Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 196 of 373
Found at i:65927002 original size:47 final size:47
Alignment explanation
Indices: 65926947--65927138 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
65926937 TTAGGATTTT
* * *
65926947 AATGTGATGAATGTGAATATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
65926994 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
65927041 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
65927088 GATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
65927135 AATG
1 AATG
65927139 CGAAATGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 130 0.98
48 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:65927248 original size:46 final size:46
Alignment explanation
Indices: 65927112--65927248 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
65927102 GAACATGTAT
*
65927112 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
65927158 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
65927204 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
65927249 TGTATGTATA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 76 0.96
47 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:65934831 original size:17 final size:17
Alignment explanation
Indices: 65934806--65934838 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
65934796 GTAAGGTATA
65934806 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
65934823 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
65934839 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:65934957 original size:24 final size:23
Alignment explanation
Indices: 65934941--65935010 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
65934931 ATACATAATT
65934941 TATAA-AAAATAAAAATAATATA
1 TATAATAAAATAAAAATAATATA
* * *
65934963 TATAATAAAATATAATTTATA-A
1 TATAATAAAATAAAAATAATATA
*
65934985 GTAAAATATATAATAAAAATAATATA
1 -TATAATA-A-AATAAAAATAATATA
65935011 CATTATTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
22 6 0.17
23 18 0.50
24 1 0.03
25 10 0.28
26 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (23 bp):
TATAATAAAATAAAAATAATATA
Found at i:65934989 original size:18 final size:19
Alignment explanation
Indices: 65934948--65934994 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
65934938 ATTTATAAAA
65934948 AATAAAA-ATAATATATAT
1 AATAAAATATAATATATAT
65934966 AATAAAATATAAT-T-TAT
1 AATAAAATATAATATATAT
65934983 AAGTAAAATATA
1 AA-TAAAATATA
65934995 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 17 0.63
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
AATAAAATATAATATATAT
Found at i:65934998 original size:39 final size:38
Alignment explanation
Indices: 65934924--65935008 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 38
65934914 ACAATTAATG
* *
65934924 AATAATAATACATAATTTATAAAAAATAAAAATAATATA
1 AATAATAAAACATAATTTATAAAAAAT-AAAATAATAAA
* * *
65934963 TATAATAAAATATAATTTATAAGTAAAAT-ATATAATAAA
1 AATAATAAAACATAATTTATAA--AAAATAAAATAATAAA
65935002 AATAATA
1 AATAATA
65935009 TACATTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
39 33 0.87
41 5 0.13
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (38 bp):
AATAATAAAACATAATTTATAAAAAATAAAATAATAAA
Found at i:65951657 original size:51 final size:51
Alignment explanation
Indices: 65951602--65951701 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
65951592 CTACCACATA
**
65951602 ACATGTAA-CACATCCATAATGAACTTTGACCTCTCAACGAGCTCGGATGTT
1 ACATG-AATCACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTT
* * * *
65951653 ACATGAATCGCATCCATTATGAGCTCGGACCTCTCAATGAGCTCGGATG
1 ACATGAATCACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
65951702 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGTT
Found at i:65955195 original size:28 final size:28
Alignment explanation
Indices: 65955132--65955254 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
65955122 ATATTAAGTC
*
65955132 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65955159 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65955187 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
65955215 TGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65955244 CGCACACTTAG
1 CGCACACTTAG
65955255 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.26
28 48 0.56
29 15 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65966117 original size:29 final size:28
Alignment explanation
Indices: 65966081--65966158 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
65966071 TCATGAGATT
65966081 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
65966111 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
65966138 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
65966159 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:65966376 original size:174 final size:174
Alignment explanation
Indices: 65966111--65966438 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
65966101 AAATTGTACA
65966111 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
65966176 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65966241 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
65966285 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
65966350 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65966415 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
65966439 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:65970244 original size:27 final size:27
Alignment explanation
Indices: 65970182--65970291 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
65970172 CATGGCTGTT
* *
65970182 AGAACAGATA-ATGTGACAGAGTCACC
1 AGAACAGATATATGTGGCAGAGCCACC
*
65970208 AGATATAGATA-ATCGTGGCAGAGCCACC
1 AGA-ACAGATATAT-GTGGCAGAGCCACC
*
65970236 AGAACAGATATATGTGGTAGAGCCACC
1 AGAACAGATATATGTGGCAGAGCCACC
* * * *
65970263 AGATCAGATATTTCTGGCATAGCCACC
1 AGAACAGATATATGTGGCAGAGCCACC
65970290 AG
1 AG
65970292 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
26 3 0.04
27 51 0.72
28 17 0.24
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
AGAACAGATATATGTGGCAGAGCCACC
Found at i:65970272 original size:54 final size:54
Alignment explanation
Indices: 65970182--65970291 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 54
65970172 CATGGCTGTT
* *
65970182 AGAACAGATAATGTGACAGAGTCACCAGATATAGATA-ATCGTGGCAGAGCCACC
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATATATC-TGGCAGAGCCACC
** * *
65970236 AGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATATTTCTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATATATCTGGCAGAGCCACC
65970290 AG
1 AG
65970292 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 29 0.60
55 19 0.40
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATATATCTGGCAGAGCCACC
Found at i:65973807 original size:25 final size:25
Alignment explanation
Indices: 65973762--65973844 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
65973752 CAGCTCGTAT
65973762 GAGCTTACTGT---TCAGCTCAATA
1 GAGCTTACTGTCCATCAGCTCAATA
65973784 GAGCTTACTGTCCATCAGCTCAATA
1 GAGCTTACTGTCCATCAGCTCAATA
* *
65973809 GAGCTTACTATCCATCAGCTCAAGA
1 GAGCTTACTGTCCATCAGCTCAATA
65973834 GAAGCTTACTG
1 G-AGCTTACTG
65973845 ATCATGGCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
22 11 0.20
25 35 0.65
26 8 0.15
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (25 bp):
GAGCTTACTGTCCATCAGCTCAATA
Found at i:65975634 original size:46 final size:46
Alignment explanation
Indices: 65975562--65975731 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
65975552 TGTAACCCAC
* * *
65975562 CCATAAATGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
65975608 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * * *
65975658 -C-TC-ACGAACTTGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
65975701 CCAT-AAGTGAACTCGGACTCAACTCAACGAG
1 CCATCAA-TGAACTCGGACTCAACTCAACGAG
65975732 TTCAGATGCC
Statistics
Matches: 101, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATCAATGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:65976208 original size:30 final size:30
Alignment explanation
Indices: 65976161--65976220 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
65976151 ATTTAATAAG
*
65976161 AACTTTGGCAAAGTTACATTTTTGCCCCTA
1 AACTTTGGCAAAGTTACACTTTTGCCCCTA
*
65976191 AACTTTTGCATAA-TTACACTTTTGCCCCTA
1 AACTTTGGCA-AAGTTACACTTTTGCCCCTA
65976221 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAGTTACACTTTTGCCCCTA
Found at i:65979841 original size:47 final size:47
Alignment explanation
Indices: 65979790--65980341 Score: 853
Period size: 47 Copynumber: 11.7 Consensus size: 47
65979780 TTAGGATTCT
* * *
65979790 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
65979837 ATGTGATGAAAGT----GTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65979880 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
65979929 ATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
65979976 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65980023 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
65980072 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65980119 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65980166 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65980213 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
65980260 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65980307 ACGTGATGTATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65980342 TCCCGAAGGG
Statistics
Matches: 467, Mismatches: 29, Indels: 18
0.91 0.06 0.04
Matches are distributed among these distances:
43 38 0.08
47 337 0.72
49 92 0.20
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65979935 original size:22 final size:22
Alignment explanation
Indices: 65979907--65979984 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
65979897 GTGTATATAT
65979907 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* ** ****
65979929 ATGTGATGAATGCGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
65979954 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
