
65720149 AAACACGAAAA-TTTTGAAACACAGAAGTTTTTAG
1 AAACACGAAAATTTTTGAAACAC-GAAAATTTTAG
* * **
65720183 AAACACGAAAA-ATTTGAAA-ATTGGAATTTTTTTA-
1 AAACACGAAAATTTTTGAAACA--CGAA-AATTTTAG
* * *
65720217 AAACACGAGAATTTTTGAAAAAC-ATGAAATTTTTG
1 AAACACGAAAATTTTTGAAACACGA--AAATTTTAG
* **
65720252 CAACACGGGAATTTTTGAAAACACGAAAATTTT
1 AAACACGAAAATTTTTG-AAACACGAAAATTTT
65720285 CTGATTTTTT
Statistics
Matches: 235, Mismatches: 49, Indels: 46
0.71 0.15 0.14
Matches are distributed among these distances:
32 15 0.06
33 46 0.20
34 70 0.30
35 66 0.28
36 15 0.06
37 22 0.09
38 1 0.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.29
Consensus pattern (34 bp):
AAACACGAAAATTTTTGAAACACGAAAATTTTAG
Found at i:65720231 original size:17 final size:17
Alignment explanation
Indices: 65719889--65720284 Score: 110
Period size: 17 Copynumber: 23.2 Consensus size: 17
65719879 TTTTCCTTTT
*
65719889 TTTTTAAAACACGA-AT
1 TTTTTAAAACACGAGAA
* *
65719905 TTTTTAAAATACAAGAA
1 TTTTTAAAACACGAGAA
*
65719922 -TTTTAGAACAC-A-AA
1 TTTTTAAAACACGAGAA
*
65719936 TTTTAAAAAAACACGA-AA
1 TTTT--TAAAACACGAGAA
* * *
65719954 -ATTTGAAACACGAGAT
1 TTTTTAAAACACGAGAA
* *
65719970 TTCTTTGAAACACGAAAA
1 TT-TTTAAAACACGAGAA
* *
65719988 TTTATGAAACACG-GTCAA
1 TTTTTAAAACACGAG--AA
65720006 TTTCTT-AAACACGA-AA
1 TTT-TTAAAACACGAGAA
*
65720022 GTTTTTGAAAA-ACGGGAA
1 -TTTTT-AAAACACGAGAA
* *
65720040 TTTTTTTTGAAACACGAAAA
1 ---TTTTTAAAACACGAGAA
** *
65720060 AATTTGAAACACCG-GAA
1 TTTTTAAAACA-CGAGAA
* *
65720077 TTTTGAAAACACGAGGA
1 TTTTTAAAACACGAGAA
*
65720094 TTTTT-AAATACGA-AA
1 TTTTTAAAACACGAGAA
** * * *
65720109 ACTTGAAAACAAGAAAA
1 TTTTTAAAACACGAGAA
* *
65720126 TTTTTGAAATACGA-AA
1 TTTTTAAAACACGAGAA
*
65720142 ATTTTAGAAACACGA-AA
1 TTTTTA-AAACACGAGAA
* *
65720159 ATTTTGAAACAC-AGAA
1 TTTTTAAAACACGAGAA
*
65720175 GTTTTTAGAAACACGAAAA
1 -TTTTTA-AAACACGAGAA
* * **
65720194 ATTTGAAAA-TTG-GAA
1 TTTTTAAAACACGAGAA
65720209 TTTTTTTAAAACACGAGAA
1 --TTTTTAAAACACGAGAA
*
65720228 TTTTTGAAAAACATGA-AA
1 TTTTT--AAAACACGAGAA
** *
65720246 TTTTTGCAACACGGGAA
1 TTTTTAAAACACGAGAA
*
65720263 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAGAA
65720281 TTTT
1 TTTT
65720285 CTGATTTTTT
Statistics
Matches: 275, Mismatches: 69, Indels: 70
0.66 0.17 0.17
Matches are distributed among these distances:
14 2 0.01
15 18 0.07
16 61 0.22
17 99 0.36
18 67 0.24
19 18 0.07
20 10 0.04
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (17 bp):
TTTTTAAAACACGAGAA
Found at i:65720282 original size:35 final size:35
Alignment explanation
Indices: 65720218--65720284 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
65720208 ATTTTTTTAA
*
65720218 AACACGAGAATTTTTGAAAAACATGAAATTTTTGC
1 AACACGAGAATTTTTGAAAAACACGAAATTTTTGC
* *
65720253 AACACGGGAATTTTTG-AAAACACGAAAATTTT
1 AACACGAGAATTTTTGAAAAACACGAAATTTTT
65720285 CTGATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (35 bp):
AACACGAGAATTTTTGAAAAACACGAAATTTTTGC
Found at i:65720427 original size:20 final size:22
Alignment explanation
Indices: 65720387--65720429 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
65720377 TGTTACCTTA
65720387 TTTTTGAAAAACACGAGAAATT
1 TTTTTGAAAAACACGAGAAATT
*
65720409 TTTTTG-AAGACACGA-AAATT
1 TTTTTGAAAAACACGAGAAATT
65720429 T
1 T
65720430 CAAAACCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 8 0.40
22 6 0.30
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (22 bp):
TTTTTGAAAAACACGAGAAATT
Found at i:65720610 original size:15 final size:16
Alignment explanation
Indices: 65720592--65720637 Score: 67
Period size: 15 Copynumber: 2.8 Consensus size: 16
65720582 AAAATTATTT
65720592 AAAATAAATTAAA-TA
1 AAAATAAATTAAATTA
65720607 AAAATAAATTAAATTA
1 AAAATAAATTAAATTA
65720623 AAATATAAATATAAA
1 AAA-ATAAAT-TAAA
65720638 ATGCATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 13 0.46
16 5 0.18
17 6 0.21
18 4 0.14
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAAATTAAATTA
Found at i:65720768 original size:1 final size:1
Alignment explanation
Indices: 65720762--65720811 Score: 91
Period size: 1 Copynumber: 50.0 Consensus size: 1
65720752 ACACATGCTC
*
65720762 TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
65720812 CTGCTGGGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.02, G:0.00, T:0.98
Consensus pattern (1 bp):
T
Found at i:65720968 original size:11 final size:11
Alignment explanation
Indices: 65720954--65720987 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
65720944 TTTTTTGGGC
65720954 TTGTTTTTTTT
1 TTGTTTTTTTT
*
65720965 TTGTTTTTGTT
1 TTGTTTTTTTT
65720976 TTGTTGTTTTTT
1 TTGTT-TTTTTT
65720988 CTTGGCTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (11 bp):
TTGTTTTTTTT
Found at i:65721082 original size:17 final size:18
Alignment explanation
Indices: 65721048--65721085 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
65721038 TGTTATAATA
65721048 TTTTTATTATTTCTTTTC
1 TTTTTATTATTTCTTTTC
65721066 TTTTTCATT-TTTC-TTTC
1 TTTTT-ATTATTTCTTTTC
65721083 TTT
1 TTT
65721086 CTTCTTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 9 0.47
19 3 0.16
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTATTATTTCTTTTC
Found at i:65721084 original size:22 final size:22
Alignment explanation
Indices: 65721057--65721102 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
65721047 ATTTTTATTA
*
65721057 TTTCTTTTCTTTTTCAT-TTTTC
1 TTTC-TTTCTTCTTCATCTTTTC
*
65721079 TTTCTTTCTTCTTCCTCTTTTC
1 TTTCTTTCTTCTTCATCTTTTC
65721101 TT
1 TT
65721103 ATTCTTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTCTTTCTTCTTCATCTTTTC
Found at i:65721530 original size:29 final size:28
Alignment explanation
Indices: 65721497--65721607 Score: 98
