Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 204 of 373
Found at i:68940763 original size:51 final size:51
Alignment explanation
Indices: 68940686--68940935 Score: 405
Period size: 51 Copynumber: 4.9 Consensus size: 51
68940676 TGGATACATG
* *
68940686 GTGGCCTTCACATAGTACCACCCTTGT-ACGCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTC-CAAAGCTATTTTATTCACAAA
* *
68940737 GTGGCATTCACCTAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
68940788 GTGGCCTTCACATAGTACTACACTTGTGTCCAAAGCTATTATT-TTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATT-TTATTCACAAA
* *
68940839 GTGGCCTTCAAATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACGAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
68940890 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
68940936 CTAATGTACC
Statistics
Matches: 185, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
50 2 0.01
51 180 0.97
52 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:68940990 original size:28 final size:24
Alignment explanation
Indices: 68940968--68941040 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
68940958 ACTTAGCACA
68940968 ATGCCATGGA-TATATTTCACTTAG
1 ATGCCATGGACT-TATTTCACTTAG
68940992 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
68941016 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
68941040 A
1 A
68941041 AAAATGTCAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 46 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:68942692 original size:66 final size:66
Alignment explanation
Indices: 68942579--68942726 Score: 242
Period size: 66 Copynumber: 2.2 Consensus size: 66
68942569 ATGAGACATG
** * * *
68942579 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTATGGGACATGTTTGACTCTATGAGTCT
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
68942644 A
66 A
68942645 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
68942710 A
66 A
*
68942711 TTTGGTGTGTTAGAGA
1 TTTGGTGTGTTGGAGA
68942727 TTCGTGTAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 76 1.00
ACGTcount: A:0.20, C:0.13, G:0.26, T:0.42
Consensus pattern (66 bp):
TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
A
Found at i:68944908 original size:45 final size:45
Alignment explanation
Indices: 68944858--68944975 Score: 182
Period size: 45 Copynumber: 2.6 Consensus size: 45
68944848 TGATCTGAAC
*
68944858 TCATTGAGTTGTGGTCTGAGTTCATGATATATGTGGCATATAAAA
1 TCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATATAAAA
* *
68944903 TCATTGAGTTGTGTTTTGAGTTCATGATATATGTGGCATATGAAA
1 TCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATATAAAA
***
68944948 TCATTGAGTTACAGTTTGAGTTCATGAT
1 TCATTGAGTTGTGGTTTGAGTTCATGAT
68944976 GTATATGGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (45 bp):
TCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATATAAAA
Found at i:68946508 original size:10 final size:10
Alignment explanation
Indices: 68946489--68946524 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
68946479 AAATTTTTCT
68946489 AAGTTATCCTA
1 AAGTT-TCCTA
68946500 AAGTTTCCTA
1 AAGTTTCCTA
*
68946510 AAGTTTTCTA
1 AAGTTTCCTA
68946520 AAGTT
1 AAGTT
68946525 CTCGATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 19 0.79
11 5 0.21
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (10 bp):
AAGTTTCCTA
Found at i:68956704 original size:20 final size:20
Alignment explanation
Indices: 68956638--68956704 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
68956628 ATTTTGATAA
*
68956638 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68956658 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68956678 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68956698 ACGTGAT
1 ACATGAT
68956705 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68956786 original size:23 final size:23
Alignment explanation
Indices: 68956756--68956827 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
68956746 GGAAGTGAAT
68956756 AAGGGCTTATGCCCCAGTTATTA
1 AAGGGCTTATGCCCCAGTTATTA
*
68956779 AAGGGCTTATGTCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATT-A
*
68956803 AAGGGCTTTTGCCCCAGTTATTA
1 AAGGGCTTATGCCCCAGTTATTA
68956826 AA
1 AA
68956828 AGAGGTTAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 24 0.53
24 21 0.47
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (23 bp):
AAGGGCTTATGCCCCAGTTATTA
Found at i:68956810 original size:24 final size:24
Alignment explanation
Indices: 68956756--68956829 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
68956746 GGAAGTGAAT
68956756 AAGGGCTTATGCCCCAGTTATT-A
1 AAGGGCTTATGCCCCAGTTATTAA
*
68956779 AAGGGCTTATGTCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
68956803 AAGGGCTTTTGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
68956827 AAG
1 AAG
68956830 AGGTTAGGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 21 0.45
24 26 0.55
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
AAGGGCTTATGCCCCAGTTATTAA
Found at i:68964694 original size:20 final size:20
Alignment explanation
Indices: 68964671--68964716 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
68964661 ATAACATGGT
68964671 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
68964691 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
68964711 ATGTAT
1 ATGTAT
68964717 ATAGCACGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:68964707 original size:15 final size:18
Alignment explanation
Indices: 68964664--68964728 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 18
68964654 GATTTTGATA
*
68964664 ACATGGTATGTATGATATGC
1 ACATGATATGTAT-ATA-GC
*
68964684 ACATGACATGTATGATATGC
1 ACATGATATGTAT-ATA-GC
68964704 ACATGATATGTATATAGC
1 ACATGATATGTATATAGC
*
68964722 ACGTGAT
1 ACATGAT
68964729 GTAATCATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.20
19 3 0.07
20 30 0.73
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (18 bp):
ACATGATATGTATATAGC
Found at i:68964810 original size:20 final size:20
Alignment explanation
Indices: 68964777--68964883 Score: 119
Period size: 20 Copynumber: 5.1 Consensus size: 20
68964767 GAGAAGTGAA
68964777 AAGGGCTTTGCCCCAGTTA-T
1 AAGGG-TTTGCCCCAGTTATT
68964797 AAGGGTTTGTCCCCAGTTATT
1 AAGGGTTTG-CCCCAGTTATT
*
68964818 AAAGGCTTATG-CCCAGTTATT
1 -AAGGGTT-TGCCCCAGTTATT
*
68964839 AAGGCTTATGCCCCAGTTATT
1 AAGGGTT-TGCCCCAGTTATT
68964860 AAAGGGCTTTGCCCCAGTTATT
1 -AAGGG-TTTGCCCCAGTTATT
68964882 AA
1 AA
68964884 AGAGGCTAGG
Statistics
Matches: 78, Mismatches: 2, Indels: 13
0.84 0.02 0.14
Matches are distributed among these distances:
19 4 0.05
20 24 0.31
21 23 0.29
22 23 0.29
23 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (20 bp):
AAGGGTTTGCCCCAGTTATT
Found at i:68964834 original size:21 final size:22
Alignment explanation
Indices: 68964780--68964885 Score: 136
Period size: 22 Copynumber: 5.0 Consensus size: 22
68964770 AAGTGAAAAG
68964780 GGCTT-TGCCCCAGTTA-T-AA
1 GGCTTATGCCCCAGTTATTAAA
*
68964799 GGGTT-TGTCCCCAGTTATTAAA
1 GGCTTATG-CCCCAGTTATTAAA
68964821 GGCTTATG-CCCAGTTATT-AA
1 GGCTTATGCCCCAGTTATTAAA
68964841 GGCTTATGCCCCAGTTATTAAA
1 GGCTTATGCCCCAGTTATTAAA
68964863 GGGCTT-TGCCCCAGTTATTAAA
1 -GGCTTATGCCCCAGTTATTAAA
68964885 G
1 G
68964886 AGGCTAGGCT
Statistics
Matches: 78, Mismatches: 2, Indels: 12
0.85 0.02 0.13
Matches are distributed among these distances:
19 6 0.08
20 19 0.24
21 22 0.28
22 24 0.31
23 7 0.09
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (22 bp):
GGCTTATGCCCCAGTTATTAAA
Found at i:68964842 original size:42 final size:43
Alignment explanation
Indices: 68964776--68964883 Score: 161
Period size: 42 Copynumber: 2.6 Consensus size: 43
68964766 GGAGAAGTGA
*
68964776 AAAGGGCTTTGCCCCAGTTA-TAAGGGTT-TGTCCCCAGTTATT
1 AAAGGGCTTTGCCCCAGTTATTAAGGCTTATG-CCCCAGTTATT
68964818 AAA-GGCTTATG-CCCAGTTATTAAGGCTTATGCCCCAGTTATT
1 AAAGGGCTT-TGCCCCAGTTATTAAGGCTTATGCCCCAGTTATT
68964860 AAAGGGCTTTGCCCCAGTTATTAA
1 AAAGGGCTTTGCCCCAGTTATTAA
68964884 AGAGGCTAGG
Statistics
Matches: 60, Mismatches: 1, Indels: 9
0.86 0.01 0.13
Matches are distributed among these distances:
41 13 0.22
42 28 0.47
43 19 0.32
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (43 bp):
AAAGGGCTTTGCCCCAGTTATTAAGGCTTATGCCCCAGTTATT
Found at i:68964899 original size:23 final size:22
Alignment explanation
Indices: 68964776--68964899 Score: 89
Period size: 20 Copynumber: 5.8 Consensus size: 22
68964766 GGAGAAGTGA
**
68964776 AAAGGGCTTTGCCCCAGTTA-T
1 AAAGGGCTAGGCCCCAGTTATT
* * *
68964797 -AAGGGTTTGTCCCCAGTTATT
1 AAAGGGCTAGGCCCCAGTTATT
*
68964818 AAA-GGCTTATG-CCCAGTTATT
1 AAAGGGC-TAGGCCCCAGTTATT
*
68964839 -AA-GGCTTATGCCCCAGTTATT
1 AAAGGGC-TAGGCCCCAGTTATT
**
68964860 AAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTAGGCCCCAGTTATT
*
68964882 AAAGAGGCTAGGCTCCAG
1 AAAG-GGCTAGGCCCCAG
68964900 ATATATGATA
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
20 26 0.31
21 23 0.27
22 23 0.27
23 13 0.15
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (22 bp):
AAAGGGCTAGGCCCCAGTTATT
Found at i:68982061 original size:27 final size:27
Alignment explanation
Indices: 68982030--68982207 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68982020 TAAATTGTAC
68982030 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68982057 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68982083 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68982111 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68982139 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68982166 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68982193 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68982208 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68982144 original size:82 final size:81
Alignment explanation
Indices: 68982031--68982186 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68982021 AAATTGTACA
* *
