Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 205 of 373
Found at i:69336499 original size:55 final size:54
Alignment explanation
Indices: 69336358--69336552 Score: 151
Period size: 55 Copynumber: 3.6 Consensus size: 54
69336348 ATTAGGGTTT
* * * ***
69336358 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTACAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACCACAAGGC
* ** * *
69336412 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACCATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGAT-AACTACCACAAGGC
** * * * * * *
69336467 TAA-GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGT-TCATAAGGC
1 -AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACCACAAGGC
* * * *
69336520 AAGGATACCACGTAAGACCATGTCAAGACATGG
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGG
69336553 AAATGGTAAG
Statistics
Matches: 112, Mismatches: 26, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 36 0.32
55 38 0.34
56 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACCACAAGGC
Found at i:69336539 original size:53 final size:53
Alignment explanation
Indices: 69336358--69336564 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
69336348 ATTAGGGTTT
* * * * *
69336358 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAG-TTCATAAGGC
* * ** * * *
69336412 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGAT-AAGT-TCATAAGGC
* * * *
69336467 TAA-GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCATAAGGC
* * * *
69336520 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTT
69336565 TAAAAAGAAA
Statistics
Matches: 122, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.36
54 37 0.30
55 37 0.30
56 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCATAAGGC
Found at i:69339255 original size:12 final size:13
Alignment explanation
Indices: 69339238--69339266 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
69339228 ATTCTAAAAT
69339238 ATTAATTAATT-A
1 ATTAATTAATTCA
69339250 ATTAATTAATTCA
1 ATTAATTAATTCA
69339263 ATTA
1 ATTA
69339267 TTTTTCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAATTAATTCA
Found at i:69340734 original size:45 final size:45
Alignment explanation
Indices: 69340666--69340754 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
69340656 ATAAATAATT
* *
69340666 TAATCATATATTTAATAAAATTATTATTA-AATATAATTTTAAAAA
1 TAATCATATATTTAATAAAATTATTAATATAAT-TAATATTAAAAA
*
69340711 TAAT-ATATAATTTAATAACATTATTAATATAATTAATATTAAAA
1 TAATCATAT-ATTTAATAAAATTATTAATATAATTAATATTAAAA
69340755 TATGAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 4 0.10
45 32 0.82
46 3 0.08
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (45 bp):
TAATCATATATTTAATAAAATTATTAATATAATTAATATTAAAAA
Found at i:69340738 original size:57 final size:57
Alignment explanation
Indices: 69340620--69340781 Score: 197
Period size: 57 Copynumber: 2.8 Consensus size: 57
69340610 GTTATTAAAT
* *
69340620 TTTAATAAGATTATTATTAAATATAA-TTTAATAAA-AATAAATAATTTAATCATATA
1 TTTAATAAAATTATTATTAAATATAATTTTAA-AAATAATATATAATTTAATCATATA
69340676 TTTAATAAAATTATTATTAAATATAATTTTAAAAATAATATATAATTTAATAACAT-TA
1 TTTAATAAAATTATTATTAAATATAATTTTAAAAATAATATATAATTTAAT--CATATA
* * *
69340734 -TTAATATAATTAATATTAAAATATGAATTAATAAAAATAATATATAAT
1 TTTAATAAAATTATTATT-AAATAT-AATT-TTAAAAATAATATATAAT
69340782 ATTCGAAAAA
Statistics
Matches: 94, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
56 28 0.30
57 34 0.36
58 8 0.09
59 7 0.07
60 17 0.18
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (57 bp):
TTTAATAAAATTATTATTAAATATAATTTTAAAAATAATATATAATTTAATCATATA
Found at i:69340790 original size:21 final size:21
Alignment explanation
Indices: 69340766--69340821 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
69340756 ATGAATTAAT
*
69340766 AAAAATAATATATAATATTCG
1 AAAAATAATATATAATATTAG
69340787 AAAAATAATATATAATATTAG
1 AAAAATAATATATAATATTAG
69340808 AAAAATAATATATA
1 AAAAATAATATATA
69340822 GCCTACTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (21 bp):
AAAAATAATATATAATATTAG
Found at i:69356647 original size:34 final size:34
Alignment explanation
Indices: 69356604--69356673 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
69356594 TTCCTTTCAT
69356604 AATTGAATACATAAATACCTTATAAGCAATGCTC
1 AATTGAATACATAAATACCTTATAAGCAATGCTC
69356638 AATTGAATACATAAATACCTTATAAGCAATGCTC
1 AATTGAATACATAAATACCTTATAAGCAATGCTC
69356672 AA
1 AA
69356674 ACCAATTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.29
Consensus pattern (34 bp):
AATTGAATACATAAATACCTTATAAGCAATGCTC
Found at i:69357664 original size:44 final size:43
Alignment explanation
Indices: 69357527--69357694 Score: 187
Period size: 43 Copynumber: 3.9 Consensus size: 43
69357517 CTCGTACAAC
* ** * *
69357527 GCCAACGTCCCAGATGTGGTCTTACATGTAATCACATATCAAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCAAT
* * * * *
69357570 GCCACTGTCCCAGACAAGGTCTTACACGAACTCATATA-CGAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCAAT
*
69357612 GCCAATGT-CCAGGACATGGTCTTACACGCAAATCACAAATCAAT
1 GCCAATGTCCCA-GACATGGTCTTACACG-AAATCACATATCAAT
**
69357656 GCCAATGTCCCAGATGTGGTCTTACACGAAATCACATAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCACATAT
69357695 TGGGATCCTA
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.03
42 25 0.25
43 46 0.45
44 25 0.25
45 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCAAT
Found at i:69363694 original size:26 final size:26
Alignment explanation
Indices: 69363663--69363770 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
69363653 TGAAATGCCC
*
69363663 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
69363689 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69363715 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69363741 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69363767 ATCA
1 ATCA
69363771 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69365991 original size:48 final size:48
Alignment explanation
Indices: 69365935--69366125 Score: 240
Period size: 48 Copynumber: 4.0 Consensus size: 48
69365925 CATTAGGGAA
*
69365935 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTTCGAGT
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGT
* * * * *
69365983 TTCATTGATTTGGATTTGGGACATGATATCGACACTTCGGGTGCGTGCT
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAG-T
* * * *
69366032 TT-ATTGATTTGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGC
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGT
* * **
69366079 TTCATTGATTTGGCTTTGGGCCATGATATTGGCACTTAAGGTGCGAG
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAG
69366126 ACTCCCGAGT
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 2 0.02
48 116 0.96
49 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGT
Found at i:69366122 original size:96 final size:96
Alignment explanation
Indices: 69365938--69366123 Score: 273
Period size: 96 Copynumber: 1.9 Consensus size: 96
69365928 TAGGGAATTC
* * * *
69365938 ATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTTCGAGTTTCATTGATTTGGATTTGGG
1 ATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCAAGCTTCATTGATTTGGATTTGGG
**
69366003 ACATGATATCGACACTTCGGGTGCGTGCTTT
66 ACATGATATCGACACTTAAGGTGCGTGCTTT
* *
69366034 ATTGATTTGGCTTCAGGCCATGATATTGGCACTTCGGGTGCAAGCTTCATTGATTTGGCTTTGGG
1 ATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCAAGCTTCATTGATTTGGATTTGGG
* * *
69366099 CCATGATATTGGCACTTAAGGTGCG
66 ACATGATATCGACACTTAAGGTGCG
69366124 AGACTCCCGA
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (96 bp):
ATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCAAGCTTCATTGATTTGGATTTGGG
ACATGATATCGACACTTAAGGTGCGTGCTTT
Found at i:69368310 original size:14 final size:13
Alignment explanation
Indices: 69368281--69368314 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
69368271 TTATGATAGG
*
69368281 AATTTTATATGAA
1 AATTTTATAAGAA
69368294 AATTTTGATAAGAA
1 AATTTT-ATAAGAA
69368308 AATTTTA
1 AATTTTA
69368315 CTGATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (13 bp):
AATTTTATAAGAA
Found at i:69379889 original size:13 final size:13
