Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 203 of 373
Found at i:68569818 original size:42 final size:42
Alignment explanation
Indices: 68569759--68569850 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
68569749 TAGTCTCCCC
* *
68569759 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
68569801 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
68569843 AAATGGGC
1 AAATGGGC
68569851 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTCATATTG
Found at i:68569915 original size:31 final size:31
Alignment explanation
Indices: 68569874--68569957 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
68569864 CGTTTACAGT
68569874 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
* *
68569905 AAAGTCTTCGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
*
68569936 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCTAGTGATATG
68569958 TCAAGACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATATGATTTATGA
Found at i:68578283 original size:14 final size:14
Alignment explanation
Indices: 68578264--68578302 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
68578254 ACGGTTATTC
68578264 TTTTTTTTCTTCTT
1 TTTTTTTTCTTCTT
*
68578278 TTTTTTTCCTTCTT
1 TTTTTTTTCTTCTT
*
68578292 TCTTTCTTTCT
1 T-TTTTTTTCT
68578303 ATGCCGTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTTTCTTCTT
Found at i:68579118 original size:24 final size:24
Alignment explanation
Indices: 68579086--68579142 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
68579076 CGAGACTACT
68579086 GTGGACCTACGGTTGGGTCGGTAA
1 GTGGACCTACGGTTGGGTCGGTAA
68579110 GTGGACCTACGGTTGGGTCGGTAA
1 GTGGACCTACGGTTGGGTCGGTAA
68579134 GTGGACCTA
1 GTGGACCTA
68579143 GACCCCCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.40, T:0.25
Consensus pattern (24 bp):
GTGGACCTACGGTTGGGTCGGTAA
Found at i:68582839 original size:16 final size:16
Alignment explanation
Indices: 68582820--68582871 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
68582810 CATACATATT
68582820 CCATAACATCCAAATA
1 CCATAACATCCAAATA
* * * *
68582836 CCAT-CCAATTCATATT
1 CCATAAC-ATCCAAATA
68582852 CCATAACATCCAAATA
1 CCATAACATCCAAATA
68582868 CCAT
1 CCAT
68582872 CCAATTCACT
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
15 1 0.04
16 24 0.92
17 1 0.04
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (16 bp):
CCATAACATCCAAATA
Found at i:68582850 original size:32 final size:32
Alignment explanation
Indices: 68582814--68582879 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
68582804 CCATTTCATA
68582814 CATATTCCATAACATCCAAATACCATCCAATT
1 CATATTCCATAACATCCAAATACCATCCAATT
68582846 CATATTCCATAACATCCAAATACCATCCAATT
1 CATATTCCATAACATCCAAATACCATCCAATT
68582878 CA
1 CA
68582880 CTACTCAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (32 bp):
CATATTCCATAACATCCAAATACCATCCAATT
Found at i:68585082 original size:46 final size:46
Alignment explanation
Indices: 68584986--68585108 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 46
68584976 TGAGAGCCAT
* *
68584986 TGTAAGATCATGTCTGGGACATGGCATCGACATCGAGATGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGATAAGTGCTAG
* *
68585034 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGAAGTAAGT-C-AG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAG-A-TAAGTGCTAG
*
68585080 TGTAAGACATGTCTGGGATATGCATCGGC
1 TGTAAGACATGTCTGGGACATGCATCGGC
68585109 TACGGGATGA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
46 41 0.61
47 15 0.22
48 11 0.16
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATCGAGATAAGTGCTAG
Found at i:68589199 original size:27 final size:27
Alignment explanation
Indices: 68589168--68589346 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
68589158 TAAATTGTAC
68589168 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68589195 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68589221 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68589249 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68589277 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68589304 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68589331 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
68589347 ACTCAATATA
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68589282 original size:82 final size:81
Alignment explanation
Indices: 68589169--68589324 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68589159 AAATTGTACA
* *
68589169 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68589233 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68589250 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68589315 TGCGAGTTGA
65 TGCGAATTGA
68589325 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68589336 original size:82 final size:81
Alignment explanation
Indices: 68589165--68589346 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
68589155 GATTAAATTG
* *
68589165 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68589230 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68589246 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68589310 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68589328 TATAGCACTGAGTGTGCGA
1 TACAGCACTAAGTGTGCGA
68589347 ACTCAATATA
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68592779 original size:30 final size:29
Alignment explanation
Indices: 68592730--68592786 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
68592720 ATAAAGATAA
*
68592730 AGAAAACCGAATAATGAAATCCAAGATTG
1 AGAAAACCGAATAAAGAAATCCAAGATTG
*
68592759 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACC-GAATAAAGAAATCCAAGAT
68592787 ATGATACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.54, C:0.16, G:0.16, T:0.14
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCCAAGATTG
Found at i:68598910 original size:27 final size:27
Alignment explanation
Indices: 68598869--68598922 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68598859 TGTCATGTGA
* *
68598869 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
68598896 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
68598923 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:68599228 original size:49 final size:49
Alignment explanation
Indices: 68599149--68599393 Score: 256
Period size: 49 Copynumber: 4.9 Consensus size: 49
68599139 TCTATTGTGA
* * * * * *
68599149 GGTCACGTGTGTAGTATTAAGTACAGGCTACTACTTATACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
68599198 GGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * *
68599248 CGATAACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AATT
*
68599299 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
68599348 TGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
68599394 GCCTTGTCTA
Statistics
Matches: 162, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 80 0.49
50 44 0.27
51 37 0.23
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:68599285 original size:28 final size:28
Alignment explanation
Indices: 68599253--68599336 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
68599243 AACTTCGATA
68599253 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* *
68599281 ACGTGTATCAG-A-T--G-GATAGG-T-C-
1 ACGTGTGT-AGTACTAAGTG-CAGGCTACT
68599303 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
68599331 ACGTGT
1 ACGTGT
68599337 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 2 0.05
25 8 0.19
26 2 0.05
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:68599339 original size:101 final size:98
Alignment explanation
Indices: 68599153--68599377 Score: 261
Period size: 101 Copynumber: 2.3 Consensus size: 98
68599143 TTGTGAGGTC
* * * * * * *
68599153 ACGTGTGTAGTATTAAGTACAGGCTACTACTTATACCGGATAATTGGTCGCATGTGTAGTAGTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATAGGTCACATGTGTAGTACTAA
* *
68599218 GTGCAGGCTACTATGCGTACCCGATAACTTCGATA
66 GTGCAGGCTACTACGCGTACCAGATAA-TTCG-TA
* * * *
68599253 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAGGTCACGTGTGTAGTACTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGAT-AATAGGTCACATGTGTAGTACTA
* * *
68599318 AGTGCAGGCTACTACGTGTACCAGATAATTTGTC
65 AGTGCAGGCTACTACGCGTACCAGATAATTCGTA
* *
68599352 GCATGTGTAGTACTAAGTGCAGGCTA
1 ACGTGTGTAGTACTAAGTGCAGGCTA
68599378 TTATGCGTAC
Statistics
Matches: 106, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
99 25 0.24
100 38 0.36
101 43 0.41
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (98 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATAGGTCACATGTGTAGTACTAA
GTGCAGGCTACTACGCGTACCAGATAATTCGTA
Found at i:68604463 original size:30 final size:30
Alignment explanation
Indices: 68604429--68604491 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
68604419 ACTTAACAAG
68604429 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
68604459 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
68604489 CAA
1 CAA
68604492 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:68608236 original size:39 final size:40
Alignment explanation
Indices: 68608141--68608332 Score: 144
Period size: 39 Copynumber: 4.9 Consensus size: 40
68608131 ACTTGAAACC
** * *
68608141 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* ** * *
68608180 AATACCAGCTTAAAGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* * * * *
68608219 ATTTCTAGCACGTAGCCTGC-GGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* * ** *
68608258 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCAAATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* *
68608297 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGA
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGA
68608333 TATACATCAC
Statistics
Matches: 125, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
38 17 0.14
39 108 0.86
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
