Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 201 of 373
Found at i:67913334 original size:27 final size:26
Alignment explanation
Indices: 67913299--67913410 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
67913289 ATCATGGCTG
* *
67913299 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
67913325 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
67913353 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
67913380 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
67913407 CCAG
1 CCAG
67913411 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67913359 original size:54 final size:54
Alignment explanation
Indices: 67913299--67913410 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
67913289 ATCATGGCTG
* *
67913299 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
* ** *
67913353 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
67913407 CCAG
1 CCAG
67913411 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:67920849 original size:40 final size:40
Alignment explanation
Indices: 67920749--67920941 Score: 280
Period size: 40 Copynumber: 4.8 Consensus size: 40
67920739 CAGATGATAA
*
67920749 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
** * *
67920789 CCGGGGCTAAGTCCTAAAGGCATTTGTGCGAGTTACTAATT
1 CC-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
67920830 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
67920870 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* *
67920910 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67920942 AGCTATATCC
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 100 0.73
41 37 0.27
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:67928346 original size:13 final size:13
Alignment explanation
Indices: 67928328--67928352 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67928318 AACAGCAAAC
67928328 AGGAAAATAGAGA
1 AGGAAAATAGAGA
67928341 AGGAAAATAGAG
1 AGGAAAATAGAG
67928353 CGAGCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.32, T:0.08
Consensus pattern (13 bp):
AGGAAAATAGAGA
Found at i:67938450 original size:40 final size:40
Alignment explanation
Indices: 67938367--67938709 Score: 476
Period size: 40 Copynumber: 8.6 Consensus size: 40
67938357 TTGAATGCTG
* * * * * *
67938367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67938407 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67938447 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67938487 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67938527 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67938567 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67938607 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67938647 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67938686 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67938710 TGAACGAGGA
Statistics
Matches: 279, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.13
40 236 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67945880 original size:40 final size:40
Alignment explanation
Indices: 67945797--67946139 Score: 476
Period size: 40 Copynumber: 8.6 Consensus size: 40
67945787 TTGAATGCTG
* * * * * *
67945797 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67945837 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67945877 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67945917 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67945957 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67945997 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67946037 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67946077 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67946116 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67946140 TGAACGAGGA
Statistics
Matches: 279, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.13
40 236 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67950451 original size:27 final size:27
Alignment explanation
Indices: 67950388--67950487 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
67950378 CGTACCTAAA
*
67950388 CCCTCATGTGATAAGATGACGA-TTTT
1 CCCTCATGTGATAAAATGACGATTTTT
67950414 CCCTCATGTGATAAAATGACGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTT
* *
67950441 CCCTCAGGTGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTT
*
67950468 CCCTTATGTGATAAAATGAC
1 CCCTCATGTGATAAAATGAC
67950488 TGAAATACCC
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 21 0.31
27 47 0.69
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACGATTTTT
Found at i:67962843 original size:37 final size:36
Alignment explanation
Indices: 67962784--67962857 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
67962774 ACATGTCAAC
*
67962784 ATTTAATTAATTTTTTAAAATTTTAAAAAATTATAAA
1 ATTTAAATAATTTTTTAAAATTTT-AAAAATTATAAA
* * *
67962821 ATTTAAATAATCTTTTT-GAATTTTTAAAATTTTAAA
1 ATTTAAATAAT-TTTTTAAAATTTTAAAAATTATAAA
67962857 A
1 A
67962858 ATAATTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 11 0.34
37 16 0.50
38 5 0.16
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (36 bp):
ATTTAAATAATTTTTTAAAATTTTAAAAATTATAAA
Found at i:67963729 original size:13 final size:13
Alignment explanation
Indices: 67963711--67963771 Score: 79
Period size: 13 Copynumber: 4.7 Consensus size: 13
67963701 CTTAAATTTT
67963711 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
67963724 TCAAAAGCACTTTT
1 TCAAAAGCAC-TTC
*
67963738 TC-ACAGCACTTC
1 TCAAAAGCACTTC
*
67963750 TCAAAAGCACTTT
1 TCAAAAGCACTTC
67963763 TCAAAAGCA
1 TCAAAAGCA
67963772 TTGCCAAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
12 4 0.10
13 33 0.80
14 4 0.10
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.26
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:67963745 original size:26 final size:27
Alignment explanation
Indices: 67963707--67963771 Score: 107
Period size: 26 Copynumber: 2.5 Consensus size: 27
67963697 AACACTTAAA
67963707 TTTTTCAAAAGCACTTCTCAAAAGCAC
1 TTTTTCAAAAGCACTTCTCAAAAGCAC
*
67963734 TTTTTC-ACAGCACTTCTCAAAAGCAC
1 TTTTTCAAAAGCACTTCTCAAAAGCAC
67963760 -TTTTCAAAAGCA
1 TTTTTCAAAAGCA
67963772 TTGCCAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
25 5 0.14
26 24 0.69
27 6 0.17
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:67965379 original size:20 final size:20
Alignment explanation
Indices: 67965351--67965399 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
67965341 TTTAATAATA
* *
67965351 ATAATAAATATTTATTATTTT
1 ATAA-AAATATTTATTAATTG
*
67965372 ATAAAAATATTTTTTAATTG
1 ATAAAAATATTTATTAATTG
67965392 ATAAAAAT
1 ATAAAAAT
67965400 TATATTTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATAAAAATATTTATTAATTG
Found at i:67966290 original size:13 final size:13
Alignment explanation
Indices: 67966272--67966296 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67966262 GAGGTTCTAT
67966272 TTTTTATTTTTTA
1 TTTTTATTTTTTA
67966285 TTTTTATTTTTT
1 TTTTTATTTTTT
67966297 GGGTTTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:67987813 original size:14 final size:16
Alignment explanation
Indices: 67987783--67987820 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
67987773 TAATTTTTAT
67987783 ATTGAATTTTGAATTA
1 ATTGAATTTTGAATTA
67987799 A-TGAATTTT-AATTA
1 ATTGAATTTTGAATTA
67987813 ATTGAATT
1 ATTGAATT
67987821 AGTGGTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 14 0.67
16 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (16 bp):
ATTGAATTTTGAATTA
Found at i:68002387 original size:27 final size:27
Alignment explanation
Indices: 68002357--68002409 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
68002347 CCTGGTGGAC
* * *
68002357 TACCCTGTGTTTATTGTCTCGACGGAT
1 TACCCCGTGTTTACTATCTCGACGGAT
68002384 TACCCCGTGTTTACTATCTCGACGGA
1 TACCCCGTGTTTACTATCTCGACGGA
68002410 CTCTCTATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (27 bp):
TACCCCGTGTTTACTATCTCGACGGAT
Found at i:68003959 original size:40 final size:40
Alignment explanation
Indices: 68003892--68004045 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
68003882 ATTGTCTAAG
* ****
68003892 AATTTACCAAAATTTATAATAAGTTACCAAAATAT-TTAA
1 AATTTACCAAAATTTCTAAGCTTTTACCAAAATATCTTAA
* *
68003931 GGATTTACCAAAATTTCTAAGCTTTTACCAAAAT-TCCTTGA
1 -AATTTACCAAAATTTCTAAGCTTTTACCAAAATAT-CTTAA
* ** * *
68003972 AAGTTAATAAAATTTTGTAAGCTTTTACCAAAATTTCTTAA
1 AATTTACCAAAA-TTTCTAAGCTTTTACCAAAATATCTTAA
* *
68004013 AATTTATCAAAATTTGTAAGCTTTTACCAAAAT
1 AATTTACCAAAATTTCTAAGCTTTTACCAAAAT
68004046 TATATTTTTA
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 56 0.60
41 36 0.38
42 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (40 bp):
AATTTACCAAAATTTCTAAGCTTTTACCAAAATATCTTAA
Found at i:68004038 original size:20 final size:20
Alignment explanation
Indices: 68003915--68004046 Score: 85
Period size: 20 Copynumber: 6.5 Consensus size: 20
68003905 TTATAATAAG
**
68003915 TTACCAAAATATT-TAAGGAT
1 TTACCAAAAT-TTGTAAGCTT
*
68003935 TTACCAAAATTTCTAAGCTT
1 TTACCAAAATTTGTAAGCTT
*
68003955 TTACCAAAATTCCTTGAAAG-TT
1 TTACCAAAA-T--TTGTAAGCTT
* *
68003977 AATA--AAATTTTGTAAGCTT
1 -TTACCAAAATTTGTAAGCTT
* **
68003996 TTACCAAAATTTCTTAA-AAT
1 TTACCAAAATTT-GTAAGCTT
*
68004016 TTATCAAAATTTGTAAGCTT
1 TTACCAAAATTTGTAAGCTT
68004036 TTACCAAAATT
1 TTACCAAAATT
68004047 ATATTTTTAA
Statistics
Matches: 85, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
18 8 0.09
19 7 0.08
20 54 0.64
21 7 0.08
22 2 0.02
23 7 0.08
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (20 bp):
TTACCAAAATTTGTAAGCTT
Found at i:68004046 original size:40 final size:40
Alignment explanation
Indices: 68003915--68004046 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
68003905 TTATAATAAG
