Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 200 of 373
Found at i:67475699 original size:27 final size:27
Alignment explanation
Indices: 67475669--67475820 Score: 144
Period size: 27 Copynumber: 5.6 Consensus size: 27
67475659 AAATTGTACA
* *
67475669 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
67475696 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * **
67475723 GCACTAAGTGTGCGAATTGACCATACG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
67475750 GCACTAAGAGTGTGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
67475778 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
67475805 GCACTAAGTGTGCGAT
1 GCACTAAGTGTGCGAT
67475821 GATTATATAG
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
27 79 0.80
28 20 0.20
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:67475782 original size:82 final size:81
Alignment explanation
Indices: 67475669--67475819 Score: 205
Period size: 82 Copynumber: 1.9 Consensus size: 81
67475659 AAATTGTACA
* * * *
67475669 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
67475733 TGCGAATTGACCATACG
65 TGCGAATTGACCATACG
* ** *
67475750 GCACTAAGAGTGTGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
67475815 TGCGA
65 TGCGA
67475820 TGATTATATA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 14 0.23
82 46 0.77
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATACG
Found at i:67475808 original size:55 final size:53
Alignment explanation
Indices: 67475668--67475843 Score: 137
Period size: 55 Copynumber: 3.3 Consensus size: 53
67475658 TAAATTGTAC
* * * * *
67475668 AGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGATTTGAATACGTGGCACTAAGAGTGCGAAATGAATATG
* * ** *
67475721 ATGCACTAAGTGTGCGAATTGACCATAC--GGCACTAAGAGTGTGAGTCTGACTATG
1 A-GCACTAAGTGTGCGATTTGA--ATACGTGGCACTAAGAGTGCGA-AATGAATATG
* *
67475776 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCG--ATGATTATAT-
1 -AGCACTAAGTGTGCGATTTGAATACGTGGCACTAAGAGTGCGAAATGA--ATATG
*
67475829 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67475844 GGCTCAACAT
Statistics
Matches: 97, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
52 17 0.18
53 4 0.04
54 34 0.35
55 39 0.40
56 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGAATACGTGGCACTAAGAGTGCGAAATGAATATG
Found at i:67479088 original size:27 final size:27
Alignment explanation
Indices: 67479058--67479206 Score: 140
Period size: 27 Copynumber: 5.5 Consensus size: 27
67479048 AAATTGTACA
* *
67479058 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
67479085 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* **
67479112 GCACTAAGTGTGCGAATTT-ACCATACG
1 GCACTAAGTGTGCG-ATTTGACTATGTG
* * *
67479139 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
67479167 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
67479194 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67479207 AAGATGATTA
Statistics
Matches: 96, Mismatches: 21, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
26 1 0.01
27 74 0.77
28 21 0.22
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:67479224 original size:27 final size:27
Alignment explanation
Indices: 67479165--67479233 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
67479155 TCTGACTATG
* ** *
67479165 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCAAGATGATTACA
* *
67479192 TGGCACTAAGTGTGCAAGATGATTATA
1 TAGCACTAAGTGTGCAAGATGATTACA
*
67479219 TAGCACTGAGTGTGC
1 TAGCACTAAGTGTGC
67479234 GGGCTCAATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCAAGATGATTACA
Found at i:67479234 original size:82 final size:79
Alignment explanation
Indices: 67479057--67479208 Score: 189
Period size: 82 Copynumber: 1.9 Consensus size: 79
67479047 TAAATTGTAC
* * * *
67479057 AGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
67479122 TGCGAATTTACCAT
66 TGCAAATTTACCAT
** *
67479136 ACGGCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 A--GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
67479200 AGTGTGCAA
62 AGTGTGCAA
67479209 GATGATTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 1 0.02
81 15 0.25
82 45 0.74
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (79 bp):
AGCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCAAATTTACCAT
Found at i:67480615 original size:27 final size:27
Alignment explanation
Indices: 67480585--67480677 Score: 109
Period size: 27 Copynumber: 3.4 Consensus size: 27
67480575 GGGTGTTACA
*
67480585 TTACCCTTGATTTACAGAATTACTGGT
1 TTACCCTTGATTTACAGAATTACTGTT
* *
67480612 TTACCC-TCAGTTTACAAAATTA-TCGTT
1 TTACCCTTGA-TTTACAGAATTACT-GTT
* *
67480639 TTACCCTCGATTTACAGAATTACCGTT
1 TTACCCTTGATTTACAGAATTACTGTT
67480666 TTACCCTTGATT
1 TTACCCTTGATT
67480678 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.41
Consensus pattern (27 bp):
TTACCCTTGATTTACAGAATTACTGTT
Found at i:67480712 original size:27 final size:27
Alignment explanation
Indices: 67480682--67480877 Score: 266
Period size: 27 Copynumber: 7.3 Consensus size: 27
67480672 TTGATTGTGA
*
67480682 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67480709 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67480736 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67480763 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67480790 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
67480817 AAATACGGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
67480844 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
67480871 AATTACC
1 AATTACC
67480878 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:67481312 original size:25 final size:26
Alignment explanation
Indices: 67481281--67481377 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 26
67481271 GCATTCACAT
*
67481281 TCTGATTTTGATTCTGTTACCTGATATCGA
1 TCTGATTCTGATTCTGTTACCTG--AT--A
*
67481311 TTCTGATTTTGATTCTGTTACCTGATA
1 -TCTGATTCTGATTCTGTTACCTGATA
* *
67481338 -CTGATTCTGATTCTGTCACCTAAT-
1 TCTGATTCTGATTCTGTTACCTGATA
*
67481362 TTTGATTCTGATTCTG
1 TCTGATTCTGATTCTG
67481378 ATTCTAGTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
25 35 0.57
27 1 0.02
29 2 0.03
31 23 0.38
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (26 bp):
TCTGATTCTGATTCTGTTACCTGATA
Found at i:67481317 original size:31 final size:31
Alignment explanation
Indices: 67481279--67481349 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
67481269 TTGCATTCAC
67481279 ATTCTGATTTTGATTCTGTTACCTGATA-TCG
1 ATTCTGATTTTGATTCTGTTACCTGATACT-G
67481310 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
67481341 ATTCTGATT
1 ATTCTGATT
67481350 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 38 0.97
32 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:67481323 original size:6 final size:6
Alignment explanation
Indices: 67481279--67481391 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
67481269 TTGCATTCAC
* *
67481279 ATTCTG ATTTTG ATTCTG -TTACCTG ATATC-G ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * *
67481328 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
67481378 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
67481392 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 8 0.10
6 60 0.73
7 10 0.12
8 3 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:67481373 original size:31 final size:29
Alignment explanation
Indices: 67481279--67481382 Score: 99
Period size: 31 Copynumber: 3.6 Consensus size: 29
67481269 TTGCATTCAC
* *
67481279 ATTCTGATTTTGATTCTGTTACCTGATATCG
1 ATTCTGATTCTGATTCTGTTACCT-AT-TTG
*
67481310 ATTCTGATTTTGATTCTGTTACC----TG
1 ATTCTGATTCTGATTCTGTTACCTATTTG
* *
67481335 ATACTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTACCT-A-TTTG
67481366 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
67481383 AGTTCTGATA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
25 21 0.34
31 41 0.66
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTTACCTATTTG
Found at i:67482186 original size:37 final size:37
Alignment explanation
Indices: 67482132--67482205 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
67482122 TAACTTGTTC
67482132 GTGTACATACCTATACCTCACGTAATATAGTCACATA
1 GTGTACATACCTATACCTCACGTAATATAGTCACATA
*
67482169 GTGTACATACCTGTACCTCACGTAATATAGTCACATA
1 GTGTACATACCTATACCTCACGTAATATAGTCACATA
67482206 CTTTTTTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (37 bp):
GTGTACATACCTATACCTCACGTAATATAGTCACATA
Found at i:67485960 original size:44 final size:42
Alignment explanation
Indices: 67485906--67486026 Score: 165
Period size: 44 Copynumber: 2.8 Consensus size: 42
67485896 TTCCGATATG
*
67485906 TGATTTTGTGTAAGACCATGTCTGGGACATTGGCATTG-ATT
1 TGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
67485947 TGAGATTTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
1 T--GATTT-TGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
* *
67485992 TGATTTTCGT-TAAGACCCTGTCTGGGACAGTGGCA
1 TGATTTT-GTGTAAGACCATGTCTGGGACATTGGCA
67486027 CTAATATTTG
Statistics
Matches: 72, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
41 1 0.01
42 24 0.33
43 12 0.17
44 31 0.43
45 4 0.06
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
Found at i:67486049 original size:43 final size:43
Alignment explanation
Indices: 67485913--67486069 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 43
67485903 ATGTGATTTT
*
67485913 GTGTAAGACCATGTCTGGGACATTGGCAT--TGATTTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACATTGGCATAAT-ATTT--GATTTAC