Period size: 30 Copynumber: 3.8 Consensus size: 28
65721487 TGTAATTTTT
*
65721497 AGAAAATTTAGGATTAAAATGAAATTTA
1 AGAAAATTTAGGGTTAAAATGAAATTTA
* *
65721525 ATGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 A-GAAAATTTA-GGGT-TAAAATGAAATTT-A
* *
65721556 AGAAAGTTTAAGGGTCAAAATGAAATTTA
1 AGAAAATTT-AGGGTTAAAATGAAATTTA
*
65721585 AGAAAAGTTTAGGGGTCAAAATG
1 AGAAAA-TTTA-GGGTTAAAATG
65721608 CAGTTTTTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
28 1 0.01
29 15 0.22
30 49 0.71
31 4 0.06
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.29
Consensus pattern (28 bp):
AGAAAATTTAGGGTTAAAATGAAATTTA
Found at i:65721552 original size:30 final size:29
Alignment explanation
Indices: 65721512--65721607 Score: 138
Period size: 30 Copynumber: 3.2 Consensus size: 29
65721502 ATTTAGGATT
65721512 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAA-GAAAGTTTAGGGGTC
* * *
65721542 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTT-AAGAAAGTTTAGGGGTC
65721572 AAAATGAAATTTAAGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAG-AAAGTTTAGGGGTC
65721602 AAAATG
1 AAAATG
65721608 CAGTTTTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
29 3 0.05
30 53 0.91
31 2 0.03
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (29 bp):
AAAATGAAATTTAAGAAAGTTTAGGGGTC
Found at i:65741790 original size:32 final size:32
Alignment explanation
Indices: 65741749--65741815 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
65741739 ATGTTGTACA
65741749 TTAGAATTAAAAATACTTGAGACTAGGTTACC
1 TTAGAATTAAAAATACTTGAGACTAGGTTACC
65741781 TTAGAATTAAAAATACTTGAGACTAGGTTACC
1 TTAGAATTAAAAATACTTGAGACTAGGTTACC
65741813 TTA
1 TTA
65741816 ATAATGATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (32 bp):
TTAGAATTAAAAATACTTGAGACTAGGTTACC
Found at i:65747468 original size:42 final size:43
Alignment explanation
Indices: 65747367--65747525 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 43
65747357 AGCTTGTACA
*
65747367 ATGCCAAC-GTCCCAGA-AGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAATCAAATATCG
*
65747410 ATGCCACTATCCCAGACAGGGTCTTACACG-AGATCAAATAT-G
1 ATGCCACTGTCCCAGACAGGGTCTTACACGTA-ATCAAATATCG
* *
65747452 ATGCCGA-TGTCCCAGACATGGTCTTACATGTAAATCATAA-ATCG
1 ATGCC-ACTGTCCCAGACAGGGTCTTACACGT-AATCA-AATATCG
*
65747496 ATGCCAAC-GTCGCAGAC-GTGGTCTTACACG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACACG
65747526 AAAACACATA
Statistics
Matches: 97, Mismatches: 9, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
42 29 0.30
43 38 0.39
44 30 0.31
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATATCG
Found at i:65753669 original size:48 final size:48
Alignment explanation
Indices: 65753602--65753846 Score: 418
Period size: 48 Copynumber: 5.1 Consensus size: 48
65753592 ACGGAAATTG
*
65753602 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
65753650 ATGTATGAGATAAGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
65753698 ATGTATGAGATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
65753746 ATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
65753794 ATGTATGAGATATGTATATGTGGTAAAGTCGATTGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
65753842 ATGTA
1 ATGTA
65753847 GGCGATGTGT
Statistics
Matches: 187, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 187 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:65754101 original size:37 final size:37
Alignment explanation
Indices: 65753993--65754101 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 37
65753983 GGAAATATAT
*
65753993 TCCGGGTAAGACCCGATGACTAT-GTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACT-TCGTGTGGAGATTTTG
* * *
65754030 TCCGGGTGAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
*
65754067 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
65754102 CATCTAAGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
Found at i:65757225 original size:11 final size:10
Alignment explanation
Indices: 65757186--65757227 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
65757176 TTCTCAATTC
65757186 ATCA-ACCAA
1 ATCATACCAA
65757195 ATCATACCAA
1 ATCATACCAA
*
65757205 ATCTAAACCAA
1 ATC-ATACCAA
65757216 TATCATACCAA
1 -ATCATACCAA
65757227 A
1 A
65757228 GAATATGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 9 0.32
11 12 0.43
12 3 0.11
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (10 bp):
ATCATACCAA
Found at i:65758075 original size:42 final size:42
Alignment explanation
Indices: 65757966--65758087 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 42
65757956 AGCTCGTACA
* * *
65757966 ATGCCAATGTCCCAGACGAGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGAAG-GGTCTTACACGAAATCAAATATCG
* *
65758009 ATGCCATTGTCCCAGACAGGGTCTTAAACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGA-AGGGTCTTACACGAAATCAAATATCG
* * *
65758051 ATTCCAATGTCCTAGATGTGGTCTTACACGTAAATCA
1 ATGCCAATGTCCCAGAAG-GGTCTTACACG-AAATCA
65758088 TAAGTCGATG
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 25 0.38
43 39 0.59
44 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGAAGGGTCTTACACGAAATCAAATATCG
Found at i:65764830 original size:21 final size:23
Alignment explanation
Indices: 65764789--65764830 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
65764779 TGAAATTCCA
65764789 ACCATTTCATAACCAAAACATAC
1 ACCATTTCATAACCAAAACATAC
*
65764812 ACCATTT-AT-ACCAATACAT
1 ACCATTTCATAACCAAAACAT
65764831 TATCAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (23 bp):
ACCATTTCATAACCAAAACATAC
Found at i:65767223 original size:42 final size:42
Alignment explanation
Indices: 65767138--65767232 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
65767128 AGAAAGCTCG
* * *
