Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 198 of 373
Found at i:66711033 original size:27 final size:27
Alignment explanation
Indices: 66710985--66711176 Score: 226
Period size: 27 Copynumber: 7.1 Consensus size: 27
66710975 GGGTAAAATG
* * * *
66710985 GTAATTTTACCCCACAAGGGTATCTTGA
1 GTAATTCTACCCTACAGGGGTAT-TTCA
* *
66711013 -TAATTCTACCTTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
66711039 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
66711066 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
66711093 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
66711120 GTTATTCTACCCTATAGTGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
66711147 GTAATTCTACCC-ACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
66711173 GTAA
1 GTAA
66711177 ATTTACAAAT
Statistics
Matches: 140, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 17 0.12
27 123 0.88
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:66711179 original size:27 final size:26
Alignment explanation
Indices: 66710985--66711202 Score: 183
Period size: 27 Copynumber: 8.1 Consensus size: 26
66710975 GGGTAAAATG
* *
66710985 GTAATTTTACCCCACAAGGGTATCTTGA
1 GTAATTCTA-CCCACAAGGGTAT-TTCA
*
66711013 -TAATTCTACCTTAC-AGAGGTATTTCA
1 GTAATTCTACC-CACAAG-GGTATTTCA
* *
66711039 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCC-ACAAGGGTATTTCA
* *
66711066 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACC-CACAAGGGTATTTCA
*
66711093 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCC-ACAAGGGTATTTCA
* * *
66711120 GTTATTCTACCCTA-TAGTGGTATTTTA
1 GTAATTCTACCC-ACAAG-GGTATTTCA
66711147 GTAATTCTACCCACAAGGGTATTTCA
1 GTAATTCTACCCACAAGGGTATTTCA
** *
66711173 GTAAATT-TACAAATCGAGGGTATTTCA
1 GT-AATTCTACCCA-CAAGGGTATTTCA
66711200 GTA
1 GTA
66711203 GTTTTGCAAA
Statistics
Matches: 160, Mismatches: 19, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
26 25 0.16
27 134 0.84
28 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (26 bp):
GTAATTCTACCCACAAGGGTATTTCA
Found at i:66711212 original size:27 final size:27
Alignment explanation
Indices: 66711162--66712024 Score: 800
Period size: 27 Copynumber: 32.7 Consensus size: 27
66711152 TCTACCCACA
*
66711162 AGGGTATTTCAGTAAATTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
66711189 AGGGTATTTCAGTAGTTTTGCAAA-CTA
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
66711216 AGGGTATTTCGGTGATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
66711243 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
66711269 ATGGTATTTC-GATAACTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * * *
66711296 GGGGTACTTT-GGTAATTTTTCAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* * *
66711323 AGGGTGTTTTAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
66711350 AGGGTATTTTAGTAATTTTA-TAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
66711376 ATAGTATTTCGGTAATTTTATAAAT--
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
66711401 TGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
66711428 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
66711455 AGGGTATTTCAGTAATTTTACAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
66711482 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
66711509 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
66711536 AGGGTATTTCAGTAATTTTGCAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
66711563 AGGG----T-AGTAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * * *
66711585 GGGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* * *
66711612 AGGGTGTTTTAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
66711639 AGGGTATTTTAGTAATTTTA-TAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
66711665 ATAGTATTTCGGTAATTTTATAAA-C-
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
66711690 TGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
66711717 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
66711744 AGGGTATTTCAGTAATTTTACAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
66711771 AGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
66711798 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
66711825 AGGGTATTTCAGTAATTTTGCAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
66711852 AGGG----T-AGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
66711874 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
66711901 AGGGTATTTTAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
66711928 AGGGTATTTCAGTAATTTTA-TAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
66711954 ACGGTATTT-AGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
66711980 GGGGTACTTT-GGTAA-TTTAC-GATTG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
66712005 GGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
66712025 GTAAACTAAA
Statistics
Matches: 686, Mismatches: 111, Indels: 79
0.78 0.13 0.09
Matches are distributed among these distances:
22 32 0.05
23 2 0.00
24 3 0.00
25 54 0.08
26 116 0.17
27 471 0.69
28 8 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:66711589 original size:22 final size:22
Alignment explanation
Indices: 66711546--66711590 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
66711536 AGGGTATTTC
* *
66711546 AGTAATTTTGCAAATTGAGGGT
1 AGTAATTTTACAAACTGAGGGT
* *
66711568 AGTAATTTTATAAACTGGGGGT
1 AGTAATTTTACAAACTGAGGGT
66711590 A
1 A
66711591 CTTTGGTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (22 bp):
AGTAATTTTACAAACTGAGGGT
Found at i:66711685 original size:289 final size:289
Alignment explanation
Indices: 66711162--66712024 Score: 1360
Period size: 289 Copynumber: 3.0 Consensus size: 289
66711152 TCTACCCACA
* * * *
66711162 AGGGTATTTCAGTAAATTTACAAA-TCGAGGGTATTTCAGTAGTTTTGCAAA-CTAAGGGTATTT
1 AGGGTATTTCAGTAATTTTACAAACT-GAGGGTATTTCGGTAATTTTACAAATC-AAGGGTATTT
* * * * * *
66711225 CGGTGATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCGATGGTATTTCGATAACTTTA
64 CAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTA----G-TAATTTTA
*
66711289 TAAACCGGGGGTACTTTGGTAATTTTTCAAGTCGAGGGTGTTTTAGTAATTTTACAAATTGAGGG
124 TAAACCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTGTTTTAGTAATTTTACAAATTGAGGG
*
66711354 TATTTTAGTAATTTTATAATCGATAGTATTTCGGTAATTTTATAAATTGGGTACTTTGGTAATTT
189 TATTTTAGTAATTTTATAATCGATAGTATTTCGGTAATTTTATAAACTGGGTACTTTGGTAATTT
66711419 TACAAGTCGAGGGTATTTCAGTAATTTTACAAATCG
254 TACAAGTCGAGGGTATTTCAGTAATTTTACAAATCG
*
66711455 AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCA
*
66711520 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTAGTAATTTTATAAACTG
66 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTAGTAATTTTATAAACCG
*
66711585 GGGGTACTTTGGTAATTTTACAAGTCAAGGGTGTTTTAGTAATTTTACAAATTGAGGGTATTTTA
131 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTGTTTTAGTAATTTTACAAATTGAGGGTATTTTA
*
66711650 GTAATTTTATAATTGATAGTATTTCGGTAATTTTATAAACTGGGTACTTTGGTAATTTTACAAGT
196 GTAATTTTATAATCGATAGTATTTCGGTAATTTTATAAACTGGGTACTTTGGTAATTTTACAAGT
66711715 CGAGGGTATTTCAGTAATTTTACAAATCG
261 CGAGGGTATTTCAGTAATTTTACAAATCG
66711744 AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCA
66711809 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTAGTAATTTTATAAACCG
66 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTAGTAATTTTATAAACCG
* * * *
66711874 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAAATCGAGGGTATTTCA
131 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTGTTTTAGTAATTTTACAAATTGAGGGTATTTTA
** * * *
66711939 GTAATTTTATAATCGACGGTATTT-AGTAATTTTATAAACCGGGGGTACTTTGGTAA-TTTACGA
196 GTAATTTTATAATCGATAGTATTTCGGTAATTTTATAAA-C-TGGGTACTTTGGTAATTTTACAA
* *
66712002 -TTGGGGGTATTTCAGTAATTTTA
259 GTCGAGGGTATTTCAGTAATTTTA
66712025 GTAAACTAAA
Statistics
Matches: 534, Mismatches: 31, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
288 34 0.06
289 384 0.72
290 15 0.03
293 90 0.17
294 11 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (289 bp):
AGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCA
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTAGTAATTTTATAAACCG
GGGGTACTTTGGTAATTTTACAAGTCGAGGGTGTTTTAGTAATTTTACAAATTGAGGGTATTTTA
GTAATTTTATAATCGATAGTATTTCGGTAATTTTATAAACTGGGTACTTTGGTAATTTTACAAGT
CGAGGGTATTTCAGTAATTTTACAAATCG
Found at i:66716124 original size:65 final size:65
Alignment explanation
Indices: 66716043--66716180 Score: 258
Period size: 65 Copynumber: 2.1 Consensus size: 65
66716033 GAAATGGCCA
*
66716043 CACACGCCCGTGTGTCAGGCCATGCCAAAACTGTAGGGTACACTGACTTATCAACACGGCCAAGT
1 CACATGCCCGTGTGTCAGGCCATGCCAAAACTGTAGGGTACACTGACTTATCAACACGGCCAAGT
*
66716108 CACATGCCCGTGTGTCAGGCCATGTCAAAACTGTAGGGTACACTGACTTATCAACACGGCCAAGT
1 CACATGCCCGTGTGTCAGGCCATGCCAAAACTGTAGGGTACACTGACTTATCAACACGGCCAAGT
66716173 CACATGCC
1 CACATGCC
66716181 TGTATGCTAG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (65 bp):
CACATGCCCGTGTGTCAGGCCATGCCAAAACTGTAGGGTACACTGACTTATCAACACGGCCAAGT
Found at i:66716292 original size:13 final size:13
Alignment explanation
Indices: 66716274--66716306 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
66716264 ATCGTGTGTC
66716274 ACACACGAATGAG
1 ACACACGAATGAG
*
66716287 ACACACGACTGAG
1 ACACACGAATGAG
66716300 ACACACG
1 ACACACG
66716307 CCTTTGTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.30, G:0.21, T:0.06
Consensus pattern (13 bp):
ACACACGAATGAG
Found at i:66717247 original size:23 final size:23
Alignment explanation
Indices: 66717218--66717326 Score: 80
Period size: 23 Copynumber: 4.7 Consensus size: 23
66717208 TTGATGAACA
66717218 GTAAGCTCTATTGAGCTAAAATG
1 GTAAGCTCTATTGAGCTAAAATG
* * *
66717241 GTAAGCTCTATCGAGCTGAACT-
1 GTAAGCTCTATTGAGCTAAAATG
* * *
66717263 GTAGGCT-TATACGAGCTGAAATG
1 GTAAGCTCTAT-TGAGCTAAAATG
* * * *
66717286 ATAAGCTCCAATGAGCTGAAAATA
1 GTAAGCTCTATTGAGCT-AAAATG
66717310 GTAAGCTCT-TATGAGCT
1 GTAAGCTCTAT-TGAGCT
66717327 GATATATCGA
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.05
22 16 0.24
23 29 0.44
24 18 0.27
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTAAAATG
Found at i:66717314 original size:24 final size:24
Alignment explanation
Indices: 66717275--66717343 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
66717265 AGGCTTATAC
66717275 GAGCTG-AAATGATAAGCTCCAAT
1 GAGCTGAAAATGATAAGCTCCAAT
**
66717298 GAGCTGAAAAT-AGTAAGCTCTTAT
1 GAGCTGAAAATGA-TAAGCTCCAAT
*
66717322 GAGCTGATATATCGATAAGCTC
1 GAGCTGA-AAAT-GATAAGCTC
66717344 ATAGGAGCTG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
23 7 0.18
24 20 0.53
25 3 0.08
26 7 0.18
27 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (24 bp):
GAGCTGAAAATGATAAGCTCCAAT
Found at i:66721720 original size:16 final size:16
Alignment explanation
Indices: 66721701--66721731 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66721691 CTTCTTCACT