* * * *
68003915 TTACCAAAATAT-TTAAGGATTTACCAAAATTTCTAAGCTT
1 TTACCAAAATTTCTTAA-AATTTATCAAAATTTGTAAGCTT
* * *
68003955 TTACCAAAATTCCTTGAAAGTTAAT-AAAATTTTGTAAGCTT
1 TTACCAAAATTTCTT-AAAATTTATCAAAA-TTTGTAAGCTT
68003996 TTACCAAAATTTCTTAAAATTTATCAAAATTTGTAAGCTT
1 TTACCAAAATTTCTTAAAATTTATCAAAATTTGTAAGCTT
68004036 TTACCAAAATT
1 TTACCAAAATT
68004047 ATATTTTTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
40 43 0.55
41 33 0.42
42 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (40 bp):
TTACCAAAATTTCTTAAAATTTATCAAAATTTGTAAGCTT
Found at i:68004082 original size:20 final size:20
Alignment explanation
Indices: 68003879--68004084 Score: 68
Period size: 20 Copynumber: 9.9 Consensus size: 20
68003869 AAATAATTTA
68003879 AAAATTGTCTAAGA-ATTTACC
1 AAAATT-TCTAA-ATATTTACC
* *
68003900 AAAATTTAT-AATAAGTTACC
1 AAAATTTCTAAAT-ATTTACC
**
68003920 AAAATATT-TAAGGATTTACC
1 AAAAT-TTCTAAATATTTACC
*
68003940 AAAATTTCTAAGCT-TTTACC
1 AAAATTTCTAA-ATATTTACC
* * * **
68003960 AAAATTCCTTGAA-AGTTAAT
1 AAAATTTC-TAAATATTTACC
* *
68003980 AAAATTTTGTAAGCT-TTTACC
1 AAAA-TTTCTAA-ATATTTACC
*
68004001 AAAATTTCTTAAA-ATTTATC
1 AAAATTTC-TAAATATTTACC
* *
68004021 AAAATTTGTAAGCT-TTTACC
1 AAAATTTCTAA-ATATTTACC
* *
68004041 AAAATTATATTTTTAATGATTTACC
1 -AAA--AT-TTCTAAAT-ATTTACC
68004066 AAAATTTCTAAATATTTAC
1 AAAATTTCTAAATATTTAC
68004085 AATATTTTTG
Statistics
Matches: 133, Mismatches: 31, Indels: 43
0.64 0.15 0.21
Matches are distributed among these distances:
18 1 0.01
19 6 0.05
20 76 0.57
21 32 0.24
22 2 0.02
23 3 0.02
24 7 0.05
25 6 0.05
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (20 bp):
AAAATTTCTAAATATTTACC
Found at i:68004109 original size:20 final size:19
Alignment explanation
Indices: 68004047--68004153 Score: 92
Period size: 20 Copynumber: 5.4 Consensus size: 19
68004037 TACCAAAATT
68004047 ATATTTTTAATGATTTACCA
1 ATATTTTTAA-GATTTACCA
* * *
68004067 AAATTTCTAAATATTTA-CA
1 ATATTT-TTAAGATTTACCA
68004086 ATATTTTTGAA-ACTTTACCA
1 ATATTTTT-AAGA-TTTACCA
* *
68004106 ATATATTTAATGATTTATCA
1 ATATTTTTAA-GATTTACCA
*
68004126 AAATTTTTAAGGATTTACCA
1 ATATTTTTAA-GATTTACCA
68004146 ATATTTTT
1 ATATTTTT
68004154 GAGACTTTGC
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.03
19 15 0.22
20 48 0.70
21 4 0.06
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (19 bp):
ATATTTTTAAGATTTACCA
Found at i:68004122 original size:59 final size:60
Alignment explanation
Indices: 68003915--68004161 Score: 173
Period size: 61 Copynumber: 4.0 Consensus size: 60
68003905 TTATAATAAG
* * * * * *
68003915 TTACCAAAATATTTAAGGATTTACCAAAATTTCT-AAGCTTTTACCAAAATTCCTTGAAA-G
1 TTACCAATATATTTAATGATTTACCAAAATTTCTAAAG-ATTTACCAATATT-TTTGAAACT
** * * * * * * *
68003975 TTAATAAAATTTTGTAA-GCTTTTACCAAAATTTCTTAAA-ATTTATCAAAATTTGT-AAGCTT
1 TTACCAATATATT-TAATG-ATTTACCAAAATTTC-TAAAGATTTACCAATATTTTTGAAAC-T
*
68004036 TTACCAAAATTATATTTTTAATGATTTACCAAAATTTCTAAATATTTA-CAATATTTTTGAAACT
1 TTACC--AA-TATA--TTTAATGATTTACCAAAATTTCTAAAGATTTACCAATATTTTTGAAACT
* * * *
68004100 TTACCAATATATTTAATGATTTATCAAAATTTTTAAGGATTTACCAATATTTTTGAGACT
1 TTACCAATATATTTAATGATTTACCAAAATTTCTAAAGATTTACCAATATTTTTGAAACT
68004160 TT
1 TT
68004162 GCTAATTAAT
Statistics
Matches: 149, Mismatches: 23, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
59 30 0.20
60 29 0.19
61 35 0.23
62 3 0.02
63 4 0.03
64 20 0.13
65 25 0.17
66 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (60 bp):
TTACCAATATATTTAATGATTTACCAAAATTTCTAAAGATTTACCAATATTTTTGAAACT
Found at i:68004143 original size:40 final size:38
Alignment explanation
Indices: 68004049--68004151 Score: 104
Period size: 39 Copynumber: 2.6 Consensus size: 38
68004039 CCAAAATTAT
* *
68004049 ATTTTTAATGATTTACCAAAATTTCTAAATATTTACAAT
1 ATTTTTAA-GATTTACCAATATTTCTAAATATTTACAAA
68004088 ATTTTTGAA-ACTTTACCAATATATT-T-AATGATTTATCAAA
1 ATTTTT-AAGA-TTTACCAATAT-TTCTAAAT-ATTTA-CAAA
68004128 ATTTTTAAGGATTTACCAATATTT
1 ATTTTTAA-GATTTACCAATATTT
68004152 TTGAGACTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
38 4 0.07
39 26 0.47
40 24 0.44
41 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.47
Consensus pattern (38 bp):
ATTTTTAAGATTTACCAATATTTCTAAATATTTACAAA
Found at i:68004182 original size:60 final size:59
Alignment explanation
Indices: 68004059--68004183 Score: 135
Period size: 60 Copynumber: 2.1 Consensus size: 59
68004049 ATTTTTAATG
* * * **
68004059 ATTTACCAAAATTTCTAAATATTTACAATATTTTTGAAACTTTACCAATATATTTAATG
1 ATTTATCAAAATTTCTAAAGATTTACAATATTTTTGAAACTTTACCAATATATCTAACC
* * * * *
68004118 ATTTATCAAAATTTTTAAGGATTTACCAATATTTTTGAGACTTTGCTAAT-TAATCTAACC
1 ATTTATCAAAATTTCTAAAGATTTA-CAATATTTTTGAAACTTTACCAATAT-ATCTAACC
68004178 ATTTAT
1 ATTTAT
68004184 TGAATTTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
59 22 0.41
60 32 0.59
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.45
Consensus pattern (59 bp):
ATTTATCAAAATTTCTAAAGATTTACAATATTTTTGAAACTTTACCAATATATCTAACC
Found at i:68004249 original size:21 final size:21
Alignment explanation
Indices: 68004225--68004292 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
68004215 AGACTTTACG
68004225 AAATTATCAAAAGATTTACCA
1 AAATTATCAAAAGATTTACCA
* *
68004246 AAATTGT-TAAAGATTTACCAA
1 AAATTATCAAAAGATTTACC-A
* *
68004267 AAATTAACAAAAGCTTTTACCA
1 AAATTATCAAAAG-ATTTACCA
68004289 AAAT
1 AAAT
68004293 ATTTGAGGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 11 0.29
21 12 0.32
22 9 0.24
23 6 0.16
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.29
Consensus pattern (21 bp):
AAATTATCAAAAGATTTACCA
Found at i:68004343 original size:20 final size:20
Alignment explanation
Indices: 68004300--68004343 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
68004290 AATATTTGAG
* * * *
68004300 GATTTATCAATATTTCTAAT
1 GATTGATCAAAATTTCCAAA
68004320 GATTGATCAAAATTTCCAAA
1 GATTGATCAAAATTTCCAAA
68004340 GATT
1 GATT
68004344 TCGTTTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (20 bp):
GATTGATCAAAATTTCCAAA
Found at i:68004503 original size:20 final size:20
Alignment explanation
Indices: 68004480--68004542 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
68004470 TTCCAAGCCC
*
68004480 TTACCAAAATTTCTGAGACT
1 TTACCAATATTTCTGAGACT
* * * *
68004500 TTACCAATATATCTAACAAT
1 TTACCAATATTTCTGAGACT
68004520 TTACCAATATTTCTGAGACT
1 TTACCAATATTTCTGAGACT
68004540 TTA
1 TTA
68004543 AGCGTCCCAT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (20 bp):
TTACCAATATTTCTGAGACT
Found at i:68004610 original size:40 final size:40
Alignment explanation
Indices: 68004575--68004725 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
68004565 CATCTAAGCC
* *
68004575 TTTACCAATATTTTTGAG-ACTTTAACAATATATCTAATGA
1 TTTACCAATATTTTTAAGCA-TTTAACAAAATATCTAATGA
* *
68004615 TTTACCAATATTTTTAAGCATTTATCAAAATATCTAACGA
1 TTTACCAATATTTTTAAGCATTTAACAAAATATCTAATGA
* * * * * * *
68004655 TTTACCAAAATCTCTAA-CGATTTATCAGAATATTTAAGGA
1 TTTACCAATATTTTTAAGC-ATTTAACAAAATATCTAATGA
*
68004695 TTTACCAATATTTTTAAGCATTTACCAAAAT
1 TTTACCAATATTTTTAAGCATTTAACAAAAT
68004726 TTCTTAAAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 90 0.97
41 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.40
Consensus pattern (40 bp):
TTTACCAATATTTTTAAGCATTTAACAAAATATCTAATGA
Found at i:68004710 original size:20 final size:20
Alignment explanation
Indices: 68004575--68004732 Score: 104
Period size: 20 Copynumber: 7.8 Consensus size: 20
68004565 CATCTAAGCC
*
68004575 TTTACCAATATTTTTGA-GA
1 TTTACCAATATTTTTAAGGA
* * * *
68004594 CTTTAACAATATATCTAATGA
1 -TTTACCAATATTTTTAAGGA
*
68004615 TTTACCAATATTTTTAAGCA
1 TTTACCAATATTTTTAAGGA
* * * * *
68004635 TTTATCAAAATATCTAACGA
1 TTTACCAATATTTTTAAGGA
* * * *
68004655 TTTACCAAAATCTCTAACGA
1 TTTACCAATATTTTTAAGGA
* *
68004675 TTTATCAGA-ATATTTAAGGA
1 TTTACCA-ATATTTTTAAGGA
*
68004695 TTTACCAATATTTTTAAGCA
1 TTTACCAATATTTTTAAGGA
*
68004715 TTTACCAAAATTTCTTAA
1 TTTACCAATATTT-TTAA
68004733 AAAGTAACAA
Statistics
Matches: 109, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
19 1 0.01
20 101 0.93
21 7 0.06
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (20 bp):
TTTACCAATATTTTTAAGGA
Found at i:68004820 original size:20 final size:21
Alignment explanation
Indices: 68004791--68004832 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68004781 TATTTATAAC
*
68004791 AATTTGTC-AAATTATTAAAG
1 AATTTATCAAAATTATTAAAG
*
68004811 AATTTATCAAAATTTTTAAAG
1 AATTTATCAAAATTATTAAAG
68004832 A
1 A
68004833 CTTGCCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTTATCAAAATTATTAAAG
Found at i:68004929 original size:20 final size:19
Alignment explanation
Indices: 68004906--68004962 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
68004896 AACAAATTTG
68004906 TAAGACTTTACCAAAATGTC
1 TAAGA-TTTACCAAAATGTC
* * *
68004926 TAAGAATTAACCAATATTTC
1 TAAG-ATTTACCAAAATGTC
*
68004946 TAAGGATTTACCTAAAT
1 TAA-GATTTACCAAAAT
68004963 ATCCAAGGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (19 bp):
TAAGATTTACCAAAATGTC
Found at i:68005006 original size:30 final size:30
Alignment explanation
Indices: 68004972--68005033 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
68004962 TATCCAAGGA
* * *
68004972 TTATCAGAATACCAAAGAGTTTACCAATAT
1 TTATCAAAATACCAAAGAATTTAACAATAT
* *
68005002 TTATCAAAATATCTAAGAATTTAACAATAT
1 TTATCAAAATACCAAAGAATTTAACAATAT
68005032 TT
1 TT
68005034 CTAATTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (30 bp):
TTATCAAAATACCAAAGAATTTAACAATAT
Found at i:68007115 original size:118 final size:118
Alignment explanation
Indices: 68006881--68007116 Score: 339
Period size: 118 Copynumber: 2.0 Consensus size: 118
68006871 CAGGGACTAA
* * *
68006881 GGGATGGAGAAGGTTGTCTCATCTAATATTATGTGATTTTGGGATTAAGTCTAAATGATTCTGTA