Alignment explanation
Indices: 69379871--69379895 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69379861 GAGTAATCGT
69379871 ACACGGGCGTGTC
1 ACACGGGCGTGTC
69379884 ACACGGGCGTGT
1 ACACGGGCGTGT
69379896 TCCTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:69397717 original size:46 final size:48
Alignment explanation
Indices: 69397568--69397884 Score: 223
Period size: 46 Copynumber: 6.7 Consensus size: 48
69397558 TTATTTGTGT
* * *
69397568 GCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCCAC-ATCATG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * * * * **
69397614 GCTAGTGTAAGACCATGTCTAGGACGTGGCATCGACATTGAGA-CAAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
*
69397662 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
*
69397708 GCCAGTGTAAGA-CATGTCTGAGACATGCATCGG-CTACGAGATGT---
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGA
* * * * *
69397752 GTCAGTGTAAGACCATGTTTGGGACATGGCATTGGCAC-AGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-AGA
* * * * *
69397802 GCGAGTGTAAGACCATGTCTGGGACATGACAT-TGACT--TGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCCTCGAGATGTA-GA
* *
69397849 GCTAGTGTAAGACCATATCTGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
69397885 ATTACACCCT
Statistics
Matches: 215, Mismatches: 37, Indels: 36
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.05
45 14 0.07
46 76 0.35
47 58 0.27
48 26 0.12
49 3 0.01
50 27 0.13
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:69397814 original size:50 final size:49
Alignment explanation
Indices: 69397571--69397885 Score: 174
Period size: 47 Copynumber: 6.7 Consensus size: 49
69397561 TTTGTGTGCC
* * * *
69397571 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATCAT-GA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCAT-TGGCACATGATGGATGAGCG
* * * * * *
69397617 AGTGTAAGACCATGTCTAGGACGTGGCA-TCG-ACATTGA-GACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACA-TGATG-GATGAGCG
* *
69397665 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-TCGA--GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACAT-GATGGATG--AGCG
* * *
69397711 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTACGA-GAT-G-TG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGC-AC-ATGATGGATGAGCG
*
69397755 AGTGTAAGACCATGTTTGGGACATGGCATTGGCACA-GATATGTGA-GAGCG
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACATG--ATG-GATGAGCG
* * *
69397805 AGTGTAAGACCATGTCTGGGACATGACATT-G-ACTTGATGGATGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACATGATGGATGAGCG
* *
69397852 AGTGTAAGACCATATCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCA
69397886 TTACACCCTA
Statistics
Matches: 213, Mismatches: 27, Indels: 55
0.72 0.09 0.19
Matches are distributed among these distances:
44 13 0.06
45 19 0.09
46 60 0.28
47 61 0.29
48 27 0.13
49 5 0.02
50 28 0.13
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCACATGATGGATGAGCG
Found at i:69399636 original size:37 final size:37
Alignment explanation
Indices: 69399575--69399653 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
69399565 TTATTACGAA
* * * * *
69399575 GTCTTACCCGGACATAATCTCCACATGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
69399612 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
69399649 GTCTT
1 GTCTT
69399654 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:69399848 original size:49 final size:47
Alignment explanation
Indices: 69399771--69399879 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
69399761 GCCCTTCGGG
69399771 ACTTATCACATTCATCACATCGGCCATTAGGCCCAATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCAATCAC--ATATATAC
*
69399821 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCAATCACATATATAC
69399868 ACTTTCACATTC
1 ACTTTCACATTC
69399880 TCAAAGTAAG
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 20 0.34
49 34 0.59
50 4 0.07
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.30
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCAATCACATATATAC
Found at i:69403396 original size:40 final size:40
Alignment explanation
Indices: 69403366--69403666 Score: 313
Period size: 40 Copynumber: 7.5 Consensus size: 40
69403356 AGCATGATTA
* * * *
69403366 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
69403406 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
69403446 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
69403486 CTCTTCGGAACTTAGCCTGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** *
69403526 CTCTTCGGGACTTAGCCCGGATACATGGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
69403566 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
69403607 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
69403647 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
69403667 CATCGTTCGA
Statistics
Matches: 222, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.01
40 200 0.90
41 19 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:69404013 original size:29 final size:29
Alignment explanation
Indices: 69403974--69404052 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
69403964 CTTAATAATC
*
69403974 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69404004 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69404033 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69404053 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69404095 original size:43 final size:43
Alignment explanation
Indices: 69404034--69404136 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
69404024 TGCATTTCAA
69404034 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACGTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACGTATT
*
69404077 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACGTATT
69404120 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
69404137 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACGTATT
Found at i:69406044 original size:37 final size:37
Alignment explanation
Indices: 69405994--69406072 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
69405984 TTATTACGAA
* * * *
69405994 GTCTTATCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69406031 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69406068 GTCTT
1 GTCTT
69406073 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69406267 original size:49 final size:47
Alignment explanation
Indices: 69406190--69406298 Score: 191
Period size: 49 Copynumber: 2.3 Consensus size: 47
69406180 GCCCTTCGAG
69406190 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
69406240 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
69406287 ACTTTCACATTC
1 ACTTTCACATTC
69406299 TCAAAGTAAG
Statistics
Matches: 59, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
47 20 0.34
49 35 0.59
50 4 0.07
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
Found at i:69411235 original size:22 final size:22
Alignment explanation
Indices: 69411210--69411253 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
69411200 ATTTATATTT
*
69411210 TTCTT-TTTTTTTTCATTTTCTC
1 TTCTTCTTGTTTTTC-TTTTCTC
69411232 TTCTTCTTGTTTTTCTTTTCTC
1 TTCTTCTTGTTTTTCTTTTCTC
69411254 CCCTATAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.75
Consensus pattern (22 bp):
TTCTTCTTGTTTTTCTTTTCTC
Found at i:69412787 original size:60 final size:60
Alignment explanation
Indices: 69412687--69412823 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 60
69412677 AACTATGTTA
* * *
69412687 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTGCGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
* * * *
69412747 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCTAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGGCCCAGATTAATACTG
*
69412807 ATACGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
69412824 GTTAACACTG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.06
60 49 0.75
61 12 0.18
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:69413954 original size:42 final size:42
Alignment explanation