66721701 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
66721717 TACTTACTTACTTAA
1 TACTCACTTACTTAA
66721732 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:66721737 original size:20 final size:20
Alignment explanation
Indices: 66721698--66721737 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66721688 AAACTTCTTC
* *
66721698 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
66721718 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
66721738 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:66722105 original size:55 final size:53
Alignment explanation
Indices: 66721984--66722162 Score: 166
Period size: 55 Copynumber: 3.3 Consensus size: 53
66721974 TACCATTGCA
* *
66721984 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCACTGCCATGCCTTG
1 ACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* * * *
66722037 GCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTG
1 ACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTG
*** * * *
66722092 ACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTACCATACCTT-
1 ACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTTG
66722146 AGCATGGTCTTACATGG
1 A-CATGGTCTTACATGG
66722163 TATCACTGAA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 28 0.27
54 9 0.09
55 62 0.60
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
ACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
Found at i:66729292 original size:16 final size:16
Alignment explanation
Indices: 66729273--66729303 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66729263 CTTCTTCACT
66729273 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
66729289 TACTTACTTACTTAA
1 TACTCACTTACTTAA
66729304 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:66729309 original size:20 final size:20
Alignment explanation
Indices: 66729270--66729309 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66729260 AAACTTCTTC
* *
66729270 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
66729290 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
66729310 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:66729420 original size:23 final size:24
Alignment explanation
Indices: 66729379--66729426 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
66729369 ACCTTTACTC
*
66729379 TTCTAGCATGAACTTGTCTTACCT
1 TTCTAGCATGAACTCGTCTTACCT
*
66729403 TTCTAGTAT-AACTCGTCTTACCT
1 TTCTAGCATGAACTCGTCTTACCT
66729426 T
1 T
66729427 ACCTTCCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.44
Consensus pattern (24 bp):
TTCTAGCATGAACTCGTCTTACCT
Found at i:66729631 original size:53 final size:54
Alignment explanation
Indices: 66729494--66729744 Score: 234
Period size: 55 Copynumber: 4.7 Consensus size: 54
66729484 ACACGGGTAC
* * *
66729494 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
66729543 CTTACCATTGCCATGTCTTGACCTGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
66729596 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
66729651 CTTATCAATGCCATGTCTTGACCTGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
66729704 CCTTACCAATTGCCATACCTT-AGCATAGTCTTA-ATGGTATC
1 -CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATC
66729745 ATTGAACCCT
Statistics
Matches: 165, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
50 1 0.01
52 2 0.01
53 48 0.29
54 17 0.10
55 57 0.35
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:66729684 original size:55 final size:53
Alignment explanation
Indices: 66729494--66729719 Score: 205
Period size: 53 Copynumber: 4.3 Consensus size: 53
66729484 ACACGGGTAC
* * * * *
66729494 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACCTGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
66729543 CTTACCATTGCCATGTCTTGACCTGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACCTGGTCTTACATGGGATCCTTGCCTTATGAA
* * * *
66729596 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACCTGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
66729651 CTTATCAATGCCATGTCTTGACCTGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACCTGGTCTTACATGGGATCCTTGCCTTATG-AA
66729704 CCTTACCAATTGCCAT
1 -CTTACCAA-TGCCAT
66729720 ACCTTAGCAT
Statistics
Matches: 147, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
49 38 0.26
50 1 0.01
52 2 0.01
53 48 0.33
54 10 0.07
55 46 0.31
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACCTGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:66729685 original size:108 final size:109
Alignment explanation
Indices: 66729541--66729740 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 109
66729531 ATCCTTTTGA
* *
66729541 AACTTACCATTGCCATGTCTTGACCTGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACCTGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
* * *
66729604 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATACCTTAGCATAGTCTTA-ATGGGACCTTTGCCTTATAGT
* * *
66729649 AACTTATCAATGCCATGTCTTGACCTGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACCTGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
66729714 TGCCATACCTTAGCATAGTCTTAATGG
66 TGCCATACCTTAGCATAGTCTTAATGG
66729741 TATCATTGAA
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 11 0.14
110 20 0.25
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACCTGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATACCTTAGCATAGTCTTAATGGGACCTTTGCCTTATAGT
Found at i:66735659 original size:41 final size:40
Alignment explanation
Indices: 66735596--66735677 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 40
66735586 TTCGATTTTT
* *
66735596 GGACACGGGCGATGACACAGGCGTGT-TTAGGCCGTGTGAA
1 GGACACGGGCCAGGACACAGGCGTGTCTT-GGCCGTGTGAA
66735636 GGACACGGGCCAGGGACACAGGCGTGTGCTTGGCCGTGTGAA
1 GGACACGGGCCA-GGACACAGGCGTGT-CTTGGCCGTGTGAA
66735678 AACCCCTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
40 11 0.30
41 13 0.35
42 11 0.30
43 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.41, T:0.16
Consensus pattern (40 bp):
GGACACGGGCCAGGACACAGGCGTGTCTTGGCCGTGTGAA
Found at i:66738182 original size:21 final size:21
Alignment explanation
Indices: 66738158--66738227 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
66738148 TCACATAATT
*
66738158 ATGAACTTAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
* * *
66738179 ATGAGCTCAGATGTCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
66738203 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
66738224 ATGA
1 ATGA
66738228 GTTCAGATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 2 0.05
21 14 0.38
22 4 0.11
23 4 0.11
24 11 0.30
25 2 0.05
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:66738215 original size:45 final size:44
Alignment explanation
Indices: 66738146--66738235 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 44
66738136 CCAAAACACG
* *
66738146 TGTCACATAATTATGAACTTAGACCACAACTCAATGAGCTCAGA
1 TGTCACATAATCATGAACTCAGACCACAACTCAATGAGCTCAGA
*
66738190 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATA-ATCATGAACTCAGACCACAACTCAATGAGCTCAGA
66738235 T
1 T
66738236 CACATAGTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 9 0.21
45 33 0.79
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (44 bp):
TGTCACATAATCATGAACTCAGACCACAACTCAATGAGCTCAGA
Found at i:66748156 original size:43 final size:43
Alignment explanation
Indices: 66748107--66748211 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
66748097 GATTACCGAG
*
66748107 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGAATT-TT
1 ATGTGATTACGTGTAAGACCATGTCTAGGACATTGGAATTGTT
* * * *
66748149 ATTGTGATTGCGTGTAAGACCATGTCTGGGGCATTGGCATTGTT
1 A-TGTGATTACGTGTAAGACCATGTCTAGGACATTGGAATTGTT
* *
66748193 ATATGATTTCGTGTAAGAC
1 ATGTGATTACGTGTAAGAC
66748212 TCTATCTGGG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.02
43 50 0.93
44 3 0.06
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTAGGACATTGGAATTGTT
Found at i:66751017 original size:46 final size:46
Alignment explanation
Indices: 66750960--66751129 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
66750950 GGCATCCGTA
*
66750960 CTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAG
* * * *
66751006 CTCGTTGAGTTGAGCCCGAGTTC-GTGA--GATG-TAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCAAG
* *
66751053 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAG
*
66751099 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66751130 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 55 0.53
47 28 0.27
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAG
Found at i:66754138 original size:30 final size:31
Alignment explanation
Indices: 66754104--66754172 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
66754094 TATCGTATCT
* *
66754104 TAGGTTTCTTTATTC-TGGACTTCTTTATTC
1 TAGGTTTCTTCAATCTTGGACTTCTTTATTC
*
66754134 TAGGTTTC-TCAATCTTGGATTTCTTTATTC
1 TAGGTTTCTTCAATCTTGGACTTCTTTATTC
*
66754164 T-GTTTTCTT
1 TAGGTTTCTT
66754173 ATTATCTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (31 bp):
TAGGTTTCTTCAATCTTGGACTTCTTTATTC
Found at i:66754142 original size:15 final size:16
Alignment explanation
Indices: 66754104--66754164 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 16
66754094 TATCGTATCT
66754104 TAGG-TTTCTTTATTC
1 TAGGATTTCTTTATTC
*
66754119 T-GGACTTCTTTATTC
1 TAGGATTTCTTTATTC
* *
66754134 TAGG-TTTC-TCAATC
1 TAGGATTTCTTTATTC
*
66754148 TTGGATTTCTTTATTC
1 TAGGATTTCTTTATTC
66754164 T
1 T
66754165 GTTTTCTTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
14 9 0.26
15 19 0.54
16 7 0.20
ACGTcount: A:0.15, C:0.16, G:0.13, T:0.56
Consensus pattern (16 bp):
TAGGATTTCTTTATTC
Found at i:66756952 original size:46 final size:46
Alignment explanation
Indices: 66756900--66757075 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
66756890 TATTTGGGCA
66756900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
66756946 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
66756991 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * **
66757039 CCCGAGCTCATTGAGTTGAGTCTGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66757076 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:66757006 original size:93 final size:93
Alignment explanation
Indices: 66756896--66757066 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
66756886 AGGATATTTG
* *
66756896 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
66756961 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* *
66756989 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
66757054 TTGAGTCTGAGTT
66 TTGAGTCCGAGTT
66757067 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:66759503 original size:25 final size:25
Alignment explanation
Indices: 66759457--66759519 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
66759447 TTAGCGGCAT