1 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTAAGTCTAAATGATTCTGTA
* * * *
68006946 TTATTGCTTATTAATAGATGACGGGTAGATTTATATATCTTCAGAACTGGAAT
66 TTATTGCTTATTAATAAATAACGAGAAGATTTATATATCTTCAGAACTGGAAT
* ** *
68006999 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTGAGTCTACCTGATTTTGTA
1 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTAAGTCTAAATGATTCTGTA
* *
68007064 TTCATTGCTTATTATTAAATAACGAGAAGATTTGTATATCTTCAGAA-TGGAAT
66 TT-ATTGCTTATTAATAAATAACGAGAAGATTTATATATCTTCAGAACTGGAAT
68007117 TTATTCTGTC
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
118 66 0.63
119 38 0.37
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (118 bp):
GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATTAAGTCTAAATGATTCTGTA
TTATTGCTTATTAATAAATAACGAGAAGATTTATATATCTTCAGAACTGGAAT
Found at i:68012370 original size:34 final size:34
Alignment explanation
Indices: 68012332--68012457 Score: 148
Period size: 34 Copynumber: 3.6 Consensus size: 34
68012322 AAATAAATCA
68012332 AGGTTTAGAGTTTTTTTAAAAAATTAATTAAATT
1 AGGTTTAGAGTTTTTTTAAAAAATTAATTAAATT
* * **
68012366 AGGTTTTGGGGGTTTTTAAATAAATTAATTAAATT
1 AGGTTTAGAGTTTTTTTAAA-AAATTAATTAAATT
*
68012401 AGGGTTTAGAG--TTTTTAAGAAAATTAATTTAATT
1 A-GGTTTAGAGTTTTTTTAA-AAAATTAATTAAATT
*
68012435 AAGGTTTAGATTTTTTTTAAAAA
1 -AGGTTTAGAGTTTTTTTAAAAA
68012458 TAATTGTGTT
Statistics
Matches: 78, Mismatches: 8, Indels: 11
0.80 0.08 0.11
Matches are distributed among these distances:
34 44 0.56
35 20 0.26
36 14 0.18
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (34 bp):
AGGTTTAGAGTTTTTTTAAAAAATTAATTAAATT
Found at i:68012702 original size:126 final size:126
Alignment explanation
Indices: 68012548--68013095 Score: 701
Period size: 125 Copynumber: 4.4 Consensus size: 126
68012538 TTGTTTTTTC
* * * * * *
68012548 TTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAGGACGGTTCTGAAAAGATAATGTCAAAAAC
1 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAAC
* * * *
68012613 GATTCAAGCAAGATGTACTGTCAGCAAAATTACTGAAAAAGGCTCCCACATGGACGCTCTT
66 GATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* * *
68012674 TTTCTATAGTAGTTCCTGAAAAAATAATTTTCAGAAGACGATTCT-AAAAAGATAGTGTCAAAAA
1 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAA-ATAGTGTCAAAAA
* * *
68012738 TGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
65 CGATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* * ** * *
68012800 TTTTTACAGTAGTTCTTG-AAAAATAATTTTGAGAAGACAATTCTAAAAAAATAGTGCCAAAAAC
1 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAAC
* * * * *
68012864 GTTTCAAGCAGGATGTACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTAGACACT-TT
66 GATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* *** *
68012924 TTTCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAGTTTGTTATGAAAAAATAGTGTCAAAAAC
1 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAAC
* * * * *
68012989 -ACTTTAAGCAAGATGCACTATCAATAAAATTACTGAAAAAAACTCTCACGTGGACGCTCTT
66 GA-TTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
*
68013050 TTTCTACAGTAGTTCCT-AAAAAATAATTTTGTGAAGACGGTTCTGA
1 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGA
68013096 TCCCACGTGA
Statistics
Matches: 364, Mismatches: 53, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
124 18 0.05
125 200 0.55
126 146 0.40
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (126 bp):
TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAAC
GATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
Found at i:68016682 original size:18 final size:18
Alignment explanation
Indices: 68016661--68016696 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
68016651 AAAAGGAAAT
*
68016661 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
68016679 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
68016697 GTACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:68018201 original size:26 final size:24
Alignment explanation
Indices: 68018159--68018211 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
68018149 AATTGTTATA
**
68018159 AAAATTATAAAATAAAAATTAATT
1 AAAATTATAAAATAAAAAAAAATT
*
68018183 AAAATTAGTTAAATGAAAAAAAAATT
1 AAAATTA-TAAAAT-AAAAAAAAATT
68018209 AAA
1 AAA
68018212 TAATATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.29
25 5 0.21
26 12 0.50
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (24 bp):
AAAATTATAAAATAAAAAAAAATT
Found at i:68018765 original size:20 final size:19
Alignment explanation
Indices: 68018736--68018781 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
68018726 CGAAAAATAA
68018736 TTTTTGGAAAATGATTTA-T
1 TTTTTGG-AAATGATTTACT
68018755 TTTTCTGGAAATGATTTACT
1 TTTT-TGGAAATGATTTACT
68018775 TTTTTGG
1 TTTTTGG
68018782 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.24, C:0.04, G:0.17, T:0.54
Consensus pattern (19 bp):
TTTTTGGAAATGATTTACT
Found at i:68025625 original size:26 final size:24
Alignment explanation
Indices: 68025565--68025632 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 24
68025555 TTATGTATTA
*
68025565 TTATATTTAATT-TTTTAAAATATT
1 TTATA-TTAATTATTTTAAAATAAT
68025589 TTATATT-ATTAGTTTTACAAATAAT
1 TTATATTAATTA-TTTTA-AAATAAT
68025614 TTATATTAATTA-TTTAAAA
1 TTATATTAATTATTTTAAAA
68025633 GGTGTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
22 3 0.08
23 5 0.13
24 14 0.36
25 13 0.33
26 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (24 bp):
TTATATTAATTATTTTAAAATAAT
Found at i:68025938 original size:20 final size:19
Alignment explanation
Indices: 68025901--68025956 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
68025891 CTATCATCTT
68025901 CAAAAAT-TAATAATATTATTA
1 CAAAAATGTAA-AA-ATTA-TA
68025922 CAAAAATGTAAAAATTATA
1 CAAAAATGTAAAAATTATA
68025941 -AAAAATTGTTAAAAAT
1 CAAAAA-TG-TAAAAAT
68025957 AAATATTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 5 0.16
19 4 0.12
20 11 0.34
21 9 0.28
22 3 0.09
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (19 bp):
CAAAAATGTAAAAATTATA
Found at i:68028509 original size:21 final size:20
Alignment explanation
Indices: 68028483--68028521 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
68028473 ATGTATTTTG
*
68028483 ATGTTTGGTGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
68028504 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
68028522 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:68029139 original size:48 final size:49
Alignment explanation
Indices: 68029068--68029170 Score: 172
Period size: 48 Copynumber: 2.1 Consensus size: 49
68029058 ATGTCATTAG
68029068 GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTC-GGGTGC
1 GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGGTGC
* * *
68029116 GAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGGTGT
1 GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGGTGC
68029165 GAGCTT
1 GAGCTT
68029171 TCGAATTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
48 40 0.78
49 11 0.22
ACGTcount: A:0.16, C:0.19, G:0.32, T:0.33
Consensus pattern (49 bp):
GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGGTGC
Found at i:68029240 original size:85 final size:88
Alignment explanation
Indices: 68029095--68029427 Score: 350
Period size: 96 Copynumber: 3.6 Consensus size: 88
68029085 CTTCGGGACA
*
68029095 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGG
1 TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTC-G
*
68029160 GGTGTGAGCTT-TCGA-ATTC-G-
65 GGTGCGAGCTTATCGATATTCGGC
*
68029180 TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGG
1 TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGG
* *
68029245 GTGCGAGCTTCATTGATTTGGCTTCGGGCC
66 GTGCGAGCTT-ATCGA--T--ATTC-GG-C
* * **
68029275 ATGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCTGGCCGTGATATTGGCACTTTA
1 -TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCG
* * *
68029340 GGTGCTAGCTTCATTGATTTGGCTTCAGGCC
65 GGTGCGAGCTT-ATCGA--T--ATTC-GG-C
* * *
68029371 ATGATATTGGCACTTCGGGTGCAAGCTTCATTGATTTGGCTTCAGGCCATGATATTG
1 -TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTG
68029428 ATACCTAGGG
Statistics
Matches: 220, Mismatches: 16, Indels: 13
0.88 0.06 0.05
Matches are distributed among these distances:
84 11 0.05
85 61 0.28
86 3 0.01
91 3 0.01
93 1 0.00
96 141 0.64
ACGTcount: A:0.16, C:0.20, G:0.29, T:0.35
Consensus pattern (88 bp):
TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGG
GTGCGAGCTTATCGATATTCGGC
Found at i:68029440 original size:48 final size:48
Alignment explanation
Indices: 68029180--68029427 Score: 397
Period size: 48 Copynumber: 5.2 Consensus size: 48
68029170 TTCGAATTCG
* *
68029180 TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCAGGCCA
* *
68029228 TGATATTAGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCAGGCCA
* * *
68029276 TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCTGGCCG
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCAGGCCA
** *
68029324 TGATATTGGCACTTTAGGTGCTAGCTTCATTGATTTGGCTTCAGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCAGGCCA
*
68029372 TGATATTGGCACTTCGGGTGCAAGCTTCATTGATTTGGCTTCAGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCAGGCCA
68029420 TGATATTG
1 TGATATTG
68029428 ATACCTAGGG
Statistics
Matches: 186, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 186 1.00
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.35
Consensus pattern (48 bp):
TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCAGGCCA
Found at i:68030080 original size:27 final size:25
Alignment explanation
Indices: 68030027--68030082 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 25
68030017 ATGTGATTGA
* *
68030027 GGTTGGTTTTGTGATGTTTATTAAT
1 GGTTGGTTTTGTGATGTTAAATAAT
*
68030052 GGTTGGTATTTGTGGATGTTAAATGAT
1 GGTTGGT-TTTGT-GATGTTAAATAAT
