Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 199 of 373
Found at i:67079283 original size:11 final size:11
Alignment explanation
Indices: 67079257--67079316 Score: 81
Period size: 11 Copynumber: 5.7 Consensus size: 11
67079247 ATTTTGATAT
*
67079257 ACATGATTTG-
1 ACATGATATGC
67079267 ACATGATATGC
1 ACATGATATGC
67079278 ACATGATATGC
1 ACATGATATGC
67079289 ACATGATATG-
1 ACATGATATGC
*
67079299 -TATGATATGC
1 ACATGATATGC
67079309 ACATGATA
1 ACATGATA
67079317 AATTCATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
9 8 0.18
10 9 0.20
11 27 0.61
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:67079458 original size:25 final size:25
Alignment explanation
Indices: 67079364--67079453 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
67079354 GAGGAAGTGC
* *
67079364 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAATTTATCG
*
67079389 AAAAGGGTTTTGCCCCAATTTATCG
1 AAAAGGGCTTTGCCCCAATTTATCG
*
67079414 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAATTTATCG
*
67079439 GAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCC
67079454 TAGTTATTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAATTTATCG
Found at i:67079714 original size:31 final size:31
Alignment explanation
Indices: 67079677--67079756 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
67079667 TCATTTGCAG
* *
67079677 TAAAGGCTTCGGCCTAGTGATATGAATAATGA
1 TAAAGGCTTCGGCCCAGTGATAAGAATAAT-A
67079709 -AAAGGCTTCGGCCCAGTGATAAGAATAATA
1 TAAAGGCTTCGGCCCAGTGATAAGAATAATA
*
67079739 TAAAGGCTTCGACCCAGT
1 TAAAGGCTTCGGCCCAGT
67079757 ATATGCTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.02
31 43 0.98
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (31 bp):
TAAAGGCTTCGGCCCAGTGATAAGAATAATA
Found at i:67099107 original size:40 final size:40
Alignment explanation
Indices: 67099055--67099246 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
67099045 ATAACCACAA
* * *
67099055 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
67099095 GTACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
67099135 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
67099175 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
67099215 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67099247 CATTTAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:67099139 original size:80 final size:80
Alignment explanation
Indices: 67099026--67099245 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 80
67099016 ACCCAAGTTT
* * * * * * * * *
67099026 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
* *
67099089 CAACTCGTACAAATGC
66 C-ACTAGCACAAATGC
* * *
67099105 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
67099169 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
67099185 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
67099246 TCATTTAAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
79 12 0.10
80 97 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:67101564 original size:27 final size:27
Alignment explanation
Indices: 67101522--67101654 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
67101512 GTCACTAGAT
67101522 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
67101548 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
67101575 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
67101602 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
67101629 TCAAATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
67101655 GACGCTTCCT
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
26 11 0.11
27 83 0.86
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:67101598 original size:54 final size:54
Alignment explanation
Indices: 67101518--67101654 Score: 231
Period size: 54 Copynumber: 2.5 Consensus size: 54
67101508 CGAAGTCACT
*
67101518 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
67101572 AGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
67101626 AGATCAAATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
67101655 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 73 0.94
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:67103269 original size:26 final size:26
Alignment explanation
Indices: 67103238--67103345 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
67103228 TGAAATGCCC
*
67103238 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
67103264 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
67103290 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
67103316 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67103342 ATCA
1 ATCA
67103346 AATTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67111732 original size:69 final size:69
Alignment explanation
Indices: 67111621--67111758 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
67111611 TGTGGTCTTA
67111621 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
1 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
67111686 CATG
66 CATG
67111690 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
1 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
67111755 CATG
66 CATG
67111759 GCTTTTCAGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (69 bp):
CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
CATG
Found at i:67133562 original size:23 final size:23
Alignment explanation
Indices: 67133532--67133576 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
67133522 GAAGCATGTA
67133532 AATGCTTACCCCTCTCTTTTCCT
1 AATGCTTACCCCTCTCTTTTCCT
67133555 AATGCTTACCCCTCTCTTTTCC
1 AATGCTTACCCCTCTCTTTTCC
67133577 CTGTCTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.40, G:0.04, T:0.42
Consensus pattern (23 bp):
AATGCTTACCCCTCTCTTTTCCT
Found at i:67137528 original size:14 final size:13
Alignment explanation
Indices: 67137505--67137536 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
67137495 GGTATATCAA
67137505 AACAATAATTAAG
1 AACAATAATTAAG
67137518 AACACATAATTAAG
1 AACA-ATAATTAAG
67137532 AACAA
1 AACAA
67137537 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:67141917 original size:19 final size:19
Alignment explanation
Indices: 67141893--67141930 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
67141883 AGTTACATGG
67141893 TGTGATGTTATGTGACTAA
1 TGTGATGTTATGTGACTAA
67141912 TGTGATGTTATGTGACTAA
1 TGTGATGTTATGTGACTAA
67141931 CTTGTTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (19 bp):
TGTGATGTTATGTGACTAA
Found at i:67143386 original size:15 final size:15
Alignment explanation
Indices: 67143366--67143396 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67143356 TCCTTTGGCT
67143366 TGCATTGTAACACCC
1 TGCATTGTAACACCC
67143381 TGCATTGTAACACCC
1 TGCATTGTAACACCC
67143396 T
1 T
67143397 ATACCCAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (15 bp):
TGCATTGTAACACCC
Found at i:67144635 original size:28 final size:28
Alignment explanation
Indices: 67144595--67144672 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
67144585 CTATTTAAAG
67144595 GTTTAT-GCATTATGGGTTTAGGGATT-AT
1 GTTTATGGC-TTATGGGTTTAGGG-TTGAT
* * *
67144623 GTTTATGGCTTATGGCTTAAGGGTTGGT
1 GTTTATGGCTTATGGGTTTAGGGTTGAT
* *
67144651 GTTTAAGGGTTATGGG-TTAGGG
1 GTTTATGGCTTATGGGTTTAGGG
67144673 GTTAGGGGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
27 7 0.17
28 32 0.78
29 2 0.05
ACGTcount: A:0.18, C:0.04, G:0.36, T:0.42
Consensus pattern (28 bp):
GTTTATGGCTTATGGGTTTAGGGTTGAT
Found at i:67144669 original size:7 final size:7
Alignment explanation
Indices: 67144657--67144727 Score: 70
Period size: 7 Copynumber: 9.9 Consensus size: 7
67144647 TGGTGTTTAA
*
67144657 GGGTTAT
1 GGGTTAG
67144664 GGGTTAG
1 GGGTTAG
67144671 GGGTTAG
1 GGGTTAG
67144678 GGGTTTAG
1 GGG-TTAG
*
67144686 GGGTTAT
1 GGGTTAG
*
67144693 GGGTTAAT
1 GGGTT-AG
*
67144701 GGTTTAG
1 GGGTTAG
*
67144708 GGGTTAA
1 GGGTTAG
*
67144715 GGTTTAG
1 GGGTTAG
67144722 GGGTTA
1 GGGTTA
67144728 TTATTTTGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
7 40 0.75
8 13 0.25
ACGTcount: A:0.17, C:0.00, G:0.46, T:0.37
Consensus pattern (7 bp):
GGGTTAG
Found at i:67144674 original size:28 final size:28
Alignment explanation
Indices: 67144604--67144698 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
67144594 GGTTTATGCA
* * * *
67144604 TTATGGGTTTAGGGATT-ATGTTTATGGC
1 TTATGGG-TTAGGGGTTGGTGTTTAAGGG
* *
67144632 TTATGGCTTAAGGGTTGGTGTTTAAGGG
1 TTATGGGTTAGGGGTTGGTGTTTAAGGG
* *
67144660 TTATGGGTTAGGGGTTAGGGGTTTAGGGG
1 TTATGGGTTAGGGGTT-GGTGTTTAAGGG
67144689 TTATGGGTTA
1 TTATGGGTTA
67144699 ATGGTTTAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 7 0.13
28 28 0.51
29 20 0.36
ACGTcount: A:0.17, C:0.02, G:0.40, T:0.41
Consensus pattern (28 bp):
TTATGGGTTAGGGGTTGGTGTTTAAGGG
Found at i:67144690 original size:22 final size:22
Alignment explanation
Indices: 67144664--67144726 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
67144654 TAAGGGTTAT
*
67144664 GGGTTAGGGGTTAGGGGTTTAG
1 GGGTTAAGGGTTAGGGGTTTAG
* **
67144686 GGGTTATGGGTTAATGGTTTAG
1 GGGTTAAGGGTTAGGGGTTTAG
*
67144708 GGGTTAAGGTTTAGGGGTT
1 GGGTTAAGGGTTAGGGGTT
67144727 ATTATTTTGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.37
Consensus pattern (22 bp):
GGGTTAAGGGTTAGGGGTTTAG
Found at i:67144718 original size:14 final size:14
Alignment explanation
Indices: 67144639--67144727 Score: 81
Period size: 14 Copynumber: 6.2 Consensus size: 14
67144629 GGCTTATGGC
*
67144639 TTAAGGGTT-GGTGT
1 TTAAGGGTTAGG-GG
*
67144653 TTAAGGGTTATGGG
1 TTAAGGGTTAGGGG
*
67144667 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
67144681 TTTAGGGGTTATGGG
1 -TTAAGGGTTAGGGG
*
67144696 TTAATGGTTTAGGGG
1 TTAA-GGGTTAGGGG
*
67144711 TTAAGGTTTAGGGG
1 TTAAGGGTTAGGGG
67144725 TTA
1 TTA
67144728 TTATTTTGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
14 38 0.59
15 26 0.41
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:67148367 original size:9 final size:9
Alignment explanation
Indices: 67148345--67148704 Score: 372
Period size: 9 Copynumber: 40.3 Consensus size: 9
67148335 CATAATTAAA
67148345 TTACA-AAC
1 TTACATAAC
*
67148353 TTACATAAT
1 TTACATAAC
*
67148362 TTACATAAT
1 TTACATAAC
67148371 TTACATAAC
1 TTACATAAC
*
67148380 ATACATAAC
1 TTACATAAC
*
67148389 TTA-ACAAC
1 TTACATAAC
*
67148397 TTACATGAC
1 TTACATAAC
*
67148406 TCACATAAC
1 TTACATAAC
* *
67148415 TTATATAAT
1 TTACATAAC
67148424 TTACATAAC
1 TTACATAAC
*
67148433 TCACATAAC
1 TTACATAAC
*
67148442 ATACATAAC
1 TTACATAAC