** *
67485957 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATAATATTTGATTTAC
* *
67486000 GT-TAAGACCCTGTCTGGGACAGTGGCACTAATATTTGA-TTAC
1 GTGTAAGACCATGTCTGGGACATTGGCA-TAATATTTGATTTAC
* * * *
67486042 ATGTAAGACCGTGTGTGGGA-GTTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
67486070 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 32 0.33
43 30 0.31
44 29 0.30
45 4 0.04
46 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATAATATTTGATTTAC
Found at i:67495956 original size:43 final size:42
Alignment explanation
Indices: 67495896--67496052 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 42
67495886 AACATATACA
*
67495896 ATGCCAAC-GTCCCAGACATGATCTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAATCAAACAT-G
* * * * * * *
67495939 ATGCCACTGTCCTAGACAGGGTCTTATAGGAAATCAGATATG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAATCAAACATG
* * * *
67495981 ATGTCGA-TGTCCCAGACATGGTCTTACATGTAAAACAGAA-GTCC
1 ATG-CCACTGTCCCAGACATGGTCTTACATGT-AATCA-AACAT-G
67496025 ATGCCAAC-GTCCCAGACATGGTCTTACA
1 ATGCC-ACTGTCCCAGACATGGTCTTACA
67496053 CAAAATCCTA
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 25 0.28
43 38 0.43
44 25 0.28
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAATCAAACATG
Found at i:67505359 original size:26 final size:26
Alignment explanation
Indices: 67505330--67505383 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
67505320 CACAGGTATT
67505330 TACATGAGATATATGA-AAATGATTTG
1 TACATGAGATATA-GATAAATGATTTG
* *
67505356 TACATGATATATAGATACATGATTTG
1 TACATGAGATATAGATAAATGATTTG
67505382 TA
1 TA
67505384 AATTATATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.41, C:0.06, G:0.17, T:0.37
Consensus pattern (26 bp):
TACATGAGATATAGATAAATGATTTG
Found at i:67506776 original size:12 final size:12
Alignment explanation
Indices: 67506759--67506786 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
67506749 GTCACTACGT
67506759 CTTGACTGGCAG
1 CTTGACTGGCAG
67506771 CTTGACTGGCAG
1 CTTGACTGGCAG
67506783 CTTG
1 CTTG
67506787 TGGGAGTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.25, G:0.32, T:0.29
Consensus pattern (12 bp):
CTTGACTGGCAG
Found at i:67506989 original size:24 final size:24
Alignment explanation
Indices: 67506962--67507009 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
67506952 GGATGTAAGA
67506962 AATGTTATGGATCAGTTTAGGTAC
1 AATGTTATGGATCAGTTTAGGTAC
67506986 AATGTTATGGATCAGTTTAGGTAC
1 AATGTTATGGATCAGTTTAGGTAC
67507010 TCATGATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (24 bp):
AATGTTATGGATCAGTTTAGGTAC
Found at i:67512060 original size:37 final size:37
Alignment explanation
Indices: 67512010--67512088 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67512000 TTATTACGAA
* *
67512010 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
67512047 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
67512084 GTCTT
1 GTCTT
67512089 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:67512285 original size:47 final size:47
Alignment explanation
Indices: 67512207--67512836 Score: 1089
Period size: 47 Copynumber: 13.4 Consensus size: 47
67512197 CCCTTCGGGA
* * * * * * *
67512207 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67512254 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67512301 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67512348 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67512395 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67512442 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67512489 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67512536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67512583 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67512630 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67512677 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67512724 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67512771 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67512818 CTTATCACATATATACACT
1 CTTATCACATATATACACT
67512837 GTCTTGGCTG
Statistics
Matches: 556, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 556 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67516849 original size:27 final size:27
Alignment explanation
Indices: 67516819--67516994 Score: 194
Period size: 27 Copynumber: 6.5 Consensus size: 27
67516809 ATTGAGTCCA
* * * *
67516819 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAAATCG
*
67516846 CACACTTAGTGCTACATAATCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
67516873 CAC-CGTTAGTGCTACATAGTCAAACTCG
1 CACAC-TTAGTGCTACATAGTCAAA-TCG
** * *
67516901 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* **
67516928 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAAATCG
*
67516955 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
67516982 CACACTTAGTGCT
1 CACACTTAGTGCT
67516995 GTACAATTTA
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAAATCG
Found at i:67516956 original size:82 final size:81
Alignment explanation
Indices: 67516838--67516993 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
67516828 TGCTATATAA
*
67516838 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCAC-CGTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACAC-TTAGTGCAACATAGTCAAA-TCGC
67516902 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
67516920 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67516984 CACTTAGTGC
65 CACTTAGTGC
67516994 TGTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 16 0.24
82 50 0.75
83 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67524989 original size:27 final size:27
Alignment explanation
Indices: 67524959--67525136 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
67524949 ATATTGAGTC
* * * *
67524959 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
67524986 CGCACGCTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
67525013 CGCACCCTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
67525041 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
67525068 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
67525095 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67525122 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67525137 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:67525098 original size:82 final size:81
Alignment explanation
Indices: 67524980--67525135 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
67524970 TGCTATATAA
* * *
67524980 TCAACTCGCACGCTTAGTGCTACATAATCAAATCGCACCCTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67525045 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67525062 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67525126 CACTTAGTGC
65 CACTTAGTGC
67525136 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67528958 original size:51 final size:51
Alignment explanation
Indices: 67528867--67528991 Score: 130
Period size: 51 Copynumber: 2.5 Consensus size: 51
67528857 TCGATGACAT
* * *
67528867 GTGTGGTACTAAGTGCAAGCCACTATGTGTAAAATATAGCTTTG-GTCACAA
1 GTGTGGTACTATGTGCAAGCCACTATGTGTAAAAGATAGCTTTGACT-ACAA
* *
67528918 GTGTGGTACTATGTG-AAGGCCACTTTGTG-AAGAAGGTAGCTTTGACTACAA
1 GTGTGGTACTATGTGCAA-GCCACTATGTGTAA-AAGATAGCTTTGACTACAA
* * *
67528969 GGGTGGTATTATGTGCAACCCAC
1 GTGTGGTACTATGTGCAAGCCAC
67528992 CGAGCATCCG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
50 4 0.06
51 55 0.89
52 3 0.05
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (51 bp):
GTGTGGTACTATGTGCAAGCCACTATGTGTAAAAGATAGCTTTGACTACAA
Found at i:67532110 original size:30 final size:30
Alignment explanation
Indices: 67532074--67532133 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67532064 TTCCCGAGCC
*
67532074 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
67532104 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
67532134 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:67536058 original size:44 final size:44
Alignment explanation
Indices: 67536008--67536113 Score: 185
Period size: 44 Copynumber: 2.4 Consensus size: 44
67535998 CCAGACAGGG
67536008 TCTTACTCGCACACAAATATCAGAATCACATATCGATGCCATGA
1 TCTTACTCGCACACAAATATCAGAATCACATATCGATGCCATGA
* *
67536052 TCTTACTCGCACACAGATATCAGAATCACATATCGATGCCATGG
1 TCTTACTCGCACACAAATATCAGAATCACATATCGATGCCATGA
*
67536096 TCTTACTCGCACAGAAAT
1 TCTTACTCGCACACAAAT
67536114 TGGAATCCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (44 bp):
TCTTACTCGCACACAAATATCAGAATCACATATCGATGCCATGA
Found at i:67543866 original size:39 final size:39
Alignment explanation
Indices: 67543822--67544054 Score: 322
Period size: 39 Copynumber: 6.0 Consensus size: 39
67543812 ATTATATTAT
* ** *
67543822 CAGCACAAAGCCTATGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
67543861 CAGCACGAAGCCTGCGGGACTTTGGCCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
67543900 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
67543939 CAGCACGAAGCCTGCGGGACTGTAGCCTGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
67543978 CAGGACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * *
67544017 CAGCACGAAGCATGCGAGATTTTAGCCTGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
67544055 TCAGTGTCTT
Statistics
Matches: 174, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 174 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:67549689 original size:39 final size:39
Alignment explanation
Indices: 67549645--67549877 Score: 394