Found at i:68608266 original size:78 final size:78
Alignment explanation
Indices: 68608173--68608336 Score: 179
Period size: 78 Copynumber: 2.1 Consensus size: 78
68608163 GAATTTAAAC
** * * ** * * *
68608173 CCGG-TATAATACCAGCTTAAAGCCTGCGGGA-CTTTAGCCCGGACATATTTCTAGCACGTAGCC
1 CCGGATATAATACCAGCACAAAGCCTGC-GGACCCTAAGCCCAAACATAATTCCAGCACATAGCC
*
68608236 TGCGGACCTTAAGT
65 TGCGGACCCTAAGT
* * * *
68608250 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCAAATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACAAAGCCTGCGGACCCTAAGCCCAAACATAATTCCAGCACATAGCCT
68608315 GCGGACCCTAAGT
66 GCGGACCCTAAGT
68608328 CCGGATATA
1 CCGGATATA
68608337 CATCACTGAA
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
77 7 0.10
78 64 0.90
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (78 bp):
CCGGATATAATACCAGCACAAAGCCTGCGGACCCTAAGCCCAAACATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:68608336 original size:39 final size:39
Alignment explanation
Indices: 68608211--68608336 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
68608201 GGACTTTAGC
* * * * *
68608211 CCGGACATATTTCTAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
68608250 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
**
68608289 CCAAATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
68608328 CCGGATATA
1 CCGGATATA
68608337 CATCACTGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:68614861 original size:39 final size:40
Alignment explanation
Indices: 68614818--68614912 Score: 106
Period size: 39 Copynumber: 2.5 Consensus size: 40
68614808 ACCAGCTCGA
* * *
68614818 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAACACGT
1 AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAACACAT
* * *
68614857 AGCCTG-AGGACCTTAAGTCCGGATATAATTCCAACACAT
1 AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAACACAT
*
68614896 AGCCTGC-GGACCCTAAG
1 AGCCTGCGGGACCTTAAG
68614913 TCCAGATATA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
38 3 0.06
39 44 0.94
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAACACAT
Found at i:68614913 original size:39 final size:39
Alignment explanation
Indices: 68614836--68614922 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
68614826 GGACTTTAGC
* * * *
68614836 CCGGACATATTTCCAACACGTAGCCTGAGGACCTTAAGT
1 CCGGATATAATTCCAACACATAGCCTGAGGACCCTAAGT
*
68614875 CCGGATATAATTCCAACACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAACACATAGCCTGAGGACCCTAAGT
*
68614914 CCAGATATA
1 CCGGATATA
68614923 CATCACTGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAACACATAGCCTGAGGACCCTAAGT
Found at i:68616166 original size:17 final size:19
Alignment explanation
Indices: 68616124--68616167 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
68616114 ATGAAATTTT
*
68616124 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
68616143 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
68616161 AA-TATTA
1 AATTATTA
68616168 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:68618687 original size:11 final size:11
Alignment explanation
Indices: 68618668--68618721 Score: 62
Period size: 11 Copynumber: 5.3 Consensus size: 11
68618658 CATGGTATGT
68618668 ATGATATGCAC
1 ATGATATGCAC
*
68618679 ATGACATG--C
1 ATGATATGCAC
68618688 ATGATATGCAC
1 ATGATATGCAC
*
68618699 ATGATATG--T
1 ATGATATGCAC
68618708 ATGATATGCAC
1 ATGATATGCAC
68618719 ATG
1 ATG
68618722 GTGTATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 16 0.46
11 19 0.54
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68618691 original size:20 final size:20
Alignment explanation
Indices: 68618668--68618721 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
68618658 CATGGTATGT
68618668 ATGATATGCACATGACATGC
1 ATGATATGCACATGACATGC
* *
68618688 ATGATATGCACATGATATGT
1 ATGATATGCACATGACATGC
68618708 ATGATATGCACATG
1 ATGATATGCACATG
68618722 GTGTATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
ATGATATGCACATGACATGC
Found at i:68618827 original size:24 final size:24
Alignment explanation
Indices: 68618771--68618851 Score: 103
Period size: 23 Copynumber: 3.4 Consensus size: 24
68618761 GAGGAAGTGC
*
68618771 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGTCCCAGTTATT
*
68618795 -AAAGGGCTTATGTCCTAGTTATT
1 AAAAGGGCTTATGTCCCAGTTATT
*
68618818 AAAAGGGCTT-TTTCCCCAGTTATT
1 AAAAGGGCTTATGT-CCCAGTTATT
68618842 AAAAGAGGCT
1 AAAAG-GGCT
68618852 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 23 0.46
24 23 0.46
25 4 0.08
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (24 bp):
AAAAGGGCTTATGTCCCAGTTATT
Found at i:68619094 original size:31 final size:31
Alignment explanation
Indices: 68619059--68619122 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
68619049 CGTTTACAGT
*
68619059 AAAGGTTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68619090 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68619121 AA
1 AA
68619123 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68625150 original size:13 final size:13
Alignment explanation
Indices: 68625128--68625160 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
68625118 AAGGGTTTGT
68625128 TTAT-TAAACTAA
1 TTATCTAAACTAA
68625140 TTATCTAAACTAA
1 TTATCTAAACTAA
*
68625153 TTAACTAA
1 TTATCTAA
68625161 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:68628081 original size:6 final size:6
Alignment explanation
Indices: 68628062--68628118 Score: 89
Period size: 6 Copynumber: 9.7 Consensus size: 6
68628052 CTTTATAACG
* *
68628062 AAAAGT AAACAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
68628110 AAAAA- AAAA
1 AAAAAT AAAA
68628119 TAAGAGGATT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
5 4 0.08
6 44 0.92
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:68633463 original size:13 final size:13
Alignment explanation
Indices: 68633441--68633473 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
68633431 AAGTGTTTGT
68633441 TTAT-TAAACTAA
1 TTATCTAAACTAA
68633453 TTATCTAAACTAA
1 TTATCTAAACTAA
*
68633466 TTAACTAA
1 TTATCTAA
68633474 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:68636709 original size:40 final size:40
Alignment explanation
Indices: 68636628--68636848 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
68636618 AAACCAAGTA
** * *
68636628 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
68636667 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
68636707 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
68636747 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
68636787 CCTTCGGGTCTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
68636827 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
68636849 CAATCCGAAT
Statistics
Matches: 167, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 26 0.16
40 141 0.84
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:68640216 original size:47 final size:46
Alignment explanation
Indices: 68640145--68640366 Score: 193
Period size: 47 Copynumber: 4.7 Consensus size: 46
68640135 TGATTTGTGC
68640145 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAACAGAGAT-AGT
*
68640193 GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACAGAGATA--
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG---CAACAGAGATAGT
* * * * * * *
68640240 GCCAGTGTAAGACGTTTCTGGGACACGTATCGGCTA-AGAG-TTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAACAGAGATAGT
* * * * *
68640284 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCA-ACAGAGAT-AGT
*
68640332 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
68640367 TAATATATCC
Statistics
Matches: 139, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 30 0.22
46 9 0.06
47 42 0.30
48 23 0.17
49 16 0.12
50 14 0.10
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAACAGAGATAGT
Found at i:68647957 original size:47 final size:46
Alignment explanation
Indices: 68647882--68648050 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 46
68647872 TATGTGAGCT
* *
68647882 AGTGTAAGACATGTTTGGCACATGCATCAGCCATATTATGAGATCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGATCC
*
68647928 AGTGTAAGACCATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCATATTATGAGATCC
* * *
68647975 AGTGTAAGACCATGTCTGGGACATGGCATC-GACAT-TGA-GACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATTATGA-GA-T-CC
*
68648023 AGCGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
68648051 GGTTACAAGA
Statistics
Matches: 110, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
45 2 0.02
46 18 0.16
47 76 0.69
48 14 0.13
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGATCC
Found at i:68648036 original size:94 final size:94
Alignment explanation
Indices: 68647931--68648140 Score: 244
Period size: 94 Copynumber: 2.2 Consensus size: 94
68647921 GAGATCCAGT
* ** *
68647931 GTAAGACCATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 GTAAGACCATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGGGTAAGACCATGTCTGGGA
*
68647996 CATGGCATCGACATTGAGACGA-GTGCTAGC
66 CATGGCATCGACA-TGAGA-GATGAGCTAGC
* ** * * *
68648026 GTAAGA-CATGTCTGGGACATGCATCGGTTACAAGATGATAGTCGGGGTAAGACCATGTCTGGGA
1 GTAAGACCATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGGGTAAGACCATGTCTGGGA
* * * *
68648090 CGTGGCATTGACATGAGATATGAGCTAGT
66 CATGGCATCGACATGAGAGATGAGCTAGC
*
68648119 GTAAGACCGTGTCTGGGACATG
1 GTAAGACCATGTCTGGGACATG
68648141 GCATTGGCAC
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
92 1 0.01
93 17 0.18
94 73 0.75
95 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (94 bp):
GTAAGACCATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGGGTAAGACCATGTCTGGGA
CATGGCATCGACATGAGAGATGAGCTAGC
Found at i:68648123 original size:47 final size:46
Alignment explanation
Indices: 68647876--68648146 Score: 166
Period size: 47 Copynumber: 5.8 Consensus size: 46
68647866 GTCACTTATG
* * * * *