68982031 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68982095 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68982112 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68982177 TGCGAGTTGA
65 TGCGAATTGA
68982187 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68982198 original size:82 final size:81
Alignment explanation
Indices: 68982027--68982207 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68982017 GATTAAATTG
* *
68982027 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68982092 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68982108 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68982172 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68982190 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68982208 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68986636 original size:69 final size:70
Alignment explanation
Indices: 68986504--68986636 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
68986494 TAGTTTATTA
* * * * *
68986504 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
68986569 CTTAG
66 CTTAG
68986574 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
68986637 GTTATGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:68988078 original size:47 final size:47
Alignment explanation
Indices: 68988024--68988379 Score: 595
Period size: 47 Copynumber: 7.6 Consensus size: 47
68988014 TATTTGAATA
*
68988024 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68988071 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68988118 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68988165 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68988212 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68988259 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
68988306 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68988353 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
68988380 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 294 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:68989954 original size:21 final size:22
Alignment explanation
Indices: 68989930--68989970 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
68989920 ATGCTTTAAA
68989930 CTATCAAGTT-TTTAATTTACG
1 CTATCAAGTTCTTTAATTTACG
* *
68989951 CTATTAAGTTCTTTTATTTA
1 CTATCAAGTTCTTTAATTTA
68989971 ATCGGACACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.54
Consensus pattern (22 bp):
CTATCAAGTTCTTTAATTTACG
Found at i:68993400 original size:18 final size:18
Alignment explanation
Indices: 68993379--68993415 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
68993369 AAATAAAACA
68993379 GAAAATTTTGGAAAAATG
1 GAAAATTTTGGAAAAATG
*
68993397 GAAAATTTTGGAAATATG
1 GAAAATTTTGGAAAAATG
68993415 G
1 G
68993416 GTTACATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
GAAAATTTTGGAAAAATG
Found at i:69000106 original size:51 final size:50
Alignment explanation
Indices: 69000019--69000196 Score: 207
Period size: 52 Copynumber: 3.5 Consensus size: 50
69000009 CGGATACCTG
* * * * * *
69000019 GTGGCCTGCACATAGTACCACCCTTTTAGTCAAAGCTGCCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GGCCAAGCTACCTTCTTCACAAA
*
69000070 GTGGCCTTCACATAGTACCACACTTGTGGCCTAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGGCC-AAGCTA-CCTTCTTCACAAA
* * * *
69000122 GTGGCCTTTC-CATAGTACCACACATGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCC-TTCACATAGTACCACACTTGTGGCCAAGCTACCTTCTTCACAAA
69000171 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
69000197 AGTCACTAGT
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
48 3 0.03
49 30 0.27
50 2 0.02
51 35 0.32
52 37 0.34
53 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGGCCAAGCTACCTTCTTCACAAA
Found at i:69000128 original size:52 final size:50
Alignment explanation
Indices: 69000019--69000196 Score: 216
Period size: 51 Copynumber: 3.5 Consensus size: 50
69000009 CGGATACCTG
* * * * * **
69000019 GTGGCCTGCACATAGTACCACCCTTTTAGTCAAAGCTGCCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GGCCAAGCTATCTTCTTCACAAA
69000070 GTGGCCTTCACATAGTACCACACTTGTGGCCTAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGGCC-AAGCTATC-TTCTTCACAAA
* * *
69000122 GTGGCCTTTC-CATAGTACCACACATGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCC-TTCACATAGTACCACACTTGTGGCCAAGCTATCTTCTTCACAAA
69000171 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
69000197 AGTCACTAGT
Statistics
Matches: 112, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
48 3 0.03
49 30 0.27
50 2 0.02
51 38 0.34
52 36 0.32
53 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGGCCAAGCTATCTTCTTCACAAA
Found at i:69002106 original size:18 final size:18
Alignment explanation
Indices: 69002083--69002118 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69002073 AATAACATGA
69002083 ATTAGGTCCAACTTGAAG
1 ATTAGGTCCAACTTGAAG
69002101 ATTAGGTCCAACTTGAAG
1 ATTAGGTCCAACTTGAAG
69002119 TTCAGAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (18 bp):
ATTAGGTCCAACTTGAAG
Found at i:69002664 original size:43 final size:43
Alignment explanation
Indices: 69002617--69002700 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
69002607 CCATTCACTA
69002617 GTGCATCACTGAAAAATCATAAATTCATTACTCAATTCAAAGT
1 GTGCATCACTGAAAAATCATAAATTCATTACTCAATTCAAAGT
69002660 GTGCATCACTGAAAAATCATAAATTCATTACTCAATTCAAA
1 GTGCATCACTGAAAAATCATAAATTCATTACTCAATTCAAA
69002701 CTAAACTCAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (43 bp):
GTGCATCACTGAAAAATCATAAATTCATTACTCAATTCAAAGT
Found at i:69006536 original size:49 final size:51
Alignment explanation
Indices: 69006404--69006551 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 51
69006394 CCCTTATAGT
* * **
69006404 CAAAGCTACTTTCTTCACAAAGTGGCCTTCACATAGTACTACACTTTTGGC
1 CAAAGCTACTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTCAC
*
69006455 CAAAGCTATCTTTCTTCACAAAGTGGGCTTCACATAGTACCACACTTGTCAC
1 CAAAGCTA-CTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTCAC
* *
69006507 C-AAGCTA-TATCTTCTCAAAGTGGCCTTCACATAGTACCACACTTG
1 CAAAGCTACTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTG
69006552 AGTCACTAGT
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
49 35 0.40
51 14 0.16
52 39 0.44
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (51 bp):
CAAAGCTACTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTCAC
Found at i:69011617 original size:39 final size:40
Alignment explanation
Indices: 69011513--69011814 Score: 399
Period size: 39 Copynumber: 7.7 Consensus size: 40
69011503 TTGAATGATG
*
69011513 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
69011552 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
69011593 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGGTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
69011632 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
69011671 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
69011710 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
69011749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
69011788 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69011815 AACGAGGAGC
Statistics
Matches: 239, Mismatches: 15, Indels: 16
0.89 0.06 0.06
Matches are distributed among these distances:
39 150 0.63
40 75 0.31
41 13 0.05
42 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:69019741 original size:39 final size:40
Alignment explanation
Indices: 69019640--69019941 Score: 399
Period size: 39 Copynumber: 7.7 Consensus size: 40
69019630 TTGAATGATG
*
69019640 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
69019679 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
69019720 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGGTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
69019759 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
69019798 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
69019837 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
69019876 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
69019915 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69019942 AACGAGGAGC
Statistics
Matches: 239, Mismatches: 15, Indels: 16
0.89 0.06 0.06
Matches are distributed among these distances:
39 149 0.62
40 76 0.32
41 13 0.05
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:69019974 original size:79 final size:79
Alignment explanation
Indices: 69019693--69019974 Score: 256
Period size: 78 Copynumber: 3.6 Consensus size: 79
69019683 GGACTAAGAT
** * * * * *
69019693 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGGTACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAATCCTGAAGGCATTTGTGCGAGATACT
*
69019756 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * * *
69019771 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AAGCCTGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAATCCTGAAGGCATTTGTGCGAGATACT
*
69019834 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * * *
69019849 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCTGAAGGCATTTGTGCGAGA-TACT
*
69019913 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
69019929 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCTGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCTGAAGG
69019975 TACGTGATTT
Statistics
Matches: 182, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
77 1 0.01
78 110 0.60
79 46 0.25
80 25 0.14
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCTGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:69023141 original size:27 final size:25
Alignment explanation
Indices: 69023107--69023157 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
69023097 CAACACCTAA
*
69023107 GGGCATTTTGGTCATTTTTTCCCTTAG
1 GGGCATTTTGGT-A-TTATTCCCTTAG
69023134 GGGCATTTTGGTATTATTCCCTTA
1 GGGCATTTTGGTATTATTCCCTTA
69023158 ATTACGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.43
26 1 0.04
27 12 0.52
ACGTcount: A:0.14, C:0.18, G:0.22, T:0.47
Consensus pattern (25 bp):
GGGCATTTTGGTATTATTCCCTTAG