65979976 ATGTGATAA
1 ATGTGATAA
65979985 ATGTGAAAGT
Statistics
Matches: 39, Mismatches: 14, Indels: 6
0.66 0.24 0.10
Matches are distributed among these distances:
22 16 0.41
23 8 0.21
24 8 0.21
25 7 0.18
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:65980044 original size:143 final size:143
Alignment explanation
Indices: 65979790--65980341 Score: 872
Period size: 143 Copynumber: 3.9 Consensus size: 143
65979780 TTAGGATTCT
* * *
65979790 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAAA-GT---
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT-AAATGTGAA
* *
65979850 -GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65979914 AAGGCCTAATGGCCG
129 AAGGCCTAATGGCCG
*
65979929 ATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
65979994 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
65980059 GGCCTAATGGCCG
131 GGCCTAATGGCCG
65980072 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
*
65980137 TGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
66 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
65980200 GGCCTAATGGCCG
131 GGCCTAATGGCCG
*
65980213 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
* * * * * * * *
65980278 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGTATGTGAAAGTGTATA-A-ATGTGATAA
66 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
65980341 G
131 G
65980342 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 18, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
138 4 0.01
139 50 0.13
141 141 0.36
142 1 0.00
143 191 0.49
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCG
Found at i:65980516 original size:37 final size:37
Alignment explanation
Indices: 65980463--65980538 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
65980453 AGCTCTAAAA
* * *
65980463 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
*
65980500 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
65980537 AC
1 AC
65980539 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:65982501 original size:39 final size:40
Alignment explanation
Indices: 65982397--65982776 Score: 214
Period size: 40 Copynumber: 9.5 Consensus size: 40
65982387 ATGATGCCCT
* * *
65982397 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
*
65982437 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* * *
65982477 GGCTAAG-CCCGAAGGGATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* *
65982516 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
* * * * *
65982556 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GTATCCG
1 GGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT-TCCG
** * * *
65982596 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-T-GTATCCG
1 GGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT-TCCG
* * * * *
65982636 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GTATCCG
1 GGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT-TCCG
** * * *
65982676 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-T-GTATCCG
1 GGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT-TCCG
* * * * *
65982716 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-T-GTATCCG
1 GGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT-TCCG
65982756 GGCTAAGTCCCGAAGAGCATT
1 GGCTAAGTCCCGAAG-GCATT
65982777 CATGCTAGTG
Statistics
Matches: 304, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
39 35 0.12
40 246 0.81
41 23 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:65982531 original size:79 final size:80
Alignment explanation
Indices: 65982397--65982828 Score: 351
Period size: 80 Copynumber: 5.4 Consensus size: 80
65982387 ATGATGCCCT
* * * * *
65982397 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTG
1 GGCTAAGTCCCGAAGAGCATTCGTGC-GAGTGA-TAAATCCGGGCTAAG-TCCCGAAGGCATTTG
*
65982459 TGCGAGTTACTA-ATTCCG
63 TGCGAGTTACTATA-ACCG
* * * *
65982477 GGCTAAG-CCCGAAG-GGATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGGCTAAGTCCCGAAGGCATTTGTG
65982540 CGAGTTACTATAACCG
65 CGAGTTACTATAACCG
* * ** **
65982556 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATG
1 GGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAGTCCCGAAG-GCATTTGTG
* * * *
65982621 CTAGTGA-TGTATCCG
65 CGAGTTACTATAACCG
* * ** **
65982636 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATG
1 GGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAGTCCCGAAG-GCATTTGTG
* * * *
65982701 CTAGTGA-TGTATCCG
65 CGAGTTACTATAACCG
* * ** **
65982716 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATG
1 GGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAGTCCCGAAG-GCATTTGTG
* * * *
65982781 CTAGTGA-TGTATCCG
65 CGAGTTACTATAACCG
* *
65982796 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 GGCTAAGTCCCGAAGAGCATTCGTGCGAGTGAT
65982829 CGCATATAGA
Statistics
Matches: 323, Mismatches: 23, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
78 1 0.00
79 59 0.18
80 239 0.74
81 24 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTATAACCG
Found at i:65982617 original size:40 final size:40
Alignment explanation
Indices: 65982511--65982828 Score: 503
Period size: 40 Copynumber: 8.0 Consensus size: 40
65982501 GAGTTACTAA
* * * * *
65982511 ATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGT
* *
65982551 AACCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
65982591 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
65982631 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
65982671 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
65982711 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
65982751 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
65982791 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
65982829 CGCATATAGA
Statistics
Matches: 257, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 244 0.95
41 13 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
Found at i:65982637 original size:80 final size:80
Alignment explanation
Indices: 65982511--65982828 Score: 557
Period size: 80 Copynumber: 4.0 Consensus size: 80
65982501 GAGTTACTAA
* ** * * * *
65982511 ATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGCTAAGTTCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
65982575 TTCGTGCTAGTGATGT
65 TTCGTGCTAGTGATGT
65982591 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
65982656 TCGTGCTAGTGATGT
66 TCGTGCTAGTGATGT
65982671 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
65982736 TCGTGCTAGTGATGT
66 TCGTGCTAGTGATGT
65982751 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
65982816 TCGTGCTAGTGAT
66 TCGTGCTAGTGAT
65982829 CGCATATAGA
Statistics
Matches: 230, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
80 218 0.95
81 12 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
TCGTGCTAGTGATGT
Found at i:65987764 original size:109 final size:109
Alignment explanation
Indices: 65987573--65987791 Score: 420
Period size: 109 Copynumber: 2.0 Consensus size: 109
65987563 AACATATTTT
65987573 GTATTGGAGTTTTTGATAATTTTGAGTAATTAGGAGTAAAATTGCAAAAATAATAATTTAAGGGA
1 GTATTGGAGTTTTTGATAATTTTGAGTAATTAGGAGTAAAATTGCAAAAATAATAATTTAAGGGA
*
65987638 CTAAAATTCGAAATAAATCGAATATATGGACTTGTTTGAGAGTG
66 CTAAAATTCAAAATAAATCGAATATATGGACTTGTTTGAGAGTG
*
65987682 GTATTGGAGTTTTTGATAATTTTGAGTAATTAGGAGTAAAATTGCAAAAATAATAATTTGAGGGA
1 GTATTGGAGTTTTTGATAATTTTGAGTAATTAGGAGTAAAATTGCAAAAATAATAATTTAAGGGA
65987747 CTAAAATTCAAAATAAATCGAATATATGGACTTGTTTGAGAGTG
66 CTAAAATTCAAAATAAATCGAATATATGGACTTGTTTGAGAGTG
65987791 G
1 G
65987792 GTAAAATTCG
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.35
Consensus pattern (109 bp):
GTATTGGAGTTTTTGATAATTTTGAGTAATTAGGAGTAAAATTGCAAAAATAATAATTTAAGGGA
CTAAAATTCAAAATAAATCGAATATATGGACTTGTTTGAGAGTG
Found at i:65997044 original size:29 final size:29
Alignment explanation
Indices: 65997009--65997082 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
65996999 GTTGTGAGAT
* *
65997009 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
65997038 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
65997067 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65997083 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:66005354 original size:29 final size:29
Alignment explanation
Indices: 66005319--66005393 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
66005309 GTTGTGAGAT
* *
66005319 TGGCACTAAGTGTGCGGGCTTAAAATGCA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
* *
66005348 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
*
66005377 TGGCACTATGTGTGCGA
1 TGGCACTAAGTGTGCGA
66005394 ACCCACTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAAATACA
Found at i:66014586 original size:21 final size:21
Alignment explanation
Indices: 66014546--66014587 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
66014536 CCTCCAGCAT
*
66014546 GGGCGTGTCCCGGGGTCACAC
1 GGGCGTGTCCCGGGGACACAC
**
66014567 GGGCGTGTCCCTTGGACACAC
1 GGGCGTGTCCCGGGGACACAC
66014588 AAGCATGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.33, G:0.38, T:0.17
Consensus pattern (21 bp):
GGGCGTGTCCCGGGGACACAC
Found at i:66017980 original size:40 final size:40
Alignment explanation
Indices: 66017913--66018062 Score: 219
Period size: 40 Copynumber: 3.8 Consensus size: 40
66017903 ATAACCACAA
* * * * *
66017913 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
66017953 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
66017993 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
66018033 GCACAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
66018063 GTATTCAAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:66021611 original size:53 final size:53
Alignment explanation
Indices: 66021428--66021682 Score: 240
Period size: 55 Copynumber: 4.8 Consensus size: 53
66021418 ATTAGGGTTT
* * * *
66021428 AAGGATACCATGTAAGATCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * *
66021483 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