*
67148451 TTA-ACAAC
1 TTACATAAC
* *
67148459 TTACACAAT
1 TTACATAAC
67148468 TTACATAAC
1 TTACATAAC
*
67148477 TCACATAAC
1 TTACATAAC
* *
67148486 ATACAAAAC
1 TTACATAAC
*
67148495 TTA-ACAAC
1 TTACATAAC
67148503 TTACATAAC
1 TTACATAAC
*
67148512 TTACATAAT
1 TTACATAAC
67148521 TTACATAAC
1 TTACATAAC
*
67148530 TCACATAAC
1 TTACATAAC
*
67148539 ATACATAACAAC
1 TTACAT---AAC
67148551 TTACATAAC
1 TTACATAAC
*
67148560 TCACATAAC
1 TTACATAAC
*
67148569 TTACATAAT
1 TTACATAAC
67148578 TTACATAAC
1 TTACATAAC
*
67148587 TCACATAAC
1 TTACATAAC
67148596 TTACATAAC
1 TTACATAAC
*
67148605 TTA-ACAAC
1 TTACATAAC
67148613 TTACATAAC
1 TTACATAAC
*
67148622 TCACATAAC
1 TTACATAAC
* *
67148631 TTACGTAAT
1 TTACATAAC
*
67148640 TTACATAAA
1 TTACATAAC
*
67148649 TCACATAAC
1 TTACATAAC
67148658 TTACATAAC
1 TTACATAAC
*
67148667 TTA-ACAAC
1 TTACATAAC
67148675 TTACATAAC
1 TTACATAAC
*
67148684 TCACATAAC
1 TTACATAAC
67148693 TTACATAAC
1 TTACATAAC
67148702 TTA
1 TTA
67148705 ACTAATACAT
Statistics
Matches: 287, Mismatches: 56, Indels: 17
0.80 0.16 0.05
Matches are distributed among these distances:
8 40 0.14
9 239 0.83
12 8 0.03
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (9 bp):
TTACATAAC
Found at i:67148423 original size:53 final size:54
Alignment explanation
Indices: 67148345--67148701 Score: 388
Period size: 53 Copynumber: 6.7 Consensus size: 54
67148335 CATAATTAAA
*
67148345 TTACA-AACTTACATAATTTACATAATTTACATAACATACATAACTTA-ACAAC
1 TTACATAACTTACATAATTTACATAACTTACATAACATACATAACTTACACAAC
* * * * * * *
67148397 TTACATGACTCACATAACTTATATAATTTACATAAC-TCACATAACATACATAAC
1 TTACATAACTTACATAATTTACATAACTTACATAACAT-ACATAACTTACACAAC
* * * *
67148451 TTA-ACAACTTACACAATTTACATAACTCACATAACATACAAAACTTA-ACAAC
1 TTACATAACTTACATAATTTACATAACTTACATAACATACATAACTTACACAAC
* *
67148503 TTACATAACTTACATAATTTACATAACTCACATAACATACATAACAACTTACATAAC
1 TTACATAACTTACATAATTTACATAACTTACATAACATACAT---AACTTACACAAC
* * *
67148560 TCACATAACTTACATAATTTACATAACTCACATAACTTACATAACTTA-ACAAC
1 TTACATAACTTACATAATTTACATAACTTACATAACATACATAACTTACACAAC
* * * * *
67148613 TTACATAACTCACATAACTTACGTAATTTACATAA-ATCACATAACTTACATAAC
1 TTACATAACTTACATAATTTACATAACTTACATAACAT-ACATAACTTACACAAC
* * *
67148667 TTA-ACAACTTACATAACTCACATAACTTACATAAC
1 TTACATAACTTACATAATTTACATAACTTACATAAC
67148702 TTAACTAATA
Statistics
Matches: 256, Mismatches: 37, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
52 14 0.05
53 171 0.67
54 21 0.08
56 6 0.02
57 44 0.17
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (54 bp):
TTACATAACTTACATAATTTACATAACTTACATAACATACATAACTTACACAAC
Found at i:67148423 original size:62 final size:62
Alignment explanation
Indices: 67148345--67148704 Score: 368
Period size: 62 Copynumber: 5.8 Consensus size: 62
67148335 CATAATTAAA
* * * * * *
67148345 TTACA-AACTTACATAATTTACATAATTTACATAACATACATAACTTA-ACAACTTACATGAC
1 TTACATAACTTA-ACAACTTACATAACTCACATAACTTACATAACTTACACAACTTACATAAC
* * * * * *
67148406 TCACATAACTTATATAATTTACATAACTCACATAACATACATAACTTA-ACAACTTACACAAT
1 TTACATAACTTA-ACAACTTACATAACTCACATAACTTACATAACTTACACAACTTACATAAC
* * * * * * * *
67148468 TTACATAACTCACATAACATACAAAACTTA-ACAACTTACATAACTTACATAATTTACATAAC
1 TTACATAACTTA-ACAACTTACATAACTCACATAACTTACATAACTTACACAACTTACATAAC
* * * *
67148530 TCACATAACATACATAACAACTTACATAACTCACATAACTTACATAATTTACATAACTCACATAA
1 TTACATAAC-T---TAACAACTTACATAACTCACATAACTTACATAACTTACACAACTTACATAA
67148595 C
62 C
* * * * *
67148596 TTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAATCACATAAC
1 TTACATAACTTAACAACTTACATAACTCACATAACTTACATAACTTACACAACTTACATAAC
67148658 TTACATAACTTAACAACTTACATAACTCACATAACTTACATAACTTA
1 TTACATAACTTAACAACTTACATAACTCACATAACTTACATAACTTA
67148705 ACTAATACAT
Statistics
Matches: 257, Mismatches: 35, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
61 19 0.07
62 186 0.72
63 1 0.00
65 14 0.05
66 37 0.14
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (62 bp):
TTACATAACTTAACAACTTACATAACTCACATAACTTACATAACTTACACAACTTACATAAC
Found at i:67148556 original size:21 final size:21
Alignment explanation
Indices: 67148527--67148568 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
67148517 TAATTTACAT
67148527 AACTCACATAACAT-ACATAAC
1 AACTCACATAAC-TCACATAAC
*
67148548 AACTTACATAACTCACATAAC
1 AACTCACATAACTCACATAAC
67148569 TTACATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (21 bp):
AACTCACATAACTCACATAAC
Found at i:67148702 original size:44 final size:44
Alignment explanation
Indices: 67148345--67148704 Score: 331
Period size: 44 Copynumber: 8.3 Consensus size: 44
67148335 CATAATTAAA
* * * *
67148345 TTACA-AACTTACATAATTTACATAATTTACATAACATACATAAC
1 TTACATAACTTACATAACTTA-ACAACTTACATAACTTACATAAC
* * * * * *
67148389 TTA-ACAACTTACATGACTCACATAACTTATATAATTTACATAAC
1 TTACATAACTTACATAACTTA-ACAACTTACATAACTTACATAAC
* * * *
67148433 TCACATAACATACATAACTTAACAACTTACACAATTTACATAAC
1 TTACATAACTTACATAACTTAACAACTTACATAACTTACATAAC
* * * *
67148477 TCACATAACATACAAAACTTAACAACTTACATAACTTACATAAT
1 TTACATAACTTACATAACTTAACAACTTACATAACTTACATAAC
* * *
67148521 TTACATAACTCACATAACAT-AC-A--TA-ACAACTTACATAAC
1 TTACATAACTTACATAACTTAACAACTTACATAACTTACATAAC
* * * *
67148560 TCACATAACTTACATAATTTACATAACTCACATAACTTACATAAC
1 TTACATAACTTACATAACTTA-ACAACTTACATAACTTACATAAC
* * * * * *
67148605 TTA-ACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
1 TTACATAACTTACATAACTTA-ACAACTTACATAACTTACATAAC
* *
67148649 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAAC
1 TTACATAACTTACATAACTTAACAACTTACATAACTTACATAAC
67148693 TTACATAACTTA
1 TTACATAACTTA
67148705 ACTAATACAT
Statistics
Matches: 257, Mismatches: 50, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
39 28 0.11
40 2 0.01
41 1 0.00
42 2 0.01
43 3 0.01
44 178 0.69
45 43 0.17
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (44 bp):
TTACATAACTTACATAACTTAACAACTTACATAACTTACATAAC
Found at i:67158756 original size:20 final size:20
Alignment explanation
Indices: 67158726--67158770 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
67158716 CTGTTTTATT
67158726 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
67158745 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
67158765 ATGGGC
1 ATGGGC
67158771 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:67158912 original size:27 final size:28
Alignment explanation
Indices: 67158860--67158912 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
67158850 TATTGTAATA
* *
67158860 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAACACTGATAT
67158888 GGGCTAAGGCCCA-ATTAACACTGAT
1 GGGCTAAGGCCCAGATTAACACTGAT
67158913 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAACACTGATAT
Found at i:67161292 original size:13 final size:14
Alignment explanation
Indices: 67161274--67161302 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67161264 TTATAAATAT
67161274 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
67161287 TTATAATGGTTTAA
1 TTATAATGGTTTAA
67161301 TT
1 TT
67161303 TGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:67161749 original size:21 final size:21
Alignment explanation
Indices: 67161720--67161792 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
67161710 TATAGCGGAT
67161720 GCAGCAGCGAGGGAGGCAGAG
1 GCAGCAGCGAGGGAGGCAGAG
* *
67161741 GCAGTAGCGAGGGAGGCAGCG
1 GCAGCAGCGAGGGAGGCAGAG
* * * *
67161762 GCAACAACGAGGGGGGTAGAG
1 GCAGCAGCGAGGGAGGCAGAG
* *
67161783 GTAGTAGCGA
1 GCAGCAGCGA
67161793 TGGCAGCAGA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.29, C:0.16, G:0.49, T:0.05
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAGAG
Found at i:67162246 original size:86 final size:86
Alignment explanation
Indices: 67162144--67162312 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 86
67162134 CGTTTGTAGA
* * *
67162144 AAAAGCGCCGCTAAAGGACATGACTTTTAGCGGCGTTTCTAG-TGAAAGCACCGCTAAAGGTCAT
1 AAAAGCGCCACGAAAGGACATGACTTTTAGCGGCGTTTCTAGAT-AAAGCACCGCTAAAAGTCAT
*
67162208 GATCTTTAGTGGCGTTTTTTGT
65 GATCTTTAGTGGCATTTTTTGT
* * * * *
67162230 AAAAGCGCCACGAAAGGTCATGACTTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAAGTCGTG
1 AAAAGCGCCACGAAAGGACATGACTTTTAGCGGCGTTTCTAGATAAAGCACCGCTAAAAGTCATG
67162295 ATCTTTAGTGGCATTTTT
66 ATCTTTAGTGGCATTTTT
67162313 CTCTTATAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 72 0.99
87 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (86 bp):
AAAAGCGCCACGAAAGGACATGACTTTTAGCGGCGTTTCTAGATAAAGCACCGCTAAAAGTCATG
ATCTTTAGTGGCATTTTTTGT
Found at i:67162302 original size:43 final size:43
Alignment explanation
Indices: 67162127--67162287 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 43
67162117 TCTGTAAAAA
* * *
67162127 TTAGCAGCGTTTGTAGAAAAAGCGCCGCTAAAGGACATGACTT
1 TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACTT
* * *
67162170 TTAGCGGCGTTTCTAGTGAAAGCACCGCTAAAGGTCATGA-TCT
1 TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACT-T
* * * * *
67162213 TTAGTGGCGTTTTTTGTAAAAGCGCCACGAAAGGTCATGACTT
1 TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACTT
*
67162256 TTAGCGGCGTTTGT-GGATAAAGCGCCGCTAAA
1 TTAGCGGCGTTTGTAGTA-AAAGCGCCGCTAAA
67162288 AGTCGTGATC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 3 0.03
43 93 0.96
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACTT
Found at i:67186466 original size:13 final size:13
Alignment explanation
Indices: 67186450--67186482 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
67186440 TTTGATTAAA
*
67186450 TTAGTTAATTAGT
1 TTAGATAATTAGT
67186463 TTAGATAATTAGT
1 TTAGATAATTAGT
67186476 TTA-ATAA
1 TTAGATAA
67186483 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:67191864 original size:6 final size:6
Alignment explanation
Indices: 67191845--67191891 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
67191835 TCCTCTTATT
* *
67191845 TTTTTA TTTCTA TTTTTA TTTTTA TTTTTA TTTTTA TGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
67191892 CGTTATAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:67194732 original size:13 final size:13
Alignment explanation
Indices: 67194716--67194748 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
67194706 TTTGATTAAA
*
67194716 TTAGTTAATTAGT
1 TTAGATAATTAGT
67194729 TTAGATAATTAGT
1 TTAGATAATTAGT
67194742 TTA-ATAA
1 TTAGATAA
67194749 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:67210572 original size:30 final size:30
Alignment explanation
Indices: 67210536--67210605 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