Found at i:69023491 original size:29 final size:29
Alignment explanation
Indices: 69023424--69023534 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
69023414 TGCACATGAT
* *
69023424 CCACTAGGCCCAA-TCTTATTCAAATGGC
1 CCACTAGGCCCAATTCATATTCATATGGC
* * * *
69023452 CTATCT-TGCCCAGTTCATATTCTTATGGC
1 CCA-CTAGGCCCAATTCATATTCATATGGC
* *
69023481 CCACTAGGCCCAATTCACATTGATATGGC
1 CCACTAGGCCCAATTCATATTCATATGGC
* *
69023510 CCATTAGGCCCAAATCATATT-ATAT
1 CCACTAGGCCCAATTCATATTCATAT
69023535 TCATGCTCAC
Statistics
Matches: 65, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
28 13 0.20
29 52 0.80
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (29 bp):
CCACTAGGCCCAATTCATATTCATATGGC
Found at i:69023771 original size:16 final size:16
Alignment explanation
Indices: 69023750--69023788 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
69023740 CCCAACTTTT
69023750 AGCTTTTCAGCATTTC
1 AGCTTTTCAGCATTTC
*
69023766 AGCTTTTTAGCATTTC
1 AGCTTTTCAGCATTTC
*
69023782 GGCTTTT
1 AGCTTTT
69023789 GACGATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.49
Consensus pattern (16 bp):
AGCTTTTCAGCATTTC
Found at i:69025034 original size:16 final size:16
Alignment explanation
Indices: 69025009--69025041 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69024999 AAAAATTTAA
*
69025009 GATTTTGGGATTTTTG
1 GATTTCGGGATTTTTG
69025025 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
69025041 G
1 G
69025042 GGCGTTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.52
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:69033228 original size:27 final size:26
Alignment explanation
Indices: 69033188--69033299 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
69033178 AGGAAGCGTC
* *
69033188 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
69033215 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
69033242 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
69033270 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
69033296 CTGG
1 CTGG
69033300 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:69033292 original size:54 final size:54
Alignment explanation
Indices: 69033188--69033299 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
69033178 AGGAAGCGTC
* *
69033188 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
69033242 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
69033296 CTGG
1 CTGG
69033300 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:69035966 original size:44 final size:42
Alignment explanation
Indices: 69035823--69035981 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 42
69035813 AAAGCTCATA
* *
69035823 CAATGGCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACATGTAAATC-AA-AT
* * * *
69035866 CGATGCC-TCTGTCCCAGACAGGGTCATACATG-AAATCAAAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACATGTAAATCAAAT
* * *
69035907 ACGATGCCAATGTCCCAGACATGGTCTTACAGGTAAATCATAAGT
1 -CAATGCCAACGTCCCAGACATGGTCTTACATGTAAATCA-AA-T
69035952 CAATGCCAACGTCCCAGACATGGTCTTACA
1 CAATGCCAACGTCCCAGACATGGTCTTACA
69035982 CGAGAACACA
Statistics
Matches: 96, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 34 0.35
44 30 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAAT
Found at i:69039488 original size:9 final size:9
Alignment explanation
Indices: 69039457--69039492 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
69039447 GACCCACAGA
69039457 ATTTTTTTT
1 ATTTTTTTT
69039466 ATTATTTATTT
1 ATT-TTT-TTT
69039477 ATTTTTTTT
1 ATTTTTTTT
69039486 ATTTTTT
1 ATTTTTT
69039493 CCATTTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 13 0.52
10 6 0.24
11 6 0.24
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:69042045 original size:27 final size:27
Alignment explanation
Indices: 69041991--69042125 Score: 121
Period size: 27 Copynumber: 5.0 Consensus size: 27
69041981 AAACATACAT
* * **
69041991 CACATAGGGGAAAAATAGTCATCCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
69042018 CACATAAGGGCAAAATAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69042045 CTCATAAGGGCAAAACT-GTCTTTTTAC
1 CACATAAGGGCAAAA-TAGTCATTTTAC
* * * *
69042072 CATATAAGGGCAAAATCGTTATTTTAA
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69042099 CACATAATGGCTAAACAGTC-TTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
69042125 C
1 C
69042126 TTACAGGGGT
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
26 7 0.08
27 78 0.91
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:69042097 original size:54 final size:54
Alignment explanation
Indices: 69042015--69042122 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
69042005 ATAGTCATCC
* * *
69042015 TACCACATAAGGGCAAAATAATCATTTTACCTCATAAGGGCAAAACTGTCTTTT
1 TACCACATAAGGGCAAAATAATCATTTTAACACATAAGGGCAAAACAGTCTTTT
* ** * * *
69042069 TACCATATAAGGGCAAAATCGTTATTTTAACACATAATGGCTAAACAGTCTTTT
1 TACCACATAAGGGCAAAATAATCATTTTAACACATAAGGGCAAAACAGTCTTTT
69042123 ACCTTACAGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (54 bp):
TACCACATAAGGGCAAAATAATCATTTTAACACATAAGGGCAAAACAGTCTTTT
Found at i:69042172 original size:27 final size:26
Alignment explanation
Indices: 69042131--69042282 Score: 160
Period size: 27 Copynumber: 5.7 Consensus size: 26
69042121 TTACCTTACA
* * *
69042131 GGGGTATTACAGTCATTTTACCGTAT
1 GGGGTATTTCGGTCATTTTACCCTAT
*
69042157 GGGGCAATTTCGGTCATTTTACCCTAT
1 GGGG-TATTTCGGTCATTTTACCCTAT
* * *
69042184 GGAGATATATCGGTCATTTTACCTTAT
1 GG-GGTATTTCGGTCATTTTACCCTAT
* * *
69042211 AGGGGTGTTTTGGTCATTTTGCCCTAT
1 -GGGGTATTTCGGTCATTTTACCCTAT
*
69042238 AAGGGTATTTCGGTCATTTTACCCTAT
1 -GGGGTATTTCGGTCATTTTACCCTAT
69042265 GGGGGTATTTCGGTCATT
1 -GGGGTATTTCGGTCATT
69042283 ATTTCACCCC
Statistics
Matches: 103, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.04
27 96 0.93
28 3 0.03
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.40
Consensus pattern (26 bp):
GGGGTATTTCGGTCATTTTACCCTAT
Found at i:69042215 original size:81 final size:81
Alignment explanation
Indices: 69042119--69042282 Score: 204
Period size: 81 Copynumber: 2.0 Consensus size: 81
69042109 CTAAACAGTC
* *
69042119 TTTTACCTTACAGGGGTATTACAGTCATTTTACCGTAT-GGGGCAATTTCGGTCATTTTACCCTA
1 TTTTACCTTACAGGGGTATTACAGTCATTTTACCCTATAAGGG-AATTTCGGTCATTTTACCCTA
69042183 TGGAGATATATCGGTCA
65 TGGAGATATATCGGTCA
* * *** * *
69042200 TTTTACCTTATAGGGGTGTTTTGGTCATTTTGCCCTATAAGGGTATTTCGGTCATTTTACCCTAT
1 TTTTACCTTACAGGGGTATTACAGTCATTTTACCCTATAAGGGAATTTCGGTCATTTTACCCTAT
* * *
69042265 GGGGGTATTTCGGTCA
66 GGAGATATATCGGTCA
69042281 TT
1 TT
69042283 ATTTCACCCC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
81 67 0.96
82 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.41
Consensus pattern (81 bp):
TTTTACCTTACAGGGGTATTACAGTCATTTTACCCTATAAGGGAATTTCGGTCATTTTACCCTAT
GGAGATATATCGGTCA
Found at i:69045033 original size:43 final size:43
Alignment explanation
Indices: 69044863--69045034 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
69044853 CATAAGATTC
* **
69044863 CGATATGTGATTTCGTGTAACTCCACGTCTAGGACATAT-GCAT
1 CGATATGTGATTTCATGTAAGACCACGTCTAGGACAT-TGGCAT
* * * * *
69044906 CGATTTGTGATTTGCGTGTAAGACCATGTCTGGGACATTAGCAT
1 CGATATGTGATTT-CATGTAAGACCACGTCTAGGACATTGGCAT
* * * ** * * *
69044950 CG-TTTATGAGTTCATGTAAGACCTTGTTTCGGACAGTGGCAT
1 CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
* *
69044992 CGATATGTGATTTCATTTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
69045035 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 26 0.25
43 51 0.50
44 26 0.25
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
CGATATGTGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
Found at i:69047036 original size:40 final size:41
Alignment explanation
Indices: 69046992--69047072 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
69046982 GCTATAAATA
69046992 GCACTAAGTGTGCGA-AATG-GAATAGCTTTGGCTATATGAG
1 GCACTAAGTGTGCGATAATGAG-ATAGCTTTGGCTATATGAG
* * *
69047032 GCACTAAGTGTGCGATACTGAGGTAGCTTTGGCTATTTGAG
1 GCACTAAGTGTGCGATAATGAGATAGCTTTGGCTATATGAG
69047073 ATGGTACTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 15 0.42
41 20 0.56
42 1 0.03
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (41 bp):
GCACTAAGTGTGCGATAATGAGATAGCTTTGGCTATATGAG
Found at i:69065109 original size:52 final size:52
Alignment explanation
Indices: 69065031--69065135 Score: 156
Period size: 52 Copynumber: 2.0 Consensus size: 52
69065021 GAGCTGCCAG
* * *
69065031 TAATAGGCTTATAGCCTTTTAGTACACTTCCTCCAATAATATATATATCCCA
1 TAATAGACTTATAGCCTTTCAGTACACCTCCTCCAATAATATATATATCCCA
* * *
69065083 TAATAGACTTATAGTCTTTCAGTACACCTCTTCTAATAATATATATATCCCA
1 TAATAGACTTATAGCCTTTCAGTACACCTCCTCCAATAATATATATATCCCA
69065135 T
1 T
69065136 CCCATGCAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (52 bp):
TAATAGACTTATAGCCTTTCAGTACACCTCCTCCAATAATATATATATCCCA
Found at i:69068185 original size:40 final size:40
Alignment explanation
Indices: 69068130--69068271 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
69068120 TATTCGAATG
69068130 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
69068170 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
69068210 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
69068250 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69068272 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.15
40 79 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:69073564 original size:37 final size:37
Alignment explanation
Indices: 69073509--69073648 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
69073499 CGAATAGTCC
* * *
69073509 CCACTCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
69073546 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
69073583 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
69073620 CCACACATAGTCATTGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69073649 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:69073903 original size:48 final size:48