65767138 TACAATGCCAATGTCCCAGACGTGGTCTTACATGTAACTAAA
1 TACAATGCCACTGTCCCAGACGTGGTCTTACACGAAACTAAA
65767180 TATCAATGCCACTG-CCCAGACAG-GGTCTTACACGAAA-TCAAA
1 TA-CAATGCCACTGTCCCAGAC-GTGGTCTTACACGAAACT-AAA
*
65767222 TACGATGCCAC
1 TACAATGCCAC
65767233 CATCTAGACG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
41 9 0.20
42 26 0.57
43 11 0.24
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (42 bp):
TACAATGCCACTGTCCCAGACGTGGTCTTACACGAAACTAAA
Found at i:65769767 original size:17 final size:19
Alignment explanation
Indices: 65769745--65769779 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
65769735 GTACTTCAAT
65769745 AATTAAT-TAGG-TAAAAC
1 AATTAATCTAGGCTAAAAC
65769762 AATTAATCTAGGCTAAAA
1 AATTAATCTAGGCTAAAA
65769780 GGAACTCGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (19 bp):
AATTAATCTAGGCTAAAAC
Found at i:65771512 original size:31 final size:31
Alignment explanation
Indices: 65771471--65771530 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
65771461 CCCTTATACA
* *
65771471 TGTAATACCCCTTACCCGAGAT-CGTCGCCAG
1 TGTAACACCCCGTACCCGAG-TCCGTCGCCAG
65771502 TGTAACACCCCGTACCCGAGTCCGTCGCC
1 TGTAACACCCCGTACCCGAGTCCGTCGCC
65771531 GGAGTCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (31 bp):
TGTAACACCCCGTACCCGAGTCCGTCGCCAG
Found at i:65773004 original size:79 final size:82
Alignment explanation
Indices: 65772893--65773077 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
65772883 GCTACTCGTT
* * *
65772893 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
65772956 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
65772973 CAAATGCCTTCAGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
65773036 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
65773053 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65773078 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:65773077 original size:40 final size:40
Alignment explanation
Indices: 65772874--65773077 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
65772864 CGGAATTTAA
** *
65772874 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
65772914 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65772954 CCGGATTTAGTAACTCGCACAAATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65772993 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
65773033 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
65773073 CCGGA
1 CCGGA
65773078 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65781246 original size:39 final size:39
Alignment explanation
Indices: 65781094--65781287 Score: 193
Period size: 39 Copynumber: 5.0 Consensus size: 39
65781084 CGGAATTTAA
** * *
65781094 CCGGATATAGCT-ACTCGTTCAAATGCCTTGGGACATAG-
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGACTTAGC
* *
65781132 CCGGTTATAGTAACTCG-ACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* *
65781171 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
* *
65781209 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGACTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGACTTAGC
* * *
65781248 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGACTTAGC
65781287 C
1 C
65781288 GGACATCATC
Statistics
Matches: 130, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
37 11 0.08
38 44 0.34
39 64 0.49
40 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:65797783 original size:19 final size:21
Alignment explanation
Indices: 65797754--65797793 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
65797744 ATAATTTCGC
65797754 CACCAATTTA-TATATGAATT
1 CACCAATTTATTATATGAATT
*
65797774 CACC-ATTTATTATTTGAATT
1 CACCAATTTATTATATGAATT
65797794 GTCATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (21 bp):
CACCAATTTATTATATGAATT
Found at i:65806866 original size:20 final size:20
Alignment explanation
Indices: 65806843--65806889 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
65806833 GTAAAGTTTT
*
65806843 ATTTTAT-TATTTAAAATATA
1 ATTTTATATATTCAAAATA-A
*
65806863 A-TTTATATATTCAAATTAA
1 ATTTTATATATTCAAAATAA
65806882 ATTTTATA
1 ATTTTATA
65806890 AATAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTTATATATTCAAAATAA
Found at i:65815162 original size:19 final size:19
Alignment explanation
Indices: 65815140--65815176 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
65815130 GGTGTTTTGT
* *
65815140 TATTTTTGGACTGTTTGGA
1 TATTTTGGGACTATTTGGA
65815159 TATTTTGGGACTATTTGG
1 TATTTTGGGACTATTTGG
65815177 TTTTGGGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.05, G:0.27, T:0.51
Consensus pattern (19 bp):
TATTTTGGGACTATTTGGA
Found at i:65817501 original size:21 final size:21
Alignment explanation
Indices: 65817475--65817519 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
65817465 TTAGGGATTA
65817475 ACATAGCACATTTTACTTTTT
1 ACATAGCACATTTTACTTTTT
65817496 ACATAGCACATTTTACTTTTT
1 ACATAGCACATTTTACTTTTT
65817517 ACA
1 ACA
65817520 CTTAGGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.44
Consensus pattern (21 bp):
ACATAGCACATTTTACTTTTT
Found at i:65822239 original size:27 final size:28
Alignment explanation
Indices: 65822155--65822252 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
65822145 CATGAGATTG
* * * *
65822155 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
65822184 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
65822212 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65822239 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
65822253 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65822263 original size:27 final size:27
Alignment explanation
Indices: 65822183--65822265 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