*
66759457 TTTTTTAAAACG-C-CGCAAATTAA
1 TTTTGTAAAACGCCACGCAAATTAA
*
66759480 TTTTGTAAAATGCCACGCAAATTAA
1 TTTTGTAAAACGCCACGCAAATTAA
66759505 TTTTGTAAAACGCCA
1 TTTTGTAAAACGCCA
66759520 TCGTTTTGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
23 10 0.29
24 1 0.03
25 24 0.69
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (25 bp):
TTTTGTAAAACGCCACGCAAATTAA
Found at i:66759631 original size:41 final size:38
Alignment explanation
Indices: 66759545--66759690 Score: 125
Period size: 40 Copynumber: 3.7 Consensus size: 38
66759535 ATTTTAGTGG
*
66759545 CTTTAGCGACGCTTTTTAAAAACGCCGCTAAAGATCGA
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATCGA
*
66759583 GTATTAGCGGCGCTTTTTTAAGAAACGCCGCTATAAG-T-GCA
1 CT-TTAGCGGCGC-TTTTTAA-AAACGCCGCTA-AAGATCG-A
* * * *
66759624 CCTTTAGCAGCGCTTTTTAAAAAATGCCGCTAATGCTCGA
1 -CTTTAGCGGCGCTTTTT-AAAAACGCCGCTAAAGATCGA
* *
66759664 TCTTTAGCGGTGTTTTTTGAAAAACGC
1 -CTTTAGCGGCGCTTTTT-AAAAACGC
66759691 TACAAAAATG
Statistics
Matches: 87, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
38 1 0.01
39 11 0.13
40 46 0.53
41 25 0.29
42 4 0.05
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (38 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATCGA
Found at i:66759920 original size:7 final size:7
Alignment explanation
Indices: 66759844--66760032 Score: 62
Period size: 7 Copynumber: 26.4 Consensus size: 7
66759834 TTAATTATCA
*
66759844 TTATAGT
1 TTATGGT
*
66759851 TTAGGGT
1 TTATGGT
*
66759858 TTACGGT
1 TTATGGT
*
66759865 ATATGGT
1 TTATGGT
* *
66759872 TAAGGGT
1 TTATGGT
66759879 TTAAT-GT
1 TT-ATGGT
66759886 TTATGAG-
1 TTATG-GT
66759893 TTACT-GT
1 TTA-TGGT
*
66759900 TGTACGGT
1 T-TATGGT
*
66759908 TTATGGA
1 TTATGGT
66759915 TTATGGGT
1 TTAT-GGT
* *
66759923 TTAGGGA
1 TTATGGT
66759930 TTATGGT
1 TTATGGT
66759937 TTATGGT
1 TTATGGT
66759944 TTATGGGT
1 TTAT-GGT
* *
66759952 TAAAGG-
1 TTATGGT
*
66759958 TTAGGGT
1 TTATGGT
* *
66759965 TTAAGTT
1 TTATGGT
* *
66759972 TTAAGGGG
1 TT-ATGGT
**
66759980 TTGGGGT
1 TTATGGT
*
66759987 TTAAGGT
1 TTATGGT
*
66759994 TTAGGGGT
1 TTA-TGGT
*
66760002 TAATGGT
1 TTATGGT
*
66760009 TTATGTT
1 TTATGGT
66760016 TTATGGT
1 TTATGGT
*
66760023 TTAAGGT
1 TTATGGT
66760030 TTA
1 TTA
66760033 GGGGTTAGGG
Statistics
Matches: 132, Mismatches: 38, Indels: 24
0.68 0.20 0.12
Matches are distributed among these distances:
6 7 0.05
7 98 0.74
8 27 0.20
ACGTcount: A:0.21, C:0.02, G:0.32, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:66759925 original size:15 final size:15
Alignment explanation
Indices: 66759905--66759952 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
66759895 ACTGTTGTAC
66759905 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
66759920 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
66759934 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
66759949 GGTT
1 GGTT
66759953 AAAGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:66759986 original size:22 final size:21
Alignment explanation
Indices: 66759956--66760048 Score: 78
Period size: 22 Copynumber: 4.3 Consensus size: 21
66759946 ATGGGTTAAA
*
66759956 GGTTAGGGTTTAAGTTTTAAGG
1 GGTTAGGGTTTAAGGTTT-AGG
*
66759978 GGTTGGGGTTTAAGGTTTAGG
1 GGTTAGGGTTTAAGGTTTAGG
* * * *
66759999 GGTTAATGGTTTATGTTTTATG
1 GGTT-AGGGTTTAAGGTTTAGG
* * * *
66760021 GTTTAAGGTTTAGGGGTTAGG
1 GGTTAGGGTTTAAGGTTTAGG
66760042 GGTTAGG
1 GGTTAGG
66760049 AATTTAGGGA
Statistics
Matches: 55, Mismatches: 15, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
21 24 0.44
22 31 0.56
ACGTcount: A:0.18, C:0.00, G:0.40, T:0.42
Consensus pattern (21 bp):
GGTTAGGGTTTAAGGTTTAGG
Found at i:66760343 original size:4 final size:4
Alignment explanation
Indices: 66760336--66760360 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
66760326 AAAAACATTG
66760336 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
66760361 GGTAACAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:66761115 original size:52 final size:52
Alignment explanation
Indices: 66761037--66761140 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
66761027 TCCAGTTAGA
*
66761037 CTCTGAGATAGAAGAGATGGCAGTGAACCAGACGGCGGCGTTGAAGGTGGGG
1 CTCTGAGATAGAAGAGATGACAGTGAACCAGACGGCGGCGTTGAAGGTGGGG
66761089 CTCTGAGATAGAAGAGATGACAGTGAACCAGACGGCGGCGTTGAAGGTGGGG
1 CTCTGAGATAGAAGAGATGACAGTGAACCAGACGGCGGCGTTGAAGGTGGGG
66761141 TTGTGTCTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.28, C:0.15, G:0.41, T:0.15
Consensus pattern (52 bp):
CTCTGAGATAGAAGAGATGACAGTGAACCAGACGGCGGCGTTGAAGGTGGGG
Found at i:66766886 original size:22 final size:22
Alignment explanation
Indices: 66766820--66766887 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 22
66766810 AAATTTTAAA
* * *
66766820 AATTAAACATAATATAATATTTA
1 AATTAAA-ATAAAATAATTTTTT
* *
66766843 AAGTAGAAAT-AAAT-ATTATTT
1 AATTA-AAATAAAATAATTTTTT
66766864 AATTAAAATAAAATAATTTTTT
1 AATTAAAATAAAATAATTTTTT
66766886 AA
1 AA
66766888 AAGGTTATGA
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
20 4 0.11
21 12 0.34
22 11 0.31
23 6 0.17
24 2 0.06
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (22 bp):
AATTAAAATAAAATAATTTTTT
Found at i:66767040 original size:43 final size:43
Alignment explanation
Indices: 66766887--66767032 Score: 188
Period size: 43 Copynumber: 3.4 Consensus size: 43
66766877 TAATTTTTTA
**
66766887 AAAGGTTATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
1 AAAGGTTATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* * * *
66766930 AAAGGTCATGACCTTTAGCAGCGTTTTTGGG-GAAGCGCCGCT
1 AAAGGTTATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* *
66766972 AAA-ATTCATGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCT
1 AAAGGTT-ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
*
66767015 AAAGGTTATGACTTTTAG
1 AAAGGTTATGACCTTTAG
66767033 TGTCGTTTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 35 0.41
43 48 0.56
44 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
AAAGGTTATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
Found at i:66788457 original size:43 final size:42
Alignment explanation
Indices: 66788296--66788457 Score: 134
Period size: 44 Copynumber: 3.8 Consensus size: 42
66788286 AACGCCAATT
* * *
66788296 TCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCACTG
1 TCCCAGACGTGGTCTTACATGAAATCACATATCGATGCAAC-G
* * * * *
66788339 TCCCAGAC--AGTCTTACA-CAAA-CTCATAAACGATGCCAATG
1 TCCCAGACGTGGTCTTACATGAAATCACAT-ATCGATG-CAACG
* * * * *
66788379 TCCTAGACATGGTCTTATACGTAAATCACAAATCGATGTCAACG
1 TCCCAGACGTGGTCTTACATG-AAATCACATATCGATG-CAACG
66788423 TCCCAGACGTGGTCTTACATGAAATCACATATCGA
1 TCCCAGACGTGGTCTTACATGAAATCACATATCGA
66788458 AATCCTATGT
Statistics
Matches: 90, Mismatches: 22, Indels: 14
0.71 0.17 0.11
Matches are distributed among these distances:
39 4 0.04
40 15 0.17
41 10 0.11
42 7 0.08
43 21 0.23
44 30 0.33
45 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGAAATCACATATCGATGCAACG
Found at i:66792285 original size:43 final size:43
Alignment explanation
Indices: 66792232--66792395 Score: 156
Period size: 43 Copynumber: 3.8 Consensus size: 43
66792222 ACCGAGATGC
* * *
66792232 GATTATATGTAAGACCATGTTTGGGACATTGGCATTGTATTTT
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTTT
* * *
66792275 GATTACATGTAAGACCATGTCTGGGAAATTGGCATCAT-TA-ATC
1 GATTACATGTAAGACCATGTCTGGGATATTGGCAT--TGTATTTT
* * * * *
66792318 GATTTCATGTAAGACCCTGTCTGGGATAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT-TTT
* *
66792361 GATAACATGTAAGACCATATCTGGGATA-TGGCATT
1 GATTACATGTAAGACCATGTCTGGGATATTGGCATT
66792396 ATACGAGTTA
Statistics
Matches: 98, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 88 0.90
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTTT
Found at i:66792376 original size:86 final size:85
Alignment explanation
Indices: 66792238--66792394 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
66792228 ATGCGATTAT
* * * * * *
66792238 ATGTAAGACCATGTTTGGGACATTGGCATTGTATTTTGATTACATGTAAGACCATGTCTGGGAAA
1 ATGTAAGACCATGTCTGGGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATCTGGGAAA
66792303 TTGGCATCATTAATCGATTTC
66 -TGGCATCATTAATCGATTTC
* * *
66792324 ATGTAAGACCCTGTCTGGGATAGTGGCATCG-ATATGTGATAACATGTAAGACCATATCTGGGAT
1 ATGTAAGACCATGTCTGGGACAGTGGCATCGTAT-TGTGATAACATGTAAGACCATATCTGGGAA
66792388 ATGGCAT
65 ATGGCAT
66792395 TATACGAGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 8 0.13
86 53 0.87
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (85 bp):
ATGTAAGACCATGTCTGGGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATCTGGGAAA
TGGCATCATTAATCGATTTC
Found at i:66793125 original size:22 final size:20
Alignment explanation
Indices: 66793100--66793148 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
66793090 GTTATGTAAG
*
66793100 TTTGATGATTTTGGCATATTGA
1 TTTGATG-TTTTGGC-TATGGA
66793122 TTTGGTATGTTTTGGCTATGGA
1 TTT-G-ATGTTTTGGCTATGGA
66793144 TTTGA
1 TTTGA
66793149 GTAGTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.18, C:0.04, G:0.27, T:0.51
Consensus pattern (20 bp):
TTTGATGTTTTGGCTATGGA
Found at i:66795027 original size:49 final size:48
Alignment explanation
Indices: 66794972--66795203 Score: 221
Period size: 49 Copynumber: 4.7 Consensus size: 48
66794962 CTGGTACGCA
* *
66794972 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTAT-CAGTACACG
* * * * *
66795021 TAGTAGCTTGCACTTAGTACAACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACTATCAG-TACACG
* * * * * * *
66795071 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTGCGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-CTATCA-GTACACG
* * * * *
66795122 TAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTAT-CAGTACACG
*
66795171 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
66795204 TCACAATAGC
Statistics
Matches: 145, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
49 66 0.46
50 44 0.30
51 34 0.23
52 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTATCAGTACACG
Found at i:66795199 original size:100 final size:99
Alignment explanation
Indices: 66794972--66795203 Score: 279
Period size: 100 Copynumber: 2.3 Consensus size: 99
66794962 CTGGTACGCA
* * * *
66794972 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCTTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
** * *
66795037 GTACAACACACGTGACCTAACCATCTGATACACG
66 GTACAACACACGCAACCTAACAATCCGATACACG
* * * *
66795071 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAT-CAGGTGCGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCA-GTACACATAGTAGCCTGCAC
* * * *
66795135 TTAGTACTACACATGCAACC-AACAATCCGGTACATG
63 TTAGTACAACACACGCAACCTAACAATCCGATACACG
66795171 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
66795204 TCACAATAGC
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
99 29 0.26