Alignment explanation
Indices: 69073789--69074129 Score: 574
Period size: 48 Copynumber: 7.0 Consensus size: 48
69073779 ATATACACAC
* *
69073789 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA-C--ATATACAT
69073840 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
69073888 ATCTCATATATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
69073936 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
69073984 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
69074032 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
69074080 ATCTCATATATATTTCACACTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
69074128 AT
1 AT
69074130 TTGTCTTGTA
Statistics
Matches: 277, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
48 239 0.86
50 1 0.00
51 37 0.13
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:69079379 original size:40 final size:40
Alignment explanation
Indices: 69079324--69079465 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
69079314 TATTCGAATG
*
69079324 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
69079364 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
69079404 ATATCCGGGCTAAGACCTGAAGGCATTTGT-CTGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
*
69079444 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69079466 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
39 15 0.16
40 75 0.82
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:69103841 original size:20 final size:20
Alignment explanation
Indices: 69103810--69103847 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69103800 GTACGGTACA
69103810 TTTGGTTTTATGTGAATGCCT
1 TTTGGTTTTATGT-AATGCCT
69103831 TTTGG-TTTATGTAATGC
1 TTTGGTTTTATGTAATGC
69103848 ACCTACAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.53
Consensus pattern (20 bp):
TTTGGTTTTATGTAATGCCT
Found at i:69117864 original size:40 final size:40
Alignment explanation
Indices: 69117827--69118051 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
69117817 GCTACTCGTT
* * *
69117827 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
69117867 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
69117907 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
69117947 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
69117986 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
69118027 CAAA-ACCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
69118052 CATCATTCGA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69118036 original size:119 final size:120
Alignment explanation
Indices: 69117829--69118044 Score: 278
Period size: 119 Copynumber: 1.8 Consensus size: 120
69117819 TACTCGTTCA
* *
69117829 AATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
69117894 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATACCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
* * **
69117949 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
69118011 ATATGGTCACTTAGCACAAA-ACCTTCGGGACTTA
64 ATATAGTAAC-TAGCACAAATACCTTCGGGACTTA
69118045 GCCCGGACAT
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.72
120 19 0.23
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATACCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
Found at i:69120426 original size:40 final size:40
Alignment explanation
Indices: 69120335--69120544 Score: 269
Period size: 40 Copynumber: 5.3 Consensus size: 40
69120325 TCCTCGTTCA
* * * * *
69120335 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
69120374 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69120414 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
69120454 AATGCCCTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
69120494 AATGCCTTCGGGACTTAACCCGGCTTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69120534 AAGGCCTTCGG
1 AATGCCTTCGG
69120545 ATCTTAGTCC
Statistics
Matches: 149, Mismatches: 21, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 32 0.21
40 117 0.79
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:69120558 original size:80 final size:79
Alignment explanation
Indices: 69120335--69120544 Score: 312
Period size: 80 Copynumber: 2.6 Consensus size: 79
69120325 TCCTCGTTCA
* * * * * *
69120335 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACCATGCCTTCGGGACGTAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGCTTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
69120400 TAACAACTCGCACG
66 TAACAACTCGCACG
* *
69120414 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGCTTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
69120479 TTAACAACTCGCACG
65 TTAACAACTCGCACG
* *
69120494 AATGCCTTCGGGACTTAACCCGGCTTTAGTATCTCGCACAAAGGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGCTTTAGTAACTCGCAC-AATGCCTTCGG
69120545 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 34 0.29
80 83 0.71
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGCTTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:69126033 original size:40 final size:40
Alignment explanation
Indices: 69125950--69126290 Score: 449
Period size: 40 Copynumber: 8.6 Consensus size: 40
69125940 TTGAATGCTG
* * * * * *
69125950 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
69125990 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
69126030 TCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
69126070 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
69126110 TCCGGGTTAAGT-CCGAAGGCA-TCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
69126148 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
69126188 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
69126228 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
69126267 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69126291 TGAACGAGGA
Statistics
Matches: 273, Mismatches: 23, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
38 28 0.10
39 53 0.19
40 184 0.67
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:69126168 original size:118 final size:118
Alignment explanation
Indices: 69125950--69126290 Score: 468
Period size: 118 Copynumber: 2.9 Consensus size: 118
69125940 TTGAATGCTG
* * * * * * * *
69125950 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCGAAGG-CAT
* *
69126014 TGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
63 TGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
69126070 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATCGT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTGT
**
69126135 GCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
69126188 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGT-CCGAAGGCATTG
* * * *
69126253 TGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
65 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
69126291 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
118 103 0.52
119 51 0.26
120 37 0.19
121 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTGT
GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:69126284 original size:158 final size:158
Alignment explanation
Indices: 69125989--69126289 Score: 453
Period size: 158 Copynumber: 1.9 Consensus size: 158
69125979 AAGTGAATAT
* *
69125989 ATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATT
1 ATCCGGATTAAGATCCGAAGGCATTCGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATT
* * *
69126054 CGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTA
66 CGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTA
69126119 AGTCCGAAGGCATCGTGCGAGTTGTTAA
131 AGTCCGAAGGCATCGTGCGAGTTGTTAA
* * * *
69126147 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGATTAAGAT-CCGAAGGCATTCGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCAT
* * *
69126211 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCT
65 TCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCT
*
69126275 ATGTCCCGAAGGCAT
130 AAGT-CCGAAGGCAT
69126290 TTGAACGAGG
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
157 23 0.18
158 105 0.82
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (158 bp):
ATCCGGATTAAGATCCGAAGGCATTCGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATT
CGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTA
AGTCCGAAGGCATCGTGCGAGTTGTTAA
Found at i:69126314 original size:158 final size:157
Alignment explanation
Indices: 69125951--69126325 Score: 443
Period size: 158 Copynumber: 2.4 Consensus size: 157
69125941 TGAATGCTGT
* * * * *
69125951 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGA-ATATATCCGGATTAAGAT-CCGAAGGCCTT
1 CCGGGCTAAGT-CCGAAGGCATCGTGC-GAG-GAGCTATATCCGG-TTAAG-TCCCGAAGGCATT
*
69126014 TGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTA
61 CGTGCGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTA
* *
69126079 AGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
126 AGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* ** * *
69126111 CCGGGTTAAGTCCGAAGGCATCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CCGGGCTAAGTCCGAAGGCATCGTGCGAGGAGCTATATCC-GGTTAAGTCCCGAAGGCATTCGTG
* * * * *
69126176 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
65 CGAGATACTAAATCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
69126241 CCGAAGGCATT-GTGTGAGTTACTAAAA
130 CCGAAGGCATTCGTGCGAGTTACTAAAA
* * *
69126268 CCGGGCTATGTCCCGAAGGCAT-TTGAACGAGGAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGT-CCGAAGGCATCGTG--CGAGGAGCTATATCCGGTTAAGTCCCGAAGG
69126326 TACGTGATTT
Statistics
Matches: 183, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
157 25 0.14
158 122 0.67
159 26 0.14
160 10 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (157 bp):
CCGGGCTAAGTCCGAAGGCATCGTGCGAGGAGCTATATCCGGTTAAGTCCCGAAGGCATTCGTGC
GAGATACTAAATCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
CGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:69134099 original size:45 final size:40
Alignment explanation
Indices: 69133958--69134225 Score: 290