65822173 TAAATTGTAC
* *
65822183 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
65822211 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
65822238 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
65822265 A
1 A
65822266 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:65822266 original size:29 final size:27
Alignment explanation
Indices: 65822155--65822266 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
65822145 CATGAGATTG
** * *
65822155 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
65822184 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
65822212 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
65822239 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
65822267 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:65825672 original size:23 final size:24
Alignment explanation
Indices: 65825631--65825676 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
65825621 GTCTGATTTG
* *
65825631 ATTAAAAATTAATTAAAATTAAAA
1 ATTAAAAATAAAATAAAATTAAAA
65825655 ATTAAAAATAAAAT-AAATTAAA
1 ATTAAAAATAAAATAAAATTAAA
65825677 TTAATTATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTAAAAATAAAATAAAATTAAAA
Found at i:65827873 original size:25 final size:25
Alignment explanation
Indices: 65827812--65827862 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
65827802 ACAGGGTTCA
*
65827812 TCTCCCTAGGTATTTAGAAAATTAG
1 TCTCCCTATGTATTTAGAAAATTAG
65827837 TCTCCCTATGTATTTAGAAAATTAG
1 TCTCCCTATGTATTTAGAAAATTAG
65827862 T
1 T
65827863 TCATGCTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (25 bp):
TCTCCCTATGTATTTAGAAAATTAG
Found at i:65833295 original size:42 final size:42
Alignment explanation
Indices: 65833236--65833353 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
65833226 TTATGGTTAC
* * *
65833236 TGAGACTTTGTGTAAGACTATATATTGGATATGACATCAATA
1 TGAGACTTCGTGTAAGACCATATCTTGGATATGACATCAATA
* * * *
65833278 TGAGACTTCGTGTAAGACCACATCTAGGATATTGGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTTGGATA-TGACATCAATA
* *
65833321 CGAGA-TTACATGTAAGACCATATCTTGGATATG
1 TGAGACTT-CGTGTAAGACCATATCTTGGATATG
65833354 GCATTGGTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.31
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTTGGATATGACATCAATA
Found at i:65836488 original size:37 final size:40
Alignment explanation
Indices: 65836424--65836530 Score: 121
Period size: 41 Copynumber: 2.7 Consensus size: 40
65836414 GATAATTTGA
* * * *
65836424 AGTAATAATTTGACACCCTGTGTCTCATCG-GCTAAACCG
1 AGTAGTAAATTGACACCCAGTGTCTCATCGAACTAAACCG
* * *
65836463 -G-AGTAAATTGACACCCAGTGCCTCATCGAATTAATCCG
1 AGTAGTAAATTGACACCCAGTGTCTCATCGAACTAAACCG
65836501 AAGTAGTAAATTGACACCCAGTGTCTCATC
1 -AGTAGTAAATTGACACCCAGTGTCTCATC
65836531 ACTCAAAGTC
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
37 23 0.41
38 7 0.12
40 1 0.02
41 25 0.45
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (40 bp):
AGTAGTAAATTGACACCCAGTGTCTCATCGAACTAAACCG
Found at i:65836544 original size:41 final size:41
Alignment explanation
Indices: 65836422--65836530 Score: 118
Period size: 37 Copynumber: 2.8 Consensus size: 41
65836412 TGGATAATTT
* * * * **
65836422 GAAGTAATAATTTGACACCCTGTGTCTCATCGGCTAAA-CC
1 GAAGTAGTAAATTGACACCCAGTGCCTCATCGAATAAATCC
*
65836462 G--G-AGTAAATTGACACCCAGTGCCTCATCGAATTAATCC
1 GAAGTAGTAAATTGACACCCAGTGCCTCATCGAATAAATCC
*
65836500 GAAGTAGTAAATTGACACCCAGTGTCTCATC
1 GAAGTAGTAAATTGACACCCAGTGCCTCATC
65836531 ACTCAAAGTC
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
37 26 0.46
38 4 0.07
40 2 0.04
41 25 0.44
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
GAAGTAGTAAATTGACACCCAGTGCCTCATCGAATAAATCC
Found at i:65840241 original size:33 final size:34
Alignment explanation
Indices: 65840203--65840280 Score: 90
Period size: 32 Copynumber: 2.4 Consensus size: 34
65840193 TTTTCGATGG
** ***
65840203 ACCTTTCCTTTTCC-AGTTGTACACTGGAGGTAT
1 ACCTTTCCTTTTCCGAGCGGTACACACAAGGTAT
65840236 ACCTTT-C-TTTCCGAGCGGTACACACAAGGTAT
1 ACCTTTCCTTTTCCGAGCGGTACACACAAGGTAT
65840268 ACCTTTCCTTTTC
1 ACCTTTCCTTTTC
65840281 ATATGATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
31 5 0.14
32 21 0.57
33 7 0.19
34 4 0.11
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.37
Consensus pattern (34 bp):
ACCTTTCCTTTTCCGAGCGGTACACACAAGGTAT
Found at i:65840301 original size:33 final size:33
Alignment explanation
Indices: 65840257--65840416 Score: 230
Period size: 33 Copynumber: 4.8 Consensus size: 33
65840247 CGAGCGGTAC
* *
65840257 ACACAAGGTATACCTTTCCTTTTCATATGATAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
* * *
65840290 GCACAAAGTATACCTTTCCTTTTCATATGGTAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
** *
65840323 ACACAAAGTATACCTAACCTTTTCAAATGGTAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
*
65840356 ACACAAAGTATACATTTCCTTTTCAAATGATAT
1 ACACAAAGTATACCTTTCCTTTTCAAATGATAT
*
65840389 ACACAAAGTATACCTTTCCTTTCCAAAT
1 ACACAAAGTATACCTTTCCTTTTCAAAT
65840417 TTGATAGTCG
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 114 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (33 bp):
ACACAAAGTATACCTTTCCTTTTCAAATGATAT
Found at i:65840457 original size:29 final size:30
Alignment explanation
Indices: 65840419--65840684 Score: 243
Period size: 29 Copynumber: 8.9 Consensus size: 30
65840409 TTCCAAATTT
*
65840419 GATAGTCGAAGCTATCCCTTTTCACATTCA
1 GATAGCCGAAGCTATCCCTTTTCACATTCA
65840449 G-TAGCCGAAGCTATCCCTTTTCACATTC-
1 GATAGCCGAAGCTATCCCTTTTCACATTCA
* *
65840477 GATAGCTGAAGCTATCCCTTTTCACATT-T
1 GATAGCCGAAGCTATCCCTTTTCACATTCA
*
65840506 GATAGCCGAAGCTATCCCTTTTCACACTC-
1 GATAGCCGAAGCTATCCCTTTTCACATTCA
*
65840535 GATAGCCGAAGCTATCCCTTTTCACACTC-