68647876 TGAGCTAGTGTAAGA-CATGTTTGGCACAT-GCATCAGCCATA-TTA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-TGACATAGATA
* * * *
68647920 TGAGATCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCATA-TTA
1 TGAG--CTAGTGTAAGACCATGTCTGGGACATGGCAT-TGACATAGATA
* * * *
68647967 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA
1 T--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACATAGATA
* * *
68648015 CGAGTGCTAGCGTAAGA-CATGTCTGGGACAT-GCATCGGTTACA-AGATGA
1 TGA--GCTAGTGTAAGACCATGTCTGGGACATGGCAT---TGACATAGAT-A
* * *
68648064 T-AG-TCGGGGTAAGACCATGTCTGGGACGTGGCATTGACATGAGATA
1 TGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATTGACAT-AGATA
*
68648110 TGAGCTAGTGTAAGACCGTGTCTGGGACATGGCATTG
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTG
68648147 GCACCTTACC
Statistics
Matches: 183, Mismatches: 24, Indels: 37
0.75 0.10 0.15
Matches are distributed among these distances:
44 4 0.02
45 5 0.03
46 26 0.14
47 118 0.64
48 23 0.13
49 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACATAGATA
Found at i:68655575 original size:48 final size:48
Alignment explanation
Indices: 68655518--68655782 Score: 329
Period size: 48 Copynumber: 5.8 Consensus size: 48
68655508 TGACATGAGA
*
68655518 GCCAGTGTAAGACCATGTCTGAGACATGGCATCGACGTTGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGT
* * *
68655566 GCTAGTGTAAGACCATTTCTGGGACGTGGCATCAGA-GTTGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACGTTGATATGTGT
* * **
68655614 GCCAGTGTAAGAACATGTTTGGGACATGGCATCGGTGTTGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGT
68655662 GCCAGTGTAAG---A---C-----CATGGCATCGACGTTGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGT
* * *
68655699 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGATGATGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGT
*
68655747 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
68655783 ACTGATAGGG
Statistics
Matches: 187, Mismatches: 17, Indels: 26
0.81 0.07 0.11
Matches are distributed among these distances:
37 33 0.18
40 1 0.01
45 1 0.01
47 1 0.01
48 149 0.80
49 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGT
Found at i:68655691 original size:37 final size:37
Alignment explanation
Indices: 68655638--68655715 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
68655628 ATGTTTGGGA
**
68655638 CATGGCATCGGTGTTGATATGTGTGCCAGTGTAAGAC
1 CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGAC
68655675 CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGAC
1 CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGAC
68655712 CATG
1 CATG
68655716 TTTGGGACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGAC
Found at i:68655705 original size:85 final size:85
Alignment explanation
Indices: 68655592--68655763 Score: 301
Period size: 85 Copynumber: 2.0 Consensus size: 85
68655582 TTCTGGGACG
* *
68655592 TGGCATCAGAGTTGATATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGGTGTTGATA
1 TGGCATCAGAGTTGATATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGATGATGATA
68655657 TGTGTGCCAGTGTAAGACCA
66 TGTGTGCCAGTGTAAGACCA
*
68655677 TGGCATC-GACGTTGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGATGATGAT
1 TGGCATCAGA-GTTGATATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGATGATGAT
68655741 ATGTGTGCCAGTGTAAGACCA
65 ATGTGTGCCAGTGTAAGACCA
68655762 TG
1 TG
68655764 TTTGGGACAT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
84 2 0.02
85 81 0.98
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.29
Consensus pattern (85 bp):
TGGCATCAGAGTTGATATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGATGATGATA
TGTGTGCCAGTGTAAGACCA
Found at i:68655789 original size:133 final size:133
Alignment explanation
Indices: 68655542--68655789 Score: 392
Period size: 133 Copynumber: 1.9 Consensus size: 133
68655532 ATGTCTGAGA
* * *
68655542 CATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATTTCTGGGACGTGGCATCAGAGTTGA
1 CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGACCATTTCTGGGACATGGCATCAGAGATGA
****
68655607 TATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGGTGTTGATATGTGTGCCAGTGTAA
66 TATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGACACTGATATGTGTGCCAGTGTAA
68655672 GAC
131 GAC
68655675 CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGACCATGTT-TGGGACATGGCATC-GATGAT
1 CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGACCAT-TTCTGGGACATGGCATCAGA-GAT
*
68655738 GATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACACTGATA
64 GATATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGACACTGATA
68655790 GGGATATCGC
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
132 2 0.02
133 101 0.96
134 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (133 bp):
CATGGCATCGACGTTGATATGTGTGCCAGTGTAAGACCATTTCTGGGACATGGCATCAGAGATGA
TATGTGTGCCAGTGTAAGAACATGTTTGGGACATGGCATCGACACTGATATGTGTGCCAGTGTAA
GAC
Found at i:68662280 original size:43 final size:43
Alignment explanation
Indices: 68662190--68662302 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
68662180 CATCCGTTAT
* * *
68662190 GAACTTGGACCACTCAACGAGCTCGGATGCTCGCATCCATAAT
1 GAACTTGGACCACTCAACGAGCTCGGATGCTCACATACATAAC
* *
68662233 GAACTTGGACCACTCAACGAGCTCGGTATGC-CACATATATCAC
1 GAACTTGGACCACTCAACGAGCTCGG-ATGCTCACATACATAAC
** *
68662276 GAACTCAGACCACTCAACGAGTTCGGA
1 GAACTTGGACCACTCAACGAGCTCGGA
68662303 CTTCTTAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.02
43 56 0.92
44 4 0.07
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (43 bp):
GAACTTGGACCACTCAACGAGCTCGGATGCTCACATACATAAC
Found at i:68666239 original size:86 final size:85
Alignment explanation
Indices: 68666086--68666243 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
68666076 AGCTTGTTCA
** * *
68666086 ATGCCAACGTCCCAGACGTGGTCTTACATATAACCACATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAACGTCCCAGACACGATCTTACATATAACCACAAATCGATGCCACTATCCCAGACAGGGT
68666151 CTTACACAAACTCATATATG
66 CTTACACAAACTCATATATG
* * * *
68666171 ATGCCAATGTCCCAGACACGATCTTACATGTAAATCACAAATCGATGCCAAC-GTCCCAGAC-GT
1 ATGCCAACGTCCCAGACACGATCTTACATAT-AACCACAAATCGATGCC-ACTATCCCAGACAG-
68666234 GGTCTTACAC
63 GGTCTTACAC
68666244 GAAATCACAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 27 0.44
86 33 0.53
87 2 0.03
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.23
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACACGATCTTACATATAACCACAAATCGATGCCACTATCCCAGACAGGGT
CTTACACAAACTCATATATG
Found at i:68666910 original size:13 final size:13
Alignment explanation
Indices: 68666892--68666916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68666882 ACAAACAATA
68666892 AAATTTTCACACG
1 AAATTTTCACACG
68666905 AAATTTTCACAC
1 AAATTTTCACAC
68666917 ATATCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:68675109 original size:40 final size:40
Alignment explanation
Indices: 68675049--68675139 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
68675039 CTTGTTATCC
** *
68675049 CACACTTAGTGCCTCATATAGTTGAAGCTATTCCAATTCA
1 CACACTTAGTGCCTCATATAGCCGAAGCTATTCCAAATCA
* * *
68675089 CACACTTAGTG-CTACTTATAGCCGAAGCTATTTCAAATCG
1 CACACTTAGTGCCT-CATATAGCCGAAGCTATTCCAAATCA
*
68675129 CACCCTTAGTG
1 CACACTTAGTG
68675140 TCGAACATAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (40 bp):
CACACTTAGTGCCTCATATAGCCGAAGCTATTCCAAATCA
Found at i:68679218 original size:20 final size:20
Alignment explanation
Indices: 68679159--68679221 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
68679149 GACACAAACA
*
68679159 TGTCCCAAAGCACACGGGCA
1 TGTCCCAAAGCACACGGGCG
*
68679179 TGTCCCAAAGCACGCGGGCG
1 TGTCCCAAAGCACACGGGCG
*
68679199 TGTCCCAAAGCACACAGGCG
1 TGTCCCAAAGCACACGGGCG
68679219 TGT
1 TGT
68679222 GCATTGCCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.25, C:0.33, G:0.29, T:0.13
Consensus pattern (20 bp):
TGTCCCAAAGCACACGGGCG
Found at i:68684594 original size:49 final size:49
Alignment explanation
Indices: 68684516--68684760 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
68684506 TAGCCAAAGC
* * * *
68684516 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
68684565 TATCCAGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
68684615 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
68684666 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
68684715 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCCGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGCGACC
68684761 TCACAATAGA
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 82 0.49
50 46 0.28
51 38 0.23
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCCGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:68684697 original size:101 final size:98
Alignment explanation
Indices: 68684529--68684760 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
68684519 CTGGTACGCA
* * * *
68684529 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACGCGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACGCATAGTAGCCTGCACTTA
* *
68684594 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* **
68684628 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCAGTACGCATAGTAGCCTGCACT
* ** *
68684693 TAGTACTACACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
68684728 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
68684761 TCACAATAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 29 0.25
100 46 0.39
101 42 0.36
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACGCATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:68691952 original size:29 final size:29
Alignment explanation
Indices: 68691893--68691950 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
68691883 CAAATAGCCG
68691893 AAGCTAGTTAAATAGCACACTTAGTGCCC
1 AAGCTAGTTAAATAGCACACTTAGTGCCC
68691922 AAGCTAGTTTAAATCA-CACACTTAGTGCC
1 AAGCTAG-TTAAAT-AGCACACTTAGTGCC