68030079 GGTT
1 GGTT
68030083 ATTAGAGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 7 0.27
26 5 0.19
27 14 0.54
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (25 bp):
GGTTGGTTTTGTGATGTTAAATAAT
Found at i:68031955 original size:22 final size:21
Alignment explanation
Indices: 68031907--68031955 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
68031897 TAGCGCGTTA
**
68031907 TATTTCAATCCTTTATTTATT
1 TATTTCAATCCTTTATGAATT
*
68031928 TAATTTCAATCTTTTATGAACTT
1 T-ATTTCAATCCTTTATGAA-TT
68031951 TATTT
1 TATTT
68031956 ATTTATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.27, C:0.12, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTTCAATCCTTTATGAATT
Found at i:68032169 original size:13 final size:13
Alignment explanation
Indices: 68032151--68032218 Score: 61
Period size: 13 Copynumber: 5.3 Consensus size: 13
68032141 AGCATTTAAA
68032151 ATTTATATATTTT
1 ATTTATATATTTT
68032164 ATTTATATATTTT
1 ATTTATATATTTT
* *
68032177 ATTT-TATCAATCT
1 ATTTATAT-ATTTT
*
68032190 A-CTATATCA-TTT
1 ATTTATAT-ATTTT
*
68032202 ATTTATACATTTT
1 ATTTATATATTTT
68032215 ATTT
1 ATTT
68032219 TATTTTATCC
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
12 8 0.18
13 37 0.82
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTATATATTTT
Found at i:68033468 original size:46 final size:46
Alignment explanation
Indices: 68033401--68033526 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
68033391 CTTCACATAA
* * * * * *
68033401 TGATGCAATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* *
68033447 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
* *
68033494 CGATGTCATATCCCAGATATGGTCTTATACGAA
1 TGATGCCATATCCCAGATATGGTCTTATACGAA
68033527 AATCACTTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 28 0.41
47 40 0.59
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (46 bp):
TGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:68033584 original size:31 final size:30
Alignment explanation
Indices: 68033560--68033726 Score: 262
Period size: 31 Copynumber: 5.5 Consensus size: 30
68033550 TAGCTGAAGG
* * *
68033560 TACCACTATTCACTGGTCAGGTAGCCGGATC
1 TACCACTTTTCACTGATCAGGTAGCC-GAGC
*
68033591 TACCACTTTTCACTGATCAGGTAACCGGAGC
1 TACCACTTTTCACTGATCAGGTAGCC-GAGC
*
68033622 TACCACTTTTCACTGATCAGGTAGCAGAGC
1 TACCACTTTTCACTGATCAGGTAGCCGAGC
68033652 TACCACTTTTCACTGATCAGGTAGCCAGAGC
1 TACCACTTTTCACTGATCAGGTAGCC-GAGC
68033683 TACCACTTTTCACTGATCAGGTAGCCGAGC
1 TACCACTTTTCACTGATCAGGTAGCCGAGC
68033713 TACCACTTTTCACT
1 TACCACTTTTCACT
68033727 TGTCATTTAT
Statistics
Matches: 128, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
30 47 0.37
31 81 0.63
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (30 bp):
TACCACTTTTCACTGATCAGGTAGCCGAGC
Found at i:68033673 original size:61 final size:61
Alignment explanation
Indices: 68033560--68033726 Score: 262
Period size: 61 Copynumber: 2.7 Consensus size: 61
68033550 TAGCTGAAGG
* * * * *
68033560 TACCACTATTCACTGGTCAGGTAGCCGGATCTACCACTTTTCACTGATCAGGTAACCGGAGC
1 TACCACTTTTCACTGATCAGGTAG-CAGAGCTACCACTTTTCACTGATCAGGTAACCAGAGC
*
68033622 TACCACTTTTCACTGATCAGGTAGCAGAGCTACCACTTTTCACTGATCAGGTAGCCAGAGC
1 TACCACTTTTCACTGATCAGGTAGCAGAGCTACCACTTTTCACTGATCAGGTAACCAGAGC
*
68033683 TACCACTTTTCACTGATCAGGTAGCCGAGCTACCACTTTTCACT
1 TACCACTTTTCACTGATCAGGTAGCAGAGCTACCACTTTTCACT
68033727 TGTCATTTAT
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 76 0.78
62 22 0.22
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (61 bp):
TACCACTTTTCACTGATCAGGTAGCAGAGCTACCACTTTTCACTGATCAGGTAACCAGAGC
Found at i:68037036 original size:31 final size:29
Alignment explanation
Indices: 68037001--68037073 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
68036991 ACGCTTAGTG
*
68037001 ACTAAAATGTTACAATACGATAACATAAGTA
1 ACTAAAATGTAACAATAC-A-AACATAAGTA
* * *
68037032 ACTAAAATGTAACATTTCAAATATAAGTA
1 ACTAAAATGTAACAATACAAACATAAGTA
68037061 ACTAAAATGTAAC
1 ACTAAAATGTAAC
68037074 CCAAGACAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 22 0.58
30 1 0.03
31 15 0.39
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.27
Consensus pattern (29 bp):
ACTAAAATGTAACAATACAAACATAAGTA
Found at i:68037165 original size:22 final size:22
Alignment explanation
Indices: 68037121--68037166 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
68037111 CCTAAAAAAA
* *
68037121 TTACAATTTTTTTTTATAATTT
1 TTACAATTTTTTGTTACAATTT
*
68037143 TTACAATTTTTTGTTACATTTT
1 TTACAATTTTTTGTTACAATTT
68037165 TT
1 TT
68037167 TTGTAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (22 bp):
TTACAATTTTTTGTTACAATTT
Found at i:68037262 original size:19 final size:20
Alignment explanation
Indices: 68037232--68037281 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
68037222 AAGTTTTACT
*
68037232 TTTATA-ATTTTTTTATA-A
1 TTTATATATTTTTCTATAGA
*
68037250 TTTATATATTTTTCTCTAGA
1 TTTATATATTTTTCTATAGA
68037270 TTATATATATTT
1 TT-TATATATTT
68037282 GAATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 6 0.22
19 9 0.33
20 3 0.11
21 9 0.33
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTATATATTTTTCTATAGA
Found at i:68037647 original size:15 final size:15
Alignment explanation
Indices: 68037629--68037666 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
68037619 ACATACAACA
*
68037629 ATAATATAAAATAAT
1 ATAATATAAAAAAAT
68037644 ATAATATTAAAAAAAT
1 ATAATA-TAAAAAAAT
68037660 A-AATATA
1 ATAATATA
68037667 CAGTTTATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 10 0.48
16 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATAATATAAAAAAAT
Found at i:68048040 original size:21 final size:21
Alignment explanation
Indices: 68048014--68048054 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68048004 ATCTGCTCAA
* *
68048014 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68048035 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68048055 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68053920 original size:22 final size:22
Alignment explanation
Indices: 68053873--68053922 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
68053863 TAATAACAAC
* *
68053873 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
*
68053895 AAAATGGTAGCAAAATAAGGAG-
1 AAAATAGTAGCAAAATAA-GAGT
68053917 AAAATA
1 AAAATA
68053923 ACAAGAAAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:68054572 original size:14 final size:14
Alignment explanation
Indices: 68054553--68054582 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68054543 ATGTGGCGAA
*
68054553 TAATTTACTTAATG
1 TAATTTAATTAATG
68054567 TAATTTAATTAATG
1 TAATTTAATTAATG
68054581 TA
1 TA
68054583 TTTTTGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (14 bp):
TAATTTAATTAATG
Found at i:68065730 original size:64 final size:68
Alignment explanation
Indices: 68065652--68065812 Score: 186
Period size: 71 Copynumber: 2.4 Consensus size: 68
68065642 TACATGATAC
* * ** *
68065652 ATACTTTAACATTTCATGCAAATATAATATAGAAAATGAT-AA-ATAACGACATAAATTAC-ATA
1 ATACATTAACATTTCATGCAAATATAACATAGAAAACAATGAATATAACAACATAAATTACAATA
68065714 -AT
66 TAT
* *
68065716 ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTACATA
1 ATACATTAACATTTCATGC-AAATATAACATAGAAAACAATGAATATAACAACATAAATTAC--A
68065781 ATATAT
63 ATATAT
* *
68065787 ATACAATAATATTTCATGCAAATATA
1 ATACATTAACATTTCATGCAAATATA
68065813 TAAAAAAAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
64 18 0.22
65 17 0.21
66 2 0.03
67 15 0.19
70 9 0.11
71 19 0.24
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (68 bp):
ATACATTAACATTTCATGCAAATATAACATAGAAAACAATGAATATAACAACATAAATTACAATA
TAT
Found at i:68065963 original size:23 final size:26
Alignment explanation
Indices: 68065924--68065972 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
68065914 AACAAATTAT
*
68065924 AAACATATAAAAAAT-AAG-TAAAAA
1 AAACAAATAAAAAATAAAGATAAAAA
68065948 AAACAAAT-AAAAATAAAGATAAAAA
1 AAACAAATAAAAAATAAAGATAAAAA
68065973 CTAAATACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 10 0.45
25 6 0.27
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (26 bp):
AAACAAATAAAAAATAAAGATAAAAA
Found at i:68066246 original size:7 final size:7
Alignment explanation
Indices: 68066234--68066407 Score: 83
Period size: 8 Copynumber: 23.1 Consensus size: 7
68066224 AATTATACAT
68066234 AATAATA
1 AATAATA
68066241 AATAATA
1 AATAATA
68066248 AATAATAA
1 AATAAT-A
68066256 AATAAT-
1 AATAATA
68066262 AA-AATA
1 AATAATA
*
68066268 TATAATAA
1 AATAAT-A
68066276 AATAA-A
1 AATAATA
68066282 AATAATA
1 AATAATA
68066289 TAATGAATA
1 -AAT-AATA
68066298 ATATATATA
1 A-ATA-ATA
68066307 GTAA-AATGA
1 --AATAAT-A
*
68066316 TATAATA
1 AATAATA
*
68066323 TATAATAA
1 AATAAT-A
68066331 AATATATA
1 AATA-ATA
68066339 AATAAAGTA
1 AAT-AA-TA
*
68066348 TATAATA
1 AATAATA
68066355 AA-ATATA
1 AATA-ATA
*
68066362 AATAGTA
1 AATAATA
68066369 TAATAA-A
1 -AATAATA
68066376 TAATACATA
1 -AATA-ATA
68066385 AATAA-A
1 AATAATA
68066391 AATAATA
1 AATAATA
68066398 TATATAATA
1 -A-ATAATA
68066407 A
1 A
68066408 TTTTTTACAT
Statistics
Matches: 134, Mismatches: 8, Indels: 49
0.70 0.04 0.26
Matches are distributed among these distances:
5 3 0.02
6 16 0.12
7 43 0.32
8 45 0.34
9 25 0.19
10 1 0.01
11 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.31
Consensus pattern (7 bp):
AATAATA
Found at i:68066272 original size:12 final size:12
Alignment explanation
Indices: 68066221--68066365 Score: 99
Period size: 12 Copynumber: 12.2 Consensus size: 12
68066211 TACAAATTTT
68066221 TAAAAT-TATACA
1 TAAAATATATA-A
*
68066233 TAATAATAAATAA
1 TAA-AATATATAA
*
68066246 TAAATAATAAAATAA
1 T-AA-AAT-ATATAA
68066261 TAAAATATATAA
1 TAAAATATATAA
*
68066273 TAAAATA-AAAA
1 TAAAATATATAA
*
68066284 TAATATA-ATGAA
1 TAAAATATAT-AA
* *
68066296 TAATATATATAG