100 47 0.42
101 36 0.32
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACAACACACGCAACCTAACAATCCGATACACG
Found at i:66797296 original size:27 final size:27
Alignment explanation
Indices: 66797266--66797443 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66797256 ATATTGAGTC
* * * *
66797266 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
66797293 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66797320 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
66797348 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
66797375 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
66797402 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66797429 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66797444 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:66797405 original size:82 final size:81
Alignment explanation
Indices: 66797287--66797442 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66797277 TGCTATATAA
* *
66797287 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66797352 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66797369 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66797433 CACTTAGTGC
65 CACTTAGTGC
66797443 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66815570 original size:42 final size:41
Alignment explanation
Indices: 66815427--66815621 Score: 205
Period size: 41 Copynumber: 4.8 Consensus size: 41
66815417 GCGATTCGTC
* * *
66815427 ATAGCTTCGACTATATATGGCAGTTAGTGTACGAGAATGAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAATGAG
* * *
66815468 ATAGCTTCGGCCACATATGGCACTTAGTGTGTGAGAATGAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAATGAG
* * * *
66815509 ATAGCTTCAGCTACATATGGCACTTAGTGTGCAAGAAATGTG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAG-AATGAG
* * ** *
66815551 ATAGCTTTGGCTATGTATGGCACTTAGTGTGCGA-TTTGAA
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAATGAG
* *
66815591 ATAGCTTCGGCTATGTACT-ACACTTAGTGTG
1 ATAGCTTCGGCTATATA-TGGCACTTAGTGTG
66815622 TGACATATCA
Statistics
Matches: 130, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
40 29 0.22
41 67 0.52
42 34 0.26
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (41 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGAATGAG
Found at i:66815575 original size:83 final size:82
Alignment explanation
Indices: 66815427--66815581 Score: 204
Period size: 83 Copynumber: 1.9 Consensus size: 82
66815417 GCGATTCGTC
* * *
66815427 ATAGCTTCGACTATATATGGCAGTTAGTGTACGAGAATGAGATAGCTTCGGCCACATATGGCACT
1 ATAGCTTCGACTACATATGGCACTTAGTGTACAAGAATGAGATAGCTTCGGCCACATATGGCACT
66815492 TAGTGTGTGAGAATGAG
66 TAGTGTGTGAGAATGAG
* * * * **
66815509 ATAGCTTC-AGCTACATATGGCACTTAGTGTGCAAGAAATGTGATAGCTTTGGCTATGTATGGCA
1 ATAGCTTCGA-CTACATATGGCACTTAGTGTACAAG-AATGAGATAGCTTCGGCCACATATGGCA
66815573 CTTAGTGTG
64 CTTAGTGTG
66815582 CGATTTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 1 0.02
82 29 0.47
83 32 0.52
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (82 bp):
ATAGCTTCGACTACATATGGCACTTAGTGTACAAGAATGAGATAGCTTCGGCCACATATGGCACT
TAGTGTGTGAGAATGAG
Found at i:66815619 original size:82 final size:81
Alignment explanation
Indices: 66815393--66815621 Score: 226
Period size: 82 Copynumber: 2.8 Consensus size: 81
66815383 TGATAACAAA
* * * ** * * *
66815393 TTGGCTATTTGTGGCACTTAGTGTGCGATTCGTCATAGCTTCGACTATATATGGCAGTTAGTGTA
1 TTGGCTATATATGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTATATATGGCACTTAGTGTG
*
66815458 CGAGAATGAGATAGCT
66 CAAGAATGAGATAGCT
* * * * ** * * *
66815474 TCGGCCACATATGGCACTTAGTGTGTGAGAATGAGATAGCTTCAGCTACATATGGCACTTAGTGT
1 TTGGCTATATATGGCACTTAGTGTGCGA-TTTGAAATAGCTTCGGCTATATATGGCACTTAGTGT
*
66815539 GCAAGAAATGTGATAGCT
65 GCAAG-AATGAGATAGCT
* * *
66815557 TTGGCTATGTATGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTATGTACT-ACACTTAGTGT
1 TTGGCTATATATGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTATATA-TGGCACTTAGTGT
66815621 G
65 G
66815622 TGACATATCA
Statistics
Matches: 115, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
81 22 0.19
82 58 0.50
83 35 0.30
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (81 bp):
TTGGCTATATATGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTATATATGGCACTTAGTGTG
CAAGAATGAGATAGCT
Found at i:66826457 original size:23 final size:23
Alignment explanation
Indices: 66826431--66826483 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
66826421 ATCACATTAC
66826431 ACATATAATCACATAAAATTTAA
1 ACATATAATCACATAAAATTTAA
66826454 ACATATAATCACATAAAATTTAA
1 ACATATAATCACATAAAATTTAA
*
66826477 GCATATA
1 ACATATA
66826484 TCATAATACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.55, C:0.13, G:0.02, T:0.30
Consensus pattern (23 bp):
ACATATAATCACATAAAATTTAA
Found at i:66826593 original size:39 final size:39
Alignment explanation
Indices: 66826455--66826612 Score: 181
Period size: 39 Copynumber: 4.1 Consensus size: 39
66826445 AAAATTTAAA
* * * *
66826455 CATATAATCACATAAAATTTAAGCATATATCATAATACT
1 CATATAATCGCATAACATTCAAGCATATATCACAATACT
* *
66826494 CATATAATCGCATAACATTTAAGCACATATCACAATACT
1 CATATAATCGCATAACATTCAAGCATATATCACAATACT
* ** *
66826533 CATATAATCACATAATGTTCAAGCATATATCACATTACT
1 CATATAATCGCATAACATTCAAGCATATATCACAATACT
* ** * *
66826572 CATATAATCGTATGCCATTCAAGCTTGTATCACAATACT
1 CATATAATCGCATAACATTCAAGCATATATCACAATACT
66826611 CA
1 CA
66826613 AAAACATGTT
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.32
Consensus pattern (39 bp):
CATATAATCGCATAACATTCAAGCATATATCACAATACT
Found at i:66826603 original size:78 final size:78
Alignment explanation
Indices: 66826455--66826612 Score: 208
Period size: 78 Copynumber: 2.0 Consensus size: 78
66826445 AAAATTTAAA
* * *
66826455 CATATAATCACATAAAATTTAAGCATATATCATAATACTCATATAATCGCATAACATTTAAGCAC
1 CATATAATCACATAAAATTCAAGCATATATCACAATACTCATATAATCGCATAACATTCAAGCAC
66826520 ATATCACAATACT
66 ATATCACAATACT
** * * ** **
66826533 CATATAATCACATAATGTTCAAGCATATATCACATTACTCATATAATCGTATGCCATTCAAGCTT
1 CATATAATCACATAAAATTCAAGCATATATCACAATACTCATATAATCGCATAACATTCAAGCAC
*
66826598 GTATCACAATACT
66 ATATCACAATACT
66826611 CA
1 CA
66826613 AAAACATGTT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.32
Consensus pattern (78 bp):
CATATAATCACATAAAATTCAAGCATATATCACAATACTCATATAATCGCATAACATTCAAGCAC
ATATCACAATACT
Found at i:66828859 original size:11 final size:11
Alignment explanation
Indices: 66828830--66828861 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
66828820 AATAAATAAT
66828830 AAATGAAAAAG
1 AAATGAAAAAG
66828841 AAAT--AAAAG
1 AAATGAAAAAG
66828850 AAATGAAAAAG
1 AAATGAAAAAG
66828861 A
1 A
66828862 GAAACAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09
Consensus pattern (11 bp):
AAATGAAAAAG
Found at i:66828879 original size:22 final size:21
Alignment explanation
Indices: 66828834--66828885 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
66828824 AATAATAAAT
*
66828834 GAAAAAGA-AATAAAAGAAAT
1 GAAAAAGAGAATAAAAGAAAC
66828854 GAAAAAGAGAA-ACAAAGCAAAC
1 GAAAAAGAGAATA-AAAG-AAAC
*
66828876 GAAATAGAGA
1 GAAAAAGAGA
66828886 TGAACAGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.33
21 6 0.22
22 12 0.44
ACGTcount: A:0.69, C:0.06, G:0.19, T:0.06
Consensus pattern (21 bp):
GAAAAAGAGAATAAAAGAAAC
Found at i:66828905 original size:4 final size:4
Alignment explanation
Indices: 66828896--66828936 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
66828886 TGAACAGGGG
*
66828896 AAGA AAGA AAGGA ATGA AAGGA AAGA AAGA AAGA AAGA AAG
1 AAGA AAGA AA-GA AAGA AA-GA AAGA AAGA AAGA AAGA AAG
66828937 GGAGAAAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 26 0.79
5 7 0.21
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (4 bp):
AAGA
Found at i:66828916 original size:9 final size:9
Alignment explanation
Indices: 66828898--66828936 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
66828888 AACAGGGGAA
66828898 GAAAGAAAG
1 GAAAGAAAG
*
66828907 GAATGAAAG
1 GAAAGAAAG
66828916 GAAAGAAA-
1 GAAAGAAAG
66828924 GAAAGAAA-
1 GAAAGAAAG
66828932 GAAAG
1 GAAAG
66828937 GGAGAAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 13 0.46
9 15 0.54
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (9 bp):
GAAAGAAAG
Found at i:66828943 original size:12 final size:12
Alignment explanation
Indices: 66828896--66828936 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
66828886 TGAACAGGGG
66828896 AAGAAAGAAAGGA
1 AAGAAAGAAA-GA
*
66828909 ATGAAAGGAAAGA
1 AAGAAA-GAAAGA
66828922 AAGAAAGAAAGA
1 AAGAAAGAAAGA
66828934 AAG
1 AAG
66828937 GGAGAAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.36
13 12 0.48
14 4 0.16
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (12 bp):
AAGAAAGAAAGA
Found at i:66830104 original size:18 final size:18
Alignment explanation
Indices: 66830081--66830121 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
66830071 ATAAAGGTAT
66830081 TGAATAATTGACTGCTAC
1 TGAATAATTGACTGCTAC
* *
66830099 TGAATATTTGACTGTTAC
1 TGAATAATTGACTGCTAC
66830117 TGAAT
1 TGAAT
66830122 TACTGATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (18 bp):
TGAATAATTGACTGCTAC
Found at i:66832065 original size:42 final size:42
Alignment explanation
Indices: 66832006--66832127 Score: 178
Period size: 42 Copynumber: 3.0 Consensus size: 42
66831996 TATAGGGGTT
*
66832006 TTCACACGGCCTGGCACACGCCCGTGTCCCTGGCTCGTGTCC
1 TTCACACGGCCTGGCACACGCCCGTGTCCCTGGCCCGTGTCC
*
66832048 TTCACACGGCCTGGCACACGCCTGTGTCCCTGGCCCGTGTCC
1 TTCACACGGCCTGGCACACGCCCGTGTCCCTGGCCCGTGTCC
* *
66832090 TTCACACGGCCAT-G-ACATGCCCGTGT-CCTAGCCCGTGT
1 TTCACACGGCC-TGGCACACGCCCGTGTCCCTGGCCCGTGT
66832128 GCAAAAATAA
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
40 11 0.15
41 10 0.14
42 52 0.70
43 1 0.01
ACGTcount: A:0.11, C:0.41, G:0.25, T:0.22
Consensus pattern (42 bp):
TTCACACGGCCTGGCACACGCCCGTGTCCCTGGCCCGTGTCC
Found at i:66833176 original size:46 final size:48
Alignment explanation
Indices: 66833087--66833262 Score: 136
Period size: 47 Copynumber: 3.8 Consensus size: 48
66833077 GGGGTAAGGT
* *
66833087 GCCGATGCCACGTCCCAAACATGGTCTTACACT-G-ACTTACGTCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCA-TT-CGTCTTGTA
*
66833135 GCCGATG-CATGTCCCAGACAT-GTCTTACATTAGCATTCGTCTCAT-TA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATTCGTCT--TGTA
* * * * ** *
66833182 -CCGATGCCATGTGCCAGACATGGTCTTACATTGGC-TCTCATGATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAT-TCGTCTTGTA
* *
66833229 GCCAATG-CATGTCCTAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
66833263 TCAGAATAAC
Statistics
Matches: 105, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
46 32 0.30
47 44 0.42
48 29 0.28
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATTCGTCTTGTA
Found at i:66838900 original size:285 final size:285
Alignment explanation