1 GATAGCCGAAGCTATCCCTTTTCACATTCA
*
65840564 GATAGCCGAAGCTATCACTATTT-AC-TGATCA
1 GATAGCCGAAGCTATCCCT-TTTCACAT--TCA
* *
65840595 -AGTA-CCTGGAGCTA-CCACTTTTCACTAATCA
1 GA-TAGCC-GAAGCTATCC-CTTTTCAC-ATTCA
* *
65840626 GGTAGCCGAAGCTA-CTACTTTTCAC-TGATCA
1 GATAGCCGAAGCTATC-CCTTTTCACAT--TCA
*
65840657 GGTAGCCGAAGCTA-CCGCTTTTCACATT
1 GATAGCCGAAGCTATCC-CTTTTCACATT
65840685 GTACACATAA
Statistics
Matches: 202, Mismatches: 14, Indels: 40
0.79 0.05 0.16
Matches are distributed among these distances:
28 1 0.00
29 126 0.62
30 14 0.07
31 58 0.29
32 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (30 bp):
GATAGCCGAAGCTATCCCTTTTCACATTCA
Found at i:65840552 original size:87 final size:87
Alignment explanation
Indices: 65840406--65840579 Score: 278
Period size: 87 Copynumber: 2.0 Consensus size: 87
65840396 GTATACCTTT
* *
65840406 CCTTTCCAAATTTGATAGTCGAAGCTATCCCTTTTCACATTCAGTAGCCGAAGCTATCCCTTTTC
1 CCTTTCCAAATTTGATAGCCGAAGCTATCCCTTTTCACACTCAGTAGCCGAAGCTATCCCTTTTC
* *
65840471 ACATTCGATAGCTGAAGCTATC
66 ACACTCGATAGCCGAAGCTATC
* *
65840493 CCTTTTCACATTTGATAGCCGAAGCTATCCCTTTTCACACTC-GATAGCCGAAGCTATCCCTTTT
1 CCTTTCCAAATTTGATAGCCGAAGCTATCCCTTTTCACACTCAG-TAGCCGAAGCTATCCCTTTT
65840557 CACACTCGATAGCCGAAGCTATC
65 CACACTCGATAGCCGAAGCTATC
65840580 ACTATTTACT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
86 1 0.01
87 79 0.99
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (87 bp):
CCTTTCCAAATTTGATAGCCGAAGCTATCCCTTTTCACACTCAGTAGCCGAAGCTATCCCTTTTC
ACACTCGATAGCCGAAGCTATC
Found at i:65843087 original size:42 final size:42
Alignment explanation
Indices: 65843038--65843191 Score: 186
Period size: 42 Copynumber: 3.6 Consensus size: 42
65843028 GAGATTTATT
* * *
65843038 TGTAAGACCATATCTGAGATATGGAATCAATATGAGACTTCG
1 TGTAAGACCATATCTGAGATATGGCATCGATATGAGACTTCA
65843080 TGTAAGACCATATCT-AGGATATGGCATCGATATGAGACTTCA
1 TGTAAGACCATATCTGA-GATATGGCATCGATATGAGACTTCA
* * * * *
65843122 TGTAATATCATAGCTGGGCTATTGGCATCGATATGAGA-TTACA
1 TGTAAGACCATATCTGAGATA-TGGCATCGATATGAGACTT-CA
*
65843165 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGAGATATGGCAT
65843192 TGGAACGGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 60 0.62
43 35 0.36
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGAGATATGGCATCGATATGAGACTTCA
Found at i:65850554 original size:25 final size:25
Alignment explanation
Indices: 65850521--65850578 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 25
65850511 ATATTTTTGG
*
65850521 TTTATTTTAATT-ATA-TTTAAAATAT
1 TTTAATTTAATTGATACTTT-AAA-AT
*
65850546 TTTAATTT-ATTGATACTTTTAAAT
1 TTTAATTTAATTGATACTTTAAAAT
65850570 TTTAATTTA
1 TTTAATTTA
65850579 TTAACATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 13 0.46
25 12 0.43
26 3 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTAATTTAATTGATACTTTAAAAT
Found at i:65852895 original size:10 final size:10
Alignment explanation
Indices: 65852868--65852936 Score: 95
Period size: 10 Copynumber: 6.9 Consensus size: 10
65852858 TTAAATTTTA
65852868 AAAGATAAAT
1 AAAGATAAAT
65852878 ACAA-ATAAAT
1 A-AAGATAAAT
*
65852888 AAAGATAATT
1 AAAGATAAAT
65852898 AAAGATAAAT
1 AAAGATAAAT
*
65852908 AAAGATAATT
1 AAAGATAAAT
*
65852918 GAAGATAAAT
1 AAAGATAAAT
65852928 AAAGATAAA
1 AAAGATAAA
65852937 AGCCAAAACT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
9 2 0.04
10 47 0.92
11 2 0.04
ACGTcount: A:0.67, C:0.01, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:65853443 original size:22 final size:21
Alignment explanation
Indices: 65853418--65853473 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
65853408 ATTGGATAAA
65853418 TTTTA-AAATATAAATATAAGTT
1 TTTTATAAA-ATAAATATAA-TT
*
65853440 TTTTATTAAATAAATATAATT
1 TTTTATAAAATAAATATAATT
*
65853461 TTATATATAAATA
1 TTTTATA-AAATA
65853474 TGATTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 7 0.24
22 20 0.69
23 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTTATAAAATAAATATAATT
Found at i:65853470 original size:18 final size:18
Alignment explanation
Indices: 65853425--65853491 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 18
65853415 AAATTTTAAA
65853425 ATATAAATATAAGTTTTTTATT
1 ATATAAATATAA---TTTTA-T
*
65853447 AAATAAATATAATTTTAT
1 ATATAAATATAATTTTAT
*
65853465 ATATAAATATGATTTTAT
1 ATATAAATATAATTTTAT
*
65853483 -TTTAAATAT
1 ATATAAATAT
65853492 GATAATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.20
18 17 0.41
19 5 0.12
22 11 0.27
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
ATATAAATATAATTTTAT
Found at i:65853490 original size:17 final size:18
Alignment explanation
Indices: 65853449--65853494 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
65853439 TTTTTATTAA
*
65853449 ATAAATATAATTTTATAT
1 ATAAATATGATTTTATAT
65853467 ATAAATATGATTTTAT-T
1 ATAAATATGATTTTATAT
*
65853484 TTAAATATGAT
1 ATAAATATGAT
65853495 AATAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (18 bp):
ATAAATATGATTTTATAT
Found at i:65878146 original size:57 final size:57
Alignment explanation
Indices: 65878072--65878182 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 57
65878062 TACATACATG
* * * * *
65878072 CATATGGCCCACTAGGCCCAATCTCATTTGTATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCACTAGGCCAAATCTCATATATATGGCCCATCCGGCCCAAATCACGTT
*
65878129 CATATGGCCCA-TCAGGCCAAATCTCATATATATGGCGCATCCGGCCCAAATCAC
1 CATATGGCCCACT-AGGCCAAATCTCATATATATGGCCCATCCGGCCCAAATCAC
65878183 ATTATATCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 1 0.02
57 46 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (57 bp):
CATATGGCCCACTAGGCCAAATCTCATATATATGGCCCATCCGGCCCAAATCACGTT
Found at i:65878169 original size:28 final size:28
Alignment explanation