1 TAAAATATATAA
*
68066308 TAAAAT-GAT-A
1 TAAAATATATAA
68066318 T--AATATATAA
1 TAAAATATATAA
68066328 TAAAATATATAAA
1 TAAAATATAT-AA
*
68066341 TAAAGTATATAA
1 TAAAATATATAA
68066353 TAAAATATA-AA
1 TAAAATATATAA
68066364 TA
1 TA
68066366 GTATAATAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
8 3 0.03
9 2 0.02
10 3 0.03
11 16 0.15
12 47 0.43
13 21 0.19
14 11 0.10
15 7 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (12 bp):
TAAAATATATAA
Found at i:68066396 original size:75 final size:70
Alignment explanation
Indices: 68066223--68066401 Score: 180
Period size: 80 Copynumber: 2.4 Consensus size: 70
68066213 CAAATTTTTA
* * *
68066223 AAATTATACAT-AATAATAAATAATAAATAATAAAATAATAAAATATATAATAAAATAAAAATAA
1 AAATAATACATAAATAA-AAATAATATATAATAAAATAATAAAAAATATAATAAAATAAAAATAA
68066287 TATAAT
65 TATAAT
* * *
68066293 GAATAATATATATAGTAAAATGATATAATATATAATAAAATATATAAATAAAGTATATAATAAAA
1 AAATAATACATA-AAT-AAA--A-ATAATATATAATAAAATA-AT-AA-AAA--ATATAATAAAA
* *
68066358 TATAAATAGTATAAT
56 TAAAAATAATATAAT
68066373 AAATAATACATAAATAAAAATAATATATA
1 AAATAATACATAAATAAAAATAATATATA
68066402 TAATAATTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 17
0.76 0.10 0.15
Matches are distributed among these distances:
70 8 0.09
72 3 0.03
73 2 0.02
74 1 0.01
75 27 0.31
76 3 0.03
77 2 0.02
78 5 0.06
79 2 0.02
80 34 0.39
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (70 bp):
AAATAATACATAAATAAAAATAATATATAATAAAATAATAAAAAATATAATAAAATAAAAATAAT
ATAAT
Found at i:68066408 original size:80 final size:80
Alignment explanation
Indices: 68066259--68066408 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
68066249 ATAATAAAAT
* * * *
68066259 AATAAAATATATAATAAAATAAAAATAATATAATGAATAATATATATAGTAAAATGATATAATAT
1 AATAAAATATATAATAAAATAAAAATAATATAATAAATAATACATATAATAAAATAATATAATAT
68066324 ATAATAAAATATATA
66 ATAATAAAATATATA
* * *
68066339 AATAAAGTATATAATAAAATATAAATAGTATAATAAATAATACATA-AATAAAAATAATAT-ATA
1 AATAAAATATATAATAAAATAAAAATAATATAATAAATAATACATATAAT-AAAATAATATAATA
68066402 TAATAAT
65 T-ATAAT
68066409 TTTTTACATA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 6 0.10
80 55 0.90
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (80 bp):
AATAAAATATATAATAAAATAAAAATAATATAATAAATAATACATATAATAAAATAATATAATAT
ATAATAAAATATATA
Found at i:68066433 original size:19 final size:21
Alignment explanation
Indices: 68066395--68066433 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
68066385 AATAAAAATA
*
68066395 ATATATATAATAATTTTTTAC
1 ATATATATAATAATTGTTTAC
68066416 ATATATA-AATAA-TGTTTA
1 ATATATATAATAATTGTTTA
68066434 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATAATAATTGTTTAC
Found at i:68066462 original size:9 final size:9
Alignment explanation
Indices: 68066448--68066487 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
68066438 AAAAATAAAT
68066448 AATATATAA
1 AATATATAA
68066457 AATATATAA
1 AATATATAA
*
68066466 AATAAATAA
1 AATATATAA
68066475 ATTATATATAA
1 A--ATATATAA
68066486 AA
1 AA
68066488 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 19 0.70
11 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AATATATAA
Found at i:68066464 original size:29 final size:29
Alignment explanation
Indices: 68066440--68066496 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
68066430 TTTATAGTAA
68066440 AAATAAATAATATATAAAATATATAAAAT
1 AAATAAATAATATATAAAATATATAAAAT
* * *
68066469 AAATAAATTATATATAAAAAATTTAAAA
1 AAATAAATAATATATAAAATATATAAAA
68066497 AGGATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATAAATAATATATAAAATATATAAAAT
Found at i:68066469 original size:18 final size:19
Alignment explanation
Indices: 68066448--68066487 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
68066438 AAAAATAAAT
*
68066448 AATATATAAA-ATATATAA
1 AATAAATAAATATATATAA
68066466 AATAAATAAATTATATATAA
1 AATAAATAAA-TATATATAA
68066486 AA
1 AA
68066488 AATTTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAAATAAATATATATAA
Found at i:68068758 original size:23 final size:21
Alignment explanation
Indices: 68068722--68068771 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
68068712 GCTTATTGCC
*
68068722 ATTTAAAGCCTTATACTACTACT
1 ATTTAAAGCATTAT--TACTACT
* *
68068745 ATTTAAATCATTATTACTATT
1 ATTTAAAGCATTATTACTACT
68068766 ATTTAA
1 ATTTAA
68068772 TTATTACAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.50
23 12 0.50
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (21 bp):
ATTTAAAGCATTATTACTACT
Found at i:68073958 original size:25 final size:25
Alignment explanation
Indices: 68073930--68073977 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
68073920 CATCAGATTT
*
68073930 AATTTGAAGGATTTCATTTTTCTTC
1 AATTCGAAGGATTTCATTTTTCTTC
68073955 AATTCGAAGGATTTCATTTTTCT
1 AATTCGAAGGATTTCATTTTTCT
68073978 GACATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (25 bp):
AATTCGAAGGATTTCATTTTTCTTC
Found at i:68075783 original size:46 final size:45
Alignment explanation
Indices: 68075731--68075857 Score: 150
Period size: 46 Copynumber: 2.8 Consensus size: 45
68075721 TTGAGACGAG
*
68075731 AGCTAGTGTAAGACATGTCTAGGATATGCATCGGCCT-CAAGATGTA
1 AGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTACAAGA--TA
* *
68075777 AGCTAGTGTAAAACATGTCTGGGATATGCATCAG-CTACAAGATA
1 AGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTACAAGATA
* * *
68075821 TGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCTAGTGTAAGA-CATGTCTGGGATAT-GCATCGGC
68075858 ATTGTACCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
44 12 0.17
45 15 0.22
46 42 0.61
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTACAAGATA
Found at i:68082466 original size:30 final size:30
Alignment explanation
Indices: 68082430--68082488 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
68082420 TTCCATTGCT
68082430 TACATGGTTTCTTCTATAAGAAACTAGACG
1 TACATGGTTTCTTCTATAAGAAACTAGACG
68082460 TACATGGTTTCTTCTATAAGAAACTAGAC
1 TACATGGTTTCTTCTATAAGAAACTAGAC
68082489 TTAATAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (30 bp):
TACATGGTTTCTTCTATAAGAAACTAGACG
Found at i:68083048 original size:2 final size:2
Alignment explanation
Indices: 68083041--68083066 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68083031 CAATGATGAA
68083041 GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT
68083067 TTTTTCCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:68084701 original size:46 final size:48
Alignment explanation
Indices: 68084651--68084823 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 48
68084641 GACGAGAGCT
* *
68084651 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAAGATGTAAGTC
* *
68084697 AGTGTAAGA-CATGTCTGGGACAT-GCATCCG-CTACAAGATGT--GTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CAAGATGTAAGTC
* * * * *
68084741 AGTGTAAGACCATGCCTGGGACATGGCTTCGGCAC-AAATATGTGAGAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCAAGATGT-A-AGTC
68084791 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
68084824 ATTATACCCT
Statistics
Matches: 106, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 46 0.43
48 1 0.01
50 33 0.31
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAAGATGTAAGTC
Found at i:68087529 original size:20 final size:21
Alignment explanation
Indices: 68087501--68087540 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
68087491 TAAACTGATA
* *
68087501 ACTTGGGAAACTTTT-AAAAC
1 ACTTAGGAAAATTTTCAAAAC
68087521 ACTTAGGAAAATTTTCAAAA
1 ACTTAGGAAAATTTTCAAAA
68087541 TACAGGGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (21 bp):
ACTTAGGAAAATTTTCAAAAC
Found at i:68091068 original size:19 final size:19
Alignment explanation
Indices: 68091033--68091070 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68091023 TTGTGATTAA
*
68091033 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
68091052 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
68091071 TTTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:68099345 original size:14 final size:14
Alignment explanation
Indices: 68099326--68099352 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68099316 ATATTTGACT
68099326 TGTTCTTAATTCTG
1 TGTTCTTAATTCTG
68099340 TGTTCTTAATTCT
1 TGTTCTTAATTCT
68099353 TCTTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTCTG
Found at i:68105319 original size:40 final size:40
Alignment explanation
Indices: 68105236--68105578 Score: 476
Period size: 40 Copynumber: 8.6 Consensus size: 40
68105226 TTGAATGCTG
* * * * * *
68105236 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
68105276 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
68105316 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68105356 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
68105396 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68105436 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
68105476 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68105516 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68105555 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68105579 TGAACGAGGA
Statistics
Matches: 279, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.13
40 236 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:68112716 original size:40 final size:40
Alignment explanation
Indices: 68112633--68112975 Score: 476
Period size: 40 Copynumber: 8.6 Consensus size: 40
68112623 TTGAATGCTG
* * * * * *
68112633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
68112673 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
68112713 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68112753 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
68112793 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68112833 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