Indices: 66838390--66838961 Score: 1126
Period size: 285 Copynumber: 2.0 Consensus size: 285
66838380 GTATGGTGTC
*
66838390 ATTTTAATGCTCGACTGAAAACTGTTATTATAAGCAAATTCCATCAAAGGTAGATATTGTTCCCA
1 ATTTTAATGCTCGACTGAAAACTATTATTATAAGCAAATTCCATCAAAGGTAGATATTGTTCCCA
66838455 CGTACCTAAAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATATCCATTCAGA
66 CGTACCTAAAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATATCCATTCAGA
66838520 TTGACCATCTGTTTGTGGATGAAAAGCAGTACTAAAGTGCAATTTAGTACCCAGAGCATCTTGCA
131 TTGACCATCTGTTTGTGGATGAAAAGCAGTACTAAAGTGCAATTTAGTACCCAGAGCATCTTGCA
66838585 ACTTCTTACAGAATTGCGATGTAAATCTCGAGTTTCTATCTGACACTATTGACAATGGCACACCA
196 ACTTCTTACAGAATTGCGATGTAAATCTCGAGTTTCTATCTGACACTATTGACAATGGCACACCA
66838650 TGTAATCTCACAATATCAGAAATGT
261 TGTAATCTCACAATATCAGAAATGT
66838675 ATTTTAATGCTCGACTGAAAACTATTATTATAAGCAAATTCCATCAAAGGTAGATATTGTTCCCA
1 ATTTTAATGCTCGACTGAAAACTATTATTATAAGCAAATTCCATCAAAGGTAGATATTGTTCCCA
66838740 CGTACCTAAAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATATCCATTCAGA
66 CGTACCTAAAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATATCCATTCAGA
66838805 TTGACCATCTGTTTGTGGATGAAAAGCAGTACTAAAGTGCAATTTAGTACCCAGAGCATCTTGCA
131 TTGACCATCTGTTTGTGGATGAAAAGCAGTACTAAAGTGCAATTTAGTACCCAGAGCATCTTGCA
66838870 ACTTCTTACAGAATTGCGATGTAAATCTCGAGTTTCTATCTGACACTATTGACAATGGCACACCA
196 ACTTCTTACAGAATTGCGATGTAAATCTCGAGTTTCTATCTGACACTATTGACAATGGCACACCA
*
66838935 TGTAATCTCACAATATCATAAATGT
261 TGTAATCTCACAATATCAGAAATGT
66838960 AT
1 AT
66838962 AACTCAGCTA
Statistics
Matches: 285, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
285 285 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (285 bp):
ATTTTAATGCTCGACTGAAAACTATTATTATAAGCAAATTCCATCAAAGGTAGATATTGTTCCCA
CGTACCTAAAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATATCCATTCAGA
TTGACCATCTGTTTGTGGATGAAAAGCAGTACTAAAGTGCAATTTAGTACCCAGAGCATCTTGCA
ACTTCTTACAGAATTGCGATGTAAATCTCGAGTTTCTATCTGACACTATTGACAATGGCACACCA
TGTAATCTCACAATATCAGAAATGT
Found at i:66843201 original size:32 final size:32
Alignment explanation
Indices: 66843159--66843227 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
66843149 ACGACCAGAC
*
66843159 CACACGCCCGTGTGTCTAGCCTGTGTGCTATG
1 CACACACCCGTGTGTCTAGCCTGTGTGCTATG
66843191 CACACACCCGTGTGTCTAGCCTGTGTGCTATG
1 CACACACCCGTGTGTCTAGCCTGTGTGCTATG
66843223 CACAC
1 CACAC
66843228 GCTCGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.26
Consensus pattern (32 bp):
CACACACCCGTGTGTCTAGCCTGTGTGCTATG
Found at i:66843247 original size:30 final size:31
Alignment explanation
Indices: 66843159--66843250 Score: 98
Period size: 32 Copynumber: 2.9 Consensus size: 31
66843149 ACGACCAGAC
* *
66843159 CACACGCCCGTGTGTCTAGCCTGTGTGCTATG
1 CACACACCCG-GTGCCTAGCCTGTGTGCTATG
*
66843191 CACACACCCGTGTGTCTAGCCTGTGTGCTATG
1 CACACACCCG-GTGCCTAGCCTGTGTGCTATG
* *
66843223 CACACGCTC-GTGCCTAGGCC-GTGTGCTA
1 CACACACCCGGTGCCTA-GCCTGTGTGCTA
66843251 GGCCGTACCA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
30 14 0.25
31 3 0.05
32 38 0.69
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.26
Consensus pattern (31 bp):
CACACACCCGGTGCCTAGCCTGTGTGCTATG
Found at i:66845281 original size:27 final size:27
Alignment explanation
Indices: 66845125--66845483 Score: 330
Period size: 27 Copynumber: 13.3 Consensus size: 27
66845115 TACCCGATAG
* * * *
66845125 GGGTATATCGGTCATTTTACACTAT-AA
1 GGGTATTTCGGTAATTTTACA-AATCGA
* * * *
66845152 GGGTATTTTGGTAATTTTGC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * *
66845179 GGGTATTTCGATAATTTTACAATTCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
66845206 GGGTGTTTCGATAATTTTACAAATCTA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
66845233 GGGTAATTCGGTAATTTTACAAATCTA
1 GGGTATTTCGGTAATTTTACAAATCGA
66845260 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
66845287 GTGTGTTTCAGTAATTGTATAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
66845314 GGGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
66845341 GGGTGTTTAGATAATTTCACAAATTG-
1 GGGTATTTCGGTAATTTTACAAATCGA
*
66845367 GGAGCATTTCGGTAATTTTACAAATCGA
1 GG-GTATTTCGGTAATTTTACAAATCGA
* *
66845395 GGGTATTTCAGTAATTTTA-TAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
66845421 GGATATTTTGATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
66845448 GGGTATTTCGATAATTTTGCAAGTCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
66845475 GGGTATTTC
1 GGGTATTTC
66845484 AATAATTTCT
Statistics
Matches: 272, Mismatches: 54, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
25 1 0.00
26 23 0.08
27 244 0.90
28 4 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:66845488 original size:27 final size:27
Alignment explanation
Indices: 66845178--66845491 Score: 348
Period size: 27 Copynumber: 11.7 Consensus size: 27
66845168 TTGCACTACA
*
66845178 AGGGTATTTCGATAATTTTACAATTCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
66845205 GGGGTGTTTCGATAATTTTACAAATCT
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
66845232 AGGGTAATTCGGTAATTTTACAAATCT
1 AGGGTATTTCGATAATTTTACAAATCG
*
66845259 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
66845286 AGTGTGTTTC-AGTAATTGTATAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
66845313 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
66845340 AGGGTGTTTAGATAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
66845367 -GGAGCATTTCGGTAATTTTACAAATCG
1 AGG-GTATTTCGATAATTTTACAAATCG
*
66845394 AGGGTATTTC-AGTAATTTTA-TAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
66845420 AGGATATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
66845447 AGGGTATTTCGATAATTTTGCAAGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
66845474 AGGGTATTTCAATAATTT
1 AGGGTATTTCGATAATTT
66845492 CTCTTTATTA
Statistics
Matches: 240, Mismatches: 40, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
26 23 0.10
27 214 0.89
28 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:66845800 original size:28 final size:28
Alignment explanation
Indices: 66845763--66845854 Score: 114
Period size: 28 Copynumber: 3.3 Consensus size: 28
66845753 TGGCCCTTTT
* *
66845763 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
* *
66845791 AGGCCCAATCACCTTCATATGGCCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
*
66845819 AGGCTCAATCAT-ATTCATATGGCCCATC
1 AGGCCCAATC-TCATTCATATGGCCCATC
*
66845847 AGGTCCAA
1 AGGCCCAA
66845855 CTACTTTCCA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCTCATTCATATGGCCCATC
Found at i:66850617 original size:29 final size:29
Alignment explanation
Indices: 66850572--66850696 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
66850562 GAAAGCATGT
* *
66850572 ATATGAATGTGAGTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
66850601 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
66850630 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
66850659 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
66850687 GTATGCATGT
1 ATATGAATGT
66850697 ATGTAAACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 22 0.26
29 63 0.74
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:66851828 original size:17 final size:18
Alignment explanation
Indices: 66851771--66851828 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 18
66851761 AAGAGATTTT
**
66851771 ACAAGGTTTTCAAATTTAA
1 ACAAGGTTTTC-AATGAAA
*
66851790 AGAAGGGTTTTCAATGAAA
1 ACAA-GGTTTTCAATGAAA
*
66851809 ACAAGGTTTTCGAT-AAA
1 ACAAGGTTTTCAATGAAA
66851826 ACA
1 ACA
66851829 CTTCAATGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 6 0.18
18 9 0.27
19 11 0.33
20 7 0.21
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.29
Consensus pattern (18 bp):
ACAAGGTTTTCAATGAAA
Found at i:66856077 original size:43 final size:43
Alignment explanation
Indices: 66855997--66856145 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 43
66855987 AGACATCGTA
* * * * *
66855997 TAAGACCCTGTCTGGGACA-CAGGCCTCGAT-TGAGATTTACGTA
1 TAAGACCATGTCTGGGACATC-GGCATCGATAT-TGATTTACATG
*
66856040 TAAGACCATGTTTGGGACATCGGCATCG-TATCTGATTT-CATG
1 TAAGACCATGTCTGGGACATCGGCATCGATAT-TGATTTACATG
* * ** *
66856082 TAAGACCTTGTCTGGGATAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACATCGGCATCGATATTGATTTACATG
*
66856125 TAAGACCACGTCTGGGACATC
1 TAAGACCATGTCTGGGACATC
66856146 AGTATTGTAC
Statistics
Matches: 84, Mismatches: 18, Indels: 8
0.76 0.16 0.07
Matches are distributed among these distances:
42 31 0.37
43 52 0.62
44 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATCGGCATCGATATTGATTTACATG
Found at i:66858739 original size:46 final size:45
Alignment explanation
Indices: 66858671--66858780 Score: 157
Period size: 46 Copynumber: 2.4 Consensus size: 45
66858661 TAAGCCATGA
* *
66858671 CCAGACATGGTCTTACACTGACTTACGTCTTGTAGCCGATGCATGTC
1 CCAGACAT-GTCTTACACTGACTTACGTCTCGTAGCCGA-CCATGTC
*
66858718 CCAGACATGTCTTACACTGACTTACGTCTCGTAGTCGACCATGTC
1 CCAGACATGTCTTACACTGACTTACGTCTCGTAGCCGACCATGTC
* *
66858763 CCACACATATCTTACACT
1 CCAGACATGTCTTACACT
66858781 AGCACTCATC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 22 0.38
46 28 0.48
47 8 0.14
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (45 bp):
CCAGACATGTCTTACACTGACTTACGTCTCGTAGCCGACCATGTC
Found at i:66866941 original size:43 final size:43
Alignment explanation
Indices: 66866894--66867056 Score: 143
Period size: 43 Copynumber: 3.8 Consensus size: 43
66866884 ATCGAGATGT
* * *
66866894 GATTACATGTAAGACCATGTCTGGGACTTTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * *
66866937 GATTATGTGTAAGACCATGTTTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTGA
* * * *
66866980 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* * * * *
66867023 GATAACTTGTAACACCATATCTGGGATA-TGGCAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAT
66867057 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 85 0.89
44 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:66873633 original size:18 final size:18
Alignment explanation
Indices: 66873603--66873660 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
66873593 GAATTGGCCT
66873603 AATGGGCCGAAATAGGCTA
1 AATGGGCC-AAATAGGCTA
*
66873622 AATGGGCCAAATGGGCT-
1 AATGGGCCAAATAGGCTA
*
66873639 ATTGGGCCCATAATAGGC-A
1 AATGGG-CCA-AATAGGCTA
66873658 AAT
1 AAT
66873661 TTTGATAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 5 0.16
18 11 0.34
19 16 0.50
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.19
Consensus pattern (18 bp):
AATGGGCCAAATAGGCTA
Found at i:66873831 original size:29 final size:29
Alignment explanation
Indices: 66873718--66873830 Score: 172
Period size: 29 Copynumber: 3.9 Consensus size: 29
66873708 TATAAAGGTT
*
66873718 ATTTGGGCCTAATGGGTCATATGAATATG
1 ATTTGGGCCTAATGGGCCATATGAATATG
66873747 ATTTGGGCCTAATGGGCCATATGAATATG