Period size: 40 Copynumber: 6.6 Consensus size: 40
69133948 TTGAATGCTG
* * * * * *
69133958 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
69133998 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
69134038 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-T---T-AAA
69134083 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
69134123 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
69134163 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
69134202 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69134226 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
39 35 0.17
40 117 0.58
41 9 0.04
44 2 0.01
45 38 0.19
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:69134112 original size:85 final size:79
Alignment explanation
Indices: 69133958--69134225 Score: 290
Period size: 85 Copynumber: 3.3 Consensus size: 79
69133948 TTGAATGCTG
* * * * * *
69133958 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGG-C
* *
69134020 TTTGTGCGAGATACTAAA
62 ATTGTGCGAGTTACTAAA
*
69134038 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCAAATCCGGGTTAAGTCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-GT---T-AAATCCGGGTTAAGTCCCGAAGG
*
69134103 CATTCGTGCGAGTTATTAAA
61 CATT-GTGCGAGTTACTAAA
*
69134123 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTG
*
69134188 TGTGAGTTACTAAA
66 TGCGAGTTACTAAA
* * *
69134202 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69134226 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 17, Indels: 19
0.82 0.09 0.10
Matches are distributed among these distances:
79 34 0.21
80 48 0.30
81 8 0.05
84 6 0.04
85 66 0.41
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGTTACTAAA
Found at i:69134180 original size:125 final size:124
Alignment explanation
Indices: 69133958--69134201 Score: 312
Period size: 125 Copynumber: 2.0 Consensus size: 124
69133948 TTGAATGCTG
* * * *
69133958 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
*
69134023 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCAAA
* * * * *
69134083 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCAT
* ** * *
69134146 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
69134202 ACCGGGCTAT
Statistics
Matches: 102, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
124 14 0.14
125 82 0.80
126 6 0.06
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (124 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCAAA
Found at i:69134245 original size:79 final size:80
Alignment explanation
Indices: 69133997--69134260 Score: 228
Period size: 85 Copynumber: 3.3 Consensus size: 80
69133987 AAGTGAATAT
* * * * * *
69133997 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * **
69134061 TCGTGCGAGTTATTAAATCAA
65 TCGAACGAG----GAGCT-AA
* * *
69134082 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
69134147 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
69134162 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
69134226 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
69134241 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
69134261 TACGTGATTT
Statistics
Matches: 155, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
78 14 0.09
79 46 0.30
80 26 0.17
81 2 0.01
84 1 0.01
85 66 0.43
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:69149692 original size:34 final size:34
Alignment explanation
Indices: 69149608--69149684 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
69149598 TTTATTTGTT
69149608 TGCATACTGTACTGAAATGGGCTAAGGCCCAGAC
1 TGCATACTGTACTGAAATGGGCTAAGGCCCAGAC
* *
69149642 TGCCT-CTGGTACTGAAATGGGCTCAGGCCCAGAC
1 TGCATACT-GTACTGAAATGGGCTAAGGCCCAGAC
69149676 TG-ATACTGT
1 TGCATACTGT
69149685 TTCTGAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
33 5 0.13
34 33 0.87
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (34 bp):
TGCATACTGTACTGAAATGGGCTAAGGCCCAGAC
Found at i:69152184 original size:23 final size:24
Alignment explanation
Indices: 69152151--69152196 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
69152141 GCATCACATT
*
69152151 TCATATACCAAAATCAAACCATAA
1 TCATATACCAAAACCAAACCATAA
*
69152175 TCATA-ACCAAAACCAAGCCATA
1 TCATATACCAAAACCAAACCATA
69152197 TCACATGGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.17
Consensus pattern (24 bp):
TCATATACCAAAACCAAACCATAA
Found at i:69152812 original size:42 final size:43
Alignment explanation
Indices: 69152721--69152826 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 43
69152711 AATGCTAACT
***
69152721 TCCCAGACATGGTCTTACATGTAACCAAATATCGATGCCATTG
1 TCCCAGACATGGTCTTACACAAAACCAAATATCGATGCCATTG
* * * *
69152764 TACCAGACAGGGTCTTACACAAAATCAAATA-CGATGCTGA-TG
1 TCCCAGACATGGTCTTACACAAAACCAAATATCGATGC-CATTG
69152806 TCCCAGACATGGTCTTACACA
1 TCCCAGACATGGTCTTACACA
69152827 TAATTCATAA
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACAAAACCAAATATCGATGCCATTG
Found at i:69154644 original size:39 final size:39
Alignment explanation
Indices: 69154601--69154693 Score: 132
Period size: 39 Copynumber: 2.4 Consensus size: 39
69154591 GGTCTTTAAC
* **
69154601 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCACAAAGCCTGCGGACCTCAAGT
* *
69154640 CCGGATATATTTCCAGCATAAAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCACAAAGCCTGCGGACCTCAAGT
*
69154679 ACGGATATATTTCCA
1 CCGGATATATTTCCA
69154694 ATCTCATATA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (39 bp):
CCGGATATATTTCCAGCACAAAGCCTGCGGACCTCAAGT
Found at i:69162636 original size:39 final size:39
Alignment explanation
Indices: 69162590--69162721 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 39
69162580 GGACTTTAAC
* ** *
69162590 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
69162629 CCAGATATATTTCCAGCATATAGCCTACGGACCTCATGC
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
69162668 CCGGATATATTTCCAGCATATAGCCTGCTGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
69162707 CTGGATATATTTCCA
1 CCGGATATATTTCCA
69162722 ATCTCATAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:69170282 original size:79 final size:79
Alignment explanation
Indices: 69170144--69170367 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 79
69170134 TTGAATGCTG
* * * * *
69170144 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCTGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCGAAGGCAT
69170206 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* *
69170223 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
69170288 TGCGAGTTACTAAA
66 TGCGAGTTACTAAA
* *
69170302 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATT
69170366 TG
64 TG
69170368 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 91 0.71
80 30 0.23
81 8 0.06
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:69170290 original size:39 final size:40
Alignment explanation
Indices: 69170198--69170367 Score: 281
Period size: 40 Copynumber: 4.3 Consensus size: 40
69170188 ACTAAGATCT
*
69170198 GAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
69170238 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT-CC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
69170277 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
* * *
69170317 GAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCC
69170357 GAAGGCATTTG
1 GAAGGCATTTG
69170368 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 39 0.31
40 83 0.67
41 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
Found at i:69170389 original size:79 final size:79
Alignment explanation
Indices: 69170144--69170400 Score: 256
Period size: 79 Copynumber: 3.3 Consensus size: 79
69170134 TTGAATGCTG
* * * * *
69170144 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCTGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCGAAGGCAT
** *
69170206 TTGTGCGAGTTACTAAA
63 TTGAACGAGTGACTAAA
* * *
69170223 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
** *
69170288 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
69170302 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGT-CCGAAGGCATT
*
69170366 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
69170382 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69170401 TACGTGATTT
Statistics
Matches: 154, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
79 106 0.69
80 39 0.25
81 9 0.06
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:69178088 original size:40 final size:40
Alignment explanation
Indices: 69177850--69178074 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
69177840 TTGAATGCTG
* * *
69177850 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
**
69177889 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
69177929 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
69177969 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69178009 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69178050 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
69178075 AACGAGGAGC
Statistics
Matches: 172, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
39 19 0.11
40 143 0.83
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69178092 original size:120 final size:119
Alignment explanation
Indices: 69177850--69178107 Score: 294
Period size: 120 Copynumber: 2.2 Consensus size: 119
69177840 TTGAATGCTG
*
69177850 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
* * ** *
69177915 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 TGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAA
* * **
69177969 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
* *
69178031 TTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
62 TTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
69178089 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69178108 TACGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
119 36 0.30
120 73 0.61
121 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
TGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:69187100 original size:7 final size:7
Alignment explanation
Indices: 69187088--69187118 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
69187078 AGTCCATAAA
69187088 TTTTATT
1 TTTTATT
69187095 TTTTATT
1 TTTTATT
69187102 TTTTATT
1 TTTTATT
69187109 TTTTATT
1 TTTTATT
69187116 TTT
1 TTT
69187119 GAAAAGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTATT
Found at i:69192056 original size:39 final size:39
Alignment explanation
Indices: 69192008--69192135 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
69191998 TTTAACCCGA
* ** *
69192008 ATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
69192047 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
* *
69192086 ATATATTTCCAGCATATAGCCTGCGGACTTCATGTCAGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
69192125 ATATATTTCCA
1 ATATATTTCCA
69192136 ATCTCATATA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (39 bp):
ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
Found at i:69195253 original size:22 final size:22
Alignment explanation
Indices: 69195207--69195253 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
69195197 CTGGGCCTAA
*
69195207 GCCCAGATCAGTAACAGTTTAG
1 GCCCAGATCAGTAACAGTCTAG
*
69195229 GCCCAGATCAGTAACAGTCTGG
1 GCCCAGATCAGTAACAGTCTAG
69195251 GCC
1 GCC
69195254 TAAGCCCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (22 bp):
GCCCAGATCAGTAACAGTCTAG
Found at i:69195541 original size:27 final size:27
Alignment explanation
Indices: 69195483--69195547 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
69195473 AGCATAGCTG
* *
69195483 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
* *
69195510 CCAGTAACAGTGAATGTGACATAGCCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
69195537 CCAGT-ACAGTA
1 CCAGTAACAGTA
69195548 CTTCCACCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
26 5 0.15
27 28 0.85
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGACAAAGCCA
Found at i:69195741 original size:27 final size:27
Alignment explanation
Indices: 69195703--69195983 Score: 324
Period size: 27 Copynumber: 10.6 Consensus size: 27
69195693 CATACAAAAT
*
69195703 ATTACGGTCATTTTATCCTACAAGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* *
69195730 ATTACGGTCATTTTACCCTACACGGGT
1 ATTACGGTCATTTTACCCTACAAGGGC
69195757 ATTACGGTCATTTTACCCTACAAGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* * *
69195784 ATTACGGTTATTTTACCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
**
69195811 ATTACGGTCATTTT-CCCTACAAGGAT
1 ATTACGGTCATTTTACCCTACAAGGGC
** * *
69195837 ATTATAGTCGTTTTACCCTACAACGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* * *
69195864 ATTACGGT-ATTTTTACCCTATAGGGGT
1 ATTACGGTCA-TTTTACCCTACAAGGGC
*
69195891 ATTACGGTCATTTTACCCTACAATGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
*
69195918 ATTACGGTCATTTTACCCTACAA-GGT
1 ATTACGGTCATTTTACCCTACAAGGGC
* *
69195944 ATTAC-GTCA-TTTACCTTAC-AGGGT
1 ATTACGGTCATTTTACCCTACAAGGGC
*
69195968 A-TACGATCATTTTACC
1 ATTACGGTCATTTTACC
69195984 TATTGGGTTT
Statistics
Matches: 215, Mismatches: 33, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
23 4 0.02
24 16 0.07
25 10 0.05
26 26 0.12
27 158 0.73
28 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAAGGGC
Found at i:69195857 original size:107 final size:105
Alignment explanation
Indices: 69195703--69195983 Score: 320
Period size: 107 Copynumber: 2.6 Consensus size: 105
69195693 CATACAAAAT
* * *
69195703 ATTACGGTCATTTTATCCTACAAGGGCATTACGGTCATTTTACCCTACACGGGTATTACGGTCAT
1 ATTACGGTCATTTTACCCTACAA-GGTATTA-AGTC-TTTTACCCTACACGGGTATTACGGTCAT
* * *
69195768 TTTACCCTACAAGGGCATTACGGTTATTTTACCCTATAGGGGC
63 TTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAAGGGC
*
69195811 ATTACGGTCATTTT-CCCTACAAGGATATTATAGTCGTTTTACCCTACAAC-GGCATTACGGT-A
1 ATTACGGTCATTTTACCCTACAAGG-TATTA-AGTC-TTTTACCCTAC-ACGGGTATTACGGTCA
* * * *
69195873 TTTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAATGGC
62 -TTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAAGGGC
* * * *
69195918 ATTACGGTCATTTTACCCTACAAGGTATTACGTCATTTACCTTACA-GGGTA-TACGATCATTTT
1 ATTACGGTCATTTTACCCTACAAGGTATTAAGTCTTTTACCCTACACGGGTATTACGGTCATTTT
69195981 ACC
66 ACC
69195984 TATTGGGTTT
Statistics
Matches: 149, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
103 12 0.08
104 5 0.03
105 9 0.06
106 6 0.04
107 91 0.61
108 26 0.17
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (105 bp):
ATTACGGTCATTTTACCCTACAAGGTATTAAGTCTTTTACCCTACACGGGTATTACGGTCATTTT
ACCCTACAAGGGCATTACGGTCATTTTACCCTACAAGGGC
Found at i:69197620 original size:92 final size:93
Alignment explanation
Indices: 69197514--69197683 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
69197504 GCCCCTAAGT
* * *
69197514 GAACTCGGACTCAACTCAACTAGCTCGGGCGTTCGCATCCATAAGTGAACT-GGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69197578 TGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
69197606 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69197671 CGAGTTCGGATGC
66 CGAGCTCGGATGC
69197684 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 47 0.66
93 24 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:69197669 original size:46 final size:46
Alignment explanation
Indices: 69197509--69197680 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
69197499 AACCCGCCCC
* * *
69197509 TAAGTGAACTCGGACTCAACTCAACTAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
* *
69197555 TAAGTGAACT-GGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCA
* * *
69197602 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
*
69197647 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
69197681 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 22 0.21
46 44 0.42
47 23 0.22
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
Found at i:69209988 original size:34 final size:33
Alignment explanation
Indices: 69209960--69210022 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
69209950 TACTGAATTG
69209960 GGCTAAGGCCCACACTGATACTGGTACTGTAATA
1 GGCTAAGGCCCA-ACTGATACTGGTACTGTAATA
*
69209994 GGCTAAGGCCCAACTAATACTGG-ACTGTA
1 GGCTAAGGCCCAACTGATACTGGTACTGTA
69210023 CTGAAACAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 6 0.21
33 10 0.36
34 12 0.43
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (33 bp):
GGCTAAGGCCCAACTGATACTGGTACTGTAATA
Found at i:69210034 original size:37 final size:34
Alignment explanation
Indices: 69209960--69210042 Score: 87
Period size: 37 Copynumber: 2.4 Consensus size: 34
69209950 TACTGAATTG
* * *
69209960 GGCTAAGGCCCACACTGATACTGGTACTGTAATA
1 GGCTAAGGCCCACACTAATACTGGTACTGAAACA
69209994 GGCTAAGGCCCA-ACTAATACTGGACTGTACTGAAACA
1 GGCTAAGGCCCACACTAATACT-G---GTACTGAAACA
*
69210031 GGCTCAGGCCCA
1 GGCTAAGGCCCA
69210043 GACTGTAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 8 0.20
34 13 0.32
37 20 0.49
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (34 bp):
GGCTAAGGCCCACACTAATACTGGTACTGAAACA
Found at i:69220090 original size:140 final size:138
Alignment explanation
Indices: 69219841--69220161 Score: 366
Period size: 140 Copynumber: 2.3 Consensus size: 138
69219831 ATTGGGTGAT
*
69219841 ATGTGTGCTAGTGTAAGACATGTCTGGACAT-GCATCAGCATTGAGACGAGAGCTAGTGTAAGAC
1 ATGTGTGC-AGTGTAAGACATGTCTGGACATGGCATCAGCATTGAGACGAGAGCCAGTGTAAGAC
* * *
69219905 ATGTCTGGGACATGCATTGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCT-GGACATGGCG
65 ATGTCTGGGACAGGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGGGACATGGCA
69219969 TCAAC-TTG
130 TCAACTTTG
* * *
69219977 TTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATC-GACATTGATAGATGAGAGCCAGTGTA
1 ATGTGTG-CAGTGTAAGACATGTCT-GGACATGGCATCAG-CATTG--AGACGAGAGCCAGTGTA
* * * *
69220041 AGACCTGTTTGGGACACGGCATCGGCCTTGA-ATATGA-AAGTTAGTGTAAGACCTATCTGGGAC
61 AGACATGTCTGGGACA-GGCATCGGCCTCGAGATAT-ACAAGCTAGTGTAAGACCTATCTGGGAC
*
69220104 ATGGCATCGACTTTG
124 ATGGCATCAACTTTG
*
69220119 ATGTGCTAGCCAGTGTAAGATCATGTCTAGGACATGGCGTCAG
1 ATGTG-T-G-CAGTGTAAGA-CATGTCT-GGACATGGCATCAG
69220162 TATCTTATTC
Statistics
Matches: 154, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
136 21 0.14
137 8 0.05
138 10 0.06
140 53 0.34
141 25 0.16
142 7 0.05
143 1 0.01
144 11 0.07
145 17 0.11
146 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (138 bp):
ATGTGTGCAGTGTAAGACATGTCTGGACATGGCATCAGCATTGAGACGAGAGCCAGTGTAAGACA
TGTCTGGGACAGGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGGGACATGGCAT
CAACTTTG
Found at i:69220102 original size:48 final size:49
Alignment explanation
Indices: 69219985--69220156 Score: 188
Period size: 48 Copynumber: 3.6 Consensus size: 49
69219975 TGTTGTGTGT
*
69219985 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
* * * * * *
69220034 CAGTGTAAGACCTGTTTGGGACACGGCATCGGCCTTGA-ATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
* * * **
69220082 TAGTGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
* *
69220129 CAGTGTAAGATCATGTCTAGGACATGGC
1 CAGTGTAAGA-CCTGTCTGGGACATGGC
69220157 GTCAGTATCT
Statistics
Matches: 100, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
47 13 0.13
48 53 0.53
49 34 0.34
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
Found at i:69232505 original size:29 final size:29
Alignment explanation
Indices: 69232442--69232509 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
69232432 TAATCAACCG
*
69232442 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
69232471 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
69232500 CGCACACTTA
1 CGCACACTTA
69232510 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:69232621 original size:174 final size:174
Alignment explanation
Indices: 69232331--69232658 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
69232321 AACTCAAGGT
* *
69232331 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
69232396 GAAAATATATATTGAGTTCGCACACATAGTGCGTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCGTAATAATCAACCGCGCACACTTAGTGCCATGT