67210526 ATAAATGAGG
*
67210536 CCACACGGGCGTGCGACATGGCCGTGTATA
1 CCACACGGGCGTGCGACATGGCAGTGTATA
*
67210566 CCACACGGGCGTGCGACATGGCAGTGTATG
1 CCACACGGGCGTGCGACATGGCAGTGTATA
*
67210596 CCATACGGGC
1 CCACACGGGC
67210606 ATGTCCCAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (30 bp):
CCACACGGGCGTGCGACATGGCAGTGTATA
Found at i:67211231 original size:12 final size:13
Alignment explanation
Indices: 67211197--67211275 Score: 69
Period size: 12 Copynumber: 6.2 Consensus size: 13
67211187 TTATGTTGTA
*
67211197 ATTATTATT-ATT
1 ATTATTATTCTTT
*
67211209 ATTACTATTCTTT
1 ATTATTATTCTTT
67211222 ATTATT-TTC-TT
1 ATTATTATTCTTT
67211233 ATTATTATTCTTGT
1 ATTATTATTCTT-T
*
67211247 CATTATTAGTCTTT
1 -ATTATTATTCTTT
67211261 -TTAGTTATT-TTT
1 ATTA-TTATTCTTT
67211273 ATT
1 ATT
67211276 CTATTGGTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
11 8 0.15
12 20 0.36
13 14 0.25
14 2 0.04
15 11 0.20
ACGTcount: A:0.23, C:0.08, G:0.04, T:0.66
Consensus pattern (13 bp):
ATTATTATTCTTT
Found at i:67212842 original size:6 final size:6
Alignment explanation
Indices: 67212831--67212915 Score: 100
Period size: 6 Copynumber: 14.3 Consensus size: 6
67212821 ATTGAGTCCA
* * * * *
67212831 TTTATC TTTATC TTTATC TTTATG TTTATT TTTATT TTTATT TCTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
67212879 TCTA-T TTTATT TTTATT TTTATT TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
67212916 GTTTTCCTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
5 4 0.06
6 68 0.94
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:67212888 original size:17 final size:17
Alignment explanation
Indices: 67212866--67212903 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
67212856 TTATTTTTAT
67212866 TTTTATTTCTATTTCTA
1 TTTTATTTCTATTTCTA
* *
67212883 TTTTATTTTTATTTTTA
1 TTTTATTTCTATTTCTA
67212900 TTTT
1 TTTT
67212904 TATGTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTCTATTTCTA
Found at i:67212890 original size:23 final size:23
Alignment explanation
Indices: 67212860--67212915 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
67212850 TTATGTTTAT
67212860 TTTTATTTTTATTTCTATTTCTA
1 TTTTATTTTTATTTCTATTTCTA
* *
67212883 TTTTATTTTTATTTTTATTTTTA
1 TTTTATTTTTATTTCTATTTCTA
67212906 TGTTTATTTT
1 T-TTTATTTT
67212916 GTTTTCCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 22 0.73
24 8 0.27
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTTATTTTTATTTCTATTTCTA
Found at i:67212893 original size:29 final size:29
Alignment explanation
Indices: 67212831--67212920 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
67212821 ATTGAGTCCA
* *
67212831 TTTATCTTTATCTT-TATCTTTATGTTTATT
1 TTTATTTTTAT-TTCTATGTTTAT-TTTATT
67212861 TTTATTTTTATTTCTAT-TTCTATTTTATT
1 TTTATTTTTATTTCTATGTT-TATTTTATT
* *
67212890 TTTATTTTTATTTTTATGTTTATTTTGTT
1 TTTATTTTTATTTCTATGTTTATTTTATT
67212919 TT
1 TT
67212921 CCTATTTTGA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
29 36 0.67
30 18 0.33
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (29 bp):
TTTATTTTTATTTCTATGTTTATTTTATT
Found at i:67213138 original size:19 final size:21
Alignment explanation
Indices: 67213114--67213155 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
67213104 ATCTCCCTAC
67213114 ATTATGA-TAT-TTTGTTTGT
1 ATTATGATTATATTTGTTTGT
67213133 ATTATGATTTATATTTGTTTGT
1 ATTATGA-TTATATTTGTTTGT
67213155 A
1 A
67213156 CATTGATGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (21 bp):
ATTATGATTATATTTGTTTGT
Found at i:67215088 original size:30 final size:30
Alignment explanation
Indices: 67215054--67215113 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
67215044 CTATATTTGA
67215054 GATGTTTTTCTACTACAATATGAACTAAAC
1 GATGTTTTTCTACTACAATATGAACTAAAC
67215084 GATGTTTTTCTACTACAATATGAACTAAAC
1 GATGTTTTTCTACTACAATATGAACTAAAC
67215114 TCCCTAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (30 bp):
GATGTTTTTCTACTACAATATGAACTAAAC
Found at i:67220501 original size:26 final size:25
Alignment explanation
Indices: 67220450--67220502 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
67220440 GTTGAAATAG
* * *
67220450 TTATTTAATTAATATTTATAATAAT
1 TTATTTAATTAATACTTAAAAAAAT
*
67220475 TTATTTTATTAATAACTTAAAAAAAT
1 TTATTTAATTAAT-ACTTAAAAAAAT
67220501 TT
1 TT
67220503 TCAAATCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATTTAATTAATACTTAAAAAAAT
Found at i:67221331 original size:174 final size:173
Alignment explanation
Indices: 67221041--67221387 Score: 685
Period size: 174 Copynumber: 2.0 Consensus size: 173
67221031 TATAGTTCCA
67221041 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
1 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
67221106 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
66 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
67221171 TGATTCATGATAACATTTAAAAAAAAAAACTACATAAGATTTAG
131 TGATTCATGATAACATTT-AAAAAAAAAACTACATAAGATTTAG
67221215 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
1 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
67221280 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
66 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
67221345 TGATTCATGATAACATTTAAAAAAAAAACTACATAAGATTTAG
131 TGATTCATGATAACATTTAAAAAAAAAACTACATAAGATTTAG
67221388 CATATAATTT
Statistics
Matches: 173, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
173 25 0.14
174 148 0.86
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (173 bp):
ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
TGATTCATGATAACATTTAAAAAAAAAACTACATAAGATTTAG
Found at i:67230726 original size:22 final size:22
Alignment explanation
Indices: 67230687--67230728 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
67230677 ACTCATAAAT
*
67230687 GAAACAGAAAACATAATAGATA
1 GAAACAGAAAACAAAATAGATA
* *
67230709 GAAACATAAGACAAAATAGA
1 GAAACAGAAAACAAAATAGA
67230729 CATATACATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.10, G:0.14, T:0.12
Consensus pattern (22 bp):
GAAACAGAAAACAAAATAGATA
Found at i:67232093 original size:18 final size:17
Alignment explanation
Indices: 67232072--67232165 Score: 77
Period size: 18 Copynumber: 5.5 Consensus size: 17
67232062 TCTTTCACAC
67232072 TCTTTTTCAATTTCTTTT
1 TCTTTTTCAATTTC-TTT
*
67232090 TCTTGTTCACACTTTCTTT
1 TCTTTTTCA-A-TTTCTTT
* **
67232109 T-TATTTCAAAATCTTT
1 TCTTTTTCAATTTCTTT
*
67232125 TC-TTGT-AATTTCTTTT
1 TCTTTTTCAATTTC-TTT
*
67232141 TCCTTTTCAATTTCTTT
1 TCTTTTTCAATTTCTTT
67232158 TCTTTTTC
1 TCTTTTTC
67232166 TCTCAAGTGC
Statistics
Matches: 59, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
15 4 0.07
16 13 0.22
17 14 0.24
18 19 0.32
19 5 0.08
20 4 0.07
ACGTcount: A:0.14, C:0.19, G:0.02, T:0.65
Consensus pattern (17 bp):
TCTTTTTCAATTTCTTT
Found at i:67239659 original size:18 final size:18
Alignment explanation
Indices: 67239625--67239659 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67239615 TGTATCCTAA
*
67239625 TTTTCTTCCTCTAGATCC
1 TTTTCTTCCTCGAGATCC
*
67239643 TTTTCTTCCTCGGGATC
1 TTTTCTTCCTCGAGATC
67239660 TTCATCCTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.31, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTTCTTCCTCGAGATCC
Found at i:67250612 original size:98 final size:98
Alignment explanation
Indices: 67250457--67250637 Score: 238
Period size: 98 Copynumber: 1.8 Consensus size: 98
67250447 GGATGTTACA
* * * * * **
67250457 TATGGTCTTACACACCATAATTCCTCACGTTTAATGTCGTGGCGAACTACCTTGTGTTCATTGTC
1 TATGGTCTAACACACCATAATTCCCCACGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGTC
67250522 CTGCCAGACTACCATTTGTTGCCATAGTCGAAC
66 CTGCCAGACTACCATTTGTTGCCATAGTCGAAC
* * *
67250555 TATGGTCTAACACATCATAATTCCCCATGTTTAATGTCATGGA-AGACAACCCCGTGTTTATTGT
1 TATGGTCTAACACACCATAATTCCCCACGTTTAATGTCATGGAGA-ACAACCCCGTGTTCATTGT
**
67250619 CCTGGTAGACTACCATTTG
65 CCTGCCAGACTACCATTTG
67250638 GTTCTATGTC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
97 1 0.01
98 69 0.99
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (98 bp):
TATGGTCTAACACACCATAATTCCCCACGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGTC
CTGCCAGACTACCATTTGTTGCCATAGTCGAAC
Found at i:67250619 original size:27 final size:27
Alignment explanation
Indices: 67250577--67250628 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
67250567 CATCATAATT
67250577 CCCCATGTTTAATGTCATGGAAGACAA
1 CCCCATGTTTAATGTCATGGAAGACAA
* * * *
67250604 CCCCGTGTTTATTGTCCTGGTAGAC
1 CCCCATGTTTAATGTCATGGAAGAC
67250629 TACCATTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (27 bp):
CCCCATGTTTAATGTCATGGAAGACAA
Found at i:67250657 original size:98 final size:97
Alignment explanation
Indices: 67250456--67250682 Score: 232
Period size: 98 Copynumber: 2.4 Consensus size: 97
67250446 GGGATGTTAC
* * * * * * **
67250456 ATATGGTCTTACACACCATAATTCCTCACGTTTAATGTCGTGGCGAACTACCTTGTGTTCATTGT
1 ATATGGTCTTACACATCATAATTCCCCATGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGT
67250521 CCTGCCAGACTACCATTTGTTGCCATAGTCGA
66 CCTGCCAGACTACCATTTGTTGCCATAGTCGA
* *
67250553 ACTATGGTCTAACACATCATAATTCCCCATGTTTAATGTCATGGA-AGACAACCCCGTGTTTATT
1 A-TATGGTCTTACACATCATAATTCCCCATGTTTAATGTCATGGAGA-ACAACCCCGTGTTCATT
** *
67250617 GTCCTGGTAGACTACCATTTGGTT-CTAT-GTCTGA
64 GTCCTGCCAGACTACCATTT-GTTGCCATAGTC-GA
* *
67250651 GATATGGTGTTACACAT--T-ATTCCCAATGTTTA
1 -ATATGGTCTTACACATCATAATTCCCCATGTTTA
67250683 GCATCCTAAA
Statistics
Matches: 109, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
95 13 0.12
96 1 0.01
97 5 0.05
98 86 0.79
99 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (97 bp):
ATATGGTCTTACACATCATAATTCCCCATGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGT
CCTGCCAGACTACCATTTGTTGCCATAGTCGA
Found at i:67258890 original size:40 final size:40
Alignment explanation
Indices: 67258809--67259026 Score: 348
Period size: 40 Copynumber: 5.5 Consensus size: 40
67258799 CAACCAAGTA
** * * *
67258809 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
** *
67258848 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
67258888 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
67258928 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
67258968 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
67259008 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67259027 TTATCATCCG
Statistics
Matches: 168, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 12 0.07
40 156 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:67265120 original size:47 final size:47