Indices: 69413854--69413959 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 42
69413844 CTGAGATATC
* *
69413854 GTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGATATTTAT
1 GTGTAAGACCATGTCTGGGACACAGGCATCGATTGA-ATTTAT
*
69413897 GTATAAGACCATGTCTGGGACATCA-GCATCGTATCTG-ATTT-T
1 GTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAATTTAT
*
69413939 GTGTAAGACCCTGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
69413960 TAAAACATCG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
42 20 0.36
43 29 0.53
44 4 0.07
45 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGATTGAATTTAT
Found at i:69422413 original size:43 final size:43
Alignment explanation
Indices: 69422293--69422449 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
69422283 TGTGTTTTTG
* * *
69422293 TGTAAGACCATGTTTGGGAC-GTTGGCATCGACT-TGTGATTTACG
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGA-TATTTGATTT-CA
* *
69422337 TGTAAGACCATGTCTGGGACATTGACATC-ATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
* * * *
69422379 TGTAAGACCCTGTCTGGGACAGTGGCGTCGATATTCGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
*
69422422 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATGTCTGGGACAG-TGGCAT
69422450 TGTATGAGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 28 0.29
43 42 0.44
44 25 0.26
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
Found at i:69422822 original size:64 final size:64
Alignment explanation
Indices: 69422743--69422872 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
69422733 CTTATATGTG
*
69422743 TTGTAGTATGAGTTTATTTGTCTATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
69422807 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
69422871 TT
1 TT
69422873 CAACTGTTTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.19, C:0.08, G:0.23, T:0.49
Consensus pattern (64 bp):
TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
Found at i:69434422 original size:68 final size:68
Alignment explanation
Indices: 69434350--69434497 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
69434340 CATCATGTGT
* * * *
69434350 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
69434413 TGTAG
64 TGTAG
* ** * *
69434418 ACAAGAGAGC--CACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
69434481 GTAG
65 GTAG
69434485 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
69434498 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 24 0.36
65 3 0.05
66 6 0.09
67 22 0.33
68 10 0.15
69 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:69434454 original size:64 final size:64
Alignment explanation
Indices: 69434374--69434558 Score: 178
Period size: 67 Copynumber: 2.9 Consensus size: 64
69434364 AGACATTATG
* * *
69434374 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATAA
* * * * * *
69434438 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCCACGAGAT
69434503 AA
63 AA
* * * * *
69434505 AT-TGGCTGGGTCACAAGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCC
69434559 GAACTATATG
Statistics
Matches: 96, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 25 0.26
66 19 0.20
67 32 0.33
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATAA
Found at i:69455362 original size:25 final size:25
Alignment explanation
Indices: 69455328--69455377 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
69455318 CACTAGGGTT
69455328 TGGTAGAATATTGTAACATCCCAAA
1 TGGTAGAATATTGTAACATCCCAAA
69455353 TGGTAGAATATTGTAACATCCCAAA
1 TGGTAGAATATTGTAACATCCCAAA
69455378 CCCGGCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (25 bp):
TGGTAGAATATTGTAACATCCCAAA
Found at i:69480581 original size:21 final size:20
Alignment explanation
Indices: 69480551--69480589 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
69480541 GAAAACTTGT
69480551 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
69480571 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
69480590 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:69487976 original size:30 final size:30
Alignment explanation
Indices: 69487937--69487997 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69487927 TCCTTAACTC
69487937 AAACGTTTGCAAAATTACAATTTTGCCCCT
1 AAACGTTTGCAAAATTACAATTTTGCCCCT
* * * * *
69487967 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACGTTTGCAAAATTACAATTTTGCCCCT
69487997 A
1 A
69487998 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACGTTTGCAAAATTACAATTTTGCCCCT
Found at i:69495506 original size:46 final size:45
Alignment explanation
Indices: 69495372--69495540 Score: 130
Period size: 46 Copynumber: 3.7 Consensus size: 45
69495362 ATGTAACCAT
* * * *
69495372 GCCGATGCATGTCCCAAACATATCTTACACTAGCACATCTAGT--A
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCAACTCAA
* * * * *
69495416 GTCGACGCATGTCCCAGACATGTCTGACACT-G-GCTAAAATCTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CAA-CTCAA
**
69495461 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGCCTCAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCAA
**
69495507 TAACGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT
69495541 GGCTCTCATT
Statistics
Matches: 97, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 2 0.02
44 26 0.27
45 1 0.01
46 38 0.39
47 15 0.15
48 12 0.12
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCAA
Found at i:69505883 original size:83 final size:83
Alignment explanation
Indices: 69505777--69505946 Score: 277
Period size: 83 Copynumber: 2.0 Consensus size: 83
69505767 GTCAAAATAT
* * * * * *
69505777 ACTTATATATGCCACTATACCAAAATGGGATTTCTGTTTGTACCAAAATGAGATTGTGGATAGTG
1 ACTTATACAAGCCACTATACCAAAATGAGATCTCTATTTGTACCAAAATGAGATAGTGGATAGTG
69505842 TGATGACTGCTCCGACCG
66 TGATGACTGCTCCGACCG
*
69505860 ACTTATACAAGCCATTATACCAAAATGAGATCTCTATTTGTACCAAAATGAGATAGTGGATAGTG
1 ACTTATACAAGCCACTATACCAAAATGAGATCTCTATTTGTACCAAAATGAGATAGTGGATAGTG
69505925 TGATGACTGCTCCGACCG
66 TGATGACTGCTCCGACCG
69505943 ACTT
1 ACTT
69505947 CCAACCTTCG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 80 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (83 bp):
ACTTATACAAGCCACTATACCAAAATGAGATCTCTATTTGTACCAAAATGAGATAGTGGATAGTG
TGATGACTGCTCCGACCG
Found at i:69513868 original size:49 final size:49
Alignment explanation
Indices: 69513716--69513896 Score: 147
Period size: 49 Copynumber: 3.7 Consensus size: 49
69513706 GGGATAAGAT
* * ** *
69513716 GCCGACGCCATGTCCCAAACATGGTCTTACATTGACTAACACATCAA--AG
1 GCCGATGCCATGTCCCAAACA-GGTCTTACACTGACTCTCATAT-AACGAG
* * * *
69513765 TG--GATGCCATGTCCCAAAAAGGTCTTACATTGACTTTCATATATCGAG
1 -GCCGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATAACGAG
* * *
69513813 GCCGATGCTATGTCCCAAACAGGTCTTACACTGGCTCTCATCTAACG-G
1 GCCGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATAACGAG
* * * *
69513861 TGTCGATGCCATGTCCTAGACAGGTCTTTCACTGAC
1 -GCCGATGCCATGTCCCAAACAGGTCTTACACTGAC
69513897 ACACAATAAG
Statistics
Matches: 107, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
46 1 0.01
47 20 0.19
48 19 0.18
49 66 0.62
50 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATAACGAG
Found at i:69518165 original size:24 final size:24
Alignment explanation
Indices: 69518138--69518192 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
69518128 AAACTTATCA
**
69518138 ACTCACATTGCTTTACTAGTCAAT
1 ACTCACATTAATTTACTAGTCAAT
*
69518162 ACTCACTTTAATTTACTAGTCAAT
1 ACTCACATTAATTTACTAGTCAAT
69518186 ACTCACA
1 ACTCACA
69518193 ATATATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (24 bp):
ACTCACATTAATTTACTAGTCAAT
Found at i:69524190 original size:42 final size:42
Alignment explanation
Indices: 69524094--69524330 Score: 252
Period size: 42 Copynumber: 5.7 Consensus size: 42
69524084 AAGTGCCATA
* * *
69524094 CTCGATATCTCACACACTAAGTGTCGTACATAGCCGAAGCTAT
1 CTCGA-ATCTCGCACACTAAGTGTCATATATAGCCGAAGCTAT
* * *
69524137 CTC-AA-ATCGCACACTAAGTGTCATATATAGCTGAAACTAT
1 CTCGAATCTCGCACACTAAGTGTCATATATAGCCGAAGCTAT
* * * *
69524177 GTCGAATCTCGCACACTAAGTGTCGTACATAGCTGAAGCTAT
1 CTCGAATCTCGCACACTAAGTGTCATATATAGCCGAAGCTAT
* *
69524219 CTC-AA-ATCGCACACTAAGTGCCATATATAGCCGAAGCTAT