69232461 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
69232505 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
69232570 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCGTAATAATCAACCGCGCACACTTAGTGCCATGT
*
69232635 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
69232659 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCGTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:69232650 original size:29 final size:30
Alignment explanation
Indices: 69232611--69232689 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
69232601 CTTAATAATC
69232611 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
69232641 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
69232670 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69232690 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:69235192 original size:40 final size:40
Alignment explanation
Indices: 69235094--69235476 Score: 565
Period size: 40 Copynumber: 9.6 Consensus size: 40
69235084 TCCTCGTTCA
* * * * *
69235094 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
69235133 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69235173 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69235213 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69235253 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69235293 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69235333 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
69235373 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
69235413 AAGGCCTTC-GGATCTTAATCCGGATGTATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
69235453 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
69235477 CAGCATTCAA
Statistics
Matches: 320, Mismatches: 20, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.12
40 275 0.86
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:69243240 original size:40 final size:40
Alignment explanation
Indices: 69243142--69243524 Score: 538
Period size: 40 Copynumber: 9.6 Consensus size: 40
69243132 TCCTCGTTCA
* * * * *
69243142 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
69243181 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69243221 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69243261 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69243301 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69243341 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
69243381 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
69243421 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
69243461 AAGGCCTTC-GGATCTTAATCTGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
69243501 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
69243525 CAGCATTCAA
Statistics
Matches: 316, Mismatches: 24, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.12
40 271 0.86
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:69246883 original size:14 final size:16
Alignment explanation
Indices: 69246859--69246891 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
69246849 ATTTTCAATG
69246859 TTTATTATGTGTGA-A
1 TTTATTATGTGTGACA
69246874 TTTA-TATGTGTGACA
1 TTTATTATGTGTGACA
69246889 TTT
1 TTT
69246892 TCGTGCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGACA
Found at i:69248109 original size:43 final size:42
Alignment explanation
Indices: 69248014--69248109 Score: 97
Period size: 43 Copynumber: 2.2 Consensus size: 42
69248004 TTTGTGTTCT
* * * *
69248014 CATGTAAGAACATGTCTGGGAGGTTGGCATCGATATGTGATTT
1 CATGTAAG-ACATGTCTGGGAAGTTGGCACCGACATGTGATTA
*
69248057 CGA-GGAAGACGATGTCTGGGACAG-TGGCACCGACATGTGATTA
1 C-ATGTAAGAC-ATGTCTGGGA-AGTTGGCACCGACATGTGATTA
69248100 CATGTAAGAC
1 CATGTAAGAC
69248110 CACGTCGGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.07
43 38 0.88
44 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (42 bp):
CATGTAAGACATGTCTGGGAAGTTGGCACCGACATGTGATTA
Found at i:69252496 original size:44 final size:42
Alignment explanation
Indices: 69252448--69252569 Score: 104
Period size: 42 Copynumber: 2.8 Consensus size: 42
69252438 CCACGCTTGG
*
69252448 GACATTGGCAATG-ACTTATGAATTACATGTAAGACCATGTCTGA
1 GACATTGGCAATGTA-TT-TG-ATTACATGTAAGACCATATCTGA
* * * * *
69252492 GACATCGGCATTGTATTTGATTTCATGTAAGACCCTATCTGG
1 GACATTGGCAATGTATTTGATTACATGTAAGACCATATCTGA
* * *
69252534 GACAGTGGC-ATCAATATTTGGTTACATGTAAGACCA
1 GACATTGGCAAT--GTATTTGATTACATGTAAGACCA
69252570 CGTACGGGAC
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
41 1 0.02
42 26 0.42
43 21 0.34
44 13 0.21
45 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (42 bp):
GACATTGGCAATGTATTTGATTACATGTAAGACCATATCTGA
Found at i:69252524 original size:42 final size:43
Alignment explanation
Indices: 69252469--69252569 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
69252459 TGACTTATGA
* **
69252469 ATTACATGTAAGACCATGTCTGAGACA-TCGGCAT-TGTATTTG
1 ATTACATGTAAGACCATATCTGAGACAGT-GGCATCAATATTTG
* * *
69252511 ATTTCATGTAAGACCCTATCTGGGACAGTGGCATCAATATTTG
1 ATTACATGTAAGACCATATCTGAGACAGTGGCATCAATATTTG
*
69252554 GTTACATGTAAGACCA
1 ATTACATGTAAGACCA
69252570 CGTACGGGAC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 28 0.58
43 20 0.42
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (43 bp):
ATTACATGTAAGACCATATCTGAGACAGTGGCATCAATATTTG
Found at i:69252579 original size:43 final size:43
Alignment explanation
Indices: 69252469--69252587 Score: 102
Period size: 43 Copynumber: 2.8 Consensus size: 43
69252459 TGACTTATGA
* * * * * **
69252469 ATTACATGTAAGACCATGTCTGAGACATCGGCAT-TGTATTTG
1 ATTACATGTAAGACCCTATCTGGGACGTTGGCATCAATATTTG
*
69252511 ATTTCATGTAAGACCCTATCTGGGACAG-TGGCATCAATATTTG
1 ATTACATGTAAGACCCTATCTGGGAC-GTTGGCATCAATATTTG
*
69252554 GTTACATGTAAGACCACGTA-C-GGGACGTTGGCAT
1 ATTACATGTAAGACC-C-TATCTGGGACGTTGGCAT
69252588 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.45
43 30 0.48
44 2 0.03
45 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
ATTACATGTAAGACCCTATCTGGGACGTTGGCATCAATATTTG
Found at i:69253141 original size:23 final size:24
Alignment explanation
Indices: 69253115--69253160 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
69253105 TGCCATGTGA
*
69253115 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
69253138 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
69253161 AATGTGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:69253647 original size:12 final size:12
Alignment explanation
Indices: 69253590--69253648 Score: 64
Period size: 12 Copynumber: 4.9 Consensus size: 12
69253580 CAGAACCACA
69253590 CGGTCGCACACG
1 CGGTCGCACACG
* **
69253602 CGGTCACACGTG
1 CGGTCGCACACG
*
69253614 CGGTCGCACGCG
1 CGGTCGCACACG
*
69253626 CTGTCGCACACG
1 CGGTCGCACACG
*
69253638 CGATCGCACAC
1 CGGTCGCACAC
69253649 ACGGGTGTGT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.17, C:0.41, G:0.31, T:0.12
Consensus pattern (12 bp):
CGGTCGCACACG
Found at i:69259216 original size:15 final size:15
Alignment explanation
Indices: 69259196--69259225 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69259186 GAACCCGAAT
69259196 GCTCAACCCCCTCCA
1 GCTCAACCCCCTCCA
69259211 GCTCAACCCCCTCCA
1 GCTCAACCCCCTCCA
69259226 TGTAAGAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.60, G:0.07, T:0.13
Consensus pattern (15 bp):
GCTCAACCCCCTCCA
Found at i:69263923 original size:45 final size:46
Alignment explanation
Indices: 69263839--69264057 Score: 210
Period size: 46 Copynumber: 4.8 Consensus size: 46
69263829 TTTGGGCATT
* * *
69263839 CGAGCTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTC
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
*
69263885 TGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGTC
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * * * * * * *
69263930 CGAACTTGTTGAGTTGAGTCCGAGTTC-GTGATATGTA-ACTAGGCATC
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACGTC
* * * *
69263977 CAAGCTCGTTGAGTTGACTCCAAGTTCACTTATGGATGCGAACGCC
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * **
69264023 CGACCTCATTGAGTTGAGTCCGAGTTTGCTTATGG
1 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69264058 GCTTACGAAG
Statistics
Matches: 135, Mismatches: 32, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
45 41 0.30
46 61 0.45
47 32 0.24
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
Found at i:69268748 original size:22 final size:22
Alignment explanation
Indices: 69268720--69268773 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
69268710 ACTAAGTCAC
69268720 TTGGTATTAGATACATGACTGA
1 TTGGTATTAGATACATGACTGA
**
69268742 TTGGTATTAGATATGTGACTGA
1 TTGGTATTAGATACATGACTGA
*
69268764 TTGGTCTTAG
1 TTGGTATTAG
69268774 TGCTAGTGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (22 bp):
TTGGTATTAGATACATGACTGA
Found at i:69285101 original size:46 final size:46
Alignment explanation
Indices: 69285051--69285223 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
69285041 TGGTTGAGCA
69285051 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
69285097 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69285142 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69285190 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69285224 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69285207 original size:93 final size:93
Alignment explanation
Indices: 69285048--69285218 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
69285038 GGATGGTTGA
* *
69285048 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69285113 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
69285141 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
69285206 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
69285219 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:69288203 original size:22 final size:23
Alignment explanation
Indices: 69288156--69288259 Score: 86