Alignment explanation
Indices: 67265067--67265408 Score: 495
Period size: 47 Copynumber: 7.2 Consensus size: 47
67265057 AATTCTAAAT
67265067 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
67265114 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
67265163 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
67265210 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
67265259 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
67265306 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
67265353 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
67265400 TGTGATAAG
1 TGTGATAAG
67265409 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
47 177 0.67
49 88 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:67265231 original size:96 final size:96
Alignment explanation
Indices: 67265067--67265408 Score: 517
Period size: 96 Copynumber: 3.6 Consensus size: 96
67265057 AATTCTAAAT
* *
67265067 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
67265132 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * *
67265163 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
67265228 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * *
67265259 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
67265324 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * * * * **
67265353 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
67265409 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
94 52 0.23
96 175 0.77
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:67265311 original size:143 final size:143
Alignment explanation
Indices: 67265070--67265408 Score: 506
Period size: 143 Copynumber: 2.4 Consensus size: 143
67265060 TCTAAATTGT
67265070 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
* *
67265134 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 AATGTGATGAATGTGAAAGTG-ATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
67265199 AAGTGTATATGTGC
130 AAGTGTATATATGC
* *
67265213 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGC
*
67265278 CAATGTGATGAATGTGAAAGTG-TATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
65 CAATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
67265342 AAGTGTATATATGT
130 AAGTGTATATATGC
* * * * * *
67265356 GACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAG
67265409 TCCCGAAGGG
Statistics
Matches: 179, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 123 0.69
145 45 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
AATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGC
Found at i:67265582 original size:37 final size:37
Alignment explanation
Indices: 67265526--67265604 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67265516 TCGAACTCTA
* * *
67265526 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67265563 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67265600 AAGAC
1 AAGAC
67265605 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67271208 original size:40 final size:40
Alignment explanation
Indices: 67271127--67271304 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
67271117 CAACCAAGTA
** * *
67271127 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
67271166 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67271206 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67271246 CCTTTGGGACTTAGCCCAGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67271286 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67271305 TTATCATCCG
Statistics
Matches: 125, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.10
40 113 0.90
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67283717 original size:50 final size:50
Alignment explanation
Indices: 67283642--67283742 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
67283632 TTTATTTATC
67283642 AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
1 AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
*
67283692 AAGTTACATATTATTCACATAATCATTTTCATAATTGCCATTACATTTCT
1 AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
67283742 A
1 A
67283743 CTCTCGTTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.43
Consensus pattern (50 bp):
AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
Found at i:67289915 original size:21 final size:21
Alignment explanation
Indices: 67289891--67289947 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
67289881 TATGGTCCAA
*
67289891 GGGACACTCCCGTGTGACCCT
1 GGGACACACCCGTGTGACCCT
67289912 GGGACACACCCGTGTGACCCT
1 GGGACACACCCGTGTGACCCT
67289933 GGGACA-AGCCCGTGT
1 GGGACACA-CCCGTGT
67289948 TGGAGGCCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 1 0.03
21 33 0.97
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (21 bp):
GGGACACACCCGTGTGACCCT
Found at i:67292663 original size:20 final size:21
Alignment explanation
Indices: 67292638--67292677 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67292628 CACTTAAAAC
67292638 AGGGC-ACACGGC-CGTGTGGG
1 AGGGCAACAC-GCTCGTGTGGG
67292658 AGGGCAACACGCTCGTGTGG
1 AGGGCAACACGCTCGTGTGG
67292678 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.17, C:0.25, G:0.45, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCTCGTGTGGG
Found at i:67295640 original size:98 final size:97
Alignment explanation
Indices: 67295467--67295647 Score: 229
Period size: 98 Copynumber: 1.9 Consensus size: 97
67295457 GGGGTAAGAT
* * * *
67295467 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAAAGTTGATGTCGTGTCCCA
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTTGATGGCATATCCCA
* *
67295532 GATAGGTCTTACACTAACTTTCATATGTCGAG
66 GACAAGTCTTACACTAACTTTCATATGTCGAG
* ** ***
67295564 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGGTGTTGATGGCATATCC
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTTGATGGCATATCC
67295628 CAGACAAGTCTTACACTAAC
64 CAGACAAGTCTTACACTAAC
67295648 ACACAACAAG
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
96 17 0.24
97 21 0.30
98 32 0.46
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (97 bp):
GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTTGATGGCATATCCCA
GACAAGTCTTACACTAACTTTCATATGTCGAG
Found at i:67304816 original size:40 final size:40
Alignment explanation
Indices: 67304726--67304911 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
67304716 TTGAATGATG
* * *
67304726 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* * *
67304766 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
67304806 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
67304846 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
67304887 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67304912 AATGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 110 0.89
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:67304929 original size:80 final size:79
Alignment explanation
Indices: 67304727--67304944 Score: 185
Period size: 80 Copynumber: 2.7 Consensus size: 79
67304717 TGAATGATGT
** * * * * *
67304727 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATT
*
67304790 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* ** * *
67304807 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTG
67304872 TGCGA-ATTACT-ATAA
65 TGCGAGA-TACTAAT-A
* * * *
67304887 CCGGGCTATGTCCCGAAGGCATTTGAATGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
67304945 TACGTGATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
79 19 0.17
80 86 0.75
81 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:67312707 original size:40 final size:40
Alignment explanation
Indices: 67312626--67312808 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
67312616 AATGATGTCT
* * *
67312626 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCC
* * *
67312666 GGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAATCC
*
67312706 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCC
*
67312746 GGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AATCC
*
67312786 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
67312809 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 109 0.89
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCC
Found at i:67315160 original size:40 final size:40
Alignment explanation
Indices: 67315048--67315250 Score: 243
Period size: 40 Copynumber: 5.1 Consensus size: 40
67315038 CAGATGATAA
* * *
67315048 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
*
67315088 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
**
67315127 CCGGGCTAAGTCCCGAAGGCATTCGTGATAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * * *
67315167 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
67315207 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
67315247 CCGG
1 CCGG
67315251 TTGAATTCCG
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:67315214 original size:80 final size:79
Alignment explanation
Indices: 67315044--67315231 Score: 270
Period size: 80 Copynumber: 2.4 Consensus size: 79
67315034 TATTCAGATG
* * *
67315044 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGATAGTGACTAATTCCGAGCTAAGCCCGAAGGCAA
*
67315109 TTGTGCGAGTTATT
66 TTGTGCGAGTTACT
* *
67315123 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGATAGTTACT-ATATCCGAGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGATAGTGACTAAT-TCCGAGCTAAG-CCCGAAGGC
* *
67315187 ATTTGTGCGAGTTCCT
64 AATTGTGCGAGTTACT
*
67315203 ATAACCGGGCTATGTCCCGAAGGCATTCG
1 ATAACCGGGCTAAGTCCCGAAGGCATTCG
67315232 AGCGAGTAGC
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 2 0.02
79 46 0.47
80 49 0.51
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGTGATAGTGACTAATTCCGAGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:67329472 original size:29 final size:29
Alignment explanation
Indices: 67329406--67329530 Score: 182
Period size: 29 Copynumber: 4.3 Consensus size: 29
67329396 AAGTCTACAT
* * *
67329406 ACATGCATATGACCCATTAGG-CCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
67329434 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
67329463 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
67329492 ACATTCATGTGGCCCATTTA-GCCCAAATC
1 ACATTCATATGGCCCA-TTAGGCCCAAATC
67329521 ACATTCATAT
1 ACATTCATAT
67329531 ACATGCTTTC
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 18 0.20
29 67 0.76
30 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:67329609 original size:17 final size:18
Alignment explanation