Period size: 39 Copynumber: 6.0 Consensus size: 39
67549635 ATTATATTAT
* *
67549645 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
67549684 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
67549723 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
67549762 CAGCACGAAGCTTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
67549801 CAGCACGAAGCCTGCGAGACTTTACCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
67549840 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
67549878 TCAGTGTCTT
Statistics
Matches: 182, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 182 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:67554918 original size:46 final size:46
Alignment explanation
Indices: 67554861--67555169 Score: 142
Period size: 46 Copynumber: 6.6 Consensus size: 46
67554851 GGTGGTATGT
* * * *
67554861 GAGCTAGTGTAAGACATATCTGGGACATGCAACAGCCA-CGATATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAAC-GACATCGAGATGA
* * * *
67554907 GATCCAGTGTAAGACATGTATGGGACATGCATCGACATTGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAACGACATCGAGATGA
* * * * * * *
67554953 GAGCTAGTGTAACACATGTCTGGGACATGCATCGGCCTCGGGATATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAACGACATCGAGAT-GA
* * * * * * *
67555000 CAAGCTAGTGTAAGACTTGTCTGGGACATGGCATC-AGC-T--TGTTGT
1 -GAGCCAGTGTAAGACATGTCTGGGACAT-GCAACGA-CATCGAGATGA
* ** * * *
67555045 GTGTTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCAACGACATCG--AGATGA
* * * * * * *
67555094 GAGCTAGTGTAAGACCTGCCTGGGACATGACATCGGCCTCGAAATATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATG-CAACGACATCG--AGATGA
* * *
67555143 AAGTCAGTGTAAGACCTGTCTGGGACA
1 GAGCCAGTGTAAGACATGTCTGGGACA
67555170 CAACATTGAC
Statistics
Matches: 206, Mismatches: 45, Indels: 21
0.76 0.17 0.08
Matches are distributed among these distances:
44 31 0.15
45 4 0.02
46 72 0.35
47 1 0.00
48 27 0.13
49 71 0.34
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCAACGACATCGAGATGA
Found at i:67555117 original size:49 final size:48
Alignment explanation
Indices: 67554912--67555169 Score: 160
Period size: 49 Copynumber: 5.5 Consensus size: 48
67554902 TATGAGATCC
* * * * *
67554912 AGTGTAAGACATGTATGGGACATG-CATCGACATTG--AGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGAAAGATGAAAG-T
* * * ** *
67554958 AGTGTAACACATGTCTGGGACATG-CATCGGCCTCGGGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGAAAGATGA-AAG-T
* * * * ** *
67555006 AGTGTAAGACTTGTCTGGGACATGGCATC-AGCTTG-TTG-TG--TGTT
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGAAAGATGAAAG-T
* * *
67555050 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGAAAGATGAAAG-T
* * *
67555099 AGTGTAAGACCTGCCTGGGACATGACATCGGCCTCGAAATATGAAAGT
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGAAAGATGAAAGT
67555147 CAGTGTAAGACCTGTCTGGGACA
1 -AGTGTAAGACCTGTCTGGGACA
67555170 CAACATTGAC
Statistics
Matches: 169, Mismatches: 30, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
44 30 0.18
45 2 0.01
46 34 0.20
47 3 0.02
48 34 0.20
49 66 0.39
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGAAAGATGAAAGT
Found at i:67555165 original size:142 final size:138
Alignment explanation
Indices: 67554912--67555169 Score: 358
Period size: 142 Copynumber: 1.8 Consensus size: 138
67554902 TATGAGATCC
** *
67554912 AGTGTAAGACATGTATGGGACATGCATCGACATTGAGATGAGAGCTAGTGTAACACATGTCTGGG
1 AGTGTAAGACATGTATGGGACATGCATCGACACCGAGATGAGAGCTAGTGTAACACATGCCTGGG
** *
67554977 ACATGCATCGGCCTCGGGATATACAAGCTAGTGTAAGACTTGTCTGGGACATGGCATCAGCTTGT
66 ACATGCATCGGCCTCGAAATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGT
67555042 TGTGTGTT
131 TGTGTGTT
* * * *
67555050 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCTAGTGTAAGACCTGCCT
1 AGTGTAAGACATGTATGGGACAT-GCATCGACACCG--AGATGAGAGCTAGTGTAACACATGCCT
67555115 GGGACATGACATCGGCCTCGAAATATGA-AAG-TCAGTGTAAGACCTGTCTGGGACA
63 GGGACATG-CATCGGCCTCGAAATAT-ACAAGCT-AGTGTAAGACCTGTCTGGGACA
67555170 CAACATTGAC
Statistics
Matches: 104, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
138 21 0.20
139 10 0.10
141 33 0.32
142 39 0.38
143 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (138 bp):
AGTGTAAGACATGTATGGGACATGCATCGACACCGAGATGAGAGCTAGTGTAACACATGCCTGGG
ACATGCATCGGCCTCGAAATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGT
TGTGTGTT
Found at i:67556510 original size:20 final size:21
Alignment explanation
Indices: 67556471--67556510 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
67556461 GTTAACAGGG
67556471 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
67556492 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
67556511 ATTCCAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:67564181 original size:40 final size:42
Alignment explanation
Indices: 67564089--67564183 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 42
67564079 AAATGATCCT
*
67564089 GCACACTTAGTGCAATCTCAAATAGCCGAAGCTACCTCAGTATC
1 GCACACTTAGTGC-A-CTCAAATAGCCAAAGCTACCTCAGTATC
* *
67564133 GCACACTTAGTGC-CTCATATAGCCAAAGCTA-TTCCA-TATC
1 GCACACTTAGTGCACTCAAATAGCCAAAGCTACCT-CAGTATC
67564173 GCACACTTAGT
1 GCACACTTAGT
67564184 TCTATTTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
40 16 0.34
41 18 0.38
44 13 0.28
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (42 bp):
GCACACTTAGTGCACTCAAATAGCCAAAGCTACCTCAGTATC
Found at i:67566755 original size:12 final size:12
Alignment explanation
Indices: 67566738--67566762 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67566728 AACTCTAAAA
67566738 TCTAAATCAGAC
1 TCTAAATCAGAC
67566750 TCTAAATCAGAC
1 TCTAAATCAGAC
67566762 T
1 T
67566763 GAGCTCGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (12 bp):
TCTAAATCAGAC
Found at i:67571446 original size:55 final size:53
Alignment explanation
Indices: 67571315--67571513 Score: 159
Period size: 54 Copynumber: 3.7 Consensus size: 53
67571305 TAAACTAACT
*
67571315 AATGCCATGTCTTGACATGGTCTTACGTGGCATCCTTGCCTTATGAACACATC
1 AATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATGAACACATC
* * * * ****
67571368 ATTGCCATGCCTTGGA-ATGGTCTTACATGGGATCTTTGCCTTATTGTAGTTTATC
1 AATGCCATGTCTT-GACATGGTCTTACATGGCATCCTTGCCTTA-TG-AACACATC
*** * * *
67571423 AATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGT-AAAACTTACC
1 AATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATGAACAC--ATC
** * * *
67571477 AATGCCATACCTTGGCATGGTCTTACTTGGTATCCTT
1 AATGCCATGTCTTGACATGGTCTTACATGGCATCCTT
67571514 AAACCCTAAT
Statistics
Matches: 113, Mismatches: 27, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
52 1 0.01
53 35 0.31
54 40 0.35
55 37 0.33
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
AATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATGAACACATC
Found at i:67578846 original size:53 final size:54
Alignment explanation
Indices: 67578761--67578967 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
67578751 TTTCTTTTTA
* * *
67578761 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
67578814 AACTCACCATTGCGATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** ** * * * * *
67578868 TAGTTTATTAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
67578923 AACTTACCAATGCCATACCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
67578968 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 45 0.38
54 36 0.30
55 38 0.32
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:67596199 original size:53 final size:53
Alignment explanation
Indices: 67596138--67596243 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
67596128 AATTTAGACA
*
67596138 CATTTATTTAGACTAAACTATATTAACTAAGTTAATTAAATAGCTAGTAGCTT
1 CATTTATTTAGACTAAACTATATTAACTAAGTTAATTAAATAGCTAGCAGCTT
67596191 CATTTATTTAGACTAAACTATATTAACTAAGTTAATTAAATAGCTAGCAGCTT
1 CATTTATTTAGACTAAACTATATTAACTAAGTTAATTAAATAGCTAGCAGCTT
67596244 TAGAATGCAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (53 bp):
CATTTATTTAGACTAAACTATATTAACTAAGTTAATTAAATAGCTAGCAGCTT
Found at i:67598343 original size:19 final size:15
Alignment explanation
Indices: 67598302--67598334 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67598292 GTACTAATTA
67598302 AACACATAGATAGGC
1 AACACATAGATAGGC
67598317 AACACATAGATAGGC
1 AACACATAGATAGGC
67598332 AAC
1 AAC
67598335 CAAAACATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.21, G:0.18, T:0.12
Consensus pattern (15 bp):
AACACATAGATAGGC
Found at i:67599287 original size:43 final size:43
Alignment explanation
Indices: 67599240--67599358 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 43
67599230 TGTTATCACA
* *
67599240 TAACGATGTCACTGTCCCAGA-TAGGGTCTTACACGAAATCAAC
1 TAACGATGCCAATGTCCCAGACT-GGGTCTTACACGAAATCAAC
* *
67599283 TAACGATGCCAATGTCCCAGACTTGGTCTTACACGTAATCTCAA-
1 TAACGATGCCAATGTCCCAGACTGGGTCTTACACG-AA-ATCAAC
* *
67599327 T-ACAATGCCAATGCCCCAGACAT-GGTCTTACA
1 TAACGATGCCAATGTCCCAGAC-TGGGTCTTACA
67599359 TGTAATCACA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 57 0.86
44 5 0.08
45 4 0.06
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
TAACGATGCCAATGTCCCAGACTGGGTCTTACACGAAATCAAC
Found at i:67600369 original size:13 final size:13
Alignment explanation
Indices: 67600351--67600381 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
67600341 TGTCAACGCT
67600351 TTTGAAAAGTGCC
1 TTTGAAAAGTGCC
*
67600364 TTTGAAAAGTGCT
1 TTTGAAAAGTGCC
67600377 TTTGA
1 TTTGA
67600382 GAAATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (13 bp):
TTTGAAAAGTGCC