68691951 AAAACTTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 7 0.26
30 19 0.70
31 1 0.04
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATAGCACACTTAGTGCCC
Found at i:68696609 original size:39 final size:39
Alignment explanation
Indices: 68696565--68696641 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
68696555 ATGCAAGACA
*
68696565 CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68696604 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGT
68696642 AAAACAAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68697759 original size:47 final size:47
Alignment explanation
Indices: 68697689--68698035 Score: 505
Period size: 47 Copynumber: 7.4 Consensus size: 47
68697679 CCCTTCGGGA
* * *
68697689 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
68697736 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * * *
68697783 CTTATCTCATATATACACATTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
68697830 CTTATCACATATATACACTTTCACATTCACCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
68697877 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
68697924 CTTATCACATATACACACTTTCGCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
68697971 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
68698018 CTTATCACATATACACAC
1 CTTATCACATATATACAC
68698036 CTTGTACATC
Statistics
Matches: 267, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:68697951 original size:141 final size:141
Alignment explanation
Indices: 68697689--68698038 Score: 556
Period size: 141 Copynumber: 2.5 Consensus size: 141
68697679 CCCTTCGGGA
* *
68697689 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATACAC
* * * *
68697754 CTTCACATCCATCACATCGGCCATTAGGTCTTATCTCATATATACACATTCACATTCATCACGTT
66 CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATACACACATTCACATTCATCACATT
68697819 GGCCACTCGGC
131 GGCCACTCGGC
*
68697830 CTTATCACATATATACACTTTCACATTCACCACATTGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATACAC
* * * * *
68697895 TTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATACACACTTTCGCATTCATCACATT
66 CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATACACACATTCACATTCATCACATT
*
68697960 GGCCATTCGGC
131 GGCCACTCGGC
** *
68697971 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACATATACACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATACAC
68698036 CTT
66 CTT
68698039 GTACATCAAT
Statistics
Matches: 191, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
141 191 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATACAC
CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATACACACATTCACATTCATCACATT
GGCCACTCGGC
Found at i:68702030 original size:40 final size:40
Alignment explanation
Indices: 68701975--68702326 Score: 562
Period size: 40 Copynumber: 8.8 Consensus size: 40
68701965 ATTTTGTCCA
*
68701975 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
68702014 AGCACGAATGCTCTTCGGGACTTAGCCTGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
68702054 AGCACGAATGCTCTTCGGGACTTAGCCCGAATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
68702094 AGCACGAATGCTCTTCGGGACTTAGCCTGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
68702134 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
68702174 AGCACGAATGCTCTTCGGAACTTAGCCCGAATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
68702214 AGCACGAACGCTCTTCGGAACTTTGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
68702254 AGCACGGATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
68702294 AGCTCAAATGCTCTTCGGGACTTAGCCCGGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
68702327 TAACATACTG
Statistics
Matches: 287, Mismatches: 25, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 11 0.04
40 276 0.96
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:68704231 original size:47 final size:47
Alignment explanation
Indices: 68704168--68704514 Score: 498
Period size: 47 Copynumber: 7.4 Consensus size: 47
68704158 CCCTTCGGGA
* *
68704168 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68704215 CTTATCACATATATACACCTTT-ACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68704262 CTTATCTCATATATACACATTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
68704309 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68704356 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68704403 CTTATCACATATACACACTTTCGCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * **
68704450 CTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68704497 CTTATCACATATACACAC
1 CTTATCACATATATACAC
68704515 CTTGTACATC
Statistics
Matches: 267, Mismatches: 31, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
46 3 0.01
47 260 0.97
48 4 0.01
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:68718092 original size:41 final size:40
Alignment explanation
Indices: 68717950--68718094 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
68717940 CTCGCACAAG
* * * * * *
68717950 GCCTTCGGGTCTTAACCCGGATATGGTCACTATCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
68717990 GCCTTCGAGACTTAGCCCGGAAATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
** * *
68718030 GCCTTC-GGATCTTAGTTCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
68718071 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
68718095 CATTCGAGTA
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 54 0.64
41 26 0.31
42 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:68725994 original size:39 final size:40
Alignment explanation
Indices: 68725949--68726059 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
68725939 CGGGGTTTAG
* * *
68725949 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
68725988 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
68726028 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
68726060 ATCTTAGTCT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:68726019 original size:40 final size:40
Alignment explanation
Indices: 68725972--68726116 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
68725962 CTCGCACAAG
* * * * *
68725972 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
68726012 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
68726052 GCCTTC-GGATCTTAGTCTGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
68726093 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
68726117 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:68732110 original size:31 final size:31
Alignment explanation
Indices: 68732056--68732115 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
68732046 TACAAAATAA
* *
68732056 TTATTGAATTATTCAAAATTTTTTATTTAAG
1 TTATCGAATTATTCAAAAGTTTTTATTTAAG
* *
68732087 TTATCGAATTGTTTAAAAGTTTTTATTTA
1 TTATCGAATTATTCAAAAGTTTTTATTTA
68732116 TGTCACTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.55
Consensus pattern (31 bp):
TTATCGAATTATTCAAAAGTTTTTATTTAAG
Found at i:68737354 original size:15 final size:16
Alignment explanation
Indices: 68737334--68737367 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
68737324 TGTATATATC
68737334 TTAATTTGTT-TATTT
1 TTAATTTGTTGTATTT
*
68737349 TTAATTTTTTGTATTT
1 TTAATTTGTTGTATTT
68737365 TTA
1 TTA
68737368 GAATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
TTAATTTGTTGTATTT
Found at i:68737407 original size:14 final size:14
Alignment explanation
Indices: 68737387--68737429 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
68737377 AATTTTAGTG
*
68737387 TTAATTAAATTATAG
1 TTAATTAAATTA-AA
68737402 TT-ATTAAATTAAA
1 TTAATTAAATTAAA
68737415 TTAATTAAATTAAA
1 TTAATTAAATTAAA
68737429 T
1 T
68737430 GTTGTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 21 0.81
15 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
TTAATTAAATTAAA
Found at i:68737766 original size:44 final size:44
Alignment explanation
Indices: 68737704--68737790 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
68737694 CAAGATTAAA
*
68737704 ATTTCAAAAATTTCAAAGTACAAGGACAATAATTGATCAAATTG
1 ATTTCAAAAATTTAAAAGTACAAGGACAATAATTGATCAAATTG
*
68737748 ATTTCAAAATTTTAAAAGTACAAGGACAATAATTGATCAAATT
1 ATTTCAAAAATTTAAAAGTACAAGGACAATAATTGATCAAATT
68737791 AAAATACATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (44 bp):
ATTTCAAAAATTTAAAAGTACAAGGACAATAATTGATCAAATTG
Found at i:68737805 original size:29 final size:28
Alignment explanation
Indices: 68737759--68737818 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
68737749 TTTCAAAATT
*
68737759 TTAAAAGTACAAGGACAATAATTGATCAAA
1 TTAAAAGTACAAGGACAA-AATTCA-CAAA
* *
68737789 TTAAAA-TACATGTACAAAATTCACAAA
1 TTAAAAGTACAAGGACAAAATTCACAAA
68737816 TTA
1 TTA
68737819 CGCAAAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.26
28 5 0.19
29 9 0.33
30 6 0.22
ACGTcount: A:0.53, C:0.12, G:0.08, T:0.27
Consensus pattern (28 bp):
TTAAAAGTACAAGGACAAAATTCACAAA
Found at i:68741506 original size:46 final size:46
Alignment explanation
Indices: 68741425--68741538 Score: 160
Period size: 46 Copynumber: 2.5 Consensus size: 46
68741415 ATGTCAATTC
68741425 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCG-GAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGAG-GCTGATG
* * *
68741472 CATGTCCCTGACATGTCTTACACTGGCT-TACATCTCGAGGTTGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCTGATG
68741518 CATGTCCCAGACATGTCTTAC
1 CATGTCCCAGACATGTCTTAC
68741539 TCTAGCATTC
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
45 1 0.02
46 46 0.75
47 14 0.23
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGGCTGATG
Found at i:68741554 original size:46 final size:45
Alignment explanation
Indices: 68741425--68741573 Score: 151
Period size: 46 Copynumber: 3.2 Consensus size: 45
68741415 ATGTCAATTC
68741425 CATGTCCCAGACATGGTCTTACACTG-ACTATCATCTCG-GAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGCA-T-TCATCTCGAG-GCTGATG
* *