Indices: 67329587--67329621 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67329577 TTGCCTATTA
67329587 TGGGCCCA-ATAGCCCAT
1 TGGGCCCACATAGCCCAT
*
67329604 TGGGCCCACTTAGCCCAT
1 TGGGCCCACATAGCCCAT
67329622 CCTGGCCCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.37, G:0.23, T:0.20
Consensus pattern (18 bp):
TGGGCCCACATAGCCCAT
Found at i:67330942 original size:25 final size:25
Alignment explanation
Indices: 67330914--67330983 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
67330904 CTCTTTTAAT
*
67330914 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
67330939 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
67330964 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
67330984 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:67331238 original size:27 final size:27
Alignment explanation
Indices: 67331188--67331337 Score: 122
Period size: 27 Copynumber: 5.6 Consensus size: 27
67331178 AGGGCAAAAT
* * * *
67331188 GGTAATTTTACCCGATAAGGGTATCTC
1 GGTAATTCTACCCTATAAGCGTATTTC
*
67331215 GGTAATTCTACCCTAT-AGACGTATTTT
1 GGTAATTCTACCCTATAAG-CGTATTTC
* * * *
67331242 AGTAATTCTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTATAAGCGTATTTC
* * *
67331269 GATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTATAAGCGTATTTC
* * * *
67331296 AGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTATAAGCGTATTTC
**
67331323 AATAATTCTACCCTA
1 GGTAATTCTACCCTA
67331338 CAGGGGTATT
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 96 0.96
28 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTATAAGCGTATTTC
Found at i:67331320 original size:81 final size:81
Alignment explanation
Indices: 67331190--67331356 Score: 217
Period size: 81 Copynumber: 2.1 Consensus size: 81
67331180 GGCAAAATGG
* * * * * *
67331190 TAATTTTACCCGATAAGGGTATCTCGGTAATTCTACCCTATAGACGTATTTTAGTAATTCTACTC
1 TAATTCTACCCGATAAGGGTATCTCAGTAATTCTACCCTAGAGACGTATTTCAATAATTCTACCC
*
67331255 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCAA
* * * **
67331271 TAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTAGAGGGGTATTTCAATAATTCTACCC
1 TAATTCTACCCGATAAGGGTATCTCAGTAATTCTACCCTAGAGACGTATTTCAATAATTCTACCC
*
67331336 TACAGGGGTATTTCAA
66 TACAAGGGTATTTCAA
67331352 TAATT
1 TAATT
67331357 TTGTAAATCG
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCGATAAGGGTATCTCAGTAATTCTACCCTAGAGACGTATTTCAATAATTCTACCC
TACAAGGGTATTTCAA
Found at i:67331342 original size:27 final size:27
Alignment explanation
Indices: 67331217--67331356 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 27
67331207 GGTATCTCGG
* ** * *
67331217 TAATTCTACCCTATAGACGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAA
* * *
67331244 TAATTCTACTCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCAA
* * * *
67331271 TAATTCTACCCTATAAGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAA
*
67331298 TAATTCTACCCTAGAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
67331325 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
67331352 TAATT
1 TAATT
67331357 TTGTAAATCG
Statistics
Matches: 95, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:67331356 original size:54 final size:54
Alignment explanation
Indices: 67331189--67331348 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 54
67331179 GGGCAAAATG
* * * * ** **
67331189 GTAATTTTACCCGATAAGGGTATCTCGGTAATTCTACCCTATAGACGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTTA
* * *
67331243 GTAATTCTACTCTACAAGGGTATTTCGATAATTCTACCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTTA
* * *
67331297 GTAATTCTACCCTAGAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTT
67331349 CAATAATTTT
Statistics
Matches: 91, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTTA
Found at i:67331371 original size:27 final size:26
Alignment explanation
Indices: 67331341--67331601 Score: 82
Period size: 27 Copynumber: 9.6 Consensus size: 26
67331331 TACCCTACAG
*
67331341 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * *
67331368 GGGTAAAATGGTAATTCTGTAAATC-A
1 GGGT-ATTTAGTAATTTTGTAAATCGA
* *
67331394 GGGGTACTTTGGTAATTTT-TACAAGTCGG
1 -GGGTA-TTTAGTAATTTTGTA-AA-TCGA
** *
67331423 GGGTATTTTAGTAATTTTACAAATTGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
* * *
67331450 GGGTATTTCAATAATTTTGCAAA-CTAA
1 GGGTATTT-AGTAATTTTGTAAATC-GA
* * ***
67331477 GGTTATTTCGGTAATTTCACAAATC-A
1 GGGTATTT-AGTAATTTTGTAAATCGA
* ** *
67331503 GGGGTATTCTGGTAATTTTACAAA-CTA
1 -GGGTATT-TAGTAATTTTGTAAATCGA
* * *
67331530 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTA-TTTAGTAATTTTGTAAATCGA
* * *
67331558 GGGTATTTTGGTAATTTTATAAGTCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
*
67331585 GGGTATTTTGGTAATTT
1 GGGTA-TTTAGTAATTT
67331602 CACAAATCAG
Statistics
Matches: 187, Mismatches: 32, Indels: 30
0.75 0.13 0.12
Matches are distributed among these distances:
26 9 0.05
27 149 0.80
28 28 0.15
29 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:67331490 original size:109 final size:108
Alignment explanation
Indices: 67331341--67331657 Score: 300
Period size: 108 Copynumber: 2.9 Consensus size: 108
67331331 TACCCTACAG
* * **
67331341 GGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATGGTAA-TTCTGTAAATCAGGGGTACTT-T
1 GGGTATTTCAATAATTTTGCAAATCGAAGGTAAAATGGTAATTTC-ACAAATCAGGGGTA-TTCT
* *
67331404 GGTAATTTTTAC-AAGTCGGGGGTATTTTAGTAATTTTACAAATTGA
64 GGTAA-TTTTACAAACT-AGGGGTATTTTAGTAATTTTACAAATTGA
* * **
67331450 GGGTATTTCAATAATTTTGCAAA-CTAAGGTTATTTCGGTAATTTCACAAATCAGGGGTATTCTG
1 GGGTATTTCAATAATTTTGCAAATCGAAGGTAAAAT-GGTAATTTCACAAATCAGGGGTATTCTG
* ** ***
67331514 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
65 GTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATTGA
*** ** * * *** *
67331558 GGGTATTTTGGTAATTTTATAAGTCGAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGG
1 GGGTATTTCAATAATTTTGCAAATCGAAGGTAAAATGGTAATTTCACAAATCAGGGGTATTCTGG
* *
67331623 TAATTTCACAAACTAGGGGTATTTTGGTAATTTTA
66 TAATTTTACAAACTAGGGGTATTTTAGTAATTTTA
67331658 TAAACCAAGG
Statistics
Matches: 174, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
108 115 0.66
109 56 0.32
110 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (108 bp):
GGGTATTTCAATAATTTTGCAAATCGAAGGTAAAATGGTAATTTCACAAATCAGGGGTATTCTGG
TAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATTGA
Found at i:67331592 original size:108 final size:108
Alignment explanation
Indices: 67331480--67331684 Score: 374
Period size: 108 Copynumber: 1.9 Consensus size: 108
67331470 AAACTAAGGT
*
67331480 TATTTCGGTAATTTCACAAATCAGGGGTATTCTGGTAATTTTACAAACTAGGGGTATTTTGGTAA
1 TATTTCGGTAATTTCACAAATCAGGGGTATTCTGGTAATTTCACAAACTAGGGGTATTTTGGTAA
*
67331545 TTTTGTAAACCAAGGGTATTTTGGTAATTTTATAAGTCGAGGG
66 TTTTATAAACCAAGGGTATTTTGGTAATTTTATAAGTCGAGGG
* *
67331588 TATTTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAA
1 TATTTCGGTAATTTCACAAATCAGGGGTATTCTGGTAATTTCACAAACTAGGGGTATTTTGGTAA
67331653 TTTTATAAACCAAGGGTATTTTGGTAATTTTA
66 TTTTATAAACCAAGGGTATTTTGGTAATTTTA
67331685 CAAACCAGGG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 93 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (108 bp):
TATTTCGGTAATTTCACAAATCAGGGGTATTCTGGTAATTTCACAAACTAGGGGTATTTTGGTAA
TTTTATAAACCAAGGGTATTTTGGTAATTTTATAAGTCGAGGG
Found at i:67331615 original size:27 final size:27
Alignment explanation
Indices: 67331388--67331716 Score: 326
Period size: 27 Copynumber: 12.1 Consensus size: 27
67331378 GTAATTCTGT
*
67331388 AAATCAGGGGTACTTTGGTAATTTTTAC
1 AAATCAGGGGTATTTTGGTAA-TTTTAC
* * *
67331416 AAGTCGGGGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *** *
67331443 AAAT-TGAGGGTATTTCAATAATTTTGC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * * *
67331470 AAA-CTAAGGTTATTTCGGTAATTTCAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
67331497 AAATCAGGGGTATTCTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
**
67331524 AAA-CTAGGGGTATTTTGGTAATTTTGT
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * *
67331551 AAACCAAGGGTATTTTGGTAATTTTAT
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *
67331578 AAGTC-GAGGGTATTTTGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
*
67331605 AAATCAGGGGTATTTTGGTAATTTCAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
67331632 AAA-CTAGGGGTATTTTGGTAATTTTAT
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
67331659 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *
67331686 AAACCAGGGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
67331713 AAAT
1 AAAT
67331717 TGAGGACATT
Statistics
Matches: 252, Mismatches: 39, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.01
27 228 0.90
28 21 0.08
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:67334029 original size:40 final size:40
Alignment explanation
Indices: 67333974--67334150 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
67333964 CGGATGATAA
* *
67333974 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
67334014 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67334054 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67334094 CCGGGCTAAGTCCCGAAGGCATTGGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67334134 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
67334151 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67334418 original size:22 final size:21
Alignment explanation
Indices: 67334377--67334420 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
67334367 GAATGTGCAT
67334377 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
67334399 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
67334421 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:67337797 original size:140 final size:138
Alignment explanation
Indices: 67337310--67337875 Score: 841
Period size: 138 Copynumber: 4.1 Consensus size: 138
67337300 AGAATATAGG
*
67337310 ATTATATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA-TCGAAATTA
1 ATTA-ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACT-GAAATTA
* * *
67337374 ATTAATATAATTATTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTTTATGAATC
64 ATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATC
67337439 AAATTCATAT
129 AAATTCATAT
* * * * ***
67337449 ATTAAATATGTTCTTTCCAAAATAATATTAATTTCCATGCCAAATATATTTTGACTGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAAT
67337514 TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
66 TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