Indices: 65878073--65878189 Score: 98
Period size: 28 Copynumber: 4.1 Consensus size: 28
65878063 ACATACATGC
*
65878073 ATATGGCCCA-CTAGGCCC-AATCTCATTT
1 ATATGGCCCATC-AGGCCCAAATCACA-TT
* * *
65878101 GTATGGCCCATTC-GGCCCAATTCACGTT
1 ATATGGCCCA-TCAGGCCCAAATCACATT
*
65878129 CATATGGCCCATCAGG-CCAAATCTCATAT
1 -ATATGGCCCATCAGGCCCAAATCACAT-T
* *
65878158 ATATGGCGCATCCGGCCCAAATCACATT
1 ATATGGCCCATCAGGCCCAAATCACATT
65878186 ATAT
1 ATAT
65878190 CCATGCTCAC
Statistics
Matches: 71, Mismatches: 11, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
28 44 0.62
29 26 0.37
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAAATCACATT
Found at i:65878442 original size:8 final size:8
Alignment explanation
Indices: 65878409--65878447 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
65878399 ACTTTTGACT
65878409 TTTCGGCA
1 TTTCGGCA
* *
65878417 TTTCAGCT
1 TTTCGGCA
*
65878425 TTTTGGCA
1 TTTCGGCA
65878433 TTTCGGCA
1 TTTCGGCA
65878441 TTTCGGC
1 TTTCGGC
65878448 TTTTGCCGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:65881754 original size:19 final size:20
Alignment explanation
Indices: 65881730--65881767 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65881720 GGTACCACCA
65881730 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
65881749 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
65881768 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:65882063 original size:46 final size:46
Alignment explanation
Indices: 65881996--65882164 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 46
65881986 CGCCCCTAAG
* * *
65881996 TGAACTAGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
* * * * **
65882042 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACG-TTAGCATCCAT-AAA
* * * *
65882089 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
65882135 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
65882165 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 64 0.64
47 36 0.36
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
Found at i:65882107 original size:93 final size:93
Alignment explanation
Indices: 65881997--65882167 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65881987 GCCCCTAAGT
*
65881997 GAACTAGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65882062 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
65882090 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65882155 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65882168 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65886164 original size:28 final size:28
Alignment explanation
Indices: 65886090--65886179 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
65886080 CACACATGCA
*
65886090 TATATGGCCCATCCGACCCAATTCACGTT
1 TATATGGCCCATCCGGCCCAATTCAC-TT
* *
65886119 CATATGGCCCATCAGGCCCAATCTCA-TT
1 TATATGGCCCATCCGGCCCAAT-TCACTT
* * *
65886147 TATATGGCCCAGCCGGCCCAAATCACAT
1 TATATGGCCCATCCGGCCCAATTCACTT
65886175 TATAT
1 TATAT
65886180 CCATGCTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 3 0.06
28 26 0.51
29 19 0.37
30 3 0.06
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (28 bp):
TATATGGCCCATCCGGCCCAATTCACTT
Found at i:65886434 original size:15 final size:16
Alignment explanation
Indices: 65886397--65886433 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
65886387 AAACTTTCTA
*
65886397 CTTTTTGGTATTTCGG
1 CTTTTTGGCATTTCGG
65886413 CTTTTTGGCATTTCGG
1 CTTTTTGGCATTTCGG
65886429 CTTTT
1 CTTTT
65886434 GCCGATGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.16, G:0.22, T:0.57
Consensus pattern (16 bp):
CTTTTTGGCATTTCGG
Found at i:65893288 original size:39 final size:39
Alignment explanation
Indices: 65893216--65893298 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 39
65893206 TCTTTATATA
* * *
65893216 TTTT-TAAATTTTTTATAATTTAAATTATTTTTTGGGAT
1 TTTTGTAAATATTTTATAATTTAAATTATATTTTGGAAT
*
65893254 TTTTGTAAATATTTTA-AATTTTAAAATT-TATTTTGTAAT
1 TTTTGTAAATATTTTATAA-TTT-AAATTATATTTTGGAAT
65893293 TTTTGT
1 TTTTGT
65893299 CGAGAGAGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
38 6 0.16
39 27 0.71
40 5 0.13
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (39 bp):
TTTTGTAAATATTTTATAATTTAAATTATATTTTGGAAT
Found at i:65897192 original size:53 final size:55
Alignment explanation
Indices: 65897129--65897286 Score: 205
Period size: 55 Copynumber: 2.9 Consensus size: 55
65897119 TTTTGAACAT
* *
65897129 ACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAACTC
* * *
65897182 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGTAACTC
* * * *
65897237 ATCAACGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGT
65897287 GTAACGCCTC
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 39 0.44
54 1 0.01
55 45 0.51
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (55 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTAACTC
Found at i:65897638 original size:26 final size:26
Alignment explanation
Indices: 65897609--65897716 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
65897599 TGGTACAAAT
65897609 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
65897635 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65897661 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65897687 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65897713 TGAT
1 TGAT
65897717 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65903441 original size:26 final size:26
Alignment explanation
Indices: 65903412--65903519 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
65903402 TGGTACAAAT
65903412 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