66021538 AAAGG-TCCCATGTAAGACCATG-CGAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGGC
*
66021591 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * *
66021640 AAGGATACC-TCGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCAT-GTAAGACCATGTCAAGACATGGCATTGGTAAG
66021683 GTACCCACGT
Statistics
Matches: 172, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
48 1 0.01
49 39 0.23
51 1 0.01
52 8 0.05
53 43 0.25
54 10 0.06
55 66 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:66021634 original size:108 final size:110
Alignment explanation
Indices: 66021435--66021635 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
66021425 TTTAAGGATA
* *
66021435 CCATGTAAGATCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
66021500 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
66021545 CCATGTAAGACCATGCGAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
66021607 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
66021636 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:66029002 original size:55 final size:54
Alignment explanation
Indices: 66028915--66029169 Score: 228
Period size: 55 Copynumber: 4.8 Consensus size: 54
66028905 ATTAGGGTTT
* *
66028915 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
66028970 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
** * *
66029025 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
66029078 AAGGATACCATGTAAGACAATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* *
66029127 AAGGATAACACA--TAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGA-AAC-CATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
66029170 GTACCCACGT
Statistics
Matches: 168, Mismatches: 23, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
49 33 0.20
50 2 0.01
51 2 0.01
52 7 0.04
53 40 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:66029110 original size:53 final size:53
Alignment explanation
Indices: 66028915--66029122 Score: 249
Period size: 55 Copynumber: 3.8 Consensus size: 53
66028905 ATTAGGGTTT
*
66028915 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * *
66028970 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
66029025 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
66029078 AAGGATACCATGTAAGACAATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
66029123 TCAAAAGGAT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 6 0.05
53 43 0.33
54 8 0.06
55 69 0.53
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:66029121 original size:108 final size:110
Alignment explanation
Indices: 66028922--66029122 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
66028912 TTTAAGGATA
*
66028922 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
66028987 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CAATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
66029032 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
66029094 ACAATGTCAAGACATGGCAATGGTAAGTT
65 ACAATGTCAAGACATGGCAATGATAAGTT
66029123 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CAATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:66031239 original size:40 final size:40
Alignment explanation
Indices: 66031176--66031396 Score: 256
Period size: 40 Copynumber: 5.5 Consensus size: 40
66031166 TATTCGAATG
* *
66031176 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
66031216 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
66031256 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
66031296 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * *
66031336 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
66031376 ATATCC-GGCTAA-ATCTCGAAG
1 ATATCCGGGCTAAGATC-CGAAG
66031397 ATACTTGGGT
Statistics
Matches: 156, Mismatches: 18, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 11 0.07
40 138 0.88
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:66038592 original size:24 final size:25
Alignment explanation
Indices: 66038560--66038606 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
66038550 TGTGACTATT
66038560 GGTTAATGAAT-AATCGCATAATGG
1 GGTTAATGAATAAATCGCATAATGG
* * *
66038584 GGTTTATGAGTAAATGGCATAAT
1 GGTTAATGAATAAATCGCATAAT
66038607 TATATATGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 9 0.47
25 10 0.53
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (25 bp):
GGTTAATGAATAAATCGCATAATGG
Found at i:66039253 original size:40 final size:40
Alignment explanation
Indices: 66039197--66039419 Score: 295
Period size: 40 Copynumber: 5.5 Consensus size: 40
66039187 TATTCGGATG
*
66039197 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
66039237 TTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTATTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG--TTACT
* * *
66039279 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* ** * *
66039319 ATATCCGGGCTAAGTCCTGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
66039359 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
66039399 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66039420 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
42 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:66039341 original size:82 final size:80
Alignment explanation
Indices: 66039201--66039419 Score: 282
Period size: 82 Copynumber: 2.7 Consensus size: 80
66039191 CGGATGATAT
* * **
66039201 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTTTATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
66039266 TGCGAGT-ATTGCTATAC
66 TGCTAGTGA---CTATAC
* *
66039283 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
66039348 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
66039363 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
66039420 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 13 0.11
80 42 0.34
81 2 0.02
82 65 0.53
83 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:66046802 original size:25 final size:25
Alignment explanation
Indices: 66046760--66046807 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66046750 TGTGACTATT
*
66046760 GGTTAATGAATAATTGGCATAATGG
1 GGTTAATGAATAAATGGCATAATGG
* *
66046785 GGTTTATGAGTAAATGGCATAAT
1 GGTTAATGAATAAATGGCATAAT
66046808 ATATATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.33
Consensus pattern (25 bp):
GGTTAATGAATAAATGGCATAATGG
Found at i:66047466 original size:40 final size:40
Alignment explanation
Indices: 66047410--66047593 Score: 226
Period size: 40 Copynumber: 4.5 Consensus size: 40
66047400 TATTCGGATG
66047410 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
66047450 TTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* ** * *
66047493 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
66047533 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGACTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
66047573 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66047594 ATACTTGGTT
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 13 0.11
40 74 0.61
41 1 0.01
43 34 0.28
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:66047553 original size:83 final size:83
Alignment explanation
Indices: 66047414--66047566 Score: 252
Period size: 83 Copynumber: 1.8 Consensus size: 83
66047404 CGGATGATAT
** * * *
66047414 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTTTATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
66047479 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
*
66047497 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
66047562 TGCGA
66 TGCGA
66047567 CTTGCTATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTAGTTGCTATAC
Found at i:66051393 original size:28 final size:27
Alignment explanation
Indices: 66051330--66051481 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
66051320 ATATTAAGTC
* * *
66051330 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
66051357 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
66051385 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
66051412 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
66051440 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
66051467 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66051482 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:66051414 original size:55 final size:55
Alignment explanation
Indices: 66051330--66051481 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
66051320 ATATTAAGTC
* * *
66051330 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
66051385 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
66051440 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
66051482 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:66056082 original size:43 final size:43
Alignment explanation
Indices: 66055998--66056126 Score: 213
Period size: 43 Copynumber: 3.0 Consensus size: 43
66055988 ACCGGGCAAA
*
66055998 TTAGCAGCGCTTTTTTAAAAAACGCCGCTAAAAGTCCCTGGTCT
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAAGT-CCTGGTCT
*
66056042 TTAGCGGCGCTTTTTTACAAAACGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAAGTCCTGGTCT
* *
66056085 TTAGCGGCGCTTTTTTATAAAACGCCACTAAAAGTCCTGGTC
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAAGTCCTGGTC
66056127 AAAAAAACGC
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
43 48 0.59
44 33 0.41
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAAGTCCTGGTCT
Found at i:66058722 original size:77 final size:77
Alignment explanation
Indices: 66058595--66058747 Score: 270
Period size: 77 Copynumber: 2.0 Consensus size: 77
66058585 CTATAAATAT
*
66058595 GTTTAATTTTTTGTTAAGTAAGGTTTTTCCTCATTGTCTCCGGTGATATTTTTTATTGCAATGAC
1 GTTTAATTTTTTGTTAAGTAAGGTTTTTCCTCATTGTCACCGGTGATATTTTTTATTGCAATGAC
66058660 TAATAGGACAGG
66 TAATAGGACAGG
* *
66058672 GTTTAATTTTTTGTTCAGTAAGGTTTTTCCTTATTGTCACCGGTGATATTTTTTATTGCAATGAC
1 GTTTAATTTTTTGTTAAGTAAGGTTTTTCCTCATTGTCACCGGTGATATTTTTTATTGCAATGAC
*
66058737 TAATGGGACAG
66 TAATAGGACAG
66058748 TGAATTTAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.46