Period size: 24 Copynumber: 4.4 Consensus size: 23
69288146 TAGCTCGTAT
* *
69288156 GAGCTTACTGATTCAGCTTGAA-A
1 GAGCTTACTGTTTCAGC-TCAATA
69288179 GAGCTTACTGTTT-AGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
* * *
69288201 GAGCTTCCCGTTTCCAGCTCAATC
1 GAGCTTACTGTTT-CAGCTCAATA
* * *
69288225 GAGCTTAGTGTTATCAGTTCATTA
1 GAGCTTACTGTT-TCAGCTCAATA
69288249 TGAGCTTACTG
1 -GAGCTTACTG
69288260 GCCATGTCTC
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
21 3 0.05
22 15 0.23
23 12 0.19
24 24 0.38
25 10 0.16
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:69289375 original size:20 final size:20
Alignment explanation
Indices: 69289350--69289390 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
69289340 AGGCACACGG
*
69289350 GCGTGTCTAAGGCTGTGTGA
1 GCGTGTCTAAGGCCGTGTGA
69289370 GCGTGTCTAAGGCCGTGTGA
1 GCGTGTCTAAGGCCGTGTGA
69289390 G
1 G
69289391 GCACACGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.41, T:0.27
Consensus pattern (20 bp):
GCGTGTCTAAGGCCGTGTGA
Found at i:69291751 original size:86 final size:86
Alignment explanation
Indices: 69291605--69291771 Score: 289
Period size: 86 Copynumber: 1.9 Consensus size: 86
69291595 CGAGTGAAAC
* *
69291605 ACTCGAATGTACCGAAAATAGCCTTCAGAACCAGGAATGGGCATTATGAATTCCTCGTGATATCG
1 ACTCGAATGTACCGAAAATAGCCTTCAGAACCAAGAACGGGCATTATGAATTCCTCGTGATATCG
69291670 TTTGGCTTGACTAATGTACAA
66 TTTGGCTTGACTAATGTACAA
* * *
69291691 ACTCGGATGTACCGAAAATAGCCTTCAGAACCAAGTACGGGCATTATGAATTCCTTGTGATATCG
1 ACTCGAATGTACCGAAAATAGCCTTCAGAACCAAGAACGGGCATTATGAATTCCTCGTGATATCG
69291756 TTTGGCTTGACTAATG
66 TTTGGCTTGACTAATG
69291772 CACCTGCAGT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 76 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (86 bp):
ACTCGAATGTACCGAAAATAGCCTTCAGAACCAAGAACGGGCATTATGAATTCCTCGTGATATCG
TTTGGCTTGACTAATGTACAA
Found at i:69295858 original size:28 final size:28
Alignment explanation
Indices: 69295826--69295890 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
69295816 TATAGTAAGT
69295826 ACTTAGTGCT-TA-ATAGTCAAACTCGCAC
1 ACTTAGTGCTATACA-A-TCAAACTCGCAC
*
69295854 ACTTAGTGCTATACAATTAAACTCGCAC
1 ACTTAGTGCTATACAATCAAACTCGCAC
69295882 ACTTAGTGC
1 ACTTAGTGC
69295891 CAATCTCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
28 30 0.88
29 3 0.09
30 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (28 bp):
ACTTAGTGCTATACAATCAAACTCGCAC
Found at i:69301123 original size:20 final size:19
Alignment explanation
Indices: 69301083--69301136 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
69301073 AACTAATATT
69301083 AAACATAATAAAAATAGTAA
1 AAACATAATAAAAATA-TAA
69301103 AAACATAATAATAGAAT-TAA
1 AAACATAATAA-A-AATATAA
*
69301123 ATAC-TAATAAAAAT
1 AAACATAATAAAAAT
69301137 CAACATAGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.10
18 1 0.03
19 6 0.19
20 17 0.55
21 1 0.03
22 3 0.10
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (19 bp):
AAACATAATAAAAATATAA
Found at i:69307249 original size:24 final size:24
Alignment explanation
Indices: 69307220--69307280 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
69307210 AAAGTCTTTT
* *
69307220 AAGAAAATG-ATAAATAAAGATAA
1 AAGAAAATGAAAAAATAAAAATAA
69307243 AA-AGAAATGAAAAAATAAAAATAA
1 AAGA-AAATGAAAAAATAAAAATAA
*
69307267 AAGAAAAAGAAAAA
1 AAGAAAATGAAAAA
69307281 CAAATTGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 1 0.03
23 7 0.22
24 23 0.72
25 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (24 bp):
AAGAAAATGAAAAAATAAAAATAA
Found at i:69307280 original size:18 final size:19
Alignment explanation
Indices: 69307235--69307280 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
69307225 AATGATAAAT
*
69307235 AAAGATAAAAAGAAATGAA
1 AAAGATAAAAAGAAAAGAA
*
69307254 AAA-ATAAAAATAAAAGAA
1 AAAGATAAAAAGAAAAGAA
69307272 AAAGA-AAAA
1 AAAGATAAAA
69307281 CAAATTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (19 bp):
AAAGATAAAAAGAAAAGAA
Found at i:69309142 original size:19 final size:20
Alignment explanation
Indices: 69309110--69309147 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
69309100 GAAGAATGGA
**
69309110 GGGGAAAAGGGAAA-AGAAG
1 GGGGAAAAAAGAAAGAGAAG
69309129 GGGGAAAAAAGAAAGAGAA
1 GGGGAAAAAAGAAAGAGAA
69309148 AGGGAAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (20 bp):
GGGGAAAAAAGAAAGAGAAG
Found at i:69314079 original size:22 final size:22
Alignment explanation
Indices: 69314051--69314094 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
69314041 TGGTTTTTTA
69314051 TTGATTTCGGGTTTTGCCTCCT
1 TTGATTTCGGGTTTTGCCTCCT
*
69314073 TTGATTTTGGGTTTTGCCTCCT
1 TTGATTTCGGGTTTTGCCTCCT
69314095 CATCTTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.05, C:0.20, G:0.23, T:0.52
Consensus pattern (22 bp):
TTGATTTCGGGTTTTGCCTCCT
Found at i:69315654 original size:23 final size:23
Alignment explanation
Indices: 69315628--69315671 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
69315618 AAAAAAAGAA
69315628 AAATTA-AACTAAAAGCAAAAAGT
1 AAATTACAA-TAAAAGCAAAAAGT
*
69315651 AAATTACAATAAAAGTAAAAA
1 AAATTACAATAAAAGCAAAAA
69315672 TGGATAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.68, C:0.07, G:0.07, T:0.18
Consensus pattern (23 bp):
AAATTACAATAAAAGCAAAAAGT
Found at i:69319548 original size:11 final size:11
Alignment explanation
Indices: 69319534--69319558 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69319524 AAAATCGTAA
69319534 AAACTAATATT
1 AAACTAATATT
69319545 AAACTAATATT
1 AAACTAATATT
69319556 AAA
1 AAA
69319559 GGAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:69320218 original size:13 final size:13
Alignment explanation
Indices: 69320200--69320246 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
69320190 GGTGCACACG
69320200 GCCGTGTCGAACA
1 GCCGTGTCGAACA
*
69320213 GCCGTGTCGCAA-T
1 GCCGTGTCG-AACA
* *
69320226 GCCGTGTCGCACG
1 GCCGTGTCGAACA
69320239 GCCGTGTC
1 GCCGTGTC
69320247 TTGCTTCGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 1 0.03
13 26 0.90
14 2 0.07
ACGTcount: A:0.13, C:0.34, G:0.34, T:0.19
Consensus pattern (13 bp):
GCCGTGTCGAACA
Found at i:69327173 original size:7 final size:7
Alignment explanation
Indices: 69327161--69327189 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
69327151 TATATTACTT
69327161 TTATCAC
1 TTATCAC
69327168 TTATCAC
1 TTATCAC
69327175 TTATCAC
1 TTATCAC
69327182 TTATCAC
1 TTATCAC
69327189 T
1 T
69327190 CTTCTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45
Consensus pattern (7 bp):
TTATCAC
Found at i:69329034 original size:3 final size:3
Alignment explanation
Indices: 69329028--69329053 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
69329018 GCTTTATCAT
69329028 CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CA
69329054 GCAGCAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:69331188 original size:18 final size:19
Alignment explanation
Indices: 69331174--69331211 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
69331164 CAAAAAATAT
*
69331174 TTAAAAA-TATTAAAATCA
1 TTAAAAAGTATAAAAATCA
69331192 TTAAAAAGTATAAAAATCA
1 TTAAAAAGTATAAAAATCA
69331211 T
1 T
69331212 AATAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
TTAAAAAGTATAAAAATCA
Found at i:69331188 original size:19 final size:19
Alignment explanation
Indices: 69331146--69331208 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 19
69331136 ATTTTTAATT
*
69331146 TTAAAAAT-TTAAAAAATA
1 TTAAAAATATTTAAAAATA
**
69331164 CAAAAAATATTTAAAAATA
1 TTAAAAATATTTAAAAATA
69331183 TT-AAAATCA-TTAAAAAGTA
1 TTAAAAAT-ATTTAAAAA-TA
69331202 -TAAAAAT
1 TTAAAAAT
69331209 CATAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
18 19 0.53
19 17 0.47
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (19 bp):
TTAAAAATATTTAAAAATA
Found at i:69331399 original size:29 final size:31
Alignment explanation
Indices: 69331345--69331402 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
69331335 GAGATGATTT
69331345 GACAAATAATACAAATTTAAAAATTAAAAGA
1 GACAAATAATACAAATTTAAAAATTAAAAGA
*
69331376 GACAAATAAT-TAAA-TTAAAAATTAAAA
1 GACAAATAATACAAATTTAAAAATTAAAA
69331403 ATAACTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 13 0.50
30 3 0.12
31 10 0.38
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (31 bp):
GACAAATAATACAAATTTAAAAATTAAAAGA
Found at i:69334385 original size:17 final size:19
Alignment explanation
Indices: 69334288--69334378 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
69334278 ATAATCTTCA
69334288 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69334307 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69334326 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
69334343 ATGAT-TACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69334361 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
69334379 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:69334404 original size:22 final size:22
Alignment explanation
Indices: 69334288--69334401 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
69334278 ATAATCTTCA
69334288 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69334307 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69334326 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
69334343 ATGAT-TACAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69334361 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
69334383 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
69334402 GATTTAATTT
Statistics
Matches: 85, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 33 0.39
22 8 0.09
23 12 0.14
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:69334693 original size:18 final size:17
Alignment explanation
Indices: 69334670--69334703 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
69334660 TTTCCCTGAT
*
69334670 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
69334688 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
69334704 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Done.