65903438 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65903464 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65903490 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65903516 TGAT
1 TGAT
65903520 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65909721 original size:17 final size:17
Alignment explanation
Indices: 65909696--65909728 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
65909686 GTAAGGTATA
65909696 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
65909713 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
65909729 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:65909755 original size:28 final size:29
Alignment explanation
Indices: 65909695--65909751 Score: 84
Period size: 26 Copynumber: 2.1 Consensus size: 29
65909685 TGTAAGGTAT
*
65909695 AATATATAATAAAATATGATATGTAATAA
1 AATATATAATAAAATATGATATGAAATAA
65909724 AATATA-AATAAAATAT-A-ATGAAATAA
1 AATATATAATAAAATATGATATGAAATAA
65909750 AA
1 AA
65909752 AATACTATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 10 0.37
27 1 0.04
28 10 0.37
29 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (29 bp):
AATATATAATAAAATATGATATGAAATAA
Found at i:65909859 original size:37 final size:38
Alignment explanation
Indices: 65909815--65909907 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 38
65909805 ACAATTAATG
65909815 AATAATAATACATAATTTATAA-AAAATAGA-AATAATA
1 AATAATAATACATAATTTATAAGAAAATAGATAATAA-A
* * * *
65909852 TATAATAAAATATAATTTATAAGTAAAATATATAATAAA
1 AATAATAATACATAATTTATAAG-AAAATAGATAATAAA
*
65909891 AATAAT-ATACATTATTT
1 AATAATAATACATAATTT
65909908 TATATAACTA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
37 19 0.42
38 8 0.18
39 13 0.29
40 5 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (38 bp):
AATAATAATACATAATTTATAAGAAAATAGATAATAAA
Found at i:65911807 original size:44 final size:44
Alignment explanation
Indices: 65911716--65911886 Score: 252
Period size: 44 Copynumber: 3.9 Consensus size: 44
65911706 ATCTGCTATG
* * * ** * *
65911716 TCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATTTGCTA
65911761 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
65911805 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
* *
65911849 TCTTCGATCTGCTCTCTGACAATACAAAGATACCAAAT
1 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
65911887 CATCTTAGAT
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
44 100 0.85
45 17 0.15
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTA
Found at i:65912174 original size:44 final size:44
Alignment explanation
Indices: 65912109--65912199 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
65912099 TGAAGGTCAG
* *
65912109 ATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATACAGAGATGCCAA
*
65912153 ATCTGCTATCTTCAATTTGCTCTCTAACAATACAGAGATGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATACAGAGATGCCAA
65912197 ATC
1 ATC
65912200 ATCTTAGGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGCTCTCTAACAATACAGAGATGCCAA
Found at i:65912245 original size:312 final size:310
Alignment explanation
Indices: 65911541--65912558 Score: 1487
Period size: 312 Copynumber: 3.3 Consensus size: 310
65911531 GCCATGTTGA
* * * *
65911541 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCC-AA--ATCTTGGATCTTCTTCAACGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
* * * * * *
65911603 CACGTGAAAGCCTAATCAGCTATATCTTCAATCTGCTCCTTGTAAACGCAATGATGCCAAATCAT
66 CACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATAAACGCAAGGATGCCAAATCAT
* * *
65911668 CTTGGATCTACTTCGATGT-GAAAACATCCAAAGGTTAGATCTGCTATGTCTTCGATCTACTCTC
131 CTTGGATCTACTTCGATGTAG-AAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTC
* *
65911732 CGTCGAATATGGAGATGCCAAATCTGTTATCTTCGATCTGCTCTC--TG-ACAATACA--GAGAT
195 CGTCGAATATGGAGATGCCAAATCTGTTATCTTAGATCTGCT-TCGATGTA-AAAACATCGA-AT
* * *
65911792 GCCAAATTTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGC
257 GTCAGATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAA-TTGC
* * *
65911847 TATCTTCGATCTGCTCTCTGACAATACAAAGATACCAAATCATCTTAGATTTGCTTCAGCGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
* * *
65911912 CATGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTATAAACGCAAGGATGTCAAATCAT
66 CACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATAAACGCAAGGATGCCAAATCAT
65911977 CTTGGATCTACTTCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCC
131 CTTGGATCTACTTCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCC
* * *
65912042 GTCGGATATGGAGATGCCAAATCTATTATCTTAGATCTGCTTCGATGTAAAAACATCTGAAGGTC
196 GTCGAATATGGAGATGCCAAATCTGTTATCTTAGATCTGCTTCGATGTAAAAACATC-GAATGTC
65912107 AGATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGC
260 AGATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT-TGC
* * * * *
65912159 TATCTTCAATTTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGGTCTGCTTTAGCGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
* *
65912224 CACGTAAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATAAACGTAAGGATGCCAAATCAT
66 CACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATAAACGCAAGGATGCCAAATCAT
* *
65912289 CTTGGATCTACTTTGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGATCTCC
131 CTTGGATCTACTTCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCC
* * * * *
65912354 GTCGAATATGGAGAAGTCAAATCTGTTATCTTGGATATGCTTCGATGTGAAAACATCCGAATGTC
196 GTCGAATATGGAGATGCCAAATCTGTTATCTTAGATCTGCTTCGATGTAAAAACAT-CGAATGTC
* * *
65912419 AGATCTGCTATCTTTGATTTGCTCTCTAACAATACAGAGATGCCAAATTGC
260 AGATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTGC
* *
65912470 TATATTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTTAGCGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