Consensus pattern (77 bp):
GTTTAATTTTTTGTTAAGTAAGGTTTTTCCTCATTGTCACCGGTGATATTTTTTATTGCAATGAC
TAATAGGACAGG
Found at i:66061278 original size:61 final size:57
Alignment explanation
Indices: 66061183--66061324 Score: 176
Period size: 61 Copynumber: 2.4 Consensus size: 57
66061173 TTGTTATTAA
* * * * *
66061183 ATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATACAATTTAAT-AAAATAAT-AT--ATAATTCAATAAC
* *
66061244 ATTTTAACATAATTATTGTTAAATACAATTTAATAAAATAATATATAATTCAATAAC
1 ATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATATATAATTCAATAAC
66061301 ATTCTTAATATAATTATTATTAAA
1 ATT-TTAATATAATTATTATTAAA
66061325 ATATGAAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
57 13 0.18
58 18 0.25
59 2 0.03
60 8 0.11
61 30 0.42
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATATATAATTCAATAAC
Found at i:66066794 original size:27 final size:27
Alignment explanation
Indices: 66066764--66066941 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66066754 ATATTGAGTC
* * * *
66066764 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
66066791 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66066818 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
66066846 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
66066873 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
66066900 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66066927 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66066942 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:66066903 original size:82 final size:81
Alignment explanation
Indices: 66066785--66066940 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66066775 TGCTATATAA
* *
66066785 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66066850 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66066867 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66066931 CACTTAGTGC
65 CACTTAGTGC
66066941 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66073575 original size:38 final size:38
Alignment explanation
Indices: 66073532--66073765 Score: 267
Period size: 38 Copynumber: 6.2 Consensus size: 38
66073522 GTGGTATACT
*
66073532 TTCTGTTTGGCG-TCTTGGTTGGATCAACTCTTATGGGC
1 TTCTGTTTGGCGAT-TTGGTTGGATCAACTCTTATGAGC
* * * * *
66073570 TTCTGTTTGGTGATTCGATTGGATTAGCTCTTATGAGC
1 TTCTGTTTGGCGATTTGGTTGGATCAACTCTTATGAGC
* **
66073608 TTCTGTTTGGCG-TTTCGGTTGGATCAACTCATATGAAA
1 TTCTGTTTGGCGATTT-GGTTGGATCAACTCTTATGAGC
*
66073646 TTCTGTTTGGCGATTCGGTTGGATCAACTCTTATGAGC
1 TTCTGTTTGGCGATTTGGTTGGATCAACTCTTATGAGC
* * ***
66073684 TTCTATTTGGTGATTCATTTGGATCAACTCTTATGAGC
1 TTCTGTTTGGCGATTTGGTTGGATCAACTCTTATGAGC
* *
66073722 TTCTGTTTGGTG-TTTCGGTTGGATCAGCTCTTATGAGC
1 TTCTGTTTGGCGATTT-GGTTGGATCAACTCTTATGAGC
66073760 TTCTGT
1 TTCTGT
66073766 CTAGTGTGTT
Statistics
Matches: 165, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 4 0.02
38 158 0.96
39 3 0.02
ACGTcount: A:0.15, C:0.16, G:0.25, T:0.43
Consensus pattern (38 bp):
TTCTGTTTGGCGATTTGGTTGGATCAACTCTTATGAGC
Found at i:66073661 original size:76 final size:76
Alignment explanation
Indices: 66073532--66073765 Score: 326
Period size: 76 Copynumber: 3.1 Consensus size: 76
66073522 GTGGTATACT
* * *
66073532 TTCTGTTTGGCGTCTT-GGTTGGATCAACTCTTATGGGCTTCTGTTTGGTGATTCGATTGGATTA
1 TTCTGTTTGGCGT-TTCGGTTGGATCAACTCTTATGAGCTTCTGTTTGGTGATTCGGTTGGATCA
66073596 GCTCTTATGAGC
65 GCTCTTATGAGC
* ** * *
66073608 TTCTGTTTGGCGTTTCGGTTGGATCAACTCATATGAAATTCTGTTTGGCGATTCGGTTGGATCAA
1 TTCTGTTTGGCGTTTCGGTTGGATCAACTCTTATGAGCTTCTGTTTGGTGATTCGGTTGGATCAG
66073673 CTCTTATGAGC
66 CTCTTATGAGC
* * * ** *
66073684 TTCTATTTGGTGATTCATTTGGATCAACTCTTATGAGCTTCTGTTTGGTGTTTCGGTTGGATCAG
1 TTCTGTTTGGCGTTTCGGTTGGATCAACTCTTATGAGCTTCTGTTTGGTGATTCGGTTGGATCAG
66073749 CTCTTATGAGC
66 CTCTTATGAGC
66073760 TTCTGT
1 TTCTGT
66073766 CTAGTGTGTT
Statistics
Matches: 137, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
75 2 0.01
76 135 0.99
ACGTcount: A:0.15, C:0.16, G:0.25, T:0.43
Consensus pattern (76 bp):
TTCTGTTTGGCGTTTCGGTTGGATCAACTCTTATGAGCTTCTGTTTGGTGATTCGGTTGGATCAG
CTCTTATGAGC
Found at i:66073765 original size:114 final size:114
Alignment explanation
Indices: 66073532--66073757 Score: 348
Period size: 114 Copynumber: 2.0 Consensus size: 114
66073522 GTGGTATACT
* * * * *
66073532 TTCTGTTTGGCGTCTTGGTTGGATCAACTCTTATGGGCTTCTGTTTGGTGATTCGATTGGATTAG
1 TTCTGTTTGGCGTCTCGGTTGGATCAACTCTTATGAGCTTCTATTTGGTGATTCGATTGGATCAA
66073597 CTCTTATGAGCTTCTGTTTGGCGTTTCGGTTGGATCAACTCATATGAAA
66 CTCTTATGAGCTTCTGTTTGGCGTTTCGGTTGGATCAACTCATATGAAA
66073646 TTCTGTTTGGCGAT-TCGGTTGGATCAACTCTTATGAGCTTCTATTTGGTGATTC-ATTTGGATC
1 TTCTGTTTGGCG-TCTCGGTTGGATCAACTCTTATGAGCTTCTATTTGGTGATTCGA-TTGGATC
* * *
66073709 AACTCTTATGAGCTTCTGTTTGGTGTTTCGGTTGGATCAGCTCTTATGA
64 AACTCTTATGAGCTTCTGTTTGGCGTTTCGGTTGGATCAACTCATATGA
66073758 GCTTCTGTCT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
113 1 0.01
114 100 0.98
115 1 0.01
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43
Consensus pattern (114 bp):
TTCTGTTTGGCGTCTCGGTTGGATCAACTCTTATGAGCTTCTATTTGGTGATTCGATTGGATCAA
CTCTTATGAGCTTCTGTTTGGCGTTTCGGTTGGATCAACTCATATGAAA
Found at i:66078031 original size:103 final size:103
Alignment explanation
Indices: 66077847--66078043 Score: 322
Period size: 103 Copynumber: 1.9 Consensus size: 103
66077837 GATTAGCTGC
* * * *
66077847 GTGGAGAATTAAATTCCAAAAATTAAGTGCAGACTTCACATGGCCTGGGCACACACCCATTTCCT
1 GTGGAGAATTAAATTCCAAAAATTAAGTGCAGACTTCACACGGCCTAGCCACACACCCATATCCT
*
66077912 GAGGTCGTGTCCTCCACACAGCTGAGACATAAGGCCGT
66 GAGGCCGTGTCCTCCACACAGCTGAGACATAAGGCCGT
* *
66077950 GTGGCGAATTACATTCCAAAAATTAAGTGCAGACTTCACACGGCCTAGCCACACACCCATATCCT
1 GTGGAGAATTAAATTCCAAAAATTAAGTGCAGACTTCACACGGCCTAGCCACACACCCATATCCT
*
66078015 GAGGCCGTGTCCTCCACACGGCTGAGACA
66 GAGGCCGTGTCCTCCACACAGCTGAGACA
66078044 CATGACTGTG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 86 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (103 bp):
GTGGAGAATTAAATTCCAAAAATTAAGTGCAGACTTCACACGGCCTAGCCACACACCCATATCCT
GAGGCCGTGTCCTCCACACAGCTGAGACATAAGGCCGT
Found at i:66079378 original size:20 final size:20
Alignment explanation
Indices: 66079353--66079390 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66079343 GTCACATATA
66079353 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
66079373 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
66079391 TAGTTCCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:66082569 original size:48 final size:48
Alignment explanation
Indices: 66082504--66082651 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 48
66082494 GGGCTATCGA
*
66082504 CATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTAG
1 CATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
* * * *
66082552 CATCGATCTATGATCCCACGTAAGACCATGTTTGGGACATGGCATTGG
1 CATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
* * * *
66082600 CATCGATTTGTGATCCCATGTAAGACCATATCTGGGATATGGCTTTGG
1 CATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
66082648 CATC
1 CATC
66082652 TTACCATGTG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (48 bp):
CATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
Found at i:66094755 original size:16 final size:17
Alignment explanation
Indices: 66094722--66094757 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
66094712 GTGTCCCAAG
66094722 CCACACGGGCGTGTGTGA
1 CCACACGGGCG-GTGTGA
66094740 CCACACGGGC-GTGTGA
1 CCACACGGGCGGTGTGA
66094756 CC
1 CC
66094758 CTGTTTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.17, C:0.33, G:0.36, T:0.14
Consensus pattern (17 bp):
CCACACGGGCGGTGTGA
Found at i:66097280 original size:65 final size:65
Alignment explanation
Indices: 66097151--66097285 Score: 216
Period size: 65 Copynumber: 2.1 Consensus size: 65
66097141 ATGCTAGACA
* * *
66097151 GTGTGAAATCTAAGGGGGTTACTGACTTGGGTCACATGGCTGACCACAGGTCCATATGCTAGCCC
1 GTGTGAAATCTAAGGGGGTTACTAACTTGGGTCACACGGCTGACCACAGGTCCATATGCCAGCCC
* * *
66097216 GTGTGAAATCTAATGGGGTTACTAACTTGGGTCACACGGCTGACCACATGTCCATGTGCCAGCCC
1 GTGTGAAATCTAAGGGGGTTACTAACTTGGGTCACACGGCTGACCACAGGTCCATATGCCAGCCC
66097281 GTGTG
1 GTGTG
66097286 CCACTCACGA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (65 bp):
GTGTGAAATCTAAGGGGGTTACTAACTTGGGTCACACGGCTGACCACAGGTCCATATGCCAGCCC
Found at i:66097314 original size:30 final size:30
Alignment explanation
Indices: 66097277--66097345 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
66097267 CCATGTGCCA
*
66097277 GCCCGTGTGCCACTCACGACCAATAGACAC
1 GCCCGTGTGCCACACACGACCAATAGACAC
* * * *
66097307 GCTCGTGTGCCACACACGGCCAGTAGACAT
1 GCCCGTGTGCCACACACGACCAATAGACAC
66097337 GCCCGTGTG
1 GCCCGTGTG
66097346 TCTAGGCTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.36, G:0.26, T:0.16
Consensus pattern (30 bp):
GCCCGTGTGCCACACACGACCAATAGACAC
Found at i:66099382 original size:29 final size:29
Alignment explanation
Indices: 66099350--66099409 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
66099340 GATTTTGAGT
* *
66099350 AAAAGTGCATATT-AGGGATTAAATTGTG
1 AAAAATGCAAATTGAGGGATTAAATTGTG
* *
66099378 AAAAATGTAAATTGAGGGGTTAAATTGTG
1 AAAAATGCAAATTGAGGGATTAAATTGTG
66099407 AAA
1 AAA
66099410 TAAATGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.30
Consensus pattern (29 bp):
AAAAATGCAAATTGAGGGATTAAATTGTG
Found at i:66099972 original size:32 final size:32
Alignment explanation
Indices: 66099936--66100001 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
66099926 GTACGATATT
66099936 GTTATAGCTTCGGCTAAACATTTATGCACTAA
1 GTTATAGCTTCGGCTAAACATTTATGCACTAA
66099968 GTTATAGCTTCGGCTAAACATTTATGCACTAA
1 GTTATAGCTTCGGCTAAACATTTATGCACTAA
66100000 GT
1 GT
66100002 GTGCGAGTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (32 bp):
GTTATAGCTTCGGCTAAACATTTATGCACTAA
Found at i:66102240 original size:31 final size:31
Alignment explanation
Indices: 66102202--66102263 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
66102192 TCAACAGCCC
66102202 GGTGACTTAAATAAAAACTTTTAAATAGTTT