Found at i:67600541 original size:30 final size:30
Alignment explanation
Indices: 67600507--67600634 Score: 74
Period size: 31 Copynumber: 4.3 Consensus size: 30
67600497 CTTCTTATTA
67600507 ATATTTTAATATATAAAATATAAATTTTAT
1 ATATTTTAATATATAAAATATAAATTTTAT
*
67600537 ATATTTTTAAGTA-AT-AAATATTAATTATTTAT
1 ATA-TTTTAA-TATATAAAATA-TAAAT-TTTAT
* * * *
67600569 AAAATTTAAT-TAGAATATATAAA---T-T
1 ATATTTTAATATATAAAATATAAATTTTAT
* * *
67600594 ATATTTTAGATAT-TTAAATATAAATATTAA
1 ATATTTTA-ATATATAAAATATAAATTTTAT
67600624 ATATTTGTAAT
1 ATATTT-TAAT
67600635 TAGTATTTTA
Statistics
Matches: 73, Mismatches: 12, Indels: 26
0.66 0.11 0.23
Matches are distributed among these distances:
25 7 0.10
26 11 0.15
27 1 0.01
29 1 0.01
30 21 0.29
31 23 0.32
32 9 0.12
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
ATATTTTAATATATAAAATATAAATTTTAT
Found at i:67600625 original size:33 final size:30
Alignment explanation
Indices: 67600550--67600629 Score: 76
Period size: 33 Copynumber: 2.6 Consensus size: 30
67600540 TTTTTAAGTA
67600550 ATAAATATT-AATTATTTATAAAATTTAAT
1 ATAAATATTAAATTATTTATAAAATTTAAT
* *
67600579 -TAGAATATATAAATTATATTTTAGATATTTAAAT
1 ATA-AATAT-TAAATTAT-TTATA-AAATTT-AAT
67600613 ATAAATATTAAA-TATTT
1 ATAAATATTAAATTATTT
67600630 GTAATTAGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
28 2 0.05
29 5 0.12
30 1 0.02
31 8 0.19
32 7 0.17
33 9 0.21
34 8 0.19
35 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (30 bp):
ATAAATATTAAATTATTTATAAAATTTAAT
Found at i:67601318 original size:20 final size:20
Alignment explanation
Indices: 67601293--67601330 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67601283 GTCAGATATA
67601293 TCATGAACTCAGACCACAAG
1 TCATGAACTCAGACCACAAG
* *
67601313 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
67601331 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAG
Found at i:67603893 original size:39 final size:40
Alignment explanation
Indices: 67603850--67603981 Score: 108
Period size: 40 Copynumber: 3.3 Consensus size: 40
67603840 CCGACATAAA
67603850 GCCTGCTAGGCCTAAGCCTGTATTT-TACACCGGCACAAG
1 GCCTGCTAGGCCTAAGCCTGTATTTATACACCGGCACAAG
* * * * * *
67603889 GCCTGCTAGACTCAAAGTCTGATTTTTATACACCGGTA-ATAA
1 GCCTGCTAGGC-CTAAGCCTG-TATTTATACACCGGCACA-AG
* * * *
67603931 GCCTGCTAGGCATAAGCCCG-ATTTAATTCACCAGCACAAG
1 GCCTGCTAGGCCTAAGCCTGTATTT-ATACACCGGCACAAG
*
67603971 GCTTGCTAGGC
1 GCCTGCTAGGC
67603982 TTAAAGCTCG
Statistics
Matches: 70, Mismatches: 17, Indels: 11
0.71 0.17 0.11
Matches are distributed among these distances:
39 13 0.19
40 26 0.37
41 11 0.16
42 20 0.29
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCCTGCTAGGCCTAAGCCTGTATTTATACACCGGCACAAG
Found at i:67605160 original size:14 final size:15
Alignment explanation
Indices: 67605143--67605171 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
67605133 TAACGAAAAT
67605143 TTCACACAT-ATAAA
1 TTCACACATGATAAA
67605157 TTCACACATGATAAA
1 TTCACACATGATAAA
67605172 CAGTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
TTCACACATGATAAA
Found at i:67606555 original size:47 final size:47
Alignment explanation
Indices: 67606491--67606622 Score: 210
Period size: 47 Copynumber: 2.8 Consensus size: 47
67606481 TTACATGGAT
*
67606491 CACATATCACACTGATGCCATATCCCAGATATAGTCTTACACAGAAG
1 CACATATCACACTGATGCCATATCCCAGATATGGTCTTACACAGAAG
* *
67606538 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACAGAAG
1 CACATATCACACTGATGCCATATCCCAGATATGGTCTTACACAGAAG
** *
67606585 CTTATATCACACTGATGCCATATCCCAGCTATGGTCTT
1 CACATATCACACTGATGCCATATCCCAGATATGGTCTT
67606623 GTACGGAAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (47 bp):
CACATATCACACTGATGCCATATCCCAGATATGGTCTTACACAGAAG
Found at i:67630783 original size:13 final size:13
Alignment explanation
Indices: 67630765--67630793 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67630755 TATTTTGATG
67630765 AATGTGTGTATTA
1 AATGTGTGTATTA
67630778 AATGTGTGTATTA
1 AATGTGTGTATTA
67630791 AAT
1 AAT
67630794 AAATTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (13 bp):
AATGTGTGTATTA
Found at i:67631210 original size:46 final size:46
Alignment explanation
Indices: 67631158--67631328 Score: 299
Period size: 46 Copynumber: 3.7 Consensus size: 46
67631148 TGGGCATCCA
*
67631158 AGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
67631204 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
*
67631250 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTTG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-TG
*
67631296 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67631329 GCGGGTTACA
Statistics
Matches: 121, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
45 1 0.01
46 120 0.99
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.32
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
Found at i:67666959 original size:14 final size:15
Alignment explanation
Indices: 67666942--67666973 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
67666932 AAATCACAAA
67666942 AAATTCACACAT-AT
1 AAATTCACACATAAT
67666956 AAATTCACACATAAT
1 AAATTCACACATAAT
67666971 AAA
1 AAA
67666974 CACTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:67666995 original size:13 final size:13
Alignment explanation
Indices: 67666979--67667004 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67666969 ATAAACACTA
67666979 AAAATATTTTTTT
1 AAAATATTTTTTT
67666992 AAAATATTTTTTT
1 AAAATATTTTTTT
67667005 GACTCGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AAAATATTTTTTT
Found at i:67668672 original size:16 final size:15
Alignment explanation
Indices: 67668647--67668680 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
67668637 AAACCTGATA
*
67668647 ATAATTAATATATATT
1 ATAATAAATATA-ATT
67668663 ATAATAAATATAATT
1 ATAATAAATATAATT
67668678 ATA
1 ATA
67668681 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:67668680 original size:22 final size:19
Alignment explanation
Indices: 67668644--67668685 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
67668634 ACAAAACCTG
67668644 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
67668663 ATAATAAATATAATTATATATT
1 ATAAT-AAT-TAA-TATATATT
67668685 A
1 A
67668686 GTTATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 3 0.15
22 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:67668798 original size:28 final size:29
Alignment explanation
Indices: 67668745--67668801 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
67668735 TTTTTTTAAA
*
67668745 ATATTTACAAAAAGAGACAACTAATTTTG
1 ATATTTACAAAAAGACACAACTAATTTTG
*
67668774 ATATTTA-AAAAA-ACATAACTGAATTTTG
1 ATATTTACAAAAAGACACAACT-AATTTTG
67668802 CAAATAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 6 0.24
28 12 0.48
29 7 0.28
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (29 bp):
ATATTTACAAAAAGACACAACTAATTTTG
Found at i:67686341 original size:58 final size:58
Alignment explanation
Indices: 67686253--67686383 Score: 217
Period size: 58 Copynumber: 2.3 Consensus size: 58
67686243 CCAACCCAAT
* * *
67686253 CCAACCAGCATACCACCCGTACCAACCAACACACCATGTGGGGATTAAATCGACCCAC
1 CCAACCAACAAACCACCCATACCAACCAACACACCATGTGGGGATTAAATCGACCCAC
* *
67686311 CCAACCAACACACCACCCATACCAACCAACACACTATGTGGGGATTAAATCGACCCAC
1 CCAACCAACAAACCACCCATACCAACCAACACACCATGTGGGGATTAAATCGACCCAC
67686369 CCAACCAACAAACCA
1 CCAACCAACAAACCA
67686384 ATATCACAGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 68 1.00
ACGTcount: A:0.38, C:0.40, G:0.11, T:0.11
Consensus pattern (58 bp):
CCAACCAACAAACCACCCATACCAACCAACACACCATGTGGGGATTAAATCGACCCAC
Found at i:67688083 original size:17 final size:19
Alignment explanation
Indices: 67688055--67688090 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
67688045 AGAAAGATAC
67688055 CAAAAACACCAAAA-AGAA
1 CAAAAACACCAAAATAGAA
67688073 CAAAAAC-CCAAAATAGAA
1 CAAAAACACCAAAATAGAA
67688091 GAGGGAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.69, C:0.22, G:0.06, T:0.03
Consensus pattern (19 bp):
CAAAAACACCAAAATAGAA
Found at i:67702057 original size:28 final size:28
Alignment explanation
Indices: 67702026--67702082 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
67702016 CGAATTATCG
67702026 AGGATGGAACTTAGTGTGCAAGACATCC
1 AGGATGGAACTTAGTGTGCAAGACATCC
* * *
67702054 AGGATGGCACTTAGTGTGCGATACATCC
1 AGGATGGAACTTAGTGTGCAAGACATCC
67702082 A
1 A
67702083 TGAAGGCACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (28 bp):
AGGATGGAACTTAGTGTGCAAGACATCC
Found at i:67702067 original size:56 final size:56
Alignment explanation
Indices: 67701943--67702074 Score: 160
Period size: 56 Copynumber: 2.4 Consensus size: 56
67701933 CGAGTTTGAA
* * * *
67701943 AAATAGCACTTAGTGTGCGAGTTACTAGGATGGCACTTAGTGTGCGAAAAATCCAG
1 AAATGGCACTTAGTGTGCGAATTACGAGGATGGAACTTAGTGTGCGAAAAATCCAG
* * *
67701999 AAATGGCTCTTAGTGAGCGAATTATCGAGGATGGAACTTAGTGTGC-AAGACATCCAG
1 AAATGGCACTTAGTGTGCGAATTA-CGAGGATGGAACTTAGTGTGCGAA-AAATCCAG
*
67702056 -GATGGCACTTAGTGTGCGA
1 AAATGGCACTTAGTGTGCGA
67702075 TACATCCATG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
56 38 0.59
57 26 0.41
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (56 bp):
AAATGGCACTTAGTGTGCGAATTACGAGGATGGAACTTAGTGTGCGAAAAATCCAG
Found at i:67702090 original size:28 final size:28
Alignment explanation
Indices: 67702034--67702099 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
67702024 CGAGGATGGA
*
67702034 ACTTAGTGTGCAAGACATCCAGGATGGC
1 ACTTAGTGTGCAAGACATCCAGGAAGGC
* * *