68112873 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68112913 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68112952 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68112976 TGAACGAGGA
Statistics
Matches: 279, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.13
40 236 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:68117927 original size:34 final size:33
Alignment explanation
Indices: 68117878--68117941 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
68117868 TGTATCAGTA
* *
68117878 ACAGTTCAGTTTCAGT-TAGGGCCTTAGCCCATT
1 ACAGTTCAGTATCAGTGT-GGGCCATAGCCCATT
68117911 ACAGTATCAGTATCAGTGTGGGCCATAGCCC
1 ACAGT-TCAGTATCAGTGTGGGCCATAGCCC
68117942 CTTTTCGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 5 0.19
34 21 0.78
35 1 0.04
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (33 bp):
ACAGTTCAGTATCAGTGTGGGCCATAGCCCATT
Found at i:68121316 original size:42 final size:42
Alignment explanation
Indices: 68121205--68121317 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 42
68121195 TATTACACCA
* ** *
68121205 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCACATCG
* * * ** *
68121247 TTGCCAATAGCCCAGCTATAATCTTACACGAAATCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCACATCG
68121290 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
68121318 ATATCCTCGG
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
42 23 0.42
43 32 0.58
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCACATCG
Found at i:68124593 original size:21 final size:21
Alignment explanation
Indices: 68124539--68124582 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
68124529 AACCAGTCAG
*
68124539 ACATTAAAATTTCTAAATCAA
1 ACATTAAAATTTCTAAACCAA
68124560 ACATTAAAATTTCTAAACCAA
1 ACATTAAAATTTCTAAACCAA
68124581 AC
1 AC
68124583 CTTCACATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (21 bp):
ACATTAAAATTTCTAAACCAA
Found at i:68130982 original size:27 final size:27
Alignment explanation
Indices: 68130952--68131129 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68130942 ATATTGAGTC
* * * *
68130952 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68130979 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68131006 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68131034 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68131061 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68131088 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68131115 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68131130 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68131091 original size:82 final size:81
Alignment explanation
Indices: 68130973--68131128 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68130963 TGCTATATAA
* *
68130973 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68131038 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68131055 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68131119 CACTTAGTGC
65 CACTTAGTGC
68131129 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68139084 original size:27 final size:27
Alignment explanation
Indices: 68139054--68139230 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
68139044 TATTGAGTCT
* * * *
68139054 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
68139081 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
68139108 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
68139136 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
68139163 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
68139190 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
68139217 GCACACTTAGTGCT
1 GCACACTTAGTGCT
68139231 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:68139192 original size:82 final size:81
Alignment explanation
Indices: 68139074--68139229 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68139064 TGCTATATAA
* *
68139074 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68139139 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68139156 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68139220 CACTTAGTGC
65 CACTTAGTGC
68139230 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68145565 original size:20 final size:21
Alignment explanation
Indices: 68145524--68145579 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
68145514 GCTACTAGAT
*
68145524 GCACCATAGTGCAAATACAGAG
1 GCACCAAAGTGC-AATACAGAG
*
68145546 GTACCAAAGTGCAA-ACAGAG
1 GCACCAAAGTGCAATACAGAG
68145566 GCACCAAAGTGCAA
1 GCACCAAAGTGCAA
68145580 CAAAGGCATC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 19 0.61
21 2 0.06
22 10 0.32
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (21 bp):
GCACCAAAGTGCAATACAGAG
Found at i:68145586 original size:19 final size:19
Alignment explanation
Indices: 68145548--68145598 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
68145538 ATACAGAGGT
*
68145548 ACCAAAGTGCAAACAGAGGC
1 ACCAAAGTGC-AACAAAGGC
68145568 ACCAAAGTGCAACAAAGGC
1 ACCAAAGTGCAACAAAGGC
* *
68145587 ATCGAAGTGCAA
1 ACCAAAGTGCAA
68145599 ACCCGTACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.45, C:0.24, G:0.24, T:0.08
Consensus pattern (19 bp):
ACCAAAGTGCAACAAAGGC
Found at i:68149531 original size:19 final size:20
Alignment explanation
Indices: 68149489--68149532 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
68149479 CCTCTTGGGT
**
68149489 ATTTATTTTTAATTTGTTAG
1 ATTTATTTTTAATTCATTAG
68149509 -TTTATTTTT-ATTCATTAG
1 ATTTATTTTTAATTCATTAG
68149527 ATTTAT
1 ATTTAT
68149533 ATTTGCTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.66
Consensus pattern (20 bp):
ATTTATTTTTAATTCATTAG
Found at i:68155587 original size:42 final size:40
Alignment explanation
Indices: 68155477--68155594 Score: 110
Period size: 42 Copynumber: 2.9 Consensus size: 40
68155467 TACCGTATCA
* * *
68155477 ATGCCATACCCCAGATATGGTCTTACATGAAATATCAAATCG
1 ATGCCATATCCCAGATATGGTCTTATA-CAAA-ATCAAATCG
* * * ** * *
68155519 ACGCCATGTCCCTGGCATGGTATTATACAAAATCACATACTG
1 ATGCCATATCCCAGATATGGTCTTATACAAAATCAAAT-C-G
68155561 ATGCCATATCCCAGATATGGTCTTATACAAAATC
1 ATGCCATATCCCAGATATGGTCTTATACAAAATC
68155595 TCGGTAGTAC
Statistics
Matches: 58, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
40 6 0.10
41 4 0.07
42 48 0.83
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (40 bp):
ATGCCATATCCCAGATATGGTCTTATACAAAATCAAATCG
Found at i:68160671 original size:17 final size:17
Alignment explanation
Indices: 68160629--68160672 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
68160619 AAACTTGAGT
*
68160629 TCTAATAGATGAAGCTG
1 TCTAATAGCTGAAGCTG
68160646 TCTAATAGCTGAAGCTG
1 TCTAATAGCTGAAGCTG
68160663 TCTAATAGCT
1 TCTAATAGCT
68160673 ATAAAACCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (17 bp):
TCTAATAGCTGAAGCTG
Found at i:68161206 original size:22 final size:22
Alignment explanation
Indices: 68161152--68161206 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
68161142 TTAAATTGAG
*
68161152 AAATGCGAAAAGTTAGTGGTTA
1 AAATGCGAAATGTTAGTGGTTA
*
68161174 AAATACGAAATGTTAGTGGTTA
1 AAATGCGAAATGTTAGTGGTTA
68161196 AAATGCGAAAT
1 AAATGCGAAAT
68161207 AAAAGAACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.44, C:0.05, G:0.24, T:0.27
Consensus pattern (22 bp):
AAATGCGAAATGTTAGTGGTTA
Found at i:68165941 original size:21 final size:20
Alignment explanation
Indices: 68165913--68165951 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
68165903 ACGTGTATTT
68165913 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
68165933 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
68165952 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:68170084 original size:48 final size:48
Alignment explanation
Indices: 68170028--68170213 Score: 291
Period size: 48 Copynumber: 3.9 Consensus size: 48
68170018 GTCTTACATG
* *
68170028 ACATATCATCACCGATGCCATGTCCTAGACATGGTCTTACACTGGCAC
1 ACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
* * *
68170076 ACATATCATCGCCGATGCCATGTCCTAGACATGGTCGTACACAGGCAC
1 ACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
* *
68170124 ATATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAAGCAC
1 ACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
* *
68170172 ATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 ACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACAC
68170214 GGAATCTCAT
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (48 bp):
ACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
Found at i:68170679 original size:29 final size:29
Alignment explanation
Indices: 68170624--68170681 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
68170614 CAAAAATCAT
* *
68170624 ACTTTTACAAATTTACATTTTTACCCCTA
1 ACTTTCACAAATTTACATATTTACCCCTA
*
68170653 ACTTTCACATATTTACA-ATTTAGCCCCTA
1 ACTTTCACAAATTTACATATTTA-CCCCTA
68170682 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.31, C:0.26, G:0.02, T:0.41
Consensus pattern (29 bp):
ACTTTCACAAATTTACATATTTACCCCTA
Found at i:68182118 original size:30 final size:29
Alignment explanation
Indices: 68182083--68182141 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
68182073 TTATGGATTG
*
68182083 ATGGGTTTTGTTTATTATGTTAACTTTTTT
1 ATGGGTTTTGTTTATGATGTTAA-TTTTTT
*
68182113 ATGGGTTTTGTTTGTGATGTTAATTTTTT
1 ATGGGTTTTGTTTATGATGTTAATTTTTT
68182142 GGATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.15, C:0.02, G:0.20, T:0.63
Consensus pattern (29 bp):
ATGGGTTTTGTTTATGATGTTAATTTTTT
Found at i:68183653 original size:28 final size:28
Alignment explanation
Indices: 68183586--68183645 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
68183576 GAAGTCTGCT
*