1 GGTGACTTAAATAAAAACTTTTAAATAGTTT
* *
66102233 GGTGACTTAAATGAAAACTTTTGAATAGTTT
1 GGTGACTTAAATAAAAACTTTTAAATAGTTT
66102264 AATGATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (31 bp):
GGTGACTTAAATAAAAACTTTTAAATAGTTT
Found at i:66105149 original size:43 final size:41
Alignment explanation
Indices: 66105058--66105149 Score: 96
Period size: 43 Copynumber: 2.2 Consensus size: 41
66105048 CATAAGCTTG
* * * *
66105058 TACAATGCCATATCTCAGATATGGTCTTACATGTTATCACA
1 TACAATGCCATATCTCAGACAGGGTCTTACACGTAATCACA
*
66105099 TATCAATGCCACTATC-CTAGACAGGGTCTTACACGTAATCTCAA
1 TA-CAATGCCA-TATCTC-AGACAGGGTCTTACACGTAATCAC-A
66105143 TACAATG
1 TACAATG
66105150 ACAATGTCCC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
41 2 0.05
42 9 0.21
43 28 0.67
44 3 0.07
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (41 bp):
TACAATGCCATATCTCAGACAGGGTCTTACACGTAATCACA
Found at i:66106518 original size:35 final size:35
Alignment explanation
Indices: 66106474--66106541 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
66106464 AAGGTATGTG
*
66106474 ATATATATGTGTGCATGAATGATATACTGATAAAT
1 ATATATATGTGTGCATGAATGATATACTAATAAAT
**
66106509 ATATATATGTGTGTGTGAATGATATACTAATAA
1 ATATATATGTGTGCATGAATGATATACTAATAA
66106542 TTATGATGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (35 bp):
ATATATATGTGTGCATGAATGATATACTAATAAAT
Found at i:66107825 original size:32 final size:32
Alignment explanation
Indices: 66107789--66107861 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
66107779 GCCCTTAGGG
*
66107789 GCCCACATGCCCAACTTGGCCTATCCCGTGTA
1 GCCCACACGCCCAACTTGGCCTATCCCGTGTA
66107821 GCCCACACGCCCAACTTGGCCTATCCCGTGTA
1 GCCCACACGCCCAACTTGGCCTATCCCGTGTA
*
66107853 GCCTACACG
1 GCCCACACG
66107862 GCCACACTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.19
Consensus pattern (32 bp):
GCCCACACGCCCAACTTGGCCTATCCCGTGTA
Found at i:66110389 original size:42 final size:42
Alignment explanation
Indices: 66110326--66110479 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
66110316 CAAAACTATG
* *
66110326 TGTAAGACCATATCTGAGATATGGCATC-ATTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATCTCA
* * *
66110368 TGTAAGACCATATCTGGGATATAGTATCGATATGAGATCTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTCA
* * * * *
66110410 TGTAAGACCATAGT-TGGGCTGTTGGCATCGAAACGAGATCACA
1 TGTAAGACCATA-TCTGGGAT-ATGGCATCGATATGAGATCTCA
*
66110453 TATAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
66110480 TGGTGTGGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 59 0.64
43 33 0.36
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTCA
Found at i:66112978 original size:44 final size:42
Alignment explanation
Indices: 66112928--66113041 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 42
66112918 TGTGTTATCG
*
66112928 TGTAAGACCACGTTTGGGACATTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATTT-CA
* * ** *
66112972 TGTAAGACCACATCTAGGATGTTGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTCA
*
66113014 TGTAAGACC-CTGTCTGGGACAGTGGCAT
1 TGTAAGACCAC-GTCTGGGACATTGGCAT
66113042 TGTAACACCC
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.02
42 22 0.39
43 6 0.11
44 27 0.47
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTCA
Found at i:66116716 original size:18 final size:18
Alignment explanation
Indices: 66116695--66116731 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
66116685 CTTATGGTTG
66116695 GATTTTAGTATATGATAT
1 GATTTTAGTATATGATAT
66116713 GATTTTAGTATATGATAT
1 GATTTTAGTATATGATAT
66116731 G
1 G
66116732 TGATGCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (18 bp):
GATTTTAGTATATGATAT
Found at i:66129610 original size:42 final size:42
Alignment explanation
Indices: 66129551--66129705 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 42
66129541 TCAAAACTAT
*
66129551 GTGTAAGACCATATCTGGGATATGGCATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATCTC
* *
66129593 GTGTAAGACCATATCTGGGAGATGGCATCGATATGAGATGTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTC
* * * *
66129635 GTGTAATACCATAGT-TGGGATATTGGCGTCGAAATGAGATCCC
1 GTGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATCTC
* * *
66129678 ATATAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
66129706 TAGTGTGGCA
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 62 0.65
43 34 0.35
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTC
Found at i:66133980 original size:5 final size:6
Alignment explanation
Indices: 66133967--66134014 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
66133957 ATAATTTAAT
*
66133967 AAATAA AAATAA AAATCTAA AACAAAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AA-ATAA AAATAA AAATAA AAATAA AAA
66134015 ATATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
6 27 0.73
7 4 0.11
8 5 0.14
9 1 0.03
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:66134956 original size:130 final size:130
Alignment explanation
Indices: 66134658--66135047 Score: 412
Period size: 130 Copynumber: 3.0 Consensus size: 130
66134648 ATTTGGAGAA
* * ** * * *
66134658 CATGAGTGAAATTCTAAAGGAATATTCGGTTATTTTGAACAAAC-AGGAGATCGTAACCCAGCAT
1 CATGAGTGAAAATCCAAAGGAATATTCAATTATTTTGAACAAACGA-GAAATCGCAACCCAGAAT
* * * ** *
66134722 GATAGGGCATGATTCCCCGAATCGCCAAACATCGAACATTACCTTCGTTTTGGAGAAAATTTTTA
65 GATAGGGCACGATT-CCCGAATTGCCAAACACCGAGTATCACCTTCGTTTTGGAG-AAATTTTTA
66134787 AAG
128 AAG
*
66134790 CATGTGTG-AAATCCCAAAGGAATATTCAATTATTTTGAACAAACGAGAAATCGCAACCCAGAAT
1 CATGAGTGAAAAT-CCAAAGGAATATTCAATTATTTTGAACAAACGAGAAATCGCAACCCAGAAT
* ** *
66134854 GATAGGGTACGATTCTTGAATTGCCAAACACCGAGTATCACCTTCGTTTTAGG-G-GATTTTTAA
65 GATAGGGCACGATTCCCGAATTGCCAAACACCGAGTATCACCTTCGTTTT-GGAGAAATTTTT-A
66134917 AAG
128 AAG
* * * * ** *
66134920 CATGAGTGAAAATCCAAAGGAATATTCAATTGTTTTGAACAAATGAGAAATCACAATCCATTACG
1 CATGAGTGAAAATCCAAAGGAATATTCAATTATTTTGAACAAACGAGAAATCGCAACCCAGAATG
* ** * **
66134985 ATAGGGCACAATTCCCGAATTGCCAAACACCGAGTATTGCCTCCGTTTTAAAG-AATTTTTAAA
66 ATAGGGCACGATTCCCGAATTGCCAAACACCGAGTATCACCTTCGTTTTGGAGAAATTTTTAAA
66135048 TGAATAATTA
Statistics
Matches: 216, Mismatches: 36, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
129 9 0.04
130 105 0.49
131 37 0.17
132 64 0.30
133 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (130 bp):
CATGAGTGAAAATCCAAAGGAATATTCAATTATTTTGAACAAACGAGAAATCGCAACCCAGAATG
ATAGGGCACGATTCCCGAATTGCCAAACACCGAGTATCACCTTCGTTTTGGAGAAATTTTTAAAG
Found at i:66141224 original size:130 final size:129
Alignment explanation
Indices: 66140930--66141319 Score: 412
Period size: 130 Copynumber: 3.0 Consensus size: 129
66140920 ATTTGGAGAA
* * ** * * *
66140930 CATGAGTGAAATTCTAAAGGAATATTCGGCTATTTTGAACAAAC-AGGAGATCGTAACCCAGCAC
1 CATGAGTGAAAATCCAAAGGAATATTCGATTGTTTTGAACAAACGA-GAAATCGCAA-CCAGCAC
* * ** *
66140994 GATAGGGCACGATTCCCCGAATCGCCAAACATCGAACATTACCTTCGTTTTGGAGAAAATTTTTA
64 GATAGGGCACGATT-CCCGAATTGCCAAACACCGAGTATCACCTTCGTTTTGGAG-AAATTTTTA
66141059 AAG
127 AAG
*
66141062 CATGTGTG-AAATCCCAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCTAGCAC
1 CATGAGTGAAAAT-CCAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACC-AGCAC
** *
66141126 GATAGGGCACGATTCTTGAATTGCCAAACACCGAGTATCACCTTCGTTTTAGG-G-GATTTTTAA
64 GATAGGGCACGATTCCCGAATTGCCAAACACCGAGTATCACCTTCGTTTT-GGAGAAATTTTT-A
66141189 AAG
127 AAG
* * * **
66141192 CATGAGTGAAAATCCAAAGGAATATTCAATTGTTTTGAACAAATGAGAAATCACAATCCATTACG
1 CATGAGTGAAAATCCAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAA-CCAGCACG
* * ** * **
66141257 ATATGGCGCGATTCCCGAATTGCCAAACACCGAGTATTGCCTCCGTTTTAAAG-AATTTTTAAA
65 ATAGGGCACGATTCCCGAATTGCCAAACACCGAGTATCACCTTCGTTTTGGAGAAATTTTTAAA
66141320 TGAATAATTA
Statistics
Matches: 218, Mismatches: 32, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
129 9 0.04
130 104 0.48
131 41 0.19
132 63 0.29
133 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (129 bp):
CATGAGTGAAAATCCAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCAGCACGA
TAGGGCACGATTCCCGAATTGCCAAACACCGAGTATCACCTTCGTTTTGGAGAAATTTTTAAAG
Found at i:66144632 original size:132 final size:133
Alignment explanation
Indices: 66144383--66144654 Score: 447
Period size: 132 Copynumber: 2.1 Consensus size: 133
66144373 ACTGGAGACG
*
66144383 AGATCTGCAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGC
1 AGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGC
* * *
66144448 TTCACTGCAACTTCAGGAAGACAAGATCCGCCGTCCTCGATCTGCTCCACTGCAACTTCAGGGAA
66 TTCACTACAACTTCAGGAAGACAAGATCCACCGTCCTCGATCTGCTCCACTGCAACTTCAAGGAA
66144513 ACA
131 ACA
* *
66144516 AGATCTACAAT-TTCAGCCTACTCCACTACAACTTTAGGGAGATAGGGTGGTGGGTTAAATCTGC
1 AGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGC
* * * *
66144580 TTCACTACAACTTCAGGAAGACAAGATTCACCGTCTTCGATTTTCTCCACTGCAACTTCAAGGAA
66 TTCACTACAACTTCAGGAAGACAAGATCCACCGTCCTCGATCTGCTCCACTGCAACTTCAAGGAA
66144645 ACA
131 ACA
66144648 AGATCTA
1 AGATCTA
66144655 TAGAATCGGT
Statistics
Matches: 129, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
132 119 0.92
133 10 0.08
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (133 bp):
AGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGC
TTCACTACAACTTCAGGAAGACAAGATCCACCGTCCTCGATCTGCTCCACTGCAACTTCAAGGAA
ACA
Found at i:66156093 original size:130 final size:130
Alignment explanation
Indices: 66155783--66156172 Score: 454
Period size: 130 Copynumber: 3.0 Consensus size: 130
66155773 ATTTGGAGAA
* ** * *
66155783 CATGAGT-AAAATTCTAAAGGAATATTCGGCTATTTTGAACAAACAGGAGATCGCAACCCAGCAC
1 CATGAGTGAAAA-TCCAAAGGAATATTCGATTATTTTGAACAAAGA-GAAATCGCAACCCAGCAC
** * * **
66155847 GATAGGGCACGATTCCCCAAATCGCCAAACATCGAACATTACCTTCGTTTT-GGAGAAAATTTTT
64 GATAGGGCACGATT-CCTGAATTGCCAAACACCGAGTATTACCTTCGTTTTAGGAG-AAATTTTT
66155911 AAAG
127 AAAG
* * *
66155915 CAT-ATGTG-AAATCCCAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCTAGCG
1 CATGA-GTGAAAAT-CCAAAGGAATATTCGATTATTTTGAACAAA-GAGAAATCGCAACCCAGCA
* * *
66155978 CGATAGGGCACGATTCTTGAATTGCCAAACACCGAGTATCACCTTCGTTTTAGG-G-GATTTTTA
63 CGATAGGGCACGATTCCTGAATTGCCAAACACCGAGTATTACCTTCGTTTTAGGAGAAATTTTTA