1 CTCGAATCTCGCACACTAAGTGTCATATATAGCCGAAGCTAT
* * * *
69524259 GT-GAAATCTCACACACTAAGGGCCATATATAGCCGAAGCTAT
1 CTCG-AATCTCGCACACTAAGTGTCATATATAGCCGAAGCTAT
69524301 CTCG-ATCTCGCACACTAAGTGCTACATATA
1 CTCGAATCTCGCACACTAAGTG-T-CATATA
69524331 GTTGATTCAC
Statistics
Matches: 161, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
40 62 0.39
41 22 0.14
42 67 0.42
43 10 0.06
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
CTCGAATCTCGCACACTAAGTGTCATATATAGCCGAAGCTAT
Found at i:69524237 original size:82 final size:82
Alignment explanation
Indices: 69524095--69524330 Score: 321
Period size: 82 Copynumber: 2.8 Consensus size: 82
69524085 AGTGCCATAC
69524095 TCGATATCTCACACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGTCA
1 TCGA-ATCTCACACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGTCA
*
69524160 TATATAGCTGAAACTATG
65 TATATAGCCGAAACTATG
* * *
69524178 TCGAATCTCGCACACTAAGTGTCGTACATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCAT
1 TCGAATCTCACACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGTCAT
*
69524243 ATATAGCCGAAGCTATG
66 ATATAGCCGAAACTATG
* * * * **
69524260 T-GAAATCTCACACACTAAGGGCCATATATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGCT
1 TCG-AATCTCACACACTAAGTGTCGTACATAGCCGAAGCTATCTC-AAATCGCACACTAAGTG-T
69524324 ACATATA
63 -CATATA
69524331 GTTGATTCAC
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
81 1 0.01
82 109 0.81
83 19 0.14
85 6 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (82 bp):
TCGAATCTCACACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGTCAT
ATATAGCCGAAACTATG
Found at i:69530177 original size:22 final size:23
Alignment explanation
Indices: 69530131--69530195 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
69530121 AATTGATAAT
* **
69530131 TAAAAATAAAATTCTAAAACCTAA
1 TAAAAATAAAAAT-TAAAAAGTAA
69530155 TAAAAATAAAAA-TAAAAAGTAA
1 TAAAAATAAAAATTAAAAAGTAA
***
69530177 TTTTAATAAAAATTAAAAA
1 TAAAAATAAAAATTAAAAA
69530196 CATAAAATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
22 17 0.50
23 6 0.18
24 11 0.32
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (23 bp):
TAAAAATAAAAATTAAAAAGTAA
Found at i:69530206 original size:29 final size:28
Alignment explanation
Indices: 69530152--69530206 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
69530142 TTCTAAAACC
*
69530152 TAATAAAAATAAAAATAAAAAGTAATTT
1 TAATAAAAATAAAAACAAAAAGTAATTT
69530180 TAATAAAAATTAAAAACATAAAA-TAAT
1 TAATAAAAA-TAAAAACA-AAAAGTAAT
69530207 AAATAAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 11 0.46
30 4 0.17
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (28 bp):
TAATAAAAATAAAAACAAAAAGTAATTT
Found at i:69533135 original size:68 final size:64
Alignment explanation
Indices: 69533044--69533265 Score: 214
Period size: 67 Copynumber: 3.4 Consensus size: 64
69533034 TAAAACGGGA
* * * *
69533044 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGATAGGTCGCATGGGTGATACT
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTCACATGGGTGATACT
69533109 ATG
62 ATG
* ** * * * *
69533112 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAGATGTAGCTAGGTTTCATGTGTGGTTCCAGG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCACATGGGTGATACTA--
69533176 TG
63 TG
* * ** *
69533178 AAGGACACCATGTAAACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATG
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCACATGGGTGATACTATG
69533242 TGTACACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
69533266 CAAAATTATG
Statistics
Matches: 125, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
63 20 0.16
64 23 0.18
65 2 0.02
66 23 0.18
67 29 0.23
68 27 0.22
69 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (64 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCACATGGGTGATACTATG
Found at i:69559205 original size:11 final size:11
Alignment explanation
Indices: 69559189--69559219 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
69559179 TTCCTTGTAA
69559189 AATAGTAAAAT
1 AATAGTAAAAT
69559200 AATAGTAAAAT
1 AATAGTAAAAT
69559211 AATAGTAAA
1 AATAGTAAA
69559220 GGGGAAGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26
Consensus pattern (11 bp):
AATAGTAAAAT
Found at i:69559361 original size:21 final size:21
Alignment explanation
Indices: 69559324--69559364 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
69559314 GAAAAATGAA
69559324 AAAAATAAAATTAAGAATTTGG
1 AAAAATAAAA-TAAGAATTTGG
69559346 AAAAATAAAA-ACAGAATTT
1 AAAAATAAAATA-AGAATTT
69559365 AAAGTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (21 bp):
AAAAATAAAATAAGAATTTGG
Found at i:69560142 original size:10 final size:10
Alignment explanation
Indices: 69560127--69560158 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
69560117 TAAATACATT
69560127 TAATTAAAGA
1 TAATTAAAGA
69560137 TAATTAAAGA
1 TAATTAAAGA
69560147 TAATTAAA-A
1 TAATTAAAGA
69560156 TAA
1 TAA
69560159 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:69560184 original size:27 final size:26
Alignment explanation
Indices: 69560154--69560216 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
69560144 AGATAATTAA
69560154 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
69560181 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
69560208 AATATAAAT
1 AATA-AAAT
69560217 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:69560203 original size:15 final size:15
Alignment explanation
Indices: 69560183--69560212 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69560173 ATAATCCTAA
*
69560183 TAATTATCTTAATAT
1 TAATTATCCTAATAT
69560198 TAATTATCCTAATAT
1 TAATTATCCTAATAT
69560213 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:69572284 original size:39 final size:39
Alignment explanation
Indices: 69572230--69572537 Score: 517
Period size: 39 Copynumber: 7.9 Consensus size: 39
69572220 TACCAGTACA
** * *
69572230 AAGCCTGCGGGACTTTAACCTGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
69572269 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
69572308 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
69572347 AAGCCTGCGGGACTTTGGCCCAGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
69572386 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
* *
69572425 AAGCCTGCGGGACTTTGGCACGGATACATTTCTAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
69572464 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
* *
69572503 AAGCCTGCAGGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAG
69572538 TGTCTTGCAT
Statistics
Matches: 253, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 253 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
Found at i:69573456 original size:31 final size:31
Alignment explanation
Indices: 69573413--69573472 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
69573403 ATTACACCAT
*
69573413 TAATTCATTTAAGAATATATGAAAACAAATA
1 TAATGCATTTAAGAATATATGAAAACAAATA
69573444 TAATGCATTTAAGAATATATGAAAACAAA
1 TAATGCATTTAAGAATATATGAAAACAAA
69573473 AGATGAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30
Consensus pattern (31 bp):
TAATGCATTTAAGAATATATGAAAACAAATA
Found at i:69576384 original size:27 final size:27
Alignment explanation
Indices: 69576350--69576495 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
69576340 TGGATAAGTT
*
69576350 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
69576377 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
69576404 GTAGAATTACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
69576431 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
69576458 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
69576485 GTAAAATTACC
1 GTAGAATTACC
69576496 ATTTTGCCCC
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:69577175 original size:27 final size:26
Alignment explanation
Indices: 69577131--69577181 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
69577121 CTCGCTGTAA
*
69577131 TCTGGTGGCCTCACCACATATATCTAT
1 TCTGGTGACCTCACCACA-ATATCTAT
* *
69577158 TCTGGTGACTTCATCACAATATCT
1 TCTGGTGACCTCACCACAATATCT