68741472 CATGTCCCTGACATGTCTTACACTGGC-TTACATCTCGAGGTTGATG
1 CATGTCCCAGACATGTCTTACACT-GCATT-CATCTCGAGGCTGATG
* * * *
68741518 CATGTCCCAGACATGTCTTACTCTAGCATTCGTCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACT-GCATTCATCTCGAGGCTGATG
68741564 CCATGTCCCA
1 -CATGTCCCA
68741574 TATTGGTCTT
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
45 1 0.01
46 60 0.69
47 26 0.30
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGCATTCATCTCGAGGCTGATG
Found at i:68743026 original size:27 final size:27
Alignment explanation
Indices: 68742994--68743087 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 27
68742984 TAGGAAATGA
*
68742994 AATGAAATGAAAGCCTTTGTGATGAAT
1 AATGAAATGAAAGCCTTTGTGACGAAT
*
68743021 AATGAAATGAAAGCCTTTGTGGCGAAT
1 AATGAAATGAAAGCCTTTGTGACGAAT
* * *
68743048 CATGAAATGAAAGCCTTTGTGGCAAAT
1 AATGAAATGAAAGCCTTTGTGACGAAT
* *
68743075 CATGAAATTAAAG
1 AATGAAATGAAAG
68743088 GGAATGCCCT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (27 bp):
AATGAAATGAAAGCCTTTGTGACGAAT
Found at i:68760174 original size:46 final size:46
Alignment explanation
Indices: 68760124--68760299 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
68760114 TGGTTGAGCA
*
68760124 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
68760170 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
68760217 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68760263 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68760300 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68760280 original size:93 final size:93
Alignment explanation
Indices: 68760121--68760291 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68760111 GGATGGTTGA
* *
68760121 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68760186 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
68760214 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68760279 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68760292 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:68763256 original size:30 final size:29
Alignment explanation
Indices: 68763211--68763292 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 29
68763201 CATAGTATCG
* *
68763211 TATCTTGGGTTTCTTTATCTCGGATCTCTT
1 TATCTTGGATTTCTTTAT-TCGGATCTCTC
* *
68763241 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATT-CGGATCTCTC
68763271 TATCTTGGATTTCTTTATTCGG
1 TATCTTGGATTTCTTTATTCGG
68763293 TTTTCTTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
29 5 0.11
30 39 0.87
31 1 0.02
ACGTcount: A:0.11, C:0.18, G:0.17, T:0.54
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATCTCTC
Found at i:68763268 original size:15 final size:15
Alignment explanation
Indices: 68763220--68763299 Score: 67
Period size: 15 Copynumber: 5.4 Consensus size: 15
68763210 GTATCTTGGG
68763220 TTTCTTTA-TCTCGGA
1 TTTCTTTATTC-CGGA
* *
68763235 TCTCTTTATTCTGGA
1 TTTCTTTATTCCGGA
*
68763250 TTTCTTTATTCCGGG
1 TTTCTTTATTCCGGA
* *
68763265 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-CGGA
*
68763280 TTTCTTTATT-CGGT
1 TTTCTTTATTCCGGA
68763294 TTTCTT
1 TTTCTT
68763300 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
14 10 0.20
15 38 0.75
16 3 0.06
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCCGGA
Found at i:68765743 original size:46 final size:48
Alignment explanation
Indices: 68765692--68765822 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 48
68765682 ATGGTTGAGC
*
68765692 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * *
68765739 -TCCGAACTCGTTGAGTTGAGTCTGAGTT--C-GA-GAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-AGG
*
68765784 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68765823 GCGGGTTACA
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 1 0.01
45 2 0.03
46 27 0.40
47 26 0.38
49 1 0.01
50 2 0.03
51 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:68773658 original size:40 final size:40
Alignment explanation
Indices: 68773467--68773658 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
68773457 TCGAATGATG
* * * * *
68773467 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * * *
68773507 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
68773547 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
68773586 TTCGGGTTAAGTCCCGAAGGCATTTGTTCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* * *
68773627 -CCGGGCTATGTCCCGAAGACATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
68773659 AGCTATATCC
Statistics
Matches: 126, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
39 33 0.26
40 83 0.66
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:68773673 original size:79 final size:79
Alignment explanation
Indices: 68773520--68773684 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
68773510 GGACTAAGAT
* * **
68773520 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGACATTGGAACGAGTTACTAA
* *
68773585 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* * * *
68773599 CCGAAGGCATTTGTTCGAGTTACT-ATAACCGGGCTATGTCCCGAAGACATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGACATTGGAACGAGTTA-C
* *
68773662 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
68773678 CCGAAGG
1 CCGAAGG
68773685 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.69
80 20 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGACATTGGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:68784157 original size:27 final size:27
Alignment explanation
Indices: 68784123--68784401 Score: 181
Period size: 27 Copynumber: 10.4 Consensus size: 27
68784113 TTACCCTATA
68784123 GGGG-TATTTTCGTAATTTTACAAACT
1 GGGGATATTTTCGTAATTTTACAAACT
*
68784149 GGGGATA-TTTCAGTAATTTTAAAAACT
1 GGGGATATTTTC-GTAATTTTACAAACT
*
68784176 -GAGAGTA-TTTCGATAATTTTACAAACT
1 GGGGA-TATTTTCG-TAATTTTACAAACT
* * *
68784203 GGGGGTA-TTTCGGTATTTTTACAAACC
1 GGGGATATTTTC-GTAATTTTACAAACT
** * *
68784230 AAGCATA-TTTCGGTAATTTTACAAGCT
1 GGGGATATTTTC-GTAATTTTACAAACT
*
68784257 GGGGGTATTTTAC-TAATTTTACAAA-T
1 GGGGATATTTT-CGTAATTTTACAAACT
*
68784283 CGAGGG-TATTTTGGTAATTTTACAAA-T
1 -G-GGGATATTTTCGTAATTTTACAAACT
** *
68784310 TAGGAGTA-TTTCAGTAATTTTACAAACAA
1 GGGGA-TATTTTC-GTAATTTTACAAAC-T
* *
68784339 GGGGA-ATTTTAGTAATTTTATAAACT
1 GGGGATATTTTCGTAATTTTACAAACT
*
68784365 GAGGG-TATTTT-GATAATTTTACAAACC
1 G-GGGATATTTTCG-TAATTTTACAAACT
*
68784392 GGGGGTATTT
1 GGGGATATTT
68784402 CAGTTGTAAC
Statistics
Matches: 201, Mismatches: 31, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
25 2 0.01
26 21 0.10
27 162 0.81
28 12 0.06
29 4 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGGATATTTTCGTAATTTTACAAACT
Found at i:68784184 original size:54 final size:54
Alignment explanation
Indices: 68784126--68784390 Score: 222
Period size: 54 Copynumber: 4.9 Consensus size: 54
68784116 CCCTATAGGG
*
68784126 GTATTTTCGTAATTTTACAAACTGGGGATATTTCAGTAATTTTAAAAACTGAGA
1 GTATTTTCGTAATTTTACAAACTGGGGATATTTCAGTAATTTTACAAACTGAGA
* * * *
68784180 GTA-TTTCGATAATTTTACAAACTGGGGGTATTTCGGTATTTTTACAAAC-CA-A
1 GTATTTTCG-TAATTTTACAAACTGGGGATATTTCAGTAATTTTACAAACTGAGA
* * * * * *
68784232 GCATATTTCGGTAATTTTACAAGCTGGGGGTATTTTACTAATTTTACAAA-TCGAGG
1 GTAT-TTTC-GTAATTTTACAAACTGGGGATATTTCAGTAATTTTACAAACT-GAGA
* ** * *
68784288 GTATTTTGGTAATTTTACAAA-TTAGGAGTATTTCAGTAATTTTACAAAC-AAGGG
1 GTATTTTCGTAATTTTACAAACTGGGGA-TATTTCAGTAATTTTACAAACTGA-GA
* * * *
68784342 GAATTTTAGTAATTTTATAAACTGAGGG-TATTT-TGATAATTTTACAAAC
1 GTATTTTCGTAATTTTACAAACTG-GGGATATTTCAG-TAATTTTACAAAC
68784391 CGGGGGTATT
Statistics
Matches: 170, Mismatches: 28, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
52 3 0.02
53 11 0.06
54 145 0.85
55 6 0.04
56 5 0.03
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
GTATTTTCGTAATTTTACAAACTGGGGATATTTCAGTAATTTTACAAACTGAGA
Found at i:68784223 original size:81 final size:81
Alignment explanation
Indices: 68784124--68784405 Score: 277
Period size: 81 Copynumber: 3.5 Consensus size: 81
68784114 TACCCTATAG
* * * * *
68784124 GGGTATTTTC-GTAATTTTACAAACTGGGGATATTTCAGTAATTTTAAAAACTGAGAGTATTTCG
1 GGGTA-TTTCGGTAATTTTACAAACCGAGGATATTTCAGTAATTTTACAAACTGAGGGTATTT-T
*
68784188 A-TAATTTTACAAACTGG
64 ACTAATTTTACAAACTGA
* * * * * *
68784205 GGGTATTTCGGTATTTTTACAAACCAAGCATATTTCGGTAATTTTACAAGCTGGGGGTATTTTAC
1 GGGTATTTCGGTAATTTTACAAACCGAGGATATTTCAGTAATTTTACAAACTGAGGGTATTTTAC
68784270 TAATTTTACAAA-TCGA
66 TAATTTTACAAACT-GA
* ** * *
68784286 GGGTATTTTGGTAATTTTACAAA-TTAGGAGTATTTCAGTAATTTTACAAAC-AAGGGGAATTTT
1 GGGTATTTCGGTAATTTTACAAACCGAGGA-TATTTCAGTAATTTTACAAACTGA-GGGTATTTT
* *
68784349 AGTAATTTTATAAACTGA
64 ACTAATTTTACAAACTGA
* * * *
68784367 GGGTATTTTGATAATTTTACAAACCGGGGGTATTTCAGT
1 GGGTATTTCGGTAATTTTACAAACCGAGGATATTTCAGT
68784406 TGTAACGCCC
Statistics
Matches: 165, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
80 9 0.05
81 153 0.93
82 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAACCGAGGATATTTCAGTAATTTTACAAACTGAGGGTATTTTAC
TAATTTTACAAACTGA
Found at i:68793628 original size:40 final size:39
Alignment explanation
Indices: 68793570--68793648 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 39
68793560 ACTTAATTCA
* * * *
68793570 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCT-AACCCAGATACAATC
*
68793610 CCAGCATGAAGCCAGCGGGTCTCTAACCCAGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAACCCAGATACAATC
68793649 TCCGCACAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 14 0.41
40 20 0.59
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.18
Consensus pattern (39 bp):
CCAGCATGAAGCCAGCGGGACTCTAACCCAGATACAATC
Found at i:68793825 original size:47 final size:45
Alignment explanation
Indices: 68793723--68793831 Score: 130
Period size: 47 Copynumber: 2.4 Consensus size: 45
68793713 TGCACACTTT
* * *
68793723 TCACAATTGGTCATTCGGCCTTGTCACATATTCACTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
*