66156041 AACG
128 AA-G
*
66156045 CATGAGTGAAAATCCAAAGGAATATTCGATTTTTTTGAACAAATGAGAAATCGCAACCCAGCACG
1 CATGAGTGAAAATCCAAAGGAATATTCGATTATTTTGAACAAA-GAGAAATCGCAACCCAGCACG
* * *
66156110 ATAGGGCACGATTCCTGAATTGCAAAACACCGAGTATTGCCTTCGTTTTA-AAG-AATTTTTAAA
65 ATAGGGCACGATTCCTGAATTGCCAAACACCGAGTATTACCTTCGTTTTAGGAGAAATTTTTAAA
66156173 TCAATAATTA
Statistics
Matches: 222, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
129 9 0.04
130 111 0.50
131 36 0.16
132 65 0.29
133 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (130 bp):
CATGAGTGAAAATCCAAAGGAATATTCGATTATTTTGAACAAAGAGAAATCGCAACCCAGCACGA
TAGGGCACGATTCCTGAATTGCCAAACACCGAGTATTACCTTCGTTTTAGGAGAAATTTTTAAAG
Found at i:66158938 original size:47 final size:47
Alignment explanation
Indices: 66158872--66159110 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
66158862 GAAATGATAG
66158872 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66158919 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66158966 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66159013 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
66159060 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66159107 TAAG
1 TAAG
66159111 TCCCGAAGGG
Statistics
Matches: 177, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:66159285 original size:37 final size:37
Alignment explanation
Indices: 66159229--66159307 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66159219 CCGAGCTCTA
* *
66159229 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66159266 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66159303 AAGAC
1 AAGAC
66159308 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66161208 original size:43 final size:43
Alignment explanation
Indices: 66161160--66161262 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
66161150 TTGGTTTTCA
66161160 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
66161203 GCACTAAGTGTGCGGGCAATAAGTGTTTACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
66161246 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
66161263 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:66161279 original size:29 final size:29
Alignment explanation
Indices: 66161244--66161317 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
66161234 GTTGTGAGAT
* *
66161244 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
66161273 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
66161302 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
66161318 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:66161755 original size:40 final size:40
Alignment explanation
Indices: 66161632--66161827 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
66161622 TCGAATGATG
** *
66161632 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
66161672 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
66161712 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
66161752 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
66161792 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
66161828 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:66161768 original size:80 final size:81
Alignment explanation
Indices: 66161632--66161828 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
66161622 TCGAATGATG
**
66161632 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
66161694 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
66161712 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
66161776 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
66161792 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
66161829 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:66165296 original size:47 final size:47
Alignment explanation
Indices: 66165230--66165468 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
66165220 GAAATGATAG
66165230 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66165277 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66165324 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66165371 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
66165418 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66165465 TAAG
1 TAAG
66165469 TCCCGAAGGG
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 175 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:66165643 original size:37 final size:37
Alignment explanation
Indices: 66165587--66165665 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66165577 CCGAGCTCTA
* *
66165587 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66165624 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66165661 AAGAC
1 AAGAC
66165666 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66167938 original size:40 final size:40
Alignment explanation
Indices: 66167879--66168106 Score: 384
Period size: 40 Copynumber: 5.7 Consensus size: 40
66167869 GAGCATTGGA
*
66167879 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
66167919 ATATATCCGGGCTATGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
66167959 ATATGTCTGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
66167999 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
66168039 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
66168079 ATATATCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
66168107 ATGTGTTTGC
Statistics
Matches: 180, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:66173006 original size:16 final size:16
Alignment explanation
Indices: 66172985--66173015 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66172975 TTATTATTTA
*
66172985 TTTATTGTTTTGTTTT
1 TTTATTATTTTGTTTT
66173001 TTTATTATTTTGTTT
1 TTTATTATTTTGTTT
66173016 GTAACAGGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.81
Consensus pattern (16 bp):
TTTATTATTTTGTTTT
Found at i:66173065 original size:9 final size:9
Alignment explanation
Indices: 66173051--66173082 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
66173041 ACTACACGGG
66173051 TAATTCGGT
1 TAATTCGGT
*
66173060 TAATTCGAT
1 TAATTCGGT
66173069 TAATTCGGT
1 TAATTCGGT
66173078 TAATT
1 TAATT
66173083 TTATACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:66187299 original size:21 final size:21
Alignment explanation
Indices: 66187224--66187299 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
66187214 TTGTAACAGA
*
66187224 TACAAATCATGCTTATCATAT
1 TACAAATCATACTTATCATAT
* *
66187245 TACAGATCATACATATCATAT
1 TACAAATCATACTTATCATAT
** * *
66187266 TACAGTTTATACTTATCACAT
1 TACAAATCATACTTATCATAT
*
66187287 TTCAAATCATACT
1 TACAAATCATACT
66187300 AAGCAGACAA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (21 bp):
TACAAATCATACTTATCATAT
Found at i:66204339 original size:47 final size:47
Alignment explanation
Indices: 66204276--66204545 Score: 495
Period size: 47 Copynumber: 5.7 Consensus size: 47
66204266 ATGATAGTAT
66204276 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66204323 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
66204370 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66204417 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
66204464 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
66204513 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
66204546 CCCGAAGGGC
Statistics
Matches: 217, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
47 172 0.79
49 41 0.19
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:66204723 original size:37 final size:37
Alignment explanation
Indices: 66204663--66204741 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
66204653 CCGAGCTCTA
* * * *
66204663 AAGATCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
*
66204700 AAGACCCGATAACTTCGTATGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
66204737 AAGAC
1 AAGAC
66204742 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
Found at i:66206476 original size:29 final size:30
Alignment explanation
Indices: 66206421--66206483 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
66206411 AATTCAAAGG
* *
66206421 AATTTATAAAATTTATAAAATAAATATATA
1 AATTTATAAAAATTATAAAATAAATATAAA
66206451 AATTT-TAAAAATT-TAAAATAATATATAAA
1 AATTTATAAAAATTATAAAATAA-ATATAAA
66206480 AATT
1 AATT
66206484 GAAAATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 8 0.27
29 17 0.57
30 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (30 bp):
AATTTATAAAAATTATAAAATAAATATAAA
Found at i:66206488 original size:27 final size:28
Alignment explanation
Indices: 66206427--66206491 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
66206417 AAGGAATTTA
* **
66206427 TAAAATTTATAAAATAAATATATAAATTT
1 TAAAAATT-TAAAATAAATATATAAAAAT
66206456 TAAAAATTTAAAAT-AATATATAAAAAT
1 TAAAAATTTAAAATAAATATATAAAAAT
*
66206483 TGAAAATTT
1 TAAAAATTT
66206492 TATAAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 19 0.59
28 6 0.19
29 7 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (28 bp):
TAAAAATTTAAAATAAATATATAAAAAT
Found at i:66206488 original size:28 final size:27
Alignment explanation
Indices: 66206436--66206508 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
66206426 ATAAAATTTA
* *
66206436 TAAAATAAATATATAAATTTTAAAAATT
1 TAAAATAAATATA-AAAATTGAAAAATT
*
66206464 TAAAATAATATATAAAAATTGAAAATTT
1 TAAAATAA-ATATAAAAATTGAAAAATT
*
66206492 TATAA-AAAT-TAAAAATT
1 TAAAATAAATATAAAAATT
66206509 TTATTTAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.20
26 2 0.05
27 2 0.05
28 23 0.57
29 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (27 bp):
TAAAATAAATATAAAAATTGAAAAATT
Found at i:66206497 original size:18 final size:18
Alignment explanation
Indices: 66206450--66206512 Score: 74
Period size: 18 Copynumber: 3.5 Consensus size: 18
66206440 ATAAATATAT
*
66206450 AAATTTTA-AAAATTTAA
1 AAATTTTATAAAAATTAA
* * *
66206467 AATAATATATAAAAATTGA
1 AA-ATTTTATAAAAATTAA
66206486 AAATTTTATAAAAATTAA
1 AAATTTTATAAAAATTAA
66206504 AAATTTTAT
1 AAATTTTAT