69577182 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCACCACAATATCTAT
Found at i:69581615 original size:46 final size:46
Alignment explanation
Indices: 69581564--69581733 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
69581554 TTGAGCATCC
*
69581564 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * * * *
69581610 AAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
* * *
69581657 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
69581703 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69581734 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.56
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:69581717 original size:93 final size:93
Alignment explanation
Indices: 69581558--69581728 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69581548 GGATGGTTGA
* *
69581558 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTAAACTCGTTGAGT
69581623 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
69581651 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTAAACTCGTTGAGT
69581716 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69581729 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69581995 original size:19 final size:20
Alignment explanation
Indices: 69581958--69581995 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69581948 ATAAGGTGGT
69581958 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
69581978 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
69581996 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:69599993 original size:13 final size:13
Alignment explanation
Indices: 69599975--69600004 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
69599965 CTGGCAATCA
69599975 TGTCACACGGCCG
1 TGTCACACGGCCG
*
69599988 TGTCACACGGGCG
1 TGTCACACGGCCG
69600001 TGTC
1 TGTC
69600005 CCTGCTGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
TGTCACACGGCCG
Found at i:69616606 original size:79 final size:81
Alignment explanation
Indices: 69616497--69616679 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
69616487 TACTCGTTCA
* *
69616497 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
69616560 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
69616577 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
69616640 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
69616656 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69616680 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:69616679 original size:40 final size:40
Alignment explanation
Indices: 69616495--69616679 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
69616485 GCTACTCGTT
* *
69616495 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
69616535 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
69616575 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
69616614 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
69616655 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69616680 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:69624742 original size:79 final size:81
Alignment explanation
Indices: 69624628--69624810 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
69624618 TACTCGTTCA
* * *
69624628 AATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
69624691 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
69624708 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
69624771 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
69624787 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69624811 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:69624810 original size:40 final size:40
Alignment explanation
Indices: 69624607--69624810 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
69624597 CGGAATTTAA
** *
69624607 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69624647 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69624687 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69624726 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69624766 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69624806 CCGGA
1 CCGGA
69624811 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69626757 original size:19 final size:20
Alignment explanation
Indices: 69626733--69626770 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69626723 GGTACCACCA
69626733 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69626752 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69626771 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69627110 original size:93 final size:93
Alignment explanation
Indices: 69627000--69627170 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
69626990 GCCCCTAAGT
* *
69627000 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69627065 CGAGTTCGGATGCCCTGTTACATCTCAC
66 CGAGTTCGGATGCCCTGTTACATCTCAC
* * *
69627093 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69627158 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69627171 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCCTGTTACATCTCAC
Found at i:69627167 original size:46 final size:46
Alignment explanation
Indices: 69626995--69627167 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
69626985 AACCCGCCCC
* * * *
69626995 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
69627041 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCCTGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CAT-TTGCATCCA
* *
69627089 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
69627134 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69627168 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:69627624 original size:30 final size:30
Alignment explanation
Indices: 69627590--69627649 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
69627580 ATTTAATACG
69627590 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** * *
69627620 AACTTTTGCATAATTACACTTTTGTCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
69627650 GGCTCGAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:69628562 original size:46 final size:48
Alignment explanation
Indices: 69628478--69628649 Score: 207
Period size: 46 Copynumber: 3.7 Consensus size: 48
69628468 TATCCGTGCT
* *
69628478 GATGCCATGTTCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGCC
* *
69628524 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCC
* * *
69628570 GATG-CATGTCCCAGACATGG-CTTACACTAGCTCT-CATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCC
69628616 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
69628650 CTCAAAGAAC
Statistics
Matches: 109, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
44 12 0.11
45 13 0.12
46 55 0.50
47 18 0.17
48 11 0.10
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCC
Found at i:69633322 original size:16 final size:16
Alignment explanation
Indices: 69633301--69633365 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
69633291 ATCTCATAAT
69633301 CATTTCTCATATTTTC
1 CATTTCTCATATTTTC
*
69633317 CATTTC-AATATTTTC
1 CATTTCTCATATTTTC
*
69633332 TCA--TCTCATA--CT-
1 -CATTTCTCATATTTTC
*
69633344 CATTTCTCATCTTTTC
1 CATTTCTCATATTTTC
69633360 CATTTC
1 CATTTC
69633366 AATATCAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
11 2 0.05
13 7 0.19
14 2 0.05
15 12 0.32
16 14 0.38
ACGTcount: A:0.20, C:0.28, G:0.00, T:0.52
Consensus pattern (16 bp):
CATTTCTCATATTTTC
Found at i:69633334 original size:43 final size:43
Alignment explanation
Indices: 69633285--69633370 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
69633275 TCATATTTCA
69633285 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
* *
69633328 TTTCTCATCTCATACTCATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
69633371 CAATCACATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
Found at i:69634688 original size:26 final size:24
Alignment explanation
Indices: 69634643--69634694 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
69634633 ACATACATTT
**
69634643 TATACAATTTATTAGTATAACATA
1 TATACAATTTATTAACATAACATA
*
69634667 TATACATATTATATTAACATAATATA