68183586 AGGACTATCTAAATTTGAGAAGTCCGTC
1 AGGACTATCTAAATGTGAGAAGTCCGTC
* *
68183614 AGGACTATCTAAATGTGGGAAGTTCGTC
1 AGGACTATCTAAATGTGAGAAGTCCGTC
68183642 AGGA
1 AGGA
68183646 TTGTCTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGACTATCTAAATGTGAGAAGTCCGTC
Found at i:68185314 original size:17 final size:18
Alignment explanation
Indices: 68185292--68185326 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
68185282 GGAATATTGG
*
68185292 GAAAAAGAA-GGAAATAA
1 GAAAAAAAATGGAAATAA
68185309 GAAAAAAAATGGAAATAA
1 GAAAAAAAATGGAAATAA
68185327 TTTTTAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (18 bp):
GAAAAAAAATGGAAATAA
Found at i:68200207 original size:44 final size:44
Alignment explanation
Indices: 68200142--68200225 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
68200132 TTGATATCTC
*
68200142 AAAGTCTATGGTTATACCATGGCAATTAAGGA-AGAATTGATGGA
1 AAAGTCCATGGTTATACCATGGCAATTAAGGAGA-AATTGATGGA
* *
68200186 AAAGTCCAT-GTTCATAGCATGGCATTTAAGGAGAAATTGA
1 AAAGTCCATGGTT-ATACCATGGCAATTAAGGAGAAATTGA
68200226 CGGTTAAGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
43 3 0.09
44 31 0.89
45 1 0.03
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGGTTATACCATGGCAATTAAGGAGAAATTGATGGA
Found at i:68204189 original size:47 final size:47
Alignment explanation
Indices: 68204127--68204248 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
68204117 GCATTGGCAC
68204127 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
68204174 TTAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
68204221 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
68204249 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:68204285 original size:54 final size:54
Alignment explanation
Indices: 68204221--68204423 Score: 230
Period size: 54 Copynumber: 3.8 Consensus size: 54
68204211 TGGCATTTGG
* * * * *
68204221 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
* * * *
68204275 TAAGGTAAGGAAATCATGCAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTA
* * * *
68204330 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGG-TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
* * *
68204383 TAAGGCAAGGATACCACGTAAGACCTTGCCAAGACATGGCA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCA
68204424 ATGGTAAGTT
Statistics
Matches: 126, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.25
54 45 0.36
55 41 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
Found at i:68204356 original size:55 final size:54
Alignment explanation
Indices: 68204227--68204423 Score: 236
Period size: 55 Copynumber: 3.6 Consensus size: 54
68204217 TTGGTAAGAT
* * * * *
68204227 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
68204281 AAGGAAATCATGCAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
68204336 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
68204389 AAGGATACCACGTAAGACCTTGCCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
68204424 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.27
54 40 0.33
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:68204435 original size:53 final size:54
Alignment explanation
Indices: 68204227--68204434 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
68204217 TTGGTAAGAT
* * * *
68204227 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
68204281 AAGGAAATCATGCAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
68204336 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
68204389 AAGGATACCACGTAAGACCTTGCCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
68204435 AAAAAGGAAA
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.32
54 40 0.31
55 41 0.31
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:68204453 original size:108 final size:109
Alignment explanation
Indices: 68204235--68204458 Score: 272
Period size: 108 Copynumber: 2.1 Consensus size: 109
68204225 ATAAGGATAT
* * *
68204235 CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGTAAGGAAATCATGCAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGCAAGGAAACCACGCAAGACC
* * * * * *
68204300 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGCCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
** * * *
68204344 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGCAAGGAAACCACGCAAGACC
* *
68204408 TTGCCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAAGGTTCC
66 ATGCCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGG-TCC
*
68204452 CAAGTAA
1 CATGTAA
68204459 TCCAATGAGT
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
107 11 0.11
108 51 0.53
109 35 0.36
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGCAAGGAAACCACGCAAGACC
ATGCCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:68215126 original size:133 final size:133
Alignment explanation
Indices: 68214888--68215154 Score: 534
Period size: 133 Copynumber: 2.0 Consensus size: 133
68214878 GTATCTACAC
68214888 GCTTGCATCAATGCCGTCTTTCAAATTCAAACATAAAAATAATAATTAAAAGTTAGTTATACTGC
1 GCTTGCATCAATGCCGTCTTTCAAATTCAAACATAAAAATAATAATTAAAAGTTAGTTATACTGC
68214953 AGATCGGTCCCATTTGTTGCTTATCGAAGAGCAGAATTTACAGTCTAGTTTCATTGAAGCTAACT
66 AGATCGGTCCCATTTGTTGCTTATCGAAGAGCAGAATTTACAGTCTAGTTTCATTGAAGCTAACT
68215018 TTG
131 TTG
68215021 GCTTGCATCAATGCCGTCTTTCAAATTCAAACATAAAAATAATAATTAAAAGTTAGTTATACTGC
1 GCTTGCATCAATGCCGTCTTTCAAATTCAAACATAAAAATAATAATTAAAAGTTAGTTATACTGC
68215086 AGATCGGTCCCATTTGTTGCTTATCGAAGAGCAGAATTTACAGTCTAGTTTCATTGAAGCTAACT
66 AGATCGGTCCCATTTGTTGCTTATCGAAGAGCAGAATTTACAGTCTAGTTTCATTGAAGCTAACT
68215151 TTG
131 TTG
68215154 G
1 G
68215155 GTTTCCACGG
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (133 bp):
GCTTGCATCAATGCCGTCTTTCAAATTCAAACATAAAAATAATAATTAAAAGTTAGTTATACTGC
AGATCGGTCCCATTTGTTGCTTATCGAAGAGCAGAATTTACAGTCTAGTTTCATTGAAGCTAACT
TTG
Found at i:68221318 original size:11 final size:11
Alignment explanation
Indices: 68221297--68221326 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
68221287 GCTACACTCA
68221297 TTTTCTTTTTTC
1 TTTT-TTTTTTC
68221309 TTTTTTTTTTC
1 TTTTTTTTTTC
68221320 TTTTTTT
1 TTTTTTT
68221327 CTGAATTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:68223734 original size:28 final size:29
Alignment explanation
Indices: 68223677--68223734 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
68223667 TACAGGGGTT
*
68223677 TTCACACGGCCTGGCACATGCCCGTGTCC
1 TTCACACGGCCTGGCACACGCCCGTGTCC
68223706 TTCACACGGCCAT-G-ACACGCCCGTGTCC
1 TTCACACGGCC-TGGCACACGCCCGTGTCC
68223734 T
1 T
68223735 AGCCCGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 12 0.44
30 1 0.04
ACGTcount: A:0.16, C:0.41, G:0.22, T:0.21
Consensus pattern (29 bp):
TTCACACGGCCTGGCACACGCCCGTGTCC
Found at i:68228956 original size:47 final size:47
Alignment explanation
Indices: 68228885--68229336 Score: 769
Period size: 47 Copynumber: 9.6 Consensus size: 47
68228875 CCCTTCGGGA
* * * * * *
68228885 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68228932 CCTATCACATATATACACTTTCACATTCATCACATGGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68228979 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68229026 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68229073 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68229120 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68229167 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68229214 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68229263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68229310 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68229337 TATTCAAATA
Statistics
Matches: 385, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 340 0.88
49 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68228963 original size:25 final size:25
Alignment explanation
Indices: 68228935--68229013 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
68228925 ACTCGGCCCT
68228935 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ** *
68228960 ATCACAT-GGGCCA-TTTGGCCTT-
1 ATCACATATATACACTTTCACATTC
68228982 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
68229007 ATCACAT
1 ATCACAT
68229014 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:68233396 original size:40 final size:40
Alignment explanation
Indices: 68233364--68233675 Score: 507
Period size: 40 Copynumber: 7.8 Consensus size: 40
68233354 CCAGCATGAT
* * * *
68233364 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
68233404 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
68233444 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68233484 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68233524 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68233564 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
68233604 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
68233644 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
68233676 CTCAATTCTA
Statistics
Matches: 256, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:68235159 original size:47 final size:47
Alignment explanation
Indices: 68235088--68235625 Score: 885
Period size: 47 Copynumber: 11.6 Consensus size: 47
68235078 GCCCTTCGGA
* * * * * *
68235088 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68235135 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235181 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235228 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235274 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68235320 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235366 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68235413 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235460 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68235507 CTTATCACATATATATACACTTTCACATTCAT--CA--GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235552 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68235599 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68235626 TATTCAAATA