66206513 TTAGATTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
17 2 0.05
18 26 0.70
19 9 0.24
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
AAATTTTATAAAAATTAA
Found at i:66208941 original size:38 final size:37
Alignment explanation
Indices: 66208850--66208943 Score: 111
Period size: 37 Copynumber: 2.5 Consensus size: 37
66208840 ATTTTAATTA
* ** *
66208850 AGGT-TTTAATGTGTCTTTGTTTAGTACAAATTAAAT
1 AGGTGTTTAATGTGTCTTAGTGAAGTACAAATTAAAG
*
66208886 AGGTGTTTAATGTGTCTTAGTGAAGTACATATTAAAG
1 AGGTGTTTAATGTGTCTTAGTGAAGTACAAATTAAAG
66208923 A-GTCGTCTTAATGTGTCTTAG
1 AGGT-GT-TTAATGTGTCTTAG
66208944 CTTAAGAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
36 6 0.12
37 30 0.60
38 14 0.28
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (37 bp):
AGGTGTTTAATGTGTCTTAGTGAAGTACAAATTAAAG
Found at i:66214926 original size:21 final size:21
Alignment explanation
Indices: 66214902--66214949 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
66214892 GTGGTCCAAG
66214902 GGACACGCCCGTGTAACCCTA
1 GGACACGCCCGTGTAACCCTA
* *
66214923 GGACACGCTCGTGTGACCCTA
1 GGACACGCCCGTGTAACCCTA
66214944 GGACAC
1 GGACAC
66214950 ACCCTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.35, G:0.27, T:0.15
Consensus pattern (21 bp):
GGACACGCCCGTGTAACCCTA
Found at i:66222277 original size:43 final size:42
Alignment explanation
Indices: 66222230--66222386 Score: 127
Period size: 42 Copynumber: 3.7 Consensus size: 42
66222220 AACATATACA
*
66222230 ATGCCAACGTCCCAGACATGGTCTTACATGTAATTAAACATCG
1 ATGCCAACATCCCAGACATGGTCTTACATGTAATTAAA-ATCG
** * * *
66222273 ATGCCATTATCCCAGACAGGGTCTTACATG-AAATCAAATACG
1 ATGCCAACATCCCAGACATGGTCTTACATGTAATTAAAAT-CG
* ** ** * * *
66222315 ATTCTGATGTCCCAGACATGGTCTTACACGTAAAATAGAAGTCG
1 ATGCCAACATCCCAGACATGGTCTTACATGT-AATTA-AAATCG
* *
66222359 ATGCTAACATCCCAGACGTGGTCTTACA
1 ATGCCAACATCCCAGACATGGTCTTACA
66222387 CGAAATCCTA
Statistics
Matches: 90, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 26 0.29
44 29 0.32
45 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACATCCCAGACATGGTCTTACATGTAATTAAAATCG
Found at i:66222338 original size:42 final size:43
Alignment explanation
Indices: 66222238--66222342 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
66222228 CAATGCCAAC
* *
66222238 GTCCCAGACATGGTCTTACATGTAATTAAACATCGATGCCATT
1 GTCCCAGACATGGTCTTACATGAAATCAAACATCGATGCCATT
* * * * *
66222281 ATCCCAGACAGGGTCTTACATGAAATCAAATA-CGATTCTGA-T
1 GTCCCAGACATGGTCTTACATGAAATCAAACATCGATGC-CATT
66222323 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
66222343 CGTAAAATAG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 24 0.46
43 28 0.54
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGAAATCAAACATCGATGCCATT
Found at i:66226520 original size:30 final size:30
Alignment explanation
Indices: 66226474--66226533 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
66226464 TTCCTGAGCC
66226474 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
66226504 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
66226534 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:66228841 original size:18 final size:18
Alignment explanation
Indices: 66228818--66228861 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 18
66228808 TTGAGATTTG
66228818 GATAATTACTAGAAATGT
1 GATAATTACTAGAAATGT
66228836 GAT-A--A-TAGAAATGT
1 GATAATTACTAGAAATGT
66228850 GATAATTACTAG
1 GATAATTACTAG
66228862 GAATTGTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
14 12 0.55
15 2 0.09
17 2 0.09
18 6 0.27
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (18 bp):
GATAATTACTAGAAATGT
Found at i:66231062 original size:31 final size:31
Alignment explanation
Indices: 66231014--66231097 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
66231004 TTAGTCTTGA
*
66231014 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
66231044 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
66231075 CATATCATTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
66231098 ACTATAAACG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:66231407 original size:26 final size:26
Alignment explanation
Indices: 66231290--66231426 Score: 183
Period size: 26 Copynumber: 5.3 Consensus size: 26
66231280 CTGGAGGCCT
66231290 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
66231314 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
66231339 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
66231365 AGCCCTTTTTCGGTAAACTGGGGCATA
1 AGCCC-TTTTCAATAAACTGGGGCATA
66231392 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
66231418 AGCCCTTTT
1 AGCCCTTTT
66231427 TGCACTTCCT
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 32 0.32
26 34 0.34
27 23 0.23
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:66231409 original size:53 final size:52
Alignment explanation
Indices: 66231290--66231427 Score: 221
Period size: 53 Copynumber: 2.7 Consensus size: 52
66231280 CTGGAGGCCT
66231290 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCC-TTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTTCGGTAAACTGGGGCAA
*
66231339 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTCGGTAAACTGGGGCA-A
66231392 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTT
66231428 GCACTTCCTC
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.11
51 6 0.07
52 19 0.23
53 36 0.44
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTCGGTAAACTGGGGCAA
Found at i:66232258 original size:27 final size:27
Alignment explanation
Indices: 66232228--66232319 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
66232218 GGGCACATTC
*
66232228 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCCTACAGGGGCT-TTACG
*
66232255 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCCTACAGGGGCTTTACG
* *
66232282 GTC-TCTTTACCCTAAAGGGGCTTTACA
1 GTCAT-TTTACCCTACAGGGGCTTTACG
*
66232309 GTCTTTTTACC
1 GTCATTTTACC
66232320 TAATAGGGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 55 0.96
28 2 0.04
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCTTTACG
Found at i:66232477 original size:27 final size:26
Alignment explanation
Indices: 66232433--66232629 Score: 118
Period size: 27 Copynumber: 7.3 Consensus size: 26
66232423 TTTTAGAAAG
66232433 TCAAGGGTATTTCT-GTAACTTTGTAAA
1 TCAAGGGTATTT-TGGTAA-TTTGTAAA
*
66232460 TCAGGGGTATTTTGGTAATTT-TACAAA
1 TCAAGGGTATTTTGGTAATTTGT--AAA
* * **
66232487 TTAAGGGTATTTCGGTAATTTCACAAA
1 TCAAGGGTATTTTGGTAATTT-GTAAA
* * *
66232514 CCAAGGGTATTTTAGCAATTT-TACAGA
1 TCAAGGGTATTTTGGTAATTTGTA-A-A
* * *
66232541 -CTAGGGTATTATGGTAATTT-TACTGA
1 TCAAGGGTATTTTGGTAATTTGTA--AA
*
66232567 TCGAGGGTATTTTGGTAATTTTGTAAA
1 TCAAGGGTATTTTGGTAA-TTTGTAAA
*
66232594 -CTAAGGGTATTTTAGTAACTTTGTAAA
1 TC-AAGGGTATTTTGGTAA-TTTGTAAA
*
66232621 TCGAGGGTA
1 TCAAGGGTA
66232630 AAACAATAAT
Statistics
Matches: 133, Mismatches: 24, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
25 2 0.02
26 25 0.19
27 100 0.75
28 4 0.03
29 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
TCAAGGGTATTTTGGTAATTTGTAAA
Found at i:66232522 original size:54 final size:54
Alignment explanation
Indices: 66232350--66232615 Score: 178
Period size: 54 Copynumber: 4.9 Consensus size: 54
66232340 TTTCATCCTA
* * * * * * **
66232350 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAACTTT-ACAAAC
* *** * * * ** *
66232405 CAATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAACTTTACAAAC
* *
66232461 CAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAA-TTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAACTTT-ACAAAC
* * * * ** *
66232515 CAAGGGTATTTTAGCAATTTTACAGACT-AGGGTATTAT-GGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATT-TCGGTAACTTTACAAAC
* ** **
66232568 CGAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAACTTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAACTTT
66232616 GTAAATCGAG
Statistics
Matches: 163, Mismatches: 41, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
53 42 0.26
54 60 0.37
55 21 0.13
56 22 0.13
57 18 0.11
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAACTTTACAAAC
Found at i:66232645 original size:27 final size:27
Alignment explanation
Indices: 66232615--66232737 Score: 183
Period size: 27 Copynumber: 4.6 Consensus size: 27
66232605 TTAGTAACTT
66232615 TGTAAATCGAGGGTAAAACAATAATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
**
66232642 TGTAAATAAAGGGTAAAACAATAATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
* **
66232669 TATAAATCGAGGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
*
66232696 TGTAAATCGAGGGTAAAACAGTAATTC
1 TGTAAATCGAGGGTAAAACAATAATTC
*
66232723 TATAAATCGAGGGTA
1 TGTAAATCGAGGGTA
66232738 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACAATAATTC
Found at i:66232774 original size:81 final size:80
Alignment explanation
Indices: 66232566--66232782 Score: 200
Period size: 81 Copynumber: 2.7 Consensus size: 80
66232556 AATTTTACTG
* * * * *
66232566 ATCGAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAACTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAA-TTTGTAAATCGAGGGTAA
*
66232631 AACAATAATTCTGTAA
65 AACAATAATTCTATAA
** ***** * * *** *
66232647 ATAAAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATT-TGTAAATCGAGGGTAA
*
66232712 AACAGTAATTCTATAA
65 AACAATAATTCTATAA
* * *
66232728 ATCGAGGGTACTTTGGTAATTTTACAATTTGAGGGTATTTCAGTAATTTGGTAAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTT-GTAAA
66232783 CTAAAGTATT
Statistics
Matches: 98, Mismatches: 36, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
80 3 0.03
81 95 0.97
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (80 bp):
ATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTTGTAAATCGAGGGTAAA
ACAATAATTCTATAA
Found at i:66239831 original size:17 final size:18
Alignment explanation
Indices: 66239800--66239841 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
66239790 GACGAATATG
66239800 TCAACCACAATCATTATA-
1 TCAACCACAATCATT-TAC
66239818 TCAACCAC-ATCATTTAC
1 TCAACCACAATCATTTAC
66239835 TCAACCA
1 TCAACCA