1 ATTTGGGCCTAATGGGCCATATGAATATG
*
66873776 ATTTGGGCCTAATGGGCCATATGAATGTG
1 ATTTGGGCCTAATGGGCCATATGAATATG
** **
66873805 AACTGGGCCTAATAAGCCATATGAAT
1 ATTTGGGCCTAATGGGCCATATGAAT
66873831 GAGATGGGAC
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 78 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATATGAATATG
Found at i:66883132 original size:28 final size:28
Alignment explanation
Indices: 66883094--66883247 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
66883084 TAAATTGTAC
*
66883094 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
66883122 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
66883150 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
66883178 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
66883206 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
66883233 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66883248 GACTTAATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 24 0.20
28 97 0.80
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:66891347 original size:28 final size:27
Alignment explanation
Indices: 66891309--66891433 Score: 205
Period size: 27 Copynumber: 4.6 Consensus size: 27
66891299 TAAATTGTAC
*
66891309 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
*
66891337 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATAT
66891364 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
66891392 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
*
66891419 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66891434 GACTTAATAT
Statistics
Matches: 94, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
27 51 0.54
28 43 0.46
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:66891374 original size:55 final size:55
Alignment explanation
Indices: 66891309--66891433 Score: 214
Period size: 55 Copynumber: 2.3 Consensus size: 55
66891299 TAAATTGTAC
* *
66891309 AGCACTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
*
66891364 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
*
66891419 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66891434 GACTTAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGCTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
Found at i:66899814 original size:26 final size:26
Alignment explanation
Indices: 66899785--66899834 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
66899775 GATATAACTG
*
66899785 ACAATATAATAATAAGAATAATAACA
1 ACAACATAATAATAAGAATAATAACA
* *
66899811 ACAACATAATTATAATAATAATAA
1 ACAACATAATAATAAGAATAATAA
66899835 ATCTAAATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.64, C:0.08, G:0.02, T:0.26
Consensus pattern (26 bp):
ACAACATAATAATAAGAATAATAACA
Found at i:66914700 original size:38 final size:38
Alignment explanation
Indices: 66914657--66914865 Score: 130
Period size: 38 Copynumber: 5.0 Consensus size: 38
66914647 TTTCAAATTA
* *
66914657 ACATGTATAACCGTGGTATATCCACTTATCACCACGTT
1 ACATGTATAACCATGGTATATCCACTTAGCACCACGTT
* *
66914695 ACATGTTTAACTATGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCATGGTATATCCACTTAGCACCACG-T--T
* *
66914736 GAATCAATATATGTAACCATGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCATGGTATATCCACTTAGCACCACGTT
* * * * *
66914780 ACATGTATCAATATGTGTAATCATGTTATATCCATTTAGCACAACGCT
1 ACATG------TA----TAACCATGGTATATCCACTTAGCACCACGTT
* *
66914828 ACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCATGGTATATCCACTTAGCACCACGTT
66914866 TATCCATTCC
Statistics
Matches: 132, Mismatches: 22, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
38 57 0.43
39 1 0.01
40 2 0.02
41 2 0.02
42 3 0.02
43 1 0.01
44 2 0.02
45 3 0.02
46 3 0.02
47 27 0.20
48 31 0.23
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCATGGTATATCCACTTAGCACCACGTT
Found at i:66914811 original size:48 final size:48
Alignment explanation
Indices: 66914702--66914835 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 48
66914692 GTTACATGTT
* *
66914702 TAACTATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
66914749 TAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * * * * *
66914797 TAATCATGTTATATCCATTTAGCACAACGCTACACGTAT
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
66914836 AACCGTGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 30 0.40
48 45 0.60
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (48 bp):
TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:66921766 original size:44 final size:43
Alignment explanation
Indices: 66921707--66921906 Score: 152
Period size: 44 Copynumber: 4.6 Consensus size: 43
66921697 AATTTCAATA
* * *
66921707 TCTGTTCTGCGTGTAAGACCACGTCTGAGACATTGACATCGATT
1 TCTGTTTTGCATGTAAGACCACGTCTGAGACATTGGCATCG-TT
** * *
66921751 TCTGTTTTGCATGTAAGATGACGTCTAAGACGTTGGCATCGATT
1 TCTGTTTTGCATGTAAGACCACGTCTGAGACATTGGCATCG-TT
* * * * * * *
66921795 TTTATTTTGCGTGTAAGACCATGTATGGGACATTGGCATCGTA
1 TCTGTTTTGCATGTAAGACCACGTCTGAGACATTGGCATCGTT
* * ** * *
66921838 TCTGATTT-CATGTAAAACCTTGTCTGGGACAGTGGCATCGTT
1 TCTGTTTTGCATGTAAGACCACGTCTGAGACATTGGCATCGTT
* * *
66921880 ATTTG-ATTACATGTAAGACCACGTCTG
1 -TCTGTTTTGCATGTAAGACCACGTCTG
66921907 GGACGTTAGC
Statistics
Matches: 122, Mismatches: 32, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
42 30 0.25
43 24 0.20
44 68 0.56
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (43 bp):
TCTGTTTTGCATGTAAGACCACGTCTGAGACATTGGCATCGTT
Found at i:66921866 original size:42 final size:43
Alignment explanation
Indices: 66921806--66921910 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 43
66921796 TTATTTTGCG
* * *
66921806 TGTAAGACCATGTATGGGACATTGGCATCG-TATCTGATTTCA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGTTATCTGATTACA
* * *
66921848 TGTAAAACCTTGTCTGGGACAGTGGCATCGTTATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGTTATCTGATTACA
*
66921891 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
66921911 GTTAGCATTG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGTTATCTGATTACA
Found at i:66924579 original size:42 final size:43
Alignment explanation
Indices: 66924481--66924589 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 43
66924471 CAAGTACAAC
* * *
66924481 GCCGAAGTCCCGGAC-GTGGTCTTACATGTAATTCAATATCGAT
1 GCCGATGTCCCAGACAG-GGTCTTACACGTAATTCAATATCGAT
** *
66924524 GCCTCTATCCCAGACAGGGTCTTACACGTAA-TCAGATA-CGAT
1 GCCGATGTCCCAGACAGGGTCTTACACGTAATTCA-ATATCGAT
*
66924566 GCCGATGTCCCAGACATGGTCTTA
1 GCCGATGTCCCAGACAGGGTCTTA
66924590 TATGTAAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
42 27 0.50
43 26 0.48
44 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (43 bp):
GCCGATGTCCCAGACAGGGTCTTACACGTAATTCAATATCGAT
Found at i:66943035 original size:55 final size:55
Alignment explanation
Indices: 66942948--66943201 Score: 257
Period size: 55 Copynumber: 4.8 Consensus size: 55
66942938 ATTAGGGTTT
* * *
66942948 AAGGATACAATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCATAAGGC
* *
66943003 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-ATAAGGC
* * * *
66943058 AAAGG-TCCCATGTAAGACCATG-CGAAGGCATGGC-ATGGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAAGTTTCATAAGGC
*
66943111 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCATAAGGC
* * *
66943160 AAGGATACCATGTAAGA-CATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
66943202 GTACCCGTGC
Statistics
Matches: 171, Mismatches: 19, Indels: 25
0.80 0.09 0.12
Matches are distributed among these distances:
47 2 0.01
48 19 0.11
49 17 0.10
52 6 0.04
53 41 0.24
54 16 0.09
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCATAAGGC
Found at i:66943154 original size:108 final size:110
Alignment explanation
Indices: 66942957--66943157 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
66942947 TAAGGATACA
* *
66942957 ATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
66943022 ATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCCC
66 ATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCCC
* *
66943067 ATGTAAGACCATGCGAAGGCATGGC-ATGGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGAC
* *
66943129 CATGTCGAGACATGGCAATGGTAAGTTTC
65 CATGTCAAGACATGGCAATGATAAGTTTC
66943158 AAAAGGATAC
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 50 0.60
109 6 0.07
110 24 0.29
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGCAATGGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCCC
Found at i:66946379 original size:38 final size:38
Alignment explanation
Indices: 66946308--66946496 Score: 184
Period size: 38 Copynumber: 4.9 Consensus size: 38
66946298 ATTTGATGTG
* *
66946308 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
*
66946348 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* * *
66946386 TATCCGGGTTAAATCCCGCAGACTTCGTGTTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
66946424 TATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
** * *
66946462 TATCTAAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATC-CGGGTTAAA-TCCCGCAGGCTTCGTGCTGG
66946497 TGTTATGTTT
Statistics
Matches: 125, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
37 2 0.02
38 86 0.69
39 13 0.10
40 24 0.19
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:66947484 original size:16 final size:16
Alignment explanation
Indices: 66947463--66947493 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66947453 ATAAATTTGA
66947463 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
66947479 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
66947494 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:66977230 original size:40 final size:40
Alignment explanation
Indices: 66977132--66977434 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
66977122 TCCTCGTTCA
* * * * *
66977132 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
66977171 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
66977211 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66977251 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66977291 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
66977331 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
66977371 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
66977411 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66977435 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:66985214 original size:40 final size:40
Alignment explanation
Indices: 66985116--66985418 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
66985106 TCCTCGTTCA
* * * * *
66985116 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
66985155 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
66985195 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66985235 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66985275 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