67702062 ACTTAGTGTGCGATACATCCATGAAGGC
1 ACTTAGTGTGCAAGACATCCAGGAAGGC
*
67702090 ACTGAGTGTG
1 ACTTAGTGTG
67702100 TGAAACTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (28 bp):
ACTTAGTGTGCAAGACATCCAGGAAGGC
Found at i:67704865 original size:37 final size:37
Alignment explanation
Indices: 67704815--67704893 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
67704805 TTATTACGAA
* * * *
67704815 GTCTTACCCGGACATAATCTCCACAGGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
67704852 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
67704889 GTCTT
1 GTCTT
67704894 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:67705210 original size:47 final size:47
Alignment explanation
Indices: 67705011--67705281 Score: 463
Period size: 47 Copynumber: 5.7 Consensus size: 47
67705001 GCCCTTCGGG
*
67705011 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
67705061 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
67705110 ACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67705156 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67705203 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67705250 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
67705282 ATACTATCAT
Statistics
Matches: 217, Mismatches: 3, Indels: 5
0.96 0.01 0.02
Matches are distributed among these distances:
46 36 0.17
47 95 0.44
48 9 0.04
49 73 0.34
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:67705219 original size:25 final size:25
Alignment explanation
Indices: 67705143--67705221 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
67705133 CATTAGCCTT
67705143 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
67705168 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
67705190 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
67705215 ATCACAT
1 ATCACAT
67705222 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:67722465 original size:47 final size:47
Alignment explanation
Indices: 67722387--67722556 Score: 241
Period size: 47 Copynumber: 3.6 Consensus size: 47
67722377 CCCTTCGGGA
* * * * * *
67722387 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67722434 CCTGTCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67722481 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67722528 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
67722557 TATTCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
47 90 0.83
49 19 0.17
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67735318 original size:93 final size:93
Alignment explanation
Indices: 67735159--67735330 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
67735149 AGGATATTTG
* * * * *
67735159 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCAAATGTTCGAACTCTTTGAG
1 GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCTTTGAG
67735224 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
67735252 GGCATCCGAGCTCGTTGAGCTGAGTCTGAGTTCACTTGTGGATGCAAACGCTCGAGCT-TATTGA
1 GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCT-TTGA
*
67735316 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
67735331 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCTTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67738147 original size:35 final size:35
Alignment explanation
Indices: 67738101--67738167 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
67738091 TGAGAAAATA
*
67738101 CATATGATATTATGATTTTGTTTCTTCTACTTGAT
1 CATATGATATTATGATTCTGTTTCTTCTACTTGAT
67738136 CATATGATATTATGATTCTGTTTCTTCTACTT
1 CATATGATATTATGATTCTGTTTCTTCTACTT
67738168 AATGCTTCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.22, C:0.13, G:0.10, T:0.54
Consensus pattern (35 bp):
CATATGATATTATGATTCTGTTTCTTCTACTTGAT
Found at i:67738355 original size:15 final size:15
Alignment explanation
Indices: 67738335--67738412 Score: 88
Period size: 15 Copynumber: 5.2 Consensus size: 15
67738325 CATAGTATCG
*
67738335 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
*
67738350 TATCTTGGATCTCTT
1 TATCTTGGATTTCTT
67738365 TAT-TCTGGATTTCTT
1 TATCT-TGGATTTCTT
* *
67738380 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTT
67738395 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
67738410 TAT
1 TAT
67738413 TCGGTTTTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
14 1 0.02
15 52 0.96
16 1 0.02
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:67740822 original size:46 final size:46
Alignment explanation
Indices: 67740766--67740933 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
67740756 TATTTGGGCA
*
67740766 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67740812 TCTGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGAT--G--TA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAATG
*
67740851 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67740897 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67740934 GCGAGTTACA
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
39 27 0.26
41 2 0.02
42 5 0.05
43 5 0.05
44 2 0.02
46 62 0.60
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67740876 original size:20 final size:20
Alignment explanation
Indices: 67740818--67740876 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
67740808 AATGTCTGAA
67740818 CTCGTTGAGTTGAGTCCGAG
1 CTCGTTGAGTTGAGTCCGAG
* * *
67740838 TTCG-AGAGATGTA-TCCGAG
1 CTCGTTGAGTTG-AGTCCGAG
67740857 CTCGTTGAGTTGAGTCCGAG
1 CTCGTTGAGTTGAGTCCGAG
67740877 TTCACTTATG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.29
Consensus pattern (20 bp):
CTCGTTGAGTTGAGTCCGAG
Found at i:67740908 original size:85 final size:85
Alignment explanation
Indices: 67740765--67740925 Score: 277
Period size: 85 Copynumber: 1.9 Consensus size: 85
67740755 ATATTTGGGC
* * *
67740765 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
67740830 AGTCCGAGTTCGAGAGATGT
66 AGTCCGAGTTCGAGAGATGT
* *
67740850 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
67740915 AGTCCGAGTTC
66 AGTCCGAGTTC
67740926 ATTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (85 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGT
Found at i:67743547 original size:53 final size:54
Alignment explanation
Indices: 67743365--67743571 Score: 245
Period size: 53 Copynumber: 3.8 Consensus size: 54
67743355 ATTAGGGTTT
* * * *
67743365 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
67743419 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * *
67743474 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
67743527 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
67743572 AAAAAGGAAA
Statistics
Matches: 126, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 46 0.37
54 37 0.29
55 43 0.34
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:67747122 original size:25 final size:25
Alignment explanation
Indices: 67747093--67747151 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
67747083 AGCTGTAAAT
* *
67747093 GGTAAGCTTCTCTAATCTAAATAAC
1 GGTAAGCTCCTCTAAGCTAAATAAC
* *
67747118 GGTAAGCTCCTCTGAGCTGAATAAC
1 GGTAAGCTCCTCTAAGCTAAATAAC
*
67747143 AGTAAGCTC
1 GGTAAGCTC
67747152 ATACGAGTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (25 bp):
GGTAAGCTCCTCTAAGCTAAATAAC
Found at i:67751467 original size:15 final size:15
Alignment explanation
Indices: 67751447--67751484 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
67751437 GTTTATTCTA
67751447 TGTTTTATGCTATTC
1 TGTTTTATGCTATTC
67751462 TGTTTTATGCTATTC
1 TGTTTTATGCTATTC
67751477 TGTTTTAT
1 TGTTTTAT
67751485 AGATTTTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.13, C:0.11, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTTTATGCTATTC
Found at i:67753042 original size:27 final size:26
Alignment explanation
Indices: 67752994--67753045 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67752984 GCGAGGCTGC
*
67752994 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
67753020 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67753046 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67754525 original size:26 final size:27
Alignment explanation
Indices: 67754496--67754549 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 27
67754486 TAAAATATAT
67754496 ATTTTAACAAA-C-CAGAACACACA-AAA
1 ATTTTAA-AAATCACAGAA-ACACAGAAA
67754522 ATTTTAAAAATCACAGAAACACAGAAA
1 ATTTTAAAAATCACAGAAACACAGAAA
67754549 A
1 A
67754550 CCCGATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 3 0.12
26 13 0.52
27 9 0.36
ACGTcount: A:0.59, C:0.19, G:0.06, T:0.17
Consensus pattern (27 bp):
ATTTTAAAAATCACAGAAACACAGAAA
Found at i:67758231 original size:40 final size:40
Alignment explanation
Indices: 67758136--67758367 Score: 333
Period size: 40 Copynumber: 5.8 Consensus size: 40
67758126 TGGATGATAA
* * **
67758136 CCGGGCTAAGTCCCGAAGGTATTT-TGCGTTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTACAT
*
67758177 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
67758217 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
67758257 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
67758297 CCGGGCTAAGTCCCGAAGGCATTGGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
67758337 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67758368 AGCTATATTC
Statistics
Matches: 177, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 7 0.04
40 143 0.81
41 23 0.13
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:67764328 original size:15 final size:15
Alignment explanation