66239842 TGTAAACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 13 0.57
18 8 0.35
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.26
Consensus pattern (18 bp):
TCAACCACAATCATTTAC
Found at i:66240682 original size:41 final size:43
Alignment explanation
Indices: 66240614--66240729 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 43
66240604 ATATCGGTAA
* * * * *
66240614 ATCGATGCCATTGTCCCAAATAGGGTCTTACAC-GAATCAAAT
1 ATCGATGCCAATGTCCTAGACATGGTCTTACACAGAATCAAAT
** * *
66240656 A-CGATGCTGATGTACC-AGACATGGTCTTACACATAATCACAT
1 ATCGATGCCAATGT-CCTAGACATGGTCTTACACAGAATCAAAT
*
66240698 ATCGATGCCAATGTCCTAGACGTGGTCTTACA
1 ATCGATGCCAATGTCCTAGACATGGTCTTACA
66240730 TGAGAACACA
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 22 0.37
42 13 0.22
43 24 0.41
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATCGATGCCAATGTCCTAGACATGGTCTTACACAGAATCAAAT
Found at i:66244496 original size:46 final size:46
Alignment explanation
Indices: 66244446--66244618 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
66244436 TGGTTGAGCA
66244446 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * * *
66244492 TCCGAACTCGTTGAGTGGAGTCCGAGTTC-GTGAAATGTA-ACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ATG
*
66244539 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66244585 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66244619 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.64
47 35 0.34
48 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66244606 original size:93 final size:93
Alignment explanation
Indices: 66244445--66244613 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
66244435 ATGGTTGAGC
* *
66244445 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTGG
66244510 AGTCCGAGTTCGTGAAATGTAACTAGGT
66 AGTCCGAGTTCGTGAAATGTAACTAGGT
* *
66244538 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTGG
66244603 AGTCCGAGTTC
66 AGTCCGAGTTC
66244614 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTGG
AGTCCGAGTTCGTGAAATGTAACTAGGT
Found at i:66249173 original size:20 final size:21
Alignment explanation
Indices: 66249139--66249192 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
66249129 TGATGATATT
*
66249139 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
66249160 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
66249180 TTTTATTATTTTA
1 TTATATTATTTTA
66249193 TTATTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:66249191 original size:8 final size:8
Alignment explanation
Indices: 66249178--66249205 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
66249168 TTTAATGAGA
66249178 TATTTTAT
1 TATTTTAT
66249186 TATTTTAT
1 TATTTTAT
66249194 TATTTTAT
1 TATTTTAT
66249202 TATT
1 TATT
66249206 AATTATTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TATTTTAT
Found at i:66251389 original size:46 final size:46
Alignment explanation
Indices: 66251336--66251514 Score: 243
Period size: 46 Copynumber: 3.9 Consensus size: 46
66251326 GTGCTCTCTA
* *
66251336 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
66251382 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
** *
66251428 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * * * *
66251474 ACA-GAAAATGAGTAAGATCATAGTTGAAAGACACTATGGCA
1 ATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
66251515 TCATGTGAAA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 119 0.99
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:66262706 original size:21 final size:21
Alignment explanation
Indices: 66262682--66262751 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
66262672 TGATCTGAAC
66262682 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * **
66262703 TCA-TGATATATGTGGCATTTGAAA
1 TCATTGA-GT-TGTGG--TCTGAGT
*
66262727 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
66262748 TCAT
1 TCAT
66262752 GATATATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 12 0.34
22 5 0.14
23 4 0.11
24 8 0.23
25 3 0.09
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:66264400 original size:18 final size:19
Alignment explanation
Indices: 66264377--66264414 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
66264367 AGGACACGGC
*
66264377 CCCAAG-ACACTGGCGTGT
1 CCCAAGCACACGGGCGTGT
66264395 CCCAAGCCACACGGGCGTGT
1 CCCAAG-CACACGGGCGTGT
66264415 GTATGACCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.13
Consensus pattern (19 bp):
CCCAAGCACACGGGCGTGT
Found at i:66265738 original size:13 final size:13
Alignment explanation
Indices: 66265720--66265748 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
66265710 GGTTGTTTAT
66265720 TAAACTAATTAAC
1 TAAACTAATTAAC
66265733 TAAACTAATTAAC
1 TAAACTAATTAAC
66265746 TAA
1 TAA
66265749 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:66273873 original size:13 final size:13
Alignment explanation
Indices: 66273855--66273883 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
66273845 GGTTGTTTAT
66273855 TAAACTAATTAAC
1 TAAACTAATTAAC
66273868 TAAACTAATTAAC
1 TAAACTAATTAAC
66273881 TAA
1 TAA
66273884 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:66277531 original size:47 final size:45
Alignment explanation
Indices: 66277368--66277539 Score: 143
Period size: 44 Copynumber: 3.7 Consensus size: 45
66277358 ATATATTGTT
* *
66277368 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTATATGCG-TGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTT-T-T-CGAGGC
* * * * *
66277417 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTT--AGCC
1 -GATGCATGTCCCAGACATGTCTTACACTGGC-TATCTTTTCGAGGC
* * *
66277462 GATGCGTTTCCCAGACACGTCTTACACTGGCTATCTTTGTCGAGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTTT-TCGAGGC
*
66277508 GAATGCATGTCCCAGACATGTCTTACTCTGGC
1 G-ATGCATGTCCCAGACATGTCTTACACTGGC
66277540 ACTCATAATA
Statistics
Matches: 97, Mismatches: 19, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.04
44 28 0.29
45 1 0.01
46 4 0.04
47 27 0.28
48 13 0.13
49 16 0.16
50 4 0.04
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTTTTCGAGGC
Found at i:66285027 original size:44 final size:46
Alignment explanation
Indices: 66284972--66285230 Score: 126
Period size: 47 Copynumber: 5.6 Consensus size: 46
66284962 TATGCGTGCT
66284972 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CAACTCTGTCAGGCC
* * * * * * *
66285016 GATGCGTGTCCCAAACACGTATTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTC-AGGCC
* * * * *
66285063 GATGCCTGTCCCAGACATGTCTTACTCT-GGC-ACTCATAAT-ATGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCCAACTC-T-GTCA-GGCC
* * * * * *
66285109 GAAGCATGTTCCAGACATGTCTTACACTAGCTC-TCGTCTG-GATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CAAC-TCTGTCAGGCC
* * * *
66285155 GATGCCATGTCCTAGACATGGTCTCACACTAGCTCTTA-TAATGT--GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-C-AACT-CTGTCAGGCC
*
66285203 GAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
66285231 GGCGCACAAA
Statistics
Matches: 160, Mismatches: 38, Indels: 32
0.70 0.17 0.14
Matches are distributed among these distances:
43 5 0.03
44 27 0.17
45 4 0.03
46 43 0.27
47 54 0.34
48 23 0.14
49 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTCAGGCC
Found at i:66285217 original size:94 final size:92
Alignment explanation
Indices: 66284927--66285230 Score: 242
Period size: 93 Copynumber: 3.3 Consensus size: 92
66284917 TTACCGATGC
* * * *
66284927 CATGTCCCAGACATGGTCTTACACTAACTCTCATAT--ATGCGTGCTGATGCATGTCCCAGACAT
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTGGAT--GT-C-GATGCCTGTCCCAGACAT
* * * * *
66284990 GTCTTACACTAGCA--CA-ACTCTTAGCCGATG
61 GTCTCACACTAGCACTCATAAT-ATGGCCGAAG
* * * * * * * *
66285020 CGTGTCCCAAACACGTATTACACTGGCTATC-TCTGTCGAGGCCGATGCCTGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTG--GATGTCGATGCCTGTCCCAGACATGTC
* * * *
66285084 TTACTCTGGCACTCATAATATGGCTGAAG
64 TCACACTAGCACTCATAATATGGCCGAAG
* *
66285113 CATGTTCCAGACATGTCTTACACTAGCTCTCGTCTGGATGTCGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTGGATGTCGATGCC-TGTCCCAGACAT-GTC
* * *
66285178 TCACACTAGCTCTTATAATGTGGCCGAAG
64 TCACACTAGCACTCATAATATGGCCGAAG
66285207 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
66285231 GGCGCACAAA
Statistics
Matches: 165, Mismatches: 36, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
91 31 0.19
92 24 0.15
93 55 0.33
94 54 0.33
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTGGATGTCGATGCCTGTCCCAGACATGTCTC
ACACTAGCACTCATAATATGGCCGAAG
Found at i:66289338 original size:21 final size:21
Alignment explanation
Indices: 66289314--66289383 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
66289304 TGATCTGAAC
*
66289314 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTATGGTCTGAGT
* **
66289335 TCA-TGATATATATGGCATCTGAAC
1 TCATTGA-GT-TATGG--TCTGAGT
66289359 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTATGGTCTGAGT
66289380 TCAT
1 TCAT
66289384 GATGTATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.35
22 4 0.11
23 5 0.14
24 9 0.24
25 3 0.08
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTATGGTCTGAGT
Found at i:66292211 original size:19 final size:19
Alignment explanation
Indices: 66292155--66292212 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
66292145 TAACTGTATA
* *
66292155 AATAATTTATTATAAAATT
1 AATAATTTTTTTTAAAATT
* * *
66292174 TATAATTTTTATT--AGTT
1 AATAATTTTTTTTAAAATT
66292191 AATAATTTTTTTTAAAATT
1 AATAATTTTTTTTAAAATT
66292210 AAT
1 AAT
66292213 TAGTCTAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
17 14 0.48
19 15 0.52
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
AATAATTTTTTTTAAAATT
Found at i:66308324 original size:13 final size:13
Alignment explanation
Indices: 66308306--66308330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66308296 AATGACTTAC
66308306 TCTTGTGTCTCTT
1 TCTTGTGTCTCTT
66308319 TCTTGTGTCTCT
1 TCTTGTGTCTCT
66308331 AGCCTTAGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.16, T:0.60
Consensus pattern (13 bp):
TCTTGTGTCTCTT
Done.