68793769 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTACACATAT-A
*
68793816 TCACGTTGGCCATTCG
1 TCACATTGGCCATTCG
68793832 ATCTTAAGCC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 24 0.44
46 5 0.09
47 26 0.47
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
Found at i:68800717 original size:24 final size:25
Alignment explanation
Indices: 68800690--68800755 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 25
68800680 TCCTTAAATC
* *
68800690 TCTCCATAAATCAT-TCCTTGATTT
1 TCTCCATAAATCATCTCCATGATGT
68800714 TCTCC-TAATATC-TCTCCATGATGT
1 TCTCCATAA-ATCATCTCCATGATGT
*
68800738 ACTCCATAAATCA-CTCCA
1 TCTCCATAAATCATCTCCA
68800756 ACTTCCCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
23 4 0.11
24 28 0.80
25 3 0.09
ACGTcount: A:0.27, C:0.30, G:0.05, T:0.38
Consensus pattern (25 bp):
TCTCCATAAATCATCTCCATGATGT
Found at i:68804523 original size:49 final size:49
Alignment explanation
Indices: 68804456--68804701 Score: 224
Period size: 50 Copynumber: 4.9 Consensus size: 49
68804446 GTAACCAAAG
* *
68804456 CTATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* * * * *
68804505 CAATCTAGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAA
1 CTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA
* * ** *
68804555 GTTGTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 -CTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AA
* ** * *
68804606 CTATCTGGTACATGTAGTAGCTTGCACTTAGTACTACACACGTGACCTACAA
1 CTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-C--CAA
* * * * *
68804658 CCATCTTA-AAAACATAGTAGCCTACACATAGTACTACACATGTG
1 CTATC-TAGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
68804702 TTCTCACAAT
Statistics
Matches: 155, Mismatches: 35, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
49 39 0.25
50 41 0.26
51 39 0.25
52 34 0.22
53 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:68807455 original size:15 final size:15
Alignment explanation
Indices: 68807414--68807458 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
68807404 AACCAGGATT
* *
68807414 AAGAAGTCCAAAATA
1 AAGAAATCCAAGATA
*
68807429 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
68807444 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
68807459 CAATATCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.58, C:0.13, G:0.16, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:68813528 original size:61 final size:61
Alignment explanation
Indices: 68813379--68813500 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
68813369 GTTTTCAGTT
* * * *
68813379 GCAATGTGCAAATATGACTCAAGTAAATGATGTTTCCATCACTAAGCTCTTATGAAGTTAC
1 GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
68813440 GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
1 GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
68813501 TTGTGTATGT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30
Consensus pattern (61 bp):
GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
Found at i:68819465 original size:43 final size:43
Alignment explanation
Indices: 68819311--68819512 Score: 123
Period size: 43 Copynumber: 4.7 Consensus size: 43
68819301 ATATATCGAA
* *
68819311 CAATGCCAACGTCCCAGACGT-CATCTTACATGGT-GTCTCATAT
1 CAATGCCAACGTCCCAGACGTGC-TCTTACAT-GTAATCACATAT
* * *
68819354 CAATGCC-AC-TACCCTAGACAG-GGTCGTACATG-AATCAAATAT
1 CAATGCCAACGT-CCC-AGAC-GTGCTCTTACATGTAATCACATAT
* * * * *
68819396 -GATGCCGAA-GTCCTAGACATGGTCTTACTTGTAATCACATAT
1 CAATGCC-AACGTCCCAGACGTGCTCTTACATGTAATCACATAT
* *
68819438 CAATGCCAACGTCCCAGACGTGCTCTTACATGAAAACACATATAT
1 CAATGCCAACGTCCCAGACGTGCTCTTACATGTAATCAC--ATAT
* * * * *
68819483 CGATGCTAACATCCCAGATGTGGTCTTACA
1 CAATGCCAACGTCCCAGACGTGCTCTTACA
68819513 CGAAAACACA
Statistics
Matches: 122, Mismatches: 23, Indels: 26
0.71 0.13 0.15
Matches are distributed among these distances:
41 19 0.16
42 25 0.20
43 48 0.39
44 1 0.01
45 29 0.24
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGCTCTTACATGTAATCACATAT
Found at i:68819500 original size:45 final size:45
Alignment explanation
Indices: 68819434--68819524 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
68819424 TTGTAATCAC
* *
68819434 ATATCAATGCCAACGTCCCAGACGTGCTCTTACATGAAAACACAT
1 ATATCAATGCCAACATCCCAGACGTGCTCTTACACGAAAACACAT
* * * *
68819479 ATATCGATGCTAACATCCCAGATGTGGTCTTACACGAAAACACAT
1 ATATCAATGCCAACATCCCAGACGTGCTCTTACACGAAAACACAT
68819524 A
1 A
68819525 GCATAATCCT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.23
Consensus pattern (45 bp):
ATATCAATGCCAACATCCCAGACGTGCTCTTACACGAAAACACAT
Found at i:68820097 original size:15 final size:15
Alignment explanation
Indices: 68820073--68820104 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
68820063 ATCAAAAATT
68820073 TCAATACAAAACATA
1 TCAATACAAAACATA
*
68820088 TCAATCCAAAACATA
1 TCAATACAAAACATA
68820103 TC
1 TC
68820105 TTCCATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (15 bp):
TCAATACAAAACATA
Found at i:68822845 original size:23 final size:24
Alignment explanation
Indices: 68822801--68822850 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
68822791 TCTCTTACTG
**
68822801 TACTGTTCATATGATTGTTTCG-T
1 TACTGTTCATATGAAAGTTTCGAT
68822824 TACT-TTCATATGAAAGTGTTCGAT
1 TACTGTTCATATGAAAGT-TTCGAT
68822848 TAC
1 TAC
68822851 ATAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 11 0.48
23 8 0.35
24 4 0.17
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (24 bp):
TACTGTTCATATGAAAGTTTCGAT
Found at i:68823731 original size:39 final size:40
Alignment explanation
Indices: 68823686--68823845 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
68823676 GCTCCTCGTT
* * *
68823686 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
68823726 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
68823765 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
68823805 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
68823845 C
1 C
68823846 GCCTTCGGAT
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.32
40 69 0.64
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:68825679 original size:46 final size:46
Alignment explanation
Indices: 68825612--68825787 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
68825602 TGTAACCCGC
* *
68825612 CCATAAGTGAACTCGGACTCAACTCAACAAGATCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGACGTTCGCAT
* * * * *
68825658 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGACG-TTCGCAT
* *** * * *
68825704 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGATCGGACGTTCGCAT
*
68825751 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGA
68825788 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGACGTTCGCAT
Found at i:68825748 original size:93 final size:93
Alignment explanation
Indices: 68825620--68825791 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68825610 GCCCATAAGT
*
68825620 GAACTCGGACTCAACTCAACAAGATCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGATCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68825685 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
** * *
68825713 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGATCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68825778 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
68825792 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGATCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:68836152 original size:46 final size:46
Alignment explanation
Indices: 68836102--68836273 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
68836092 TGGTTGAGAA
* *
68836102 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68836148 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68836195 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
68836241 CCCGAGCTCGTTGAGTTCAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
68836274 CGGGGTGGGT
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68836263 original size:93 final size:93
Alignment explanation
Indices: 68836101--68836269 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
68836091 ATGGTTGAGA
* * * *
68836101 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTC
68836166 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* * *
68836194 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGTTC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTC
68836259 AGTCCGAGTTC
66 AGTCCGAGTTC
68836270 ACTTCGGGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTC
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:68836536 original size:19 final size:20
Alignment explanation
Indices: 68836499--68836536 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68836489 ATAAAGTGGT
68836499 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68836519 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68836537 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68843721 original size:46 final size:46
Alignment explanation
Indices: 68843671--68843841 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
68843661 TGGTTGAGCA
*
68843671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68843717 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
68843763 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
68843809 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68843842 GGGCGGGTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
44 3 0.03
45 38 0.36
46 43 0.41
47 7 0.07
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68843834 original size:92 final size:92
Alignment explanation
Indices: 68843668--68843836 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
68843658 GGATGGTTGA
*
68843668 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
68843733 TGAGTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCGAGTTCGTGAGATGTAACTAG
* * *
68843760 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