1 TATACA-ATT-TATTAACATAACATA
69634693 TA
1 TA
69634695 ATATATATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 3 0.13
26 14 0.61
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (24 bp):
TATACAATTTATTAACATAACATA
Found at i:69643244 original size:131 final size:131
Alignment explanation
Indices: 69643012--69643255 Score: 407
Period size: 131 Copynumber: 1.9 Consensus size: 131
69643002 CTAGGTTCAA
* *
69643012 CCAAGCTTCCTTTAGCGCATGTAAGTGTTTTCAAGCCCCGTTTTTAATGATTTCTATGTTTTTGA
1 CCAAGCTTCCATTAGCGCATGTAAGTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
* * *
69643077 GGTCGTTTTAGCTTAATCTAGCTAGCCCGGGGGTCAATTTGTAAAACTGCTAAAGGCTAGGTTTG
66 GGTCGTTTTAGCTTAATCTAGCTAACCCGAGAGTCAATTTGTAAAACTGCTAAAGGCTAGGTTTG
69643142 G
131 G
* *
69643143 CCAAGCTTCCATTAGTGCATGTAATTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
1 CCAAGCTTCCATTAGCGCATGTAAGTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
* *
69643208 GGTTGTTTTAGCTTAATTTAGCTAACCCGAGAGTCAATTTGTAAAACT
66 GGTCGTTTTAGCTTAATCTAGCTAACCCGAGAGTCAATTTGTAAAACT
69643256 ATTAAAGGTT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 104 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (131 bp):
CCAAGCTTCCATTAGCGCATGTAAGTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
GGTCGTTTTAGCTTAATCTAGCTAACCCGAGAGTCAATTTGTAAAACTGCTAAAGGCTAGGTTTG
G
Found at i:69645061 original size:30 final size:30
Alignment explanation
Indices: 69645018--69645110 Score: 132
Period size: 30 Copynumber: 3.1 Consensus size: 30
69645008 ACAGCCTAAC
* *
69645018 ACACGGGCGTGTGGGGTAACTCAGAGAGTT
1 ACACAGGCGTGTGGGGCAACTCAGAGAGTT
* * *
69645048 ACACAGGCATGTGGGGCAGCTCGGAGAGTT
1 ACACAGGCGTGTGGGGCAACTCAGAGAGTT
*
69645078 ACACAAGCGTGTGGGGCAACTCAGAGAGTT
1 ACACAGGCGTGTGGGGCAACTCAGAGAGTT
69645108 ACA
1 ACA
69645111 TGGCTTGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.27, C:0.19, G:0.37, T:0.17
Consensus pattern (30 bp):
ACACAGGCGTGTGGGGCAACTCAGAGAGTT
Found at i:69645734 original size:61 final size:61
Alignment explanation
Indices: 69645553--69645807 Score: 214
Period size: 61 Copynumber: 4.2 Consensus size: 61
69645543 ACAATAAAGC
* * * * * * * *
69645553 CTTTATGGAAAAATTCTGGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTTAAGGAAT-A
1 CTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTGGTGAGTACTGAATGTTAAGGAATGA
* * *
69645613 CTTTTATGGAAAAAATCTAGATA-A-GAAAGCCTTTGC-GGTGAGTACTGAATGTTAAGGAATGT
1 C-TTTATGGCAAAACTCT-GA-ACAGGAAAGCCTTT-CTGGTGAGTACTGAATGTTAAGGAATGA
* *
69645675 CTTTGTGGCAAAACTCTGAACAGGAAAGCCTTTCTGGTGAGTACTGAATGTTAAGGAATGC
1 CTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTGGTGAGTACTGAATGTTAAGGAATGA
* * * * * * * * * * *
69645736 CTTTCTAGCCAAACACTGGACATGAAAGCCTATGTGGTAAGTATTGAATGTTAAGGAA-CA
1 CTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTGGTGAGTACTGAATGTTAAGGAATGA
69645796 CCTTTATGGCAA
1 -CTTTATGGCAA
69645808 GACTTAGGGA
Statistics
Matches: 160, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
59 1 0.01
60 5 0.03
61 150 0.94
62 3 0.02
63 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (61 bp):
CTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTGGTGAGTACTGAATGTTAAGGAATGA
Found at i:69645806 original size:122 final size:122
Alignment explanation
Indices: 69645552--69645807 Score: 273
Period size: 122 Copynumber: 2.1 Consensus size: 122
69645542 GACAATAAAG
* * * * *
69645552 CCTTTATGGAAAAATTCTGGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTTAAGGAATACTTT
1 CCTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTAGCGAGTACTAAATGTTAAGGAATACTTT
* * * * **
69645617 TATGGAAAAAATCTAGATAAGAAAGCCTTTGCGGTGAGTACTGAATGTTAAGGAATG
66 TATGCAAAAAATCTAGACAAGAAAGCCTATGCGGTAAGTACTGAATGTTAAGGAACA
* * * * * *
69645674 TCTTTGTGGCAAAACTCTGAACAGGAAAGCCTTTCTGGTGAGTACTGAATGTTAAGGAATGCCTT
1 CCTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTAGCGAGTACTAAATGTTAAGGAAT-ACTT
* * * * * *
69645739 TCTA-GCCAAACA-CTGGACATGAAAGCCTATGTGGTAAGTATTGAATGTTAAGGAACA
65 T-TATGCAAAAAATCTAGACAAGAAAGCCTATGCGGTAAGTACTGAATGTTAAGGAACA
69645796 CCTTTATGGCAA
1 CCTTTATGGCAA
69645808 GACTTAGGGA
Statistics
Matches: 107, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
122 96 0.90
123 9 0.08
124 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (122 bp):
CCTTTATGGCAAAACTCTGAACAGGAAAGCCTTTCTAGCGAGTACTAAATGTTAAGGAATACTTT
TATGCAAAAAATCTAGACAAGAAAGCCTATGCGGTAAGTACTGAATGTTAAGGAACA
Found at i:69647745 original size:30 final size:30
Alignment explanation
Indices: 69647697--69647756 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
69647687 TTCTCGAGCC
* *
69647697 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* * *
69647727 TAGGGGTAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
69647757 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:69650024 original size:21 final size:21
Alignment explanation
Indices: 69649983--69650024 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
69649973 TGCCCCACCT
* *
69649983 CCCTCGATTCCTCAATCTGTA
1 CCCTCGATGCCTCAAGCTGTA
*
69650004 CCCTCGATGCCTCAAGGTGTA
1 CCCTCGATGCCTCAAGCTGTA
69650025 GATCTGATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.29
Consensus pattern (21 bp):
CCCTCGATGCCTCAAGCTGTA
Found at i:69653826 original size:64 final size:63
Alignment explanation
Indices: 69653725--69653848 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 63
69653715 TCCCATGCAT
*
69653725 AGATAAAATAACATGGGCATGTATAAAATAGTAACAGTCAAACATGCATTCATGTCAACCTATC
1 AGATAAAATAACATGGGCATGTATAAAATAGTAACAGTCAAACATGCA-TCAGGTCAACCTATC
* *
69653789 AGATAATAATAACAT-GGCATGTAGT-AGATAGTAACAGTCAAACATGTATCAGGTCAACCT
1 AGATAA-AATAACATGGGCATGTA-TAAAATAGTAACAGTCAAACATGCATCAGGTCAACCT
69653849 TAACCCTAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
63 11 0.20
64 35 0.64
65 9 0.16
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (63 bp):
AGATAAAATAACATGGGCATGTATAAAATAGTAACAGTCAAACATGCATCAGGTCAACCTATC
Found at i:69665861 original size:38 final size:40
Alignment explanation
Indices: 69665743--69665881 Score: 239
Period size: 40 Copynumber: 3.5 Consensus size: 40
69665733 NNNNNNNNNN
69665743 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
*
69665783 AAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGT-CCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
69665822 AAGGCATTTGTGCGAGTTACT-AATCC-GGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
*
69665860 AAGGCATTTGTGCGAATTACTA
1 AAGGCATTTGTGCGAGTTACTA
69665882 TAACGGCTAT
Statistics
Matches: 94, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
37 8 0.09
38 28 0.30
39 23 0.24
40 35 0.37
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
Found at i:69672054 original size:37 final size:37
Alignment explanation
Indices: 69671995--69672103 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
69671985 AGCTCAGATG
* *
69671995 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69672032 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69672069 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69672104 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:69672306 original size:48 final size:48
Alignment explanation
Indices: 69672229--69672777 Score: 909
Period size: 48 Copynumber: 11.3 Consensus size: 48
69672219 GGTCATTCGG
* *
69672229 CCACAATATACATACATCTCCTACATATTTCACACTAGCCATTCGGCTTTA
1 CCAC-ATATACAT--ATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
69672280 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
69672328 CCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTA
69672378 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
69672426 CCACAGATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
69672474 CCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
69672522 CCACATATACATATCTCATACAAATTTCACATTAGCCATTCGACTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
69672570 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
69672618 CCACATATACATACCTCATACATATTTCACAGTAGACATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