67337579 ATTCATAT
131 ATTCATAT
* * *
67337587 ATTAATTATATTCTTTCCAAAATAATATTGATTTCCATGTCCTTTATATTTTGACTGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAAT
* * **
67337652 TAATATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAA
66 TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
67337717 ATTCATATAT
131 ATTC--ATAT
* *
67337727 ATTAATTATATTCGTTCCAAAAGAATATTACTTTCCATG-CATTTTATATTTTGAAC-GAAATTA
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTTATATTTTG-ACTGAAATTA
* * *
67337790 GTTAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATAAATC
64 ATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATC
67337855 AAATTCATAT
129 AAATTCATAT
*
67337865 ATTAAATATAT
1 ATTAATTATAT
67337876 CTATGTTCGC
Statistics
Matches: 389, Mismatches: 33, Indels: 11
0.90 0.08 0.03
Matches are distributed among these distances:
138 258 0.66
139 6 0.02
140 123 0.32
141 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (138 bp):
ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAAT
TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
ATTCATAT
Found at i:67337857 original size:278 final size:276
Alignment explanation
Indices: 67337310--67337875 Score: 895
Period size: 278 Copynumber: 2.0 Consensus size: 276
67337300 AGAATATAGG
* *
67337310 ATTATATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGATCGAAATTAA
1 ATTA-ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCCTTTATATTTTGATCGAAATTAA
*
67337375 TTAATATAATTATTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTTTATGAATCA
65 TTAATATAATTATTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCA
* * *
67337440 AATTCATATATTAAATATGTTCTTTCCAAAATAATATTAATTTCCATGCCAAATATATTTTGACT
130 AATTCATATATTAAATATATTCGTTCCAAAAGAATATTAATTTCCATGCCAAATATATTTTGACT
67337505 GAAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGT
195 GAAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGT
*
67337570 ATGAATCAAATTCATAT
260 ATAAATCAAATTCATAT
* *
67337587 ATTAATTATATTCTTTCCAAAATAATATTGATTTCCATGTCCTTTATATTTTGA-CTGAAATTAA
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCCTTTATATTTTGATC-GAAATTAA
* *
67337651 TTAATATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCA
65 TTAATATAATTATTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCA
* * **
67337716 AATTCATATATATTAATTATATTCGTTCCAAAAGAATATTACTTTCCATG-CATTTTATATTTTG
130 AATTC--ATATATTAAATATATTCGTTCCAAAAGAATATTAATTTCCATGCCA-AATATATTTTG
* *
67337780 AAC-GAAATTAGTTAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATT
192 -ACTGAAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATT
67337844 TTGTATAAATCAAATTCATAT
256 TTGTATAAATCAAATTCATAT
*
67337865 ATTAAATATAT
1 ATTAATTATAT
67337876 CTATGTTCGC
Statistics
Matches: 266, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
275 1 0.00
276 121 0.45
277 6 0.02
278 136 0.51
279 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (276 bp):
ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCCTTTATATTTTGATCGAAATTAAT
TAATATAATTATTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAA
ATTCATATATTAAATATATTCGTTCCAAAAGAATATTAATTTCCATGCCAAATATATTTTGACTG
AAATTAATTAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTA
TAAATCAAATTCATAT
Found at i:67341375 original size:19 final size:19
Alignment explanation
Indices: 67341341--67341377 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67341331 TCAATCAAAC
* *
67341341 TTACACAAACATGCAAAAT
1 TTACACAAAAAGGCAAAAT
67341360 TTACACAAAAAGGCAAAA
1 TTACACAAAAAGGCAAAA
67341378 ACGTTACACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.19, G:0.08, T:0.16
Consensus pattern (19 bp):
TTACACAAAAAGGCAAAAT
Found at i:67342119 original size:35 final size:33
Alignment explanation
Indices: 67342076--67342141 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 33
67342066 AGATTCTTTT
67342076 TCTTTTTC-TCATTCTCTTTTTTCTCTCTTTCACAC
1 TCTTTTTCTTCATTC-CTTTTTT-T-TCTTTCACAC
67342111 TCTTTTTCTTTCATTCCTTTTTTTTCTTTCA
1 TCTTTTTC-TTCATTCCTTTTTTTTCTTTCA
67342142 AATTCTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
34 7 0.24
35 9 0.31
36 7 0.24
37 6 0.21
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (33 bp):
TCTTTTTCTTCATTCCTTTTTTTTCTTTCACAC
Found at i:67342149 original size:34 final size:35
Alignment explanation
Indices: 67342075--67342149 Score: 93
Period size: 34 Copynumber: 2.2 Consensus size: 35
67342065 CAGATTCTTT
*
67342075 TTCTTTTTCTCATTCTCTTTTTTCTCTCTTTCACA
1 TTCTTTTTCTCATTCTCTTTTTTCTCTCTTTCAAA
*
67342110 CTCTTTTTCTTTCATTC-CTTTTTT-T-TCTTTCAAA
1 TTCTTTTTC--TCATTCTCTTTTTTCTCTCTTTCAAA
67342144 TTCTTT
1 TTCTTT
67342150 CTCACATGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 13 0.37
35 9 0.26
36 7 0.20
37 6 0.17
ACGTcount: A:0.09, C:0.25, G:0.00, T:0.65
Consensus pattern (35 bp):
TTCTTTTTCTCATTCTCTTTTTTCTCTCTTTCAAA
Found at i:67353046 original size:77 final size:75
Alignment explanation
Indices: 67352885--67353049 Score: 181
Period size: 77 Copynumber: 2.2 Consensus size: 75
67352875 TTAAATATGA
* * * *
67352885 AAAACACATAATACAAGTCTTAAAAGATGCTAATTTATTAATGCAAAGCATTAACTAAAGACACA
1 AAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACA
* *
67352950 TTCAATAAAT
66 TTCAACAAAC
* *
67352960 AAGAA-ACATAATGCACATTTTTAAAAAGATG-TAGATGTATTAATGCAAAACATTAAATAAAGA
1 AA-AACACATAATGCA-AGTCTT-AAAAGATGCTA-ATGTATTAATGCAAAACATTAAATAAAGA
** *
67353023 TGCATTTAACAAAC
62 CACATTCAACAAAC
67353037 AAAACACATAATG
1 AAAACACATAATG
67353050 AAGCAGATCA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
75 11 0.15
76 10 0.14
77 53 0.72
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.26
Consensus pattern (75 bp):
AAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACA
TTCAACAAAC
Found at i:67357029 original size:17 final size:17
Alignment explanation
Indices: 67357004--67357037 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67356994 ATAAATTTTC
*
67357004 CCAAAACCAAGTCATTT
1 CCAAAACCAAATCATTT
*
67357021 CCAACACCAAATCATTT
1 CCAAAACCAAATCATTT
67357038 ATCAACCTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.32, G:0.03, T:0.24
Consensus pattern (17 bp):
CCAAAACCAAATCATTT
Found at i:67359932 original size:27 final size:27
Alignment explanation
Indices: 67359918--67359992 Score: 132
Period size: 27 Copynumber: 2.8 Consensus size: 27
67359908 TCCTAACACG
*
67359918 TAAGGGCAAAATAGTCATTTTACCACT
1 TAAGGGCAAAATAGTCATTTTACCACA
*
67359945 TAAGGGCAAAACAGTCATTTTACCACA
1 TAAGGGCAAAATAGTCATTTTACCACA
67359972 TAAGGGCAAAATAGTCATTTT
1 TAAGGGCAAAATAGTCATTTT
67359993 GTCAATTTAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (27 bp):
TAAGGGCAAAATAGTCATTTTACCACA
Found at i:67362678 original size:40 final size:40
Alignment explanation
Indices: 67362633--67362784 Score: 200
Period size: 40 Copynumber: 3.8 Consensus size: 40
67362623 ATAACCACAA
* *
67362633 GCACAATTGCCTTCGGGTCTTAACCC-GAGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TATAGCAACTC
*
67362673 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
67362713 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
67362753 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67362785 CATTCAAATG
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 95 0.93
41 6 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:67367693 original size:12 final size:12
Alignment explanation
Indices: 67367676--67367701 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67367666 CTGAAGCATT
67367676 TCTTTTCTCTTC
1 TCTTTTCTCTTC
67367688 TCTTTTCTCTTC
1 TCTTTTCTCTTC
67367700 TC
1 TC
67367702 CATAATTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (12 bp):
TCTTTTCTCTTC
Found at i:67369038 original size:27 final size:27
Alignment explanation
Indices: 67369007--67369064 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
67368997 CCCCAAAATA
*
67369007 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTATAG
67369034 GGTAAAATGACTGTAATACCCCTATAG
1 GGTAAAATGACTGTAATACCCCTATAG
67369061 GGTA
1 GGTA
67369065 CCCCTGTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTATAG
Found at i:67369067 original size:40 final size:40
Alignment explanation
Indices: 67369023--67369104 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
67369013 ATGACTGTAA
* **
67369023 TACCCCTGTAGGGTAAAATGACTGTAATACCCCTATAGGG
1 TACCCCTGTAAGGTAAAATGACCATAATACCCCTATAGGG
* **
67369063 TACCCCTGTAAGGTAAATTGACCATAATGTCCCTATAGGG
1 TACCCCTGTAAGGTAAAATGACCATAATACCCCTATAGGG
67369103 TA
1 TA
67369105 AAGTGACCGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (40 bp):
TACCCCTGTAAGGTAAAATGACCATAATACCCCTATAGGG
Found at i:67369104 original size:27 final size:27
Alignment explanation
Indices: 67369065--67369496 Score: 459
Period size: 27 Copynumber: 15.7 Consensus size: 27
67369055 CTATAGGGTA
* * *
67369065 CCCCTGTAAGGTAAATTGACCATAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
67369092 TCCCTATAGGGTAAAGTGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
67369119 CCCCTGTAGGGTAAAATGACTGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
67369146 CCCTTATAGGGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
67369173 CCCCTGTAAGGTAAAATGACCGTAATACCCG
1 CCCCTGTAGGGTAAAATGACCGTAAT----G
* *
67369204 TAATACCCCTGTAGGGTAAAATGACCATAATA
1 -----CCCCTGTAGGGTAAAATGACCGTAATG
* *
67369236 CCCGTGTAGGGTAAAATGACCGTACTG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
67369263 CCCCTGTAGGGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
67369290 CCCCTATAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
** *
67369317 CTTCTGTAGGGTAAAATGATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
67369344 TCCCTGTAGGGTAAAATGACCGTAACG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
67369371 CCCCTGTAAGGTAAAATGATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
67369398 CCCCTATAGGGTAAAATGATCGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * **
67369425 CCCCTGTATGGTAAAATAACTATAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
67369452 CCCCTATAGGGTAAAATGACCGTAGTA
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
67369479 CCCCTGTATGGTAAAATG
1 CCCCTGTAGGGTAAAATG
67369497 GCGATTGTGC
Statistics
Matches: 335, Mismatches: 61, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
27 311 0.93
36 24 0.07
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAATGACCGTAATG
Found at i:67369206 original size:36 final size:36
Alignment explanation
Indices: 67369165--67369240 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