68843824 TGAGTCCGAGTTC
66 TGAGT-CGAGTTC
68843837 ACTTAGGGCG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 19 0.26
92 53 0.74
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:68844099 original size:19 final size:20
Alignment explanation
Indices: 68844062--68844099 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68844052 ATAAGGTGGT
68844062 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68844082 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68844100 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68862045 original size:45 final size:45
Alignment explanation
Indices: 68861981--68862068 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
68861971 ATTGTGCTAC
* *
68861981 GTGTTTTCATGCAAGACCACATCTGGGACGTTGGCATCGATATAT
1 GTGTTTTCATGCAAGACCACATCTGGGACATTGGCACCGATATAT
* *
68862026 GTGTTTTCGTGTAAGACCACATCTGGGACATTGGCACCGATAT
1 GTGTTTTCATGCAAGACCACATCTGGGACATTGGCACCGATAT
68862069 GTGGTTACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (45 bp):
GTGTTTTCATGCAAGACCACATCTGGGACATTGGCACCGATATAT
Found at i:68862083 original size:43 final size:44
Alignment explanation
Indices: 68861993--68862104 Score: 127
Period size: 43 Copynumber: 2.5 Consensus size: 44
68861983 GTTTTCATGC
* * * * *
68861993 AAGACCACATCTGGGACGTTGGCATCGATATATGTGTTTTCGTGT
1 AAGACCACATCTGGGACATTGGCACCGA-ATATGTGGTTACGAGT
68862038 AAGACCACATCTGGGACATTGGCACCG-ATATGTGGTTACGAGT
1 AAGACCACATCTGGGACATTGGCACCGAATATGTGGTTACGAGT
* ** *
68862081 AAGACTATGTCTGGGACATCGGCA
1 AAGACCACATCTGGGACATTGGCA
68862105 TCGTACTTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 33 0.57
45 25 0.43
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (44 bp):
AAGACCACATCTGGGACATTGGCACCGAATATGTGGTTACGAGT
Found at i:68863257 original size:19 final size:20
Alignment explanation
Indices: 68863233--68863270 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68863223 GGTACCACCA
68863233 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68863252 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68863271 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68863663 original size:93 final size:93
Alignment explanation
Indices: 68863500--68863670 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
68863490 GCCCCTAAGT
* * * *
68863500 GAACTCGGACTGAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
68863565 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
68863593 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
68863658 TGAGTTCGGATGC
66 CGAGTTCGGATGC
68863671 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68863667 original size:46 final size:46
Alignment explanation
Indices: 68863495--68863667 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
68863485 AACCCGCCCC
* * * * *
68863495 TAAGTGAACTCGGACTGAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
68863541 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
68863589 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
68863634 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68863668 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.55
47 27 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:68864123 original size:30 final size:30
Alignment explanation
Indices: 68864089--68864149 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
68864079 CATTTAATAC
68864089 AAACTTTAAAAAAATTACACTTTTGCCCCT
1 AAACTTTAAAAAAATTACACTTTTGCCCCT
*** *
68864119 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTAAAAAAATTACACTTTTGCCCCT
68864149 A
1 A
68864150 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (30 bp):
AAACTTTAAAAAAATTACACTTTTGCCCCT
Found at i:68884440 original size:27 final size:27
Alignment explanation
Indices: 68884410--68884587 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
68884400 ATATTGAGTC
* *
68884410 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68884437 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68884464 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68884492 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
68884519 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * * *
68884546 CGCAAACTTAGTGCAACGTAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
68884573 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68884588 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68887063 original size:47 final size:47
Alignment explanation
Indices: 68887009--68887202 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
68886999 TTAGGATTTT
** * *
68887009 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68887056 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
68887103 ATATGATGAATGTGAGCATGCATATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * **
68887150 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCTGAATGGATA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68887197 ATGTGA
1 ATGTGA
68887203 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68887232 original size:48 final size:47
Alignment explanation
Indices: 68887173--68887308 Score: 191
Period size: 50 Copynumber: 2.8 Consensus size: 47
68887163 GAACATGCAT
*
68887173 ATATGTGGTAAAGCTGAATGGATAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATGC
* *
68887221 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGATATGC
*
68887271 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTA
68887309 GGCGATGTGC
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
47 1 0.01
48 32 0.41
49 4 0.05
50 41 0.52
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (47 bp):
ATATGTGGTAAAGCCGAATGGTAATGTGAAATATGTATGAGATATGC
Found at i:68887323 original size:50 final size:49
Alignment explanation
Indices: 68887167--68887329 Score: 181
Period size: 50 Copynumber: 3.3 Consensus size: 49
68887157 GAATATGAAC
* *
68887167 ATGCATATATGTGGTAAAGCTGAATGGATAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGAT
*
68887217 ATGC--ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGAT
* * *
68887267 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGAT
*
68887315 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
68887330 CCGAACGACC
Statistics
Matches: 97, Mismatches: 7, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
47 1 0.01
48 37 0.38
49 4 0.04
50 49 0.51
51 6 0.06
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
ATGCGTATATGTGGTAAAGCCGAATGGTAATGTGAAATATGTATGAGAT
Found at i:68887563 original size:37 final size:37
Alignment explanation
Indices: 68887455--68887563 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
68887445 GGAAATATAT
*
68887455 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
68887492 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
68887529 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
68887564 CGTCTCAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:68889599 original size:28 final size:28
Alignment explanation
Indices: 68889566--68889685 Score: 134
Period size: 28 Copynumber: 4.2 Consensus size: 28
68889556 ATTGCATAAC
*
68889566 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * * *
68889594 TATGAAAGTGATTGGGCTTTATGGGGCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
68889622 TATGAATGTGATTGGG-CTCGATGGGCCG
1 TATGAATGTGATTGGGCCT-GATGGGCCA
* *
68889650 TATGAATGAGATTGGGCCTAAATGGGCCA
1 TATGAATGTGATTGGGCCT-GATGGGCCA
*
68889679 AATGAAT
1 TATGAAT
68889686 AAATATGGAT
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
27 1 0.01
28 59 0.79
29 15 0.20
ACGTcount: A:0.26, C:0.12, G:0.34, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:68895501 original size:27 final size:27
Alignment explanation
Indices: 68895470--68895647 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68895460 TAAATTGTAC
68895470 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68895497 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68895523 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68895551 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68895579 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68895606 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68895633 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68895648 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68895584 original size:82 final size:81
Alignment explanation
Indices: 68895471--68895626 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68895461 AAATTGTACA
* *
68895471 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68895535 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68895552 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68895617 TGCGAGTTGA
65 TGCGAATTGA
68895627 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68895638 original size:82 final size:81
Alignment explanation
Indices: 68895467--68895647 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68895457 GATTAAATTG
* *
68895467 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68895532 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68895548 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68895612 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68895630 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68895648 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68898598 original size:15 final size:15
Alignment explanation
Indices: 68898575--68898606 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
68898565 ATAGAAAAAC
68898575 CCAGAATAAAGAAAT
1 CCAGAATAAAGAAAT
*
68898590 CCAGCATAAAGAAAT
1 CCAGAATAAAGAAAT
68898605 CC
1 CC
68898607 CAGTTAGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.22, G:0.12, T:0.12
Consensus pattern (15 bp):
CCAGAATAAAGAAAT
Found at i:68902273 original size:59 final size:59
Alignment explanation
Indices: 68902190--68902363 Score: 260