Statistics
Matches: 465, Mismatches: 16, Indels: 20
0.93 0.03 0.04
Matches are distributed among these distances:
43 22 0.05
45 27 0.06
46 163 0.35
47 231 0.50
49 22 0.05
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68235339 original size:139 final size:140
Alignment explanation
Indices: 68235088--68235625 Score: 865
Period size: 139 Copynumber: 3.9 Consensus size: 140
68235078 GCCCTTCGGA
* * * * ** *
68235088 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGCCTTATCACATATATACAC
* *
68235153 TTTCACATTCATCACATTGGCCATT-CGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
68235217 GGCCATTAGGC
130 GGCCATTAGGC
68235228 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTATCACATATATACACT
*
68235293 TTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCA
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
68235357 GCTATTA-GC
131 GCCATTAGGC
68235366 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATACAC
*
68235431 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
68235496 GGCCATTAGGC
130 GGCCATTAGGC
*
68235507 CTTATCACATATATATACACTTTCACATTCAT--CA--GGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGCCTTATCACATATATAC
68235568 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
68235626 TATTCAAATA
Statistics
Matches: 375, Mismatches: 16, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
138 52 0.14
139 201 0.54
140 88 0.23
141 12 0.03
143 22 0.06
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:68235494 original size:232 final size:230
Alignment explanation
Indices: 68235088--68235625 Score: 873
Period size: 232 Copynumber: 2.3 Consensus size: 230
68235078 GCCCTTCGGA
* * * * ** *
68235088 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGCCTTATCACATATATACAC
*
68235153 TTTCACATTCATCACATTGGCCATTCGCCTTATCACATATATACACTTTCACATTCATCACATCG
65 TTTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACACTTTCACATTCATCACATCG
68235218 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCAC
130 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
68235282 -ATATATACACTTTCACATTCATCACATCGCCATTAGGC
195 AATATATACACTTTCACATTCAT--CA-CGCCATTAGGC
* *
68235320 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTATCACATATATACACT
*
68235385 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATT-CGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
68235450 GCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
130 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
68235515 ATATATATACACTTTCACATTCATCAGGCCATTCGGC
195 A-ATATATACACTTTCACATTCATCACGCCATTAGGC
68235552 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATACAC
68235617 TTTCACATT
65 TTTCACATT
68235626 TATTCAAATA
Statistics
Matches: 285, Mismatches: 16, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
231 44 0.15
232 178 0.62
233 41 0.14
235 22 0.08
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (230 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
ATATATACACTTTCACATTCATCACGCCATTAGGC
Found at i:68244997 original size:11 final size:11
Alignment explanation
Indices: 68244981--68245012 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
68244971 TTATTTAATG
68244981 TATAATAATAA
1 TATAATAATAA
*
68244992 TATAATAGTAA
1 TATAATAATAA
68245003 TATAATAATA
1 TATAATAATA
68245013 TTTTAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (11 bp):
TATAATAATAA
Found at i:68248767 original size:50 final size:49
Alignment explanation
Indices: 68248642--68248830 Score: 218
Period size: 50 Copynumber: 3.8 Consensus size: 49
68248632 GTAGCAAAAC
* * * * *
68248642 TATCTGGCACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
68248691 TAT-TCGGTACACATAGTAGCCTGCACTTTGTACTACACACGTGACCTAAC
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
68248741 TATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* **
68248792 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
68248831 TGCGACCTGG
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 38 0.32
50 43 0.36
51 36 0.31
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:68248857 original size:101 final size:99
Alignment explanation
Indices: 68248655--68248838 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 99
68248645 CTGGCACGCA
* * * *
68248655 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATTCGGTACACATAGTAGCCTGCACTTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATTCGGTACACATAGTAGCCTGCACTTA
*
68248720 GTACTACACACGTGACCTAACTATCTGATACACG
66 GTACTACACACGCGACCTAACTATCTGATACACG
* **
68248754 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTA-TCGGGTATGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATTC-GGTACACATAGTAGCCTGCAC
*
68248818 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
68248839 GGCTACATAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 28 0.38
100 5 0.07
101 40 0.55
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATTCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCTGATACACG
Found at i:68254305 original size:72 final size:72
Alignment explanation
Indices: 68254215--68254357 Score: 286
Period size: 72 Copynumber: 2.0 Consensus size: 72
68254205 GCGATGCTAA
68254215 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
1 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
68254280 CATAGAC
66 CATAGAC
68254287 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
1 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
68254352 CATAGA
66 CATAGA
68254358 TCATAAAATT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.49, C:0.08, G:0.25, T:0.18
Consensus pattern (72 bp):
GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
CATAGAC
Found at i:68257997 original size:49 final size:49
Alignment explanation
Indices: 68257944--68258175 Score: 261
Period size: 49 Copynumber: 4.7 Consensus size: 49
68257934 CTGGTACGCA
*
68257944 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACG
* * * ** * *
68257993 TAGTAGCCTGCACTTAGTACTACAAACGTGGCCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATTCGGTACACG
* * *
68258043 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGA-A
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATTC-GGTAC-ACG
* *
68258094 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACG
** *
68258143 CCGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
68258176 TCACAATAGG
Statistics
Matches: 151, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 66 0.44
50 48 0.32
51 35 0.23
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATTCGGTACACG
Found at i:68258167 original size:100 final size:99
Alignment explanation
Indices: 68257945--68258175 Score: 270
Period size: 100 Copynumber: 2.3 Consensus size: 99
68257935 TGGTACGCAT
* * *
68257945 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACTTAG
1 AGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGTAGCCTGCACTTAG
* * ** *
68258010 TACTACAAACGTGGCCTAACCATTTGATACACGT
66 TACTACAAACGCGACCTAACCATCCGATACACGC
*
68258044 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGA-ATAGTAGCCTGCAC
1 AGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTC-GGTAC-ACATAGTAGCCTGCAC
* * ** *
68258107 TTAGTACTACACATGCGACC-AATTATCCGGTACACGC
62 TTAGTACTACAAACGCGACCTAACCATCCGATACACGC
*
68258144 CGTAGCCTGCACTTAGTACTACACACGTGACC
1 AGTAGCCTGCACTTAGTACTACACACGTGACC
68258176 TCACAATAGG
Statistics
Matches: 112, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
99 29 0.26
100 45 0.40
101 37 0.33
102 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGTAGCCTGCACTTAG
TACTACAAACGCGACCTAACCATCCGATACACGC
Found at i:68261365 original size:32 final size:34
Alignment explanation
Indices: 68261329--68261393 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
68261319 TAACAGTGGT
*
68261329 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
68261361 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
68261394 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:68263273 original size:26 final size:26
Alignment explanation
Indices: 68263241--68263348 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
68263231 TGAAATGCCC
*
68263241 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68263267 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68263293 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68263319 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68263345 ATCA
1 ATCA
68263349 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68265841 original size:50 final size:49
Alignment explanation
Indices: 68265725--68265856 Score: 183
Period size: 50 Copynumber: 2.7 Consensus size: 49
68265715 CTGGTACGCA
* * ** *
68265725 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATTCGATACACG
* * *
68265774 TAGTAGCCTGCACTTAGTACTACAAACGTGGCCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATTCGATACACG
68265824 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
68265857 TCACAATAGA
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 29 0.40
50 43 0.60
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATTCGATACACG
Found at i:68270600 original size:19 final size:19
Alignment explanation
Indices: 68270576--68270614 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
68270566 CCTAATGAGT
68270576 ATATTTTCAATATAAATCA
1 ATATTTTCAATATAAATCA
68270595 ATATTTTCAATATAAATCA
1 ATATTTTCAATATAAATCA
68270614 A
1 A
68270615 CAAGAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATATTTTCAATATAAATCA
Done.