67369155 GGTAAAATGA
*
67369165 CCGTAATACCCCTGTAAGGTAAAATGACCGTAATAC
1 CCGTAATACCCCTGTAAGGTAAAATGACCATAATAC
*
67369201 CCGTAATACCCCTGTAGGGTAAAATGACCATAATAC
1 CCGTAATACCCCTGTAAGGTAAAATGACCATAATAC
67369237 CCGT
1 CCGT
67369241 GTAGGGTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (36 bp):
CCGTAATACCCCTGTAAGGTAAAATGACCATAATAC
Found at i:67369669 original size:27 final size:27
Alignment explanation
Indices: 67369639--67369693 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
67369629 GGAAGTACTG
*
67369639 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGACTATGCCACATTCACTAT
* * *
67369666 TACTGGTGGCTTTGCCACATTTACTAT
1 TACTGGTGACTATGCCACATTCACTAT
67369693 T
1 T
67369694 TTGACAGCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (27 bp):
TACTGGTGACTATGCCACATTCACTAT
Found at i:67369891 original size:33 final size:33
Alignment explanation
Indices: 67369843--67369908 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
67369833 ATTACACTAC
* *
67369843 ACTGTTACTGCATAGGGCT-AAGGCCCAGACTGT
1 ACTGATACTGAATAGGGCTCAA-GCCCAGACTGT
67369876 ACTGATACTGAATAGGGCTCAAGCCCAGACTGT
1 ACTGATACTGAATAGGGCTCAAGCCCAGACTGT
67369909 TACTACATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTCAAGCCCAGACTGT
Found at i:67379041 original size:15 final size:16
Alignment explanation
Indices: 67379005--67379034 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67378995 ACATATCATT
67379005 TATTTCATTATACCAA
1 TATTTCATTATACCAA
67379021 TATTTCA-TATACCA
1 TATTTCATTATACCA
67379035 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTCATTATACCAA
Found at i:67387060 original size:43 final size:42
Alignment explanation
Indices: 67386999--67387159 Score: 155
Period size: 43 Copynumber: 3.8 Consensus size: 42
67386989 AATGCCAACG
* * *
67386999 TCCCAGACATGGTCTTACATGTAATCAAATATCGATGTC-ACTA
1 TCCCAGACATGGTCTTACACGAAATCAAATAT-GATGCCGA-TA
* *
67387042 TCCCAGACAGGGTCTTACACGAAATCAAATATGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAAATATGATGCCGATA
** * *
67387084 TCCCAGACATGGTCTTACACGTTATTCTCAAAT-TGATGCCAATG
1 TCCCAGACATGGTCTTACACG--A-AATCAAATATGATGCCGATA
* * *
67387128 TCCTAGACATGGTCTTACATGAAATCACATAT
1 TCCCAGACATGGTCTTACACGAAATCAAATAT
67387160 CGGAATCCTA
Statistics
Matches: 99, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 5 0.05
42 28 0.28
43 30 0.30
44 30 0.30
45 6 0.06
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATCAAATATGATGCCGATA
Found at i:67387173 original size:44 final size:42
Alignment explanation
Indices: 67386998--67387159 Score: 159
Period size: 44 Copynumber: 3.8 Consensus size: 42
67386988 TAATGCCAAC
* *
67386998 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGTCACTA-
1 GTCCCAGACATGGTCTTACACGAAATCAAATAT-GATG-C-CTAT
* *
67387042 -TCCCAGACAGGGTCTTACACGAAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATGATGCCTAT
** *
67387083 GTCCCAGACATGGTCTTACACGTTATTCTCAAAT-TGATGCCAAT
1 GTCCCAGACATGGTCTTACACG--A-AATCAAATATGATGCCTAT
* * *
67387127 GTCCTAGACATGGTCTTACATGAAATCACATAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATAT
67387160 CGGAATCCTA
Statistics
Matches: 99, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
40 2 0.02
41 6 0.06
42 26 0.26
43 29 0.29
44 30 0.30
45 6 0.06
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATGATGCCTAT
Found at i:67409293 original size:34 final size:33
Alignment explanation
Indices: 67409248--67409317 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
67409238 TTCATTTCTA
*
67409248 ATACTGTTACTG-AGTTGGGCTAAGGCCCACACTG
1 ATACTGATACTGTA-TTGGGCTAAGGCCCACA-TG
*
67409282 ATACTGATACTGTATTGGGTTAAGGCCCACATG
1 ATACTGATACTGTATTGGGCTAAGGCCCACATG
67409315 ATA
1 ATA
67409318 TTGCGACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 5 0.15
34 27 0.82
35 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (33 bp):
ATACTGATACTGTATTGGGCTAAGGCCCACATG
Found at i:67411317 original size:25 final size:25
Alignment explanation
Indices: 67411283--67411332 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
67411273 TTAGAGGATG
67411283 TTTTTTACTTGAGCACTCATATATA
1 TTTTTTACTTGAGCACTCATATATA
67411308 TTTTTTACTTGAGCACTCATATATA
1 TTTTTTACTTGAGCACTCATATATA
67411333 CCTAACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (25 bp):
TTTTTTACTTGAGCACTCATATATA
Found at i:67415612 original size:23 final size:23
Alignment explanation
Indices: 67415582--67415663 Score: 85
Period size: 26 Copynumber: 3.3 Consensus size: 23
67415572 ATACGTATTA
67415582 TATATTTTTTATAATTAT-TTACT
1 TATATTTTTTAT-ATTATATTACT
67415605 TATATTTTATTATATTATATTACT
1 TATATTTT-TTATATTATATTACT
* *
67415629 TCATATTTTTCTATTATCATATTAAT
1 T-ATATTTTT-TA-TATTATATTACT
67415655 ATATATTTT
1 -TATATTTT
67415664 AACACATATC
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
23 13 0.25
24 11 0.22
25 9 0.18
26 17 0.33
27 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (23 bp):
TATATTTTTTATATTATATTACT
Found at i:67415625 original size:25 final size:22
Alignment explanation
Indices: 67415582--67415638 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 22
67415572 ATACGTATTA
67415582 TATATTTTTTATAATTATTTACT
1 TATATTTTTTATAATTA-TTACT
*
67415605 TATATTTTATTATATTATATTACT
1 TATATTTT-TTATAAT-TATTACT
67415629 TCATATTTTT
1 T-ATATTTTT
67415639 CTATTATCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 8 0.27
24 13 0.43
25 9 0.30
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (22 bp):
TATATTTTTTATAATTATTACT
Found at i:67415704 original size:40 final size:37
Alignment explanation
Indices: 67415660--67415734 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 37
67415650 TTAATATATA
67415660 TTTTAACACATATCATTACTTAT-TATTTATTATATTATGT
1 TTTTAACACATA--A-TACTTATATATTTA-TATATTATGT
* *
67415700 TTTTATCACATAATATTTATATATTTATATATTAT
1 TTTTAACACATAATACTTATATATTTATATATTAT
67415735 TATATTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 14 0.44
38 7 0.22
40 11 0.34
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (37 bp):
TTTTAACACATAATACTTATATATTTATATATTATGT
Found at i:67415983 original size:21 final size:22
Alignment explanation
Indices: 67415949--67415992 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
67415939 TATTTCAAAA
*
67415949 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
67415970 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
67415992 T
1 T
67415993 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:67426963 original size:7 final size:7
Alignment explanation
Indices: 67426953--67427064 Score: 50
Period size: 7 Copynumber: 14.9 Consensus size: 7
67426943 TTTGAAAATC
67426953 AAAAAAG
1 AAAAAAG
*
67426960 AAAAAAA
1 AAAAAAG
67426967 AACAAACAG
1 AA-AAA-AG
*
67426976 AAAATAAA
1 AAAA-AAG
*
67426984 AAAATAAC
1 AAAA-AAG
*
67426992 AAAAAAC
1 AAAAAAG
67426999 AAAAACA-
1 AAAAA-AG
67427006 AAACAAA-
1 AAA-AAAG
67427013 AAATAAA-
1 AAA-AAAG
*
67427020 AAAAAGG
1 AAAAAAG
67427027 AAAAAAG
1 AAAAAAG
67427034 AAAAAAG
1 AAAAAAG
*
67427041 AGAGAAGAGG
1 A-A-AA-AAG
67427051 AAAAAAG
1 AAAAAAG
67427058 AGAAAAA
1 A-AAAAA
67427065 TGGAGAGGCC
Statistics
Matches: 86, Mismatches: 9, Indels: 19
0.75 0.08 0.17
Matches are distributed among these distances:
6 2 0.02
7 46 0.53
8 28 0.33
9 7 0.08
10 3 0.03
ACGTcount: A:0.80, C:0.05, G:0.12, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:67426980 original size:29 final size:29
Alignment explanation
Indices: 67426946--67427037 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
67426936 TTGAGGTTTT
* *
67426946 GAAAATCAAAAAAGAAAAAAAAACAAACA
1 GAAAATCAAAAAATAAAAAAAAACAAAAA
* *
67426975 GAAAATAAAAAAATAACAAAAAACAAAAA
1 GAAAATCAAAAAATAAAAAAAAACAAAAA
*
67427004 CAAAA-CAAAAAATAAAAAAAAGGA-AAAAA
1 GAAAATCAAAAAATAAAAAAAA--ACAAAAA
67427033 GAAAA
1 GAAAA
67427038 AAGAGAGAAG
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.26
29 38 0.72
30 1 0.02
ACGTcount: A:0.82, C:0.08, G:0.07, T:0.04
Consensus pattern (29 bp):
GAAAATCAAAAAATAAAAAAAAACAAAAA
Found at i:67426984 original size:18 final size:17
Alignment explanation
Indices: 67426963--67427022 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
67426953 AAAAAAGAAA
67426963 AAAAAACAAACAGAAAAT
1 AAAAAACAAACA-AAAAT
67426981 AAAAAA-ATAACAAAAA-
1 AAAAAACA-AACAAAAAT
67426997 ACAAAAACAAAACAAAAAAT
1 A-AAAAAC-AAAC-AAAAAT
67427017 AAAAAA
1 AAAAAA
67427023 AAGGAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
16 1 0.03
17 10 0.28
18 13 0.36
19 11 0.31
20 1 0.03
ACGTcount: A:0.83, C:0.10, G:0.02, T:0.05
Consensus pattern (17 bp):
AAAAAACAAACAAAAAT
Found at i:67427039 original size:36 final size:38
Alignment explanation
Indices: 67426952--67427039 Score: 101
Period size: 36 Copynumber: 2.4 Consensus size: 38
67426942 TTTTGAAAAT
*
67426952 CAAAAAAGAAAAAAAAACAAACAGAAAATAAAAAAATAA
1 CAAAAAAG-AAAAAAAACAAACAAAAAATAAAAAAATAA
* * *
67426991 CAAAAAA-CAAAAACA-AAACAAAAAATAAAAAAA-AG
1 CAAAAAAGAAAAAAAACAAACAAAAAATAAAAAAATAA
*
67427026 GAAAAAAGAAAAAA
1 CAAAAAAGAAAAAA
67427040 GAGAGAAGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
35 7 0.17
36 22 0.52
37 6 0.14
39 7 0.17
ACGTcount: A:0.83, C:0.08, G:0.06, T:0.03
Consensus pattern (38 bp):
CAAAAAAGAAAAAAAACAAACAAAAAATAAAAAAATAA
Found at i:67429115 original size:37 final size:37
Alignment explanation
Indices: 67429065--67429143 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67429055 TTATTACGAA
* *
67429065 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
67429102 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
67429139 GTCTT
1 GTCTT
67429144 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:67429340 original size:47 final size:47
Alignment explanation
Indices: 67429262--67429752 Score: 811
Period size: 47 Copynumber: 10.4 Consensus size: 47
67429252 CCCTTCGGGA
* * * * * * *
67429262 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67429309 CCTGTCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67429356 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67429403 CTTATTACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67429450 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67429497 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67429544 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67429593 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67429640 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67429687 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67429734 CTTATCACATATATACACT