Period size: 59 Copynumber: 2.9 Consensus size: 59
68902180 CATAGATAAA
* *
68902190 ATAATCACATGCCTCTCAATGGGGCTACTCAAAAGCACTCGGACCCTAGCATTTATCAC
1 ATAATCACATGCCTCTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGTATCAC
* * *
68902249 ATATTCACATGCCTCTGAACGGGGCTACTCAAAAGCACTCGGACCTTAGCATGTATCAC
1 ATAATCACATGCCTCTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGTATCAC
* * *
68902308 ATAATCACATGCCTTTCAACGAGGCTACCCAAAAGCA-TCCGGACCCTAGCATGTAT
1 ATAATCACATGCCTCTCAACGGGGCTACTCAAAAGCACT-CGGACCCTAGCATGTAT
68902364 TAGGTATCAA
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
58 1 0.01
59 102 0.99
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (59 bp):
ATAATCACATGCCTCTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGTATCAC
Found at i:68905364 original size:46 final size:46
Alignment explanation
Indices: 68905278--68905397 Score: 118
Period size: 46 Copynumber: 2.6 Consensus size: 46
68905268 TGTGTGAGCC
* * *
68905278 AGTGTAAAACCATGAT-TTGGACATGGCATCGGCATTGAGACG-AGGGCT
1 AGTGTAAAA-CATG-TCTAGGACAT-GCATCGGCATCGAGACGTA-AGCT
* * *
68905326 AGTGTAAAATATGTCTAGGACATGTATCGGCCTCGAGACGTAAGCT
1 AGTGTAAAACATGTCTAGGACATGCATCGGCATCGAGACGTAAGCT
* *
68905372 GGTGTAAGACATGTCTAGGACATGCA
1 AGTGTAAAACATGTCTAGGACATGCA
68905398 CCGACTATGA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
46 40 0.67
47 11 0.18
48 9 0.15
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAAACATGTCTAGGACATGCATCGGCATCGAGACGTAAGCT
Found at i:68905490 original size:47 final size:48
Alignment explanation
Indices: 68905373--68905494 Score: 153
Period size: 47 Copynumber: 2.6 Consensus size: 48
68905363 ACGTAAGCTG
* * * *
68905373 GTGTAAGA-CATGTCTAGGACAT-GCACCGACTATGAGATGATAGTCA
1 GTGTAAGACCATGTTTAGGACATGGCATCAACTATGAGATGATAGCCA
*
68905419 GTGTAAGACCATGTTTGGGACATGGCATCAACT-TGAGAT-ATGAGCCA
1 GTGTAAGACCATGTTTAGGACATGGCATCAACTATGAGATGAT-AGCCA
*
68905466 GTGTAAGACCGTGTTTAGGACATGGCATC
1 GTGTAAGACCATGTTTAGGACATGGCATC
68905495 GACATTTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 10 0.15
47 49 0.74
48 7 0.11
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTTTAGGACATGGCATCAACTATGAGATGATAGCCA
Found at i:68909131 original size:39 final size:39
Alignment explanation
Indices: 68909088--68909173 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
68909078 CCAGTGCGTT
*
68909088 GCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACATA
1 GCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCACATA
* *
68909127 GCCTGCGGACCTTAAGTCCGGGTATAATTCTAGCATATA
1 GCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCACATA
68909166 GCCTGCGG
1 GCCTGCGG
68909174 GTCTTTAAGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCACATA
Found at i:68909193 original size:40 final size:40
Alignment explanation
Indices: 68909110--68909224 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
68909100 TAAGTCCGGT
* * * * * *
68909110 TATAATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGG
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
*
68909149 TATAATTCTAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
** *
68909189 TATAATTCCATAATATAGCCTGTGGGTCTTTAAGCC
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCC
68909225 TGGATACACA
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
39 21 0.33
40 43 0.67
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (40 bp):
TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
Found at i:68912059 original size:25 final size:26
Alignment explanation
Indices: 68911986--68912079 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
68911976 ATATTCATAT
* *
68911986 TTTTACCATATAGGGGTATTACGGTCA
1 TTTTACCCTATAGGGCT-TTACGGTCA
* *
68912013 CTTTACCCTACAAGGGCTTTACGGTCA
1 TTTTACCCTA-TAGGGCTTTACGGTCA
*
68912040 TTTTACCCT-TAGGGCTTTACGGTCT
1 TTTTACCCTATAGGGCTTTACGGTCA
68912065 TTTTA-CCTAATAGGG
1 TTTTACCCT-ATAGGG
68912080 GTATTTTTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
24 3 0.05
25 19 0.33
26 5 0.09
27 25 0.44
28 5 0.09
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
TTTTACCCTATAGGGCTTTACGGTCA
Found at i:68912155 original size:27 final size:27
Alignment explanation
Indices: 68912102--68912382 Score: 158
Period size: 27 Copynumber: 10.3 Consensus size: 27
68912092 TTTCATCCTA
* * * ** *
68912102 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* *
68912129 CAAGGGTATTTCGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* *
68912156 CAATGGTATTTCT-ATAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-T
* *
68912185 CAAGGGTATTTTTGTAATTTTGTTAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* * **
68912212 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
** ***
68912239 TGAGGGTATTTTGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* **
68912265 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTGTAAAT
* * *
68912292 CTAGGGGTGTTTTGGTAATTTT-TACTGAT
1 C-AAGGGTATTTTGGTAATTTTGTA--AAT
* *
68912321 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* * *
68912348 CAATGGTATTTTAGTAATATTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
*
68912375 CGAGGGTA
1 CAAGGGTA
68912383 AAACAGTAAT
Statistics
Matches: 200, Mismatches: 42, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
26 4 0.02
27 150 0.75
28 25 0.12
29 20 0.10
30 1 0.00
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:68912305 original size:81 final size:82
Alignment explanation
Indices: 68912189--68912340 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 82
68912179 GAAAGTCAAG
* *** * *
68912189 GGTATTTTTGTAATTTTGTTAATTAGGGGTATTTTGGTAA-TTTTACAAATTGAGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTTGG
68912253 TAATTTCACAAACTAGT
66 TAATTTCACAAACTAGT
* **
68912270 GGTATTTTGGTAATTTTACAAACTAGGGGTGTTTTGGTAATTTTTACTGATCGAGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTTGG
68912335 TAATTT
66 TAATTT
68912341 TGTAAACCAA
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
81 34 0.56
82 27 0.44
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.47
Consensus pattern (82 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTTGG
TAATTTCACAAACTAGT
Found at i:68912358 original size:82 final size:81
Alignment explanation
Indices: 68912189--68912365 Score: 210
Period size: 82 Copynumber: 2.2 Consensus size: 81
68912179 GAAAGTCAAG
* *** * *
68912189 GGTATTTTTGTAATTTTGTTAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGT
* *
68912254 AATTTCACAAACTAGT
66 AATTTCACAAACCAAT
* * **
68912270 GGTATTTTGGTAATTTTACAAACTAGGGGTGTTTTGGTAATTTTTACTGATCGAGGGTATTTTGG
1 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAA-TTTTACAAATCGAGGGTATTTTGG
***
68912335 TAATTTTGTAAACCAAT
65 TAATTTCACAAACCAAT
68912352 GGTATTTTAGTAAT
1 GGTATTTTAGTAAT
68912366 ATTGTAAATC
Statistics
Matches: 80, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
81 34 0.43
82 46 0.57
ACGTcount: A:0.27, C:0.06, G:0.22, T:0.46
Consensus pattern (81 bp):
GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGT
AATTTCACAAACCAAT
Found at i:68912390 original size:27 final size:27
Alignment explanation
Indices: 68912370--68912594 Score: 317
Period size: 27 Copynumber: 8.3 Consensus size: 27
68912360 AGTAATATTG
68912370 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
68912397 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
* *
68912424 TAAATCAAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
68912451 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
* *
68912478 TAAATCGAGGGTTAAAC-GATAATTCTG
1 TAAATCGAGGGTAAAACAG-TAATTCTA
** *
68912505 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
* **
68912532 TAAGTCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
68912559 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
68912586 CAAATCGAG
1 TAAATCGAG
68912595 AGTACTTGGT
Statistics
Matches: 182, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
26 1 0.01
27 180 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACAGTAATTCTA
Found at i:68912592 original size:81 final size:81
Alignment explanation
Indices: 68912359--68912594 Score: 357
Period size: 81 Copynumber: 2.9 Consensus size: 81
68912349 AATGGTATTT
* *
68912359 TAGTAATAT-TGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCT
1 TAGTAAT-TCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT
*
68912423 ATAAATCAAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * *
68912440 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTTAAACGATAATTCTG
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
68912505 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *
68912521 TGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
*
68912586 CAAATCGAG
66 TAAATCGAG
68912595 AGTACTTGGT
Statistics
Matches: 139, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 1 0.01
81 138 0.99
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (81 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:68924616 original size:22 final size:21
Alignment explanation
Indices: 68924591--68924631 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
68924581 TTGGATTGCT
*
68924591 CACACAGGCGTGTTGCCCCTCC
1 CACACAGGAGTG-TGCCCCTCC
*
68924613 CACACGGGAGTGTGCCCCT
1 CACACAGGAGTGTGCCCCT
68924632 ATGTCGAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.15, C:0.41, G:0.27, T:0.17
Consensus pattern (21 bp):
CACACAGGAGTGTGCCCCTCC
Found at i:68933600 original size:38 final size:38
Alignment explanation
Indices: 68933556--68933628 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
68933546 ATGTTTTTCT
68933556 AGCCAAGGACGGTCCAAATGATGATTATTTTATGTTCC
1 AGCCAAGGACGGTCCAAATGATGATTATTTTATGTTCC
68933594 AGCCAAGGACGGTCCAAATGATGATTATTTTATGT
1 AGCCAAGGACGGTCCAAATGATGATTATTTTATGT
68933629 ACTTTATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (38 bp):
AGCCAAGGACGGTCCAAATGATGATTATTTTATGTTCC
Done.