Indices: 67764279--67764343 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
67764269 CAAAGATAAC
67764279 AAGGAAA-CC-GAAT
1 AAGGAAATCCAGAAT
*
67764292 AAAGAAATCCA-AGAT
1 AAGGAAATCCAGA-AT
67764307 -AGAGAAATCCAGAAT
1 AAG-GAAATCCAGAAT
67764322 AAGGAAATCCAGAAT
1 AAGGAAATCCAGAAT
67764337 AAAGGAA
1 -AAGGAA
67764344 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
13 6 0.14
14 4 0.09
15 24 0.56
16 9 0.21
ACGTcount: A:0.57, C:0.12, G:0.20, T:0.11
Consensus pattern (15 bp):
AAGGAAATCCAGAAT
Found at i:67770304 original size:17 final size:17
Alignment explanation
Indices: 67770274--67770307 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67770264 CATACAAAAC
*
67770274 TTTTTGAAACTTATACA
1 TTTTTCAAACTTATACA
*
67770291 TTTTTCAAAGTTATACA
1 TTTTTCAAACTTATACA
67770308 GGTCACACGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
TTTTTCAAACTTATACA
Found at i:67771496 original size:40 final size:40
Alignment explanation
Indices: 67771447--67771539 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
67771437 CTCGGTATCA
*
67771447 CACACTTAGTGCCCCATATAGCCGAAGCTA-TTCCAACTCG
1 CACACTTAGTGCCACATATAGCCGAAGCTATTTCCAACT-G
** * * *
67771487 CACACTTAGTGCCATTTTTAGCTGAAGCTATTTCGAACTG
1 CACACTTAGTGCCACATATAGCCGAAGCTATTTCCAACTG
67771527 CACACTTAGTGCC
1 CACACTTAGTGCC
67771540 GAACATAGTC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 39 0.85
41 7 0.15
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCACATATAGCCGAAGCTATTTCCAACTG
Found at i:67780192 original size:22 final size:22
Alignment explanation
Indices: 67780162--67780205 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
67780152 TGGTAAGGCT
*
67780162 AATCGGTAGGCTAATGGTCCAA
1 AATCAGTAGGCTAATGGTCCAA
67780184 AATCAGTAGGCTAATGGTCCAA
1 AATCAGTAGGCTAATGGTCCAA
67780206 CTCTCTTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (22 bp):
AATCAGTAGGCTAATGGTCCAA
Found at i:67789957 original size:21 final size:21
Alignment explanation
Indices: 67789928--67789971 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
67789918 TTCAAAATTA
*
67789928 ATTCATTTAAT-CACCAACAC
1 ATTCATTTAATACACAAACAC
67789948 ATTCAATTTAATACACAAACAC
1 ATTC-ATTTAATACACAAACAC
67789970 AT
1 AT
67789972 ATTTGGGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 7 0.33
22 10 0.48
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (21 bp):
ATTCATTTAATACACAAACAC
Found at i:67792847 original size:46 final size:46
Alignment explanation
Indices: 67792797--67792969 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
67792787 TTGAGCATCC
*
67792797 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * * * * *
67792843 GAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
* *
67792890 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
67792936 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67792970 GTGGGTTACA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.59
47 27 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:67792950 original size:93 final size:93
Alignment explanation
Indices: 67792791--67792961 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67792781 GGATGGTTGA
* *
67792791 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
*
67792856 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
67792884 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
67792949 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67792962 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67793227 original size:19 final size:20
Alignment explanation
Indices: 67793190--67793227 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67793180 ATAAGGTGGT
67793190 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67793210 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67793228 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67799554 original size:40 final size:40
Alignment explanation
Indices: 67799471--67799813 Score: 476
Period size: 40 Copynumber: 8.6 Consensus size: 40
67799461 TTGAATGCTG
* * * * * *
67799471 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67799511 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67799551 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67799591 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67799631 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67799671 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67799711 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67799751 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67799790 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67799814 TGAACGAGGA
Statistics
Matches: 279, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.13
40 236 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67806971 original size:40 final size:40
Alignment explanation
Indices: 67806888--67807220 Score: 386
Period size: 40 Copynumber: 8.6 Consensus size: 40
67806878 TTGAATGCTG
* * * * * *
67806888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67806928 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67806968 TCCGGGTTAAGT-CCG-AGGCATTCGTGCGAGTTATT-AA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67807005 T-C-GGTTAAGTCCCGAA-GCATTCGTGCGAGTTATT-AA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67807041 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67807080 T-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67807119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67807159 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67807198 ACC-GGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67807221 TGAACGAGGA
Statistics
Matches: 262, Mismatches: 21, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
35 8 0.03
36 25 0.10
37 5 0.02
38 82 0.31
39 41 0.16
40 93 0.35
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67807100 original size:113 final size:116
Alignment explanation
Indices: 67806888--67807202 Score: 376
Period size: 113 Copynumber: 2.7 Consensus size: 116
67806878 TTGAATGCTG
* * * * * * * *
67806888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGG-CA
67806951 TTGTGCGAGATACTAAATCCGGGTTAAGTCCGAGGCATTCGTGCGAGTTATT-AA
63 TTGTGCGAG-TACTAAATCCGGGTTAAGTCCGAGGCATTCGTGCGAGTTATTAAA
67807005 T-C-GGTTAAGTCCCGAA-GCATTCGTGCGAGTTATT-AATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-
**
67807066 GTGCGAGTGTTAAAT-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
65 GTGCGAGTACTAAATCCGGGTTAAGT-CCG-AGGCATTCGTGCGAGTTATTAAA
* *
67807119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
* *
67807184 TGTGAGTTACTAAAACCGG
66 TGCGAG-TACTAAATCCGG
67807203 CTATGTCCCG
Statistics
Matches: 170, Mismatches: 16, Indels: 22
0.82 0.08 0.11
Matches are distributed among these distances:
111 10 0.06
112 13 0.08
113 45 0.26
114 10 0.06
115 20 0.12
116 15 0.09
117 24 0.14
118 30 0.18
119 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (116 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGTACTAAATCCGGGTTAAGTCCGAGGCATTCGTGCGAGTTATTAAA
Found at i:67822239 original size:40 final size:40
Alignment explanation
Indices: 67822158--67822340 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
67822148 AATGATGTCT
* * *
67822158 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCC
* * *
67822198 GGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAATCC
*
67822238 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCC
*
67822278 GGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AATCC
*
67822318 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
67822341 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 109 0.89
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCC
Found at i:67824693 original size:40 final size:40
Alignment explanation
Indices: 67824581--67824783 Score: 243
Period size: 40 Copynumber: 5.1 Consensus size: 40
67824571 CAGATGATAA
* * *
67824581 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
*
67824621 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
**
67824660 CCGGGCTAAGTCCCGAAGGCATTCGTGATAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * * *
67824700 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
67824740 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
67824780 CCGG
1 CCGG
67824784 TTGAATTCCG
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:67824747 original size:80 final size:79
Alignment explanation
Indices: 67824577--67824764 Score: 270
Period size: 80 Copynumber: 2.4 Consensus size: 79
67824567 TATTCAGATG
* * *
67824577 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGATAGTGACTAATTCCGAGCTAAGCCCGAAGGCAA
*
67824642 TTGTGCGAGTTATT
66 TTGTGCGAGTTACT
* *
67824656 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGATAGTTACT-ATATCCGAGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGATAGTGACTAAT-TCCGAGCTAAG-CCCGAAGGC
* *
67824720 ATTTGTGCGAGTTCCT
64 AATTGTGCGAGTTACT
*
67824736 ATAACCGGGCTATGTCCCGAAGGCATTCG
1 ATAACCGGGCTAAGTCCCGAAGGCATTCG
67824765 AGCGAGTAGC
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 2 0.02
79 46 0.47
80 49 0.51
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGTGATAGTGACTAATTCCGAGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:67832958 original size:79 final size:79
Alignment explanation
Indices: 67832780--67832985 Score: 258
Period size: 79 Copynumber: 2.6 Consensus size: 79
67832770 TATTCAGATG
* * * *
67832780 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCGAAGACA
1 ATAATCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-TCCGGGCTAAGCCCGAAGACA
*
67832844 ATTGTGCGAGTTATT
65 ATTGTGCGAGTTACT
*
67832859 AT-ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATAAT-CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAG-CCCGAAGAC
* *
67832923 ATTTGTGCGAGTTCCT
64 AATTGTGCGAGTTACT
* *
67832939 ATAATCGGGCTATGT-CCGAAGGCATTCGAGCGAG-TAGCTATATCCGG
1 ATAATCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATCCGG
67832986 TTGAATTCCG
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 74 0.66
80 33 0.29
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
ATAATCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCGAAGACAA
TTGTGCGAGTTACT
Found at i:67832972 original size:39 final size:40
Alignment explanation
Indices: 67832784--67832985 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
67832774 CAGATGATAA
* * *
67832784 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
67832824 CCGGGCTAAG-CCCGAAGACAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
67832863 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
67832903 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAT-AT
* *
67832944 -CGGGCTATGT-CCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
67832982 CCGG
1 CCGG
67832986 TTGAATTCCG
Statistics
Matches: 143, Mismatches: 12, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.02
39 56 0.39
40 82 0.57
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:67834882 original size:38 final size:38
Alignment explanation
Indices: 67834839--67834914 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
67834829 TTCATCCTTT
67834839 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
67834877 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
67834915 GGAATTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:67836197 original size:40 final size:40
Alignment explanation
Indices: 67836103--67836247 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
67836093 TACTCGAATG
* *
67836103 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * * *
67836144 ACATCCAGACTAAGAT-CCGAAGGCATTTGTGGTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
67836184 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
67836224 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
67836248 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.69
41 25 0.29
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:67838663 original size:47 final size:49
Alignment explanation
Indices: 67838586--67838914 Score: 182
Period size: 49 Copynumber: 7.0 Consensus size: 49
67838576 GGGGTAAGAT
*
67838586 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACAT-T-AAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATATCAAA
* * * * ** * *
67838634 GTCGATGTCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATATCAAA
** ***
67838683 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATC-TATCGGT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCA-CATATCAAA
** * * **
67838732 GTTGATGGCATGTCCCAGACAAGTCTTACACTAAC-A-CACA-A-C-AA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATATCAAA
* * * * * * ** *
67838776 GCCGACGCCATGTCCCAGACAGGTCTTATACTAGCTTGTATATCCCGAA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATATCAAA
* * * * * * * *
67838825 GTCGATG-CATGTCCTAGACATGTCTTACACTAGC-A-CTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATATCAAA
* **
67838871 GCTGATG-CATGTCCCAGACATATCTTACACTGGCT--CACATATCA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATATCA
67838915 TCTAAATGTC
Statistics
Matches: 212, Mismatches: 59, Indels: 22
0.72 0.20 0.08
Matches are distributed among these distances:
44 28 0.13
45 1 0.00
46 43 0.20
47 20 0.09
48 43 0.20
49 77 0.36
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATATCAAA
Found at i:67838795 original size:93 final size:95
Alignment explanation
Indices: 67838586--67838905 Score: 249
Period size: 93 Copynumber: 3.4 Consensus size: 95
67838576 GGGGTAAGAT
* *
67838586 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAAAGTCGATGTCATGTCCCA
1 GCCGACGCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCGATGGCATGTCCCA
* * * *
67838651 AACAGGTCTTACACTGACTTTCATATATCAAG
65 AACAAGTCTTACACTAAC-TACACATATCAAG
* ** *** *
67838683 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTTGATGGCATGTCCC
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGATGGCATGTCCC
*
67838748 AGACAAGTCTTACACTAAC-ACACA-A-CAA-
64 AAACAAGTCTTACACTAACTACACATATCAAG
* * * * * * *
67838776 GCCGACGCCATGTCCCAGACAGGTCTTATACTAGCTTGTATATCCCGAAGTCGAT-GCATGTCCT
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACAT--CAAAGTCGATGGCATGTCCC
* * * * * * *
67838840 AGACATGTCTTACACTAGC-ACTCGTCTCAAT
64 AAACAAGTCTTACACTAACTACACATATCAAG
* * **
67838871 GCTGATG-CATGTCCCAGACATATCTTACACTGGCT
1 GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCT
67838906 CACATATCAT
Statistics
Matches: 180, Mismatches: 36, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
91 2 0.01
92 28 0.16
93 41 0.23
94 30 0.17
95 6 0.03
96 20 0.11
97 21 0.12
98 32 0.18
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (95 bp):
GCCGACGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCAAAGTCGATGGCATGTCCCAA
ACAAGTCTTACACTAACTACACATATCAAG
Found at i:67846144 original size:3 final size:3
Alignment explanation
Indices: 67846136--67846201 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
67846126 TATTGCTTAG
67846136 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
67846184 TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC
67846202 ATGAGAGTGG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:67849324 original size:13 final size:13
Alignment explanation
Indices: 67849303--67849373 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 13
67849293 AAATTTTTCC
67849303 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
67849316 AAAGTACTTCTCA
1 AAAGCACTTCTCA
* *
67849329 AAAGCACTTTTCC
1 AAAGCACTTCTCA
* * *
67849342 ACAGCACTTTTCC
1 AAAGCACTTCTCA
*
67849355 AAAGCACTTTTCA
1 AAAGCACTTCTCA
67849368 AAAGCA
1 AAAGCA
67849374 ATGAAGAACT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.37, C:0.28, G:0.08, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:67849332 original size:26 final size:26
Alignment explanation
Indices: 67849303--67849373 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
67849293 AAATTTTTCC
* *
67849303 AAAGCACTTCTCAAAAGTACTTCTCA
1 AAAGCACTTTTCAAAAGCACTTCTCA
* * * *
67849329 AAAGCACTTTTCCACAGCACTTTTCC
1 AAAGCACTTTTCAAAAGCACTTCTCA
67849355 AAAGCACTTTTCAAAAGCA
1 AAAGCACTTTTCAAAAGCA
67849374 ATGAAGAACT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.37, C:0.28, G:0.08, T:0.27
Consensus pattern (26 bp):
AAAGCACTTTTCAAAAGCACTTCTCA
Found at i:67849348 original size:39 final size:39
Alignment explanation
Indices: 67849297--67849373 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
67849287 ACACTTAAAT
*
67849297 TTTTCCAAAGCACTTCTCAAAAGTACTTCTCAAAAGCAC
1 TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGCAC
* * * *
67849336 TTTTCCACAGCACTTTTCCAAAGCACTTTTCAAAAGCA
1 TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGCA
67849374 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.30
Consensus pattern (39 bp):
TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGCAC
Found at i:67849491 original size:50 final size:50
Alignment explanation
Indices: 67849425--67849717 Score: 291
Period size: 50 Copynumber: 5.8 Consensus size: 50
67849415 TTAACTTTGA
* *
67849425 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * * * *
67849475 TCACGTGTGTATTACTAAGTGTAGGCTACTATGTGTACCAGATTGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * * ** * * ** *
67849525 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTT-TG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAAG
* * * *
67849575 ATCATGTGTGTAGTACTAAGTACAGGCTACTACATGTATCAGATGGTTAAG
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * * * * *
67849626 TCAAGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * *
67849676 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
67849718 GAGCTTCGGT
Statistics
Matches: 197, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
50 162 0.82
51 35 0.18
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
Found at i:67849663 original size:151 final size:151
Alignment explanation
Indices: 67849388--67849714 Score: 528
Period size: 151 Copynumber: 2.2 Consensus size: 151
67849378 AGAACTGGCC
* **
67849388 CTAAGTGCAGGCTACTATGCGTACCTGTTAACTTTGATCACGTGTGTAGTACTAAGTGTAGGCTA
1 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTACAGGCTA
* * * * * **
67849453 CTACGTGTATCAGATGGTTAAGTCACGTGTGTATTACTAAGTGTAGGCTACTATGTGTACCAGAT
66 CTACATGTATCAGATGGTTAAGTCAAGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGAT
* *
67849518 TGTTAGGTCGCATGTGTAGTA
131 TGATAGGTCACATGTGTAGTA
* *
67849539 CTAAGTGCAGGCTACTATGCATACCCGTTAACTTTGATCATGTGTGTAGTACTAAGTACAGGCTA
1 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTACAGGCTA
67849604 CTACATGTATCAGATGGTTAAGTCAAGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGAT
66 CTACATGTATCAGATGGTTAAGTCAAGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGAT
67849669 TGATAGGTCACATGTGTAGTA
131 TGATAGGTCACATGTGTAGTA
67849690 CTAAGTGCAGGCTACTATGCGTACC
1 CTAAGTGCAGGCTACTATGCGTACC
67849715 AGAGAGCTTC
Statistics