1 CTTATCACATATATACACT
67429753 GTCTTGGCTG
Statistics
Matches: 416, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 370 0.89
49 46 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67429613 original size:190 final size:190
Alignment explanation
Indices: 67429262--67429748 Score: 825
Period size: 190 Copynumber: 2.6 Consensus size: 190
67429252 CCCTTCGGGA
* * * * * * * * * * * *
67429262 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATACACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
*
67429327 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTTACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
67429390 TCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
67429450 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
67429515 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
67429580 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
67429640 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
67429705 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
67429749 CACTGTCTTG
Statistics
Matches: 282, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
188 90 0.32
190 192 0.68
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
Found at i:67432641 original size:206 final size:206
Alignment explanation
Indices: 67432268--67432807 Score: 841
Period size: 206 Copynumber: 2.6 Consensus size: 206
67432258 GTAAGATCTG
*
67432268 AGATGGTTTGGCATCATTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG
1 AGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG
* * * * *
67432333 TGCTTACGATGAAGCAAATCTAAGATGATTTGGCATATTTGTATTGTCAGAAAACAAATCAAAGT
66 TGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGT
* ** * * *
67432398 TTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTTAGATGTTTATACTG
131 TTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGCTTAGACTG
67432463 AAGCAGATCCA
196 AAGCAGATCCA
* * *
67432474 AGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCTGATTTAGCTTTCAC
1 AGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCTGATTTGGCTTTCAC
*
67432538 GTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
65 GTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67432603 TTTGGCGTCTCCATATTCGATGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGCTTAGCCT
130 TTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGCTTAGACT
67432668 GAAGCAGATCCA
195 GAAGCAGATCCA
* * * *
67432680 AGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGA-ATAGCTGATTTGGTTTTCGCG
1 AGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG
*
67432744 TCCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
66 TGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
67432808 AAGAAAATTT
Statistics
Matches: 304, Mismatches: 28, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
205 81 0.27
206 222 0.73
207 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
AGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG
TGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGT
TTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGCTTAGACTG
AAGCAGATCCA
Found at i:67434602 original size:23 final size:23
Alignment explanation
Indices: 67434542--67434595 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 23
67434532 GTATTATATA
67434542 TATATTTTA-TA-ATTATTTACT
1 TATATTTTATTATATTATTTACT
67434563 TATATTTTATTATATTATATTACT
1 TATATTTTATTATATTAT-TTACT
67434587 TCATATTTT
1 T-ATATTTT
67434596 TCTATTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.31
22 2 0.07
23 5 0.17
24 6 0.21
25 7 0.24
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (23 bp):
TATATTTTATTATATTATTTACT
Found at i:67434940 original size:21 final size:22
Alignment explanation
Indices: 67434906--67434949 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
67434896 TATTTCAAAA
*
67434906 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
67434927 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
67434949 T
1 T
67434950 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:67440183 original size:24 final size:26
Alignment explanation
Indices: 67440145--67440198 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
67440135 AAAAATTTAT
67440145 AAATAAAATTGTTAAAT-TATAAATTA
1 AAATAAAATTGTTAAATGT-TAAATTA
*
67440171 AAAT-AAATT-TTAAATGTTAGATTA
1 AAATAAAATTGTTAAATGTTAAATTA
67440195 AAAT
1 AAAT
67440199 CCTCAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 16 0.62
25 6 0.23
26 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (26 bp):
AAATAAAATTGTTAAATGTTAAATTA
Found at i:67441189 original size:99 final size:96
Alignment explanation
Indices: 67441080--67441255 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
67441070 GTATAGAGGT
*
67441080 GTCAGTGTAAGACCATGTCTGGGACATAGCATCGGAACGAAT-ATGTGA-GAGCTAGTGTAACAC
1 GTCAGTGTAAGACCATGTCTAGGACATAGCAT-GG-AC--ATGATG-GATGAGCTAGTGTAACAC
67441143 CATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
61 CATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
* * * *
67441179 GTCAGTGTAAGACCATGTCTAGGACATGGCATTGACTTGATGGATGAGCTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTAGGACATAGCATGGACATGATGGATGAGCTAGTGTAACACCATGT
67441244 CTGGGACATGGC
66 CTGGGACATGGC
67441256 ATCGACATTA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
95 3 0.04
96 34 0.49
97 2 0.03
98 1 0.01
99 30 0.43
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTAGGACATAGCATGGACATGATGGATGAGCTAGTGTAACACCATGT
CTGGGACATGGCGTCGGCCTCGATTTCGATA
Found at i:67441251 original size:47 final size:48
Alignment explanation
Indices: 67440990--67441259 Score: 181
Period size: 47 Copynumber: 5.7 Consensus size: 48
67440980 TTATGAGAGT
* *
67440990 TAGTGTAAGACCATGTATGGGACATGGCATTGG-CATTGA-GACGA-GAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-TTGATG--GATGAGC
* * * * * *
67441038 CAGTGTAAGA-CATGTTTGGGAC-T--CATCGGCACGT-ATAGAGGTG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACTTGATGGATGAGC
* *
67441081 TCAGTGTAAGACCATGTCTGGGACATAGCATCGGAACGAAT-ATGTGA-GAGC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGG-AC--TTGATG-GATGAGC
* * * * *
67441132 TAGTGTAACACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-AG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA--TGGATGAGC
* *
67441180 TCAGTGTAAGACCATGTCTAGGACATGGCAT-TGACTTGATGGATGAGC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATGGATGAGC
67441228 TAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCG
67441260 ACATTATACT
Statistics
Matches: 173, Mismatches: 28, Indels: 42
0.71 0.12 0.17
Matches are distributed among these distances:
43 2 0.01
44 17 0.10
45 12 0.07
46 7 0.04
47 41 0.24
48 25 0.14
49 31 0.18
50 35 0.20
51 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATGGATGAGC
Found at i:67445458 original size:16 final size:17
Alignment explanation
Indices: 67445427--67445460 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
67445417 CAATTCAGTC
*
67445427 CAAAATTCATACTTTTG
1 CAAAATTCACACTTTTG
67445444 CAAAATT-ACACTTTTG
1 CAAAATTCACACTTTTG
67445460 C
1 C
67445461 CCCTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (17 bp):
CAAAATTCACACTTTTG
Found at i:67465181 original size:37 final size:37
Alignment explanation
Indices: 67465131--67465209 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67465121 TTATTACGAA
* *
67465131 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
67465168 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
67465205 GTCTT
1 GTCTT
67465210 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:67465432 original size:49 final size:47
Alignment explanation
Indices: 67465310--67465529 Score: 379
Period size: 47 Copynumber: 4.6 Consensus size: 47
67465300 ATAGTACTGA
*
67465310 CACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
67465357 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
67465404 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
67465453 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
67465500 CACATATATGCA-TGTTCACATCCATCACAT
1 CACATATATACACT-TTCACATTCATCACAT
67465530 AGAATCCTAA
Statistics
Matches: 167, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.01
47 119 0.71
49 47 0.28
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:67465480 original size:96 final size:96
Alignment explanation
Indices: 67465316--67465508 Score: 386
Period size: 96 Copynumber: 2.0 Consensus size: 96
67465306 CTGACACATT
67465316 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
67465381 TCACATCGGCCATTAGGCCTTATCACATATA
66 TCACATCGGCCATTAGGCCTTATCACATATA
67465412 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
67465477 TCACATCGGCCATTAGGCCTTATCACATATA
66 TCACATCGGCCATTAGGCCTTATCACATATA
67465508 T
1 T
67465509 GCATGTTCAC
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATA
Found at i:67473834 original size:27 final size:27
Alignment explanation
Indices: 67473804--67473944 Score: 90
Period size: 27 Copynumber: 5.2 Consensus size: 27
67473794 CGACTTGTAA
67473804 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
67473831 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
****
67473858 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCAAAGTACCCTCGA-TTTACAG
* ***
67473885 AATTACTATTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
****
67473912 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCAAAGTACCCTCGA-TTTACAG
67473939 AATTAC
1 AATTAC
67473945 TGTTTTAACC
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.04
27 97 0.95
28 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:67473949 original size:27 final size:27
Alignment explanation
Indices: 67473821--67474007 Score: 261
Period size: 27 Copynumber: 6.9 Consensus size: 27
67473811 AAAGTACTCC
67473821 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
67473848 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67473875 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
67473902 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67473929 C-AGTTTACAGAATTACTGTTTTAACCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
67473956 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
67473983 CGATTTGTAAAATTACCATTTTACC
1 CGATTTACAGAATTACCGTTTTACC
67474008 TGTGACAGCC
Statistics
Matches: 144, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.01
27 140 0.97
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Done.