66985315 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
66985355 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
66985395 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66985419 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:66990064 original size:46 final size:46
Alignment explanation
Indices: 66989996--66990132 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
66989986 TATATATAAA
* * * * *
66989996 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCGCATGTC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
* *
66990042 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
*
66990088 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATAT
66990133 ATACACTTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
Found at i:66990177 original size:47 final size:47
Alignment explanation
Indices: 66990106--66990343 Score: 300
Period size: 47 Copynumber: 5.1 Consensus size: 47
66990096 ACACATTTCG
* * * * * *
66990106 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
66990153 CATTGGCCATTCTGCCTTGTCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
66990200 CATTGGTCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
66990247 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * ** *
66990294 CATTTGCCAATT-GGCCTTATCTCATATATACACATTCATATTCATCA
1 CATTGGCC-ATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
66990341 CAT
1 CAT
66990344 AAAATCCTAA
Statistics
Matches: 171, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 167 0.98
48 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.36
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:66994341 original size:40 final size:40
Alignment explanation
Indices: 66994297--66994612 Score: 569
Period size: 40 Copynumber: 7.9 Consensus size: 40
66994287 GAATACACAT
* *
66994297 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
* *
66994337 CACCAGTACGTATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
66994377 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
66994417 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
66994457 CACCAGCACATATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
66994497 CACCAGCACGTATGCTCTTCGGCACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
66994537 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
66994577 CTCCAGCACGTATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGAT
66994613 CATATATAAC
Statistics
Matches: 265, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 265 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:66996163 original size:46 final size:46
Alignment explanation
Indices: 66996095--66996230 Score: 170
Period size: 46 Copynumber: 3.0 Consensus size: 46
66996085 TATATATACA
* * * * *
66996095 CATCTCTTACATATCTCACATTAGCCATTTGGCTTTA-CT-ATATGTC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATA--TC
*
66996141 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
66996187 CATCTCATACACATTTCGCATTAGCCATTCGGC-TTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATAT
66996231 ATACACTTCC
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
45 10 0.12
46 65 0.81
47 2 0.03
48 3 0.04
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:66996462 original size:22 final size:22
Alignment explanation
Indices: 66996435--66996506 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
66996425 GTTCACATTC
66996435 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
66996457 ATCACATAT-ACGCATGTTC-ACATT
1 ATCACAT-TGGC-CA--TTCGGCCTT
66996481 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66996504 ATC
1 ATC
66996507 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 14 0.38
23 6 0.16
24 6 0.16
25 11 0.30
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66996571 original size:47 final size:47
Alignment explanation
Indices: 66996205--66996580 Score: 531
Period size: 47 Copynumber: 8.0 Consensus size: 47
66996195 ACACATTTCG
* * * * * *
66996205 CATTAGCCATTCGG-CTTACCACATATATACACT-TCCACGTTCACCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* * *
66996251 CATTGGCCATGCTGCCTTGTCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
66996298 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
66996345 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
66996392 CATTGGCTATTTGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
66996439 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
66996486 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
66996533 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
66996580 C
1 C
66996581 TTAAAATCCG
Statistics
Matches: 299, Mismatches: 29, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
46 12 0.04
47 287 0.96
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:67011015 original size:41 final size:42
Alignment explanation
Indices: 67010969--67011078 Score: 143
Period size: 41 Copynumber: 2.7 Consensus size: 42
67010959 GCATGAAACT
* *
67010969 CGGTGATGTGTATTCGGCCTT-GTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGCCTTCATGCCTAGCAGGCTTCGTGC
* *
67011010 CGGTGATGTGTATTGGGCCTTCATGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGCCTTCATGCCTAGCAGGCTTCGTGC
* * *
67011052 C-ATGATGTGTATTCGGTCTTAATGCCT
1 CGGTGATGTGTATTCGGCCTTCATGCCT
67011079 TGCATAATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 42 0.70
42 18 0.30
ACGTcount: A:0.13, C:0.21, G:0.31, T:0.35
Consensus pattern (42 bp):
CGGTGATGTGTATTCGGCCTTCATGCCTAGCAGGCTTCGTGC
Found at i:67011314 original size:56 final size:57
Alignment explanation
Indices: 67011248--67011355 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 57
67011238 CGAATGATTA
*
67011248 GAGGCACTGTGTATGC-AATTCCTTTAACCGAGCACTATGT-GGCGAGATCGGTAATT
1 GAGGCACTGTGTATGCGAATT-CTTCAACCGAGCACTATGTAGGCGAGATCGGTAATT
* * *
67011304 GAGGCACTGTGTGTGCGAGTTCTTCAACCGAGCACTATGTATGCGAGATCGG
1 GAGGCACTGTGTATGCGAATTCTTCAACCGAGCACTATGTAGGCGAGATCGG
67011356 CCAGTGGGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 33 0.72
57 13 0.28
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (57 bp):
GAGGCACTGTGTATGCGAATTCTTCAACCGAGCACTATGTAGGCGAGATCGGTAATT
Found at i:67013049 original size:67 final size:68
Alignment explanation
Indices: 67012965--67013106 Score: 180
Period size: 67 Copynumber: 2.1 Consensus size: 68
67012955 CTTAAAATTA
* * * * *
67012965 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATC-TTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
67013028 ATGT
65 ATGT
* * * *
67013032 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
67013097 TGT
66 TGT
67013100 AGCTGTC
1 AGCTGTC
67013107 TGGATCTGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
67 32 0.50
68 32 0.50
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:67015122 original size:43 final size:43
Alignment explanation
Indices: 67015074--67015190 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 43
67015064 GCATGAAACT
*
67015074 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
** *
67015117 CGGTGATGTGTATT-GGGCCTTCATGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
* *
67015159 CAGTGATGTGTATTCGGGTC-TTGTGCCTAGCA
1 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCA
67015191 TAATGCCGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 46 0.72
43 18 0.28
ACGTcount: A:0.12, C:0.21, G:0.33, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
Found at i:67015396 original size:54 final size:55
Alignment explanation
Indices: 67015331--67015464 Score: 148
Period size: 57 Copynumber: 2.4 Consensus size: 55
67015321 CGAATGAATA
* *
67015331 TGAGCATTATGTGTGCGA-AT-G-ATTAGAGGCACTGTGTATGCAAATTCCTTTAAC
1 TGAGCACTATGTGTGCGAGATCGAATT-GAGGCACTGTGTATGCAAATT-CTTCAAC
* * *
67015385 TGAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAGTTCTTCAAC
1 TGAGCACTATGTGTGCGAGATC-G-AATTGAGGCACTGTGTATGCAAATTCTTCAAC
* *
67015442 CGAGCACTATGTATGCGAGATCG
1 TGAGCACTATGTGTGCGAGATCG
67015465 GCCAGTGGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
54 17 0.25
55 2 0.03
56 1 0.01
57 27 0.40
58 18 0.26
59 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (55 bp):
TGAGCACTATGTGTGCGAGATCGAATTGAGGCACTGTGTATGCAAATTCTTCAAC
Found at i:67015459 original size:57 final size:58
Alignment explanation
Indices: 67015356--67015465 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
67015346 CGAATGATTA
* * *
67015356 GAGGCACTGTGTATGCAAATTCCTTTAACTGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
* * *
67015414 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTATGCGAGATCGG
1 GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGG
67015466 CCAGTGGGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 28 0.61
58 18 0.39
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
Found at i:67016465 original size:1 final size:1
Alignment explanation
Indices: 67016375--67016456 Score: 164
Period size: 1 Copynumber: 82.0 Consensus size: 1
67016365 TGATGTATGT
67016375 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
67016440 AAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAA
67016457 TCATAAAAAT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 81 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:67017637 original size:68 final size:68
Alignment explanation
Indices: 67017552--67017694 Score: 180
Period size: 68 Copynumber: 2.1 Consensus size: 68
67017542 CTTAAAATTA
* * * * * *
67017552 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCGTTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
67017616 ATGT
65 ATGT
* * * *
67017620 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
67017685 TGT
66 TGT
67017688 AGCTGTC
1 AGCTGTC
67017695 TGGATCTGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 63 0.98
69 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:67019717 original size:43 final size:43
Alignment explanation
Indices: 67019669--67019787 Score: 184
Period size: 43 Copynumber: 2.8 Consensus size: 43
67019659 GCATGAAACT
* *
67019669 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
67019712 CGGTGATGTGTATTCGGGCCTTCATGCCTAGTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
67019755 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCA
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
67019788 TAATGCCGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.12, C:0.22, G:0.33, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:67019994 original size:54 final size:55
Alignment explanation
Indices: 67019929--67020062 Score: 148
Period size: 57 Copynumber: 2.4 Consensus size: 55
67019919 CGAATGAATA
* *
67019929 TGAGCATTATGTGTGCGA-AT-G-ATTAGAGGCACTGTGTATGCAAATTCCTTTAAC
1 TGAGCACTATGTGTGCGAGATCGAATT-GAGGCACTGTGTATGCAAATT-CTTCAAC
* * *