Matches: 161, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 161 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (151 bp):
CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTACAGGCTA
CTACATGTATCAGATGGTTAAGTCAAGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGAT
TGATAGGTCACATGTGTAGTA
Found at i:67849938 original size:16 final size:16
Alignment explanation
Indices: 67849917--67849948 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67849907 AGAATGGAGT
67849917 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
67849933 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
67849949 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:67861847 original size:21 final size:20
Alignment explanation
Indices: 67861814--67861852 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
67861804 TAGATATAGG
67861814 TTGAGTGAATTTGACATGTTT
1 TTGAGTGAATTTGA-ATGTTT
**
67861835 TTGAGTGTGTTTGAATGT
1 TTGAGTGAATTTGAATGT
67861853 AGTTTAGTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.49
Consensus pattern (20 bp):
TTGAGTGAATTTGAATGTTT
Found at i:67866237 original size:20 final size:20
Alignment explanation
Indices: 67866212--67866254 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
67866202 ATATAAGGAT
67866212 AAGGTATCGATACTTTGTGA
1 AAGGTATCGATACTTTGTGA
* * *
67866232 AAGGTATTGATATTTTGTTA
1 AAGGTATCGATACTTTGTGA
67866252 AAG
1 AAG
67866255 ATATTAATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40
Consensus pattern (20 bp):
AAGGTATCGATACTTTGTGA
Found at i:67866259 original size:20 final size:20
Alignment explanation
Indices: 67866220--67866259 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67866210 ATAAGGTATC
*
67866220 GATACTTTGTGAAAGGTATT
1 GATACTTTGTGAAAGATATT
* *
67866240 GATATTTTGTTAAAGATATT
1 GATACTTTGTGAAAGATATT
67866260 AATGCTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.45
Consensus pattern (20 bp):
GATACTTTGTGAAAGATATT
Found at i:67871039 original size:53 final size:54
Alignment explanation
Indices: 67870958--67871164 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
67870948 TTTCCTCTTT
* * * * *
67870958 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * **
67871011 GAACTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
** * * * * *
67871065 GTAACTCATAAATGCCATGTCTTGACATGGTTTTAAATGATTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
67871120 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCT
67871165 CATCTTACCA
Statistics
Matches: 127, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 38 0.30
55 42 0.33
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:67871083 original size:55 final size:54
Alignment explanation
Indices: 67870969--67871157 Score: 204
Period size: 55 Copynumber: 3.5 Consensus size: 54
67870959 AACTTACCAT
* * *
67870969 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * * *
67871022 TGCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATAAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * * *
67871077 TGCCATGTCTTGACATGGTTTTAAATGATTTCCTTT-CCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
67871131 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
67871158 ATATCCTCAT
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 32 0.28
55 40 0.35
56 5 0.04
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:67871407 original size:44 final size:44
Alignment explanation
Indices: 67871358--67871441 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
67871348 TCCTTAACTG
* *
67871358 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* *
67871402 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
67871442 GAGATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:67885137 original size:40 final size:40
Alignment explanation
Indices: 67885073--67885263 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
67885063 CAGATGATAA
* * *
67885073 CGAAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
67885113 CGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATAT-CCGGGCTAAGTCC
*
67885153 CGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
67885193 TGAAGGCATTTATGCGAGCTACTATATCCGGGCTAAATCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
67885233 CGAAGGCGTTTGAGCG-GGTAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGG
67885264 TTAAATCTCG
Statistics
Matches: 134, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.03
40 128 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:67888453 original size:54 final size:55
Alignment explanation
Indices: 67888310--67888463 Score: 195
Period size: 55 Copynumber: 2.8 Consensus size: 55
67888300 ATGTATCATG
* * **
67888310 AACTCACCAACGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGT
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAGT
* * * * *
67888365 AACTCATCAATGCAATGTCTTGACATGGTTTTACATGATTTCCTTGCCTTATAG-
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGT
*
67888419 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
67888464 ATCTTACCAA
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
54 39 0.47
55 42 0.51
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (55 bp):
AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGT
Found at i:67888495 original size:47 final size:47
Alignment explanation
Indices: 67888442--67888563 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
67888432 CATGCCTTGG
* *
67888442 CATGGTCTTACATGATATCCTTATCTTACCAAATACCGTGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATACCATGTTCCAAA
* * *
67888489 CATGGTCTTACATGGTATCCTTGTCATACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATACCATGTTCCAAA
67888536 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
67888564 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATACCATGTTCCAAA
Found at i:67888752 original size:44 final size:44
Alignment explanation
Indices: 67888703--67888786 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
67888693 TCCTTAACCG
* *
67888703 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCT
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCT
* *
67888747 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
67888787 GAAATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCT
Found at i:67892775 original size:15 final size:15
Alignment explanation
Indices: 67892757--67892813 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
67892747 CTCTTTGGAC
67892757 ATGATCTCTAATGAA
1 ATGATCTCTAATGAA
* * **
67892772 ATGATGTCTCATTTCA
1 ATGATCTCT-AATGAA
67892788 AT-ATCTCTAATGAA
1 ATGATCTCTAATGAA
*
67892802 ATGATGTCTAAT
1 ATGATCTCTAAT
67892814 TTCAATATTC
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
14 5 0.16
15 21 0.68
16 5 0.16
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (15 bp):
ATGATCTCTAATGAA
Found at i:67892796 original size:30 final size:30
Alignment explanation
Indices: 67892760--67892821 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
67892750 TTTGGACATG
*
67892760 ATCTCTAATGAAATGATGTCTCATTTCAAT
1 ATCTCTAATGAAATGATGTCTAATTTCAAT
67892790 ATCTCTAATGAAATGATGTCTAATTTCAAT
1 ATCTCTAATGAAATGATGTCTAATTTCAAT
67892820 AT
1 AT
67892822 TCTTGGTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (30 bp):
ATCTCTAATGAAATGATGTCTAATTTCAAT
Found at i:67894575 original size:29 final size:29
Alignment explanation
Indices: 67894540--67894613 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67894530 GTTGTGAGAT
* *
67894540 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67894569 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67894598 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67894614 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67896456 original size:32 final size:32
Alignment explanation
Indices: 67896419--67896483 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
67896409 TTATTATTTC
67896419 TTTAGTTAAAGTTAACAAAATGAGAATTTTTA
1 TTTAGTTAAAGTTAACAAAATGAGAATTTTTA
67896451 TTTAGTTAAAGTTAACAAAATGAGAATTTTTA
1 TTTAGTTAAAGTTAACAAAATGAGAATTTTTA
67896483 T
1 T
67896484 GTGTTTCATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.03, G:0.12, T:0.42
Consensus pattern (32 bp):
TTTAGTTAAAGTTAACAAAATGAGAATTTTTA
Found at i:67899061 original size:14 final size:13
Alignment explanation
Indices: 67899041--67899072 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
67899031 AATATTTGAC
67899041 TTGTTCTTAATTA
1 TTGTTCTTAATTA
67899054 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
67899068 TTGTT
1 TTGTT
67899073 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:67905570 original size:27 final size:26
Alignment explanation
Indices: 67905535--67905646 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
67905525 AACATGGCTG
* *
67905535 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
67905561 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
67905589 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
67905616 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
67905643 CCAG
1 CCAG
67905647 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67905627 original size:54 final size:54
Alignment explanation
Indices: 67905535--67905646 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
67905525 AACATGGCTG
* *
67905535 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
67905589 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
67905643 CCAG
1 CCAG
67905647 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Done.