65912535 CACGTGAAAGCCAAATCTGCTATG
66 CACGTGAAAGCCAAATCTGCTATG
65912559 CTTTAGCCTG
Statistics
Matches: 641, Mismatches: 59, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
306 33 0.05
307 2 0.00
308 2 0.00
309 174 0.27
310 8 0.01
311 88 0.14
312 331 0.52
313 3 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (310 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
CACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATAAACGCAAGGATGCCAAATCAT
CTTGGATCTACTTCGATGTAGAAACATCCGAAGGTTAGATCTGCTATGTCTCCGATCTGCTCTCC
GTCGAATATGGAGATGCCAAATCTGTTATCTTAGATCTGCTTCGATGTAAAAACATCGAATGTCA
GATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTGC
Found at i:65912472 original size:43 final size:43
Alignment explanation
Indices: 65912424--65912509 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
65912414 ATGTCAGATC
* * *
65912424 TGCTATCTTTGATTTGCTCTCTAACAATACAGAGATGCCAAAT
1 TGCTATATTCGATCTGCTCTCTAACAATACAGAGATGCCAAAT
*
65912467 TGCTATATTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
1 TGCTATATTCGATCTGCTCTCTAACAATACAGAGATGCCAAAT
65912510 CATCTTAGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (43 bp):
TGCTATATTCGATCTGCTCTCTAACAATACAGAGATGCCAAAT
Found at i:65920715 original size:47 final size:47
Alignment explanation
Indices: 65920660--65920851 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
65920650 TTAGGATTTT
* * *
65920660 AATGTGATGAATGTGAATATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
65920707 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
65920754 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
65920801 GATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
65920848 AATG
1 AATG
65920852 CGAAATGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 130 0.98
48 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:65920961 original size:46 final size:46
Alignment explanation
Indices: 65920825--65920961 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
65920815 GAACATGTAT
* *
65920825 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCAAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
65920871 ATATGAGATAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
65920917 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATG
65920962 TGTATATATA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 76 0.96
47 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:65922658 original size:119 final size:120
Alignment explanation
Indices: 65922446--65922915 Score: 653
Period size: 119 Copynumber: 3.9 Consensus size: 120
65922436 GAGAATTGAG
*
65922446 AGTGATATA-CCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC
1 AGTGATATATCC-GGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC
65922510 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65922566 AGTGATATATCCGGGCTAA-ACCCCAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
** * *
65922630 AAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCTGAAGAGCATT-GTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
65922684 AGTGATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTTC
1 AGTGATATATCCGGGCTAAGACC-CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC
* * *
65922748 GAAGAGCATTCATGCTAGTGATATATCCGTGTTAAGTCCCGAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** ** * * * *
65922804 AGTGACGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCT
1 AGTGATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC-
* * * *
65922868 AAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
65 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
65922916 ATCATGCTGG
Statistics
Matches: 308, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
118 26 0.08
119 169 0.55
120 110 0.36
121 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65922927 original size:40 final size:40
Alignment explanation
Indices: 65922446--65922915 Score: 635
Period size: 40 Copynumber: 11.8 Consensus size: 40
65922436 GAGAATTGAG
65922446 AGTGATATA-CCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65922486 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65922526 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65922566 AGTGATATATCCGGGCTAA-ACCCCAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65922605 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
65922645 AGTGACGTATCCGGGCTAAGTTCTGAAGAGCATT-GTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65922684 AGTGATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
** ** *
65922724 AGTGACGTATCCGGGCTAAGTTTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65922764 AGTGATATATCCGTGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
65922804 AGTGACGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
65922844 AGTGATATATCCGTGCTAA-ACCCTAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCC-GAAGAGCATTCGTGCT
* * *
65922884 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
65922916 ATCATGCTGG
Statistics
Matches: 376, Mismatches: 47, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.00
39 69 0.18
40 301 0.80
41 5 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65923137 original size:24 final size:26
Alignment explanation
Indices: 65923091--65923145 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
65923081 TGTGTAATAA
65923091 CGAATGAATAAGAGCACTATGTGTGT
1 CGAATGAATAAGAGCACTATGTGTGT
* *
65923117 -GAATGATTAAG-GCACTGTGTGTGT
1 CGAATGAATAAGAGCACTATGTGTGT
65923141 CGAAT
1 CGAAT
65923146 TCCTTTAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 12 0.46
25 14 0.54
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (26 bp):
CGAATGAATAAGAGCACTATGTGTGT
Done.