67019983 TGAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAGTTCTTCAAC
1 TGAGCACTATGTGTGCGAGATC-G-AATTGAGGCACTGTGTATGCAAATTCTTCAAC
* *
67020040 CGAGCACTATGTATGCGAGATCG
1 TGAGCACTATGTGTGCGAGATCG
67020063 GCCAGTGGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
54 17 0.25
55 2 0.03
56 1 0.01
57 27 0.40
58 18 0.26
59 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (55 bp):
TGAGCACTATGTGTGCGAGATCGAATTGAGGCACTGTGTATGCAAATTCTTCAAC
Found at i:67020057 original size:57 final size:58
Alignment explanation
Indices: 67019954--67020063 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
67019944 CGAATGATTA
* * *
67019954 GAGGCACTGTGTATGCAAATTCCTTTAACTGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
* * *
67020012 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTATGCGAGATCGG
1 GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGG
67020064 CCAGTGGGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 28 0.61
58 18 0.39
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
Found at i:67022448 original size:68 final size:68
Alignment explanation
Indices: 67022363--67022505 Score: 180
Period size: 68 Copynumber: 2.1 Consensus size: 68
67022353 CTTAAAATTA
* * * * * *
67022363 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCGTTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
67022427 ATGT
65 ATGT
* * * *
67022431 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
67022496 TGT
66 TGT
67022499 AGCTGTC
1 AGCTGTC
67022506 TGGATCTGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 63 0.98
69 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAAATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:67024559 original size:43 final size:42
Alignment explanation
Indices: 67024511--67024628 Score: 182
Period size: 43 Copynumber: 2.8 Consensus size: 42
67024501 GCATGAAACT
* *
67024511 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGT-C
*
67024554 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCGTC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTC
* *
67024596 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCA
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
67024629 TAATGCCGGT
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.34
Consensus pattern (42 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTC
Found at i:67024835 original size:54 final size:55
Alignment explanation
Indices: 67024770--67024903 Score: 148
Period size: 57 Copynumber: 2.4 Consensus size: 55
67024760 CGAATGAATA
* *
67024770 TGAGCATTATGTGTGCGA-AT-G-ATTAGAGGCACTGTGTATGCAAATTCCTTTAAC
1 TGAGCACTATGTGTGCGAGATCGAATT-GAGGCACTGTGTATGCAAATT-CTTCAAC
* * *
67024824 TGAGCACTATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCGAGTTCTTCAAC
1 TGAGCACTATGTGTGCGAGATC-G-AATTGAGGCACTGTGTATGCAAATTCTTCAAC
* *
67024881 CGAGCACTATGTATGCGAGATCG
1 TGAGCACTATGTGTGCGAGATCG
67024904 GCCAGTGGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
54 17 0.25
55 2 0.03
56 1 0.01
57 27 0.40
58 18 0.26
59 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (55 bp):
TGAGCACTATGTGTGCGAGATCGAATTGAGGCACTGTGTATGCAAATTCTTCAAC
Found at i:67024898 original size:57 final size:58
Alignment explanation
Indices: 67024795--67024904 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
67024785 CGAATGATTA
* * *
67024795 GAGGCACTGTGTATGCAAATTCCTTTAACTGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
* * *
67024853 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTATGCGAGATCGG
1 GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGG
67024905 CCAGTGGGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 28 0.61
58 18 0.39
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTATGCAAATTCCTTCAACCGAGCACTATGTATGCGAGATCGGTAATT
Found at i:67027307 original size:68 final size:68
Alignment explanation
Indices: 67027223--67027369 Score: 181
Period size: 68 Copynumber: 2.2 Consensus size: 68
67027213 CTTAAAATTA
* * *
67027223 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-T-CATCATTTATGCTGTTTTATTTGGTA
1 AGCTGTTCGAATGTGTTAAATTCACTATTCAAAGCACTACA--ATATATGCTGTTTTATTTAGTA
67027286 AATGT
64 AATGT
* * * * *
67027291 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACAATATATGCTGTTTTATTTAGTAAA
1 AGCTGTTCGAATGTGTTAAATTCACTATTCAAAGCACTACAATATATGCTGTTTTATTTAGTAAA
67027356 TGT
66 TGT
*
67027359 AGTTGTTCGAA
1 AGCTGTTCGAA
67027370 GCTGTTGATT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
68 64 0.96
69 1 0.01
70 2 0.03
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.41
Consensus pattern (68 bp):
AGCTGTTCGAATGTGTTAAATTCACTATTCAAAGCACTACAATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:67032427 original size:26 final size:26
Alignment explanation
Indices: 67032398--67032505 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
67032388 TGGTACAATT
67032398 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
67032424 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67032450 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67032476 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67032502 TGAT
1 TGAT
67032506 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67034152 original size:54 final size:53
Alignment explanation
Indices: 67034070--67034210 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
67034060 AGGAAGCGTC
* *
67034070 CTGGTGGTTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
67034124 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
67034178 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
67034211 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:67034221 original size:27 final size:27
Alignment explanation
Indices: 67034070--67034228 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
67034060 AGGAAGCGTC
* * *
67034070 CTGGTGGTTATGCCACAATTATTTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
67034097 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
67034124 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
67034151 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
67034178 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
67034205 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
67034229 GCATCCTCGC
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:67044430 original size:15 final size:16
Alignment explanation
Indices: 67044407--67044440 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
67044397 AGAGTAACAC
67044407 CAACCTTTTTCTT-CT
1 CAACCTTTTTCTTACT
*
67044422 CAACTTTTTTCTTACT
1 CAACCTTTTTCTTACT
67044438 CAA
1 CAA
67044441 TCCCTTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (16 bp):
CAACCTTTTTCTTACT
Found at i:67045858 original size:20 final size:21
Alignment explanation
Indices: 67045833--67045880 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
67045823 GATAAAATCG
*
67045833 ATACCAGGATAAAAT-TATCA
1 ATACCAGAATAAAATATATCA
67045853 ATACCA-AATAAAATATATCA
1 ATACCAGAATAAAATATATCA
67045873 ATACCAGA
1 ATACCAGA
67045881 TCGATGGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 17 0.68
21 1 0.04
ACGTcount: A:0.54, C:0.17, G:0.06, T:0.23
Consensus pattern (21 bp):
ATACCAGAATAAAATATATCA
Found at i:67046514 original size:6 final size:6
Alignment explanation
Indices: 67046503--67046527 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67046493 CAAACTTTTT
67046503 AAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA A
67046528 CATGTTGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:67050981 original size:29 final size:29
Alignment explanation
Indices: 67050906--67050985 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
67050896 CGCGACCTAG
* **
67050906 TTCATGACTCGCCAGATGGAGTCTGCCATC
1 TTCATG-CTCGCCAGATGGAGCCCACCATC
* * *
67050936 TTCATGTTCACCGGATGGAGCCCACCATC
1 TTCATGCTCGCCAGATGGAGCCCACCATC
*
67050965 TTCATGCTCGCTAGATGGAGC
1 TTCATGCTCGCCAGATGGAGC
67050986 TCCCCAGCTT
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 34 0.85
30 6 0.15
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (29 bp):
TTCATGCTCGCCAGATGGAGCCCACCATC
Found at i:67060771 original size:66 final size:67
Alignment explanation
Indices: 67060642--67060771 Score: 156
Period size: 66 Copynumber: 1.9 Consensus size: 67
67060632 GGGATGTATC
* * *
67060642 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTTATTCCAAGTGA
1 CCATGTAGACAAGAGAGCAAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
67060707 AGGACA
62 AGGACA
* *
67060713 CCATGTAGACAAGAGAGCAAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCAACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
67060772 TTCACCATGT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
66 23 0.43
67 9 0.17
68 1 0.02
71 20 0.38
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCAACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:67066983 original size:18 final size:19
Alignment explanation
Indices: 67066950--67066985 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67066940 TTAAATTTAG
*
67066950 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
67066969 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
67066986 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:67067438 original size:68 final size:66
Alignment explanation
Indices: 67067366--67067513 Score: 174
Period size: 67 Copynumber: 2.2 Consensus size: 66
67067356 CATCATGTGT
* * * *
67067366 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67067429 TGTAG
62 TGTAG
* * *
67067434 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67067499 AG
65 AG
67067501 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
67067514 GAGATAAACT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 3 0.04
67 27 0.39
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67070104 original size:40 final size:40
Alignment explanation
Indices: 67069922--67070144 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
67069912 TCCTCGTTCA
* * * * *
67069922 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
67069961 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
67070001 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
67070041 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
67070081 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
67070121 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
67070145 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:67070153 original size:41 final size:41
Alignment explanation
Indices: 67070076--67070153 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67070066 TTAGTATCTC
* * *
67070076 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67070117 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67070154 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Done.