69672666 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
69672714 CCACATATACATATCTCATATATATATTTCACATTAGCCATTCAGCTTTA
1 CCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTA
69672764 CCACATATACATAT
1 CCACATATACATAT
69672778 ATTTATCTTG
Statistics
Matches: 472, Mismatches: 22, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
48 372 0.79
50 96 0.20
51 4 0.01
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:69675149 original size:44 final size:41
Alignment explanation
Indices: 69675101--69675197 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 41
69675091 ATCTATGACG
69675101 TTGGCATCGACTTATGATTTACGTGTAAAACCATGTCTGAGACA
1 TTGGCATCGA-TT-TGATTT-CGTGTAAAACCATGTCTGAGACA
* * *
69675145 TTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGGGACA
1 TTGGCATCG-ATTTGATTTCGTGTAAAACCATGTCTGAGACA
**
69675187 GAGGCATCGAT
1 TTGGCATCGAT
69675198 ATTTGATTAC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 2 0.04
42 27 0.57
43 6 0.13
44 11 0.23
45 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (41 bp):
TTGGCATCGATTTGATTTCGTGTAAAACCATGTCTGAGACA
Found at i:69675180 original size:42 final size:41
Alignment explanation
Indices: 69675101--69675236 Score: 123
Period size: 43 Copynumber: 3.2 Consensus size: 41
69675091 ATCTATGACG
* *
69675101 TTGGCATCG-ACTTATGATTTACGTGTAAAACCATGTCTGAGACA
1 TTGGCATCGTA-TT-TGATTT-CGTGTAAGACCCTGTCTG-GACA
69675145 TTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGGGACA
1 TTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCT-GGACA
** * * *
69675187 GAGGCATCGATATTTGATTACATATAAGACCAC-GTCTGGAACA
1 TTGGCATCG-TATTTGATTTCGTGTAAGACC-CTGTCTGG-ACA
69675230 TTGGCAT
1 TTGGCAT
69675237 TGTACAATCT
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
42 28 0.36
43 37 0.47
44 12 0.15
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (41 bp):
TTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGGACA
Found at i:69675201 original size:43 final size:43
Alignment explanation
Indices: 69675115--69675205 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 43
69675105 CATCGACTTA
**
69675115 TGATTTACGTGTAAAACCATGTCTGAGACATTGGCATCGTATT
1 TGATTTACGTGTAAAACCATGTCTGAGACAGAGGCATCGTATT
* * *
69675158 TGATTT-CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 TGATTTACGTGTAAAACCATGTCTGAGACAGAGGCATCG-TATT
69675201 TGATT
1 TGATT
69675206 ACATATAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 27 0.64
43 15 0.36
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTTACGTGTAAAACCATGTCTGAGACAGAGGCATCGTATT
Found at i:69675531 original size:8 final size:8
Alignment explanation
Indices: 69675518--69675542 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69675508 AATTTTGATG
69675518 ATGTTTAT
1 ATGTTTAT
69675526 ATGTTTAT
1 ATGTTTAT
69675534 ATGTTTAT
1 ATGTTTAT
69675542 A
1 A
69675543 AAGTTAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (8 bp):
ATGTTTAT
Found at i:69676789 original size:43 final size:42
Alignment explanation
Indices: 69676728--69676812 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 42
69676718 TTTGGATGGT
69676728 ATCAGAGCTACGATTTAGTCAATTCT-AGAACTAACGTAGCATA
1 ATCAGAGCTACGATTTAGTCAATT-TAAG-ACTAACGTAGCATA
* * *
69676771 ATCAGAGCTGC-AGTTTAGTCGATTTAAGACTAATGTAGCATA
1 ATCAGAGCTACGA-TTTAGTCAATTTAAGACTAACGTAGCATA
69676813 TGTGAGTCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
42 15 0.41
43 22 0.59
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (42 bp):
ATCAGAGCTACGATTTAGTCAATTTAAGACTAACGTAGCATA
Found at i:69683636 original size:17 final size:17
Alignment explanation
Indices: 69683614--69683667 Score: 99
Period size: 17 Copynumber: 3.2 Consensus size: 17
69683604 ACAATCAGAG
*
69683614 TAAACCCAATATGGACC
1 TAAACCCAATATGGGCC
69683631 TAAACCCAATATGGGCC
1 TAAACCCAATATGGGCC
69683648 TAAACCCAATATGGGCC
1 TAAACCCAATATGGGCC
69683665 TAA
1 TAA
69683668 GCCCTTTTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.39, C:0.28, G:0.15, T:0.19
Consensus pattern (17 bp):
TAAACCCAATATGGGCC
Found at i:69696297 original size:46 final size:46
Alignment explanation
Indices: 69696244--69696416 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
69696234 TAGTTGAGCA
69696244 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
69696290 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT--G
* * * *
69696335 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
69696383 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69696417 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 7 0.07
45 5 0.05
46 57 0.54
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:69696400 original size:93 final size:93
Alignment explanation
Indices: 69696241--69696411 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69696231 GGATAGTTGA
*
69696241 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
69696306 TGAGTCCGAGTTCGTGAGATGTAACTGG
66 TGAGTCCGAGTTCGTGAGATGTAACTGG
* * * *
69696334 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
69696398 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
69696412 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTGG
Found at i:69696678 original size:19 final size:20
Alignment explanation
Indices: 69696641--69696678 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69696631 ATAAGGTTGT
69696641 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
69696661 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
69696679 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:69699831 original size:93 final size:93
Alignment explanation
Indices: 69699672--69699843 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69699662 CGCCCATAAG
* * *
69699672 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAAATCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
*
69699737 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGGTCGGATGCCTAGTTACATCTCA
* * *
69699765 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
69699830 ACGAGGTCGGATGC
66 ACGAGGTCGGATGC
69699844 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
ACGAGGTCGGATGCCTAGTTACATCTCA
Found at i:69699833 original size:46 final size:46
Alignment explanation
Indices: 69699665--69699840 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
69699655 TGTAACCCGC
* * * *
69699665 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
69699711 CCATGAGTGAAATCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
69699761 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
69699804 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69699841 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:69702271 original size:29 final size:26
Alignment explanation
Indices: 69702227--69702280 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 26
69702217 GAACAAAGAT
69702227 AACAAGAAAACCGAATAAAGAAATCC
1 AACAAGAAAACCGAATAAAGAAATCC
69702253 AACATAGAGAAACCAGAATAAAGAAATC
1 AACA-AGA-AAACC-GAATAAAGAAATC
69702281 TAGAATAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 3 0.12
28 5 0.20
29 13 0.52
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (26 bp):
AACAAGAAAACCGAATAAAGAAATCC
Found at i:69702287 original size:15 final size:15
Alignment explanation
Indices: 69702230--69702308 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69702220 CAAAGATAAC
*
69702230 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69702244 AAGAAATCCA-ACATA
1 AAGAAATCCAGA-ATA
*
69702259 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
*
69702273 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* *
69702288 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69702303 AAGAAA
1 AAGAAA
69702309 GCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 20 0.38
15 33 0.62
ACGTcount: A:0.59, C:0.13, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69705411 original size:46 final size:46
Alignment explanation
Indices: 69705250--69705425 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
69705240 TGTAACCCGC
* * * *
69705250 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * * *
69705296 CCATGAGTGAAATCGGACTCAAATCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
69705346 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
69705389 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69705426 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:69705416 original size:93 final size:93
Alignment explanation
Indices: 69705257--69705428 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69705247 CGCCCATAAG
* * *
69705257 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAAATCGGACTCAAATCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAAATCA
69705322 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
69705350 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAAATCA
69705415 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69705429 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAAATCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69709305 original size:47 final size:49
Alignment explanation
Indices: 69709183--69709361 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 49
69709173 TGTAACCCGC
* *
69709183 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G--TGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
* * * *
69709229 CCATGAGTGAAATTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
69709279 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
69709322 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
69709362 TCAACCATCC
Statistics
Matches: 108, Mismatches: 14, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:69709349 original size:93 final size:93
Alignment explanation
Indices: 69709190--69709361 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
69709180 CGCCCATAAG
*** * *
69709190 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCACATCCATGAGTGAAATTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAAATCGGACTCAACTCA
69709255 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* ** *
69709283 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAAATCGGACTCAACTCA
69709348 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69709362 TCAACCATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAAATCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69711794 original size:15 final size:15
Alignment explanation
Indices: 69711746--69711825 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
69711736 CAAAGATAAC
*
69711746 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69711760 AAGAAATCCA-ACATA
1 AAGAAATCCAGA-ATA
* *
69711775 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
69711790 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* * *
69711805 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
69711820 AAGAAA
1 AAGAAA
69711826 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.16, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69714220 original size:40 final size:40
Alignment explanation
Indices: 69714149--69714320 Score: 276
Period size: 40 Copynumber: 4.3 Consensus size: 40
69714139 AAACCAAGTA
* * * *
69714149 CCTTCGGGATTTAG-CCGGATATAGCT-TCTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
69714188 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69714228 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69714268 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69714308 CCTTCGGGACTTA
1 CCTTCGGGACTTA
69714321 TCTCGGTTAT
Statistics
Matches: 125, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69722159 original size:40 final size:40
Alignment explanation
Indices: 69722076--69722253 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
69722066 AAACCAAGTA
* * * *
69722076 CCTTCGGGATTTAG-CCGGATATAGCT-TCTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69722115 CCTTCGGGACTTAGCCCGGATATAGTAACTGGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69722155 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69722195 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69722235 CCTTCGGGACTTATCCCGG
1 CCTTCGGGACTTAGCCCGG
69722254 TTATCATCCG
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69726018 original size:93 final size:93
Alignment explanation
Indices: 69725859--69726030 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69725849 CGCCCATAAG
* **
69725859 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
69725924 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
69725952 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
69726017 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69726031 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69726025 original size:46 final size:45
Alignment explanation
Indices: 69725860--69726027 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
69725850 GCCCATAAGC
* * * * *
69725860 GAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA-CAGT
* *
69725906 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC---
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CACAGT
69725953 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAC-AGT
69725999 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
69726028 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
46 56 0.54
47 29 0.28
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCACAGT
Found at i:69732754 original size:46 final size:46
Alignment explanation
Indices: 69732701--69732876 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
69732691 TGGTTGAGCA
*
69732701 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* *** * * * *
69732747 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGACGTA-AC-TAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGAATG
* * *
69732792 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* *
69732840 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69732877 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.66
47 31 0.30
48 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
Found at i:69732857 original size:93 final size:93
Alignment explanation
Indices: 69732698--69732868 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69732688 GGATGGTTGA
*
69732698 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGCCCGAACTCATTGAGT
69732763 TGAGTCCGAGTTCGAGAGACGTAACTAG
66 TGAGTCCGAGTTCGAGAGACGTAACTAG
* * * * *
69732791 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGCCCGAACTCATTGAGT
69732856 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69732869 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGACGTAACTAG
Found at i:69738785 original size:17 final size:18
Alignment explanation
Indices: 69738763--69738796 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69738753 CACATTGAAG
69738763 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
69738780 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
69738797 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:69742441 original size:28 final size:29
Alignment explanation
Indices: 69742403--69742465 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
69742393 AAGTCTGCAT
*
69742403 ACATGCATATGGCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
69742431 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
69742460 ACATTC
1 ACATTC
69742466 GTATACATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:69742721 original size:16 final size:18
Alignment explanation
Indices: 69742680--69742722 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
69742670 GTAGCCAAAC
69742680 TTTCGGC-TTTTCGACAT
1 TTTCGGCATTTTCGACAT
69742697 TTT-GGCATTTT-GAC-T
1 TTTCGGCATTTTCGACAT
69742712 TTTCGGCATTT
1 TTTCGGCATTT
69742723 CGGGATTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.17
16 13 0.54
17 7 0.29
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.51
Consensus pattern (18 bp):
TTTCGGCATTTTCGACAT
Found at i:69752478 original size:37 final size:37
Alignment explanation
Indices: 69752417--69752495 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
69752407 TTATTACGAA
* *
69752417 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
69752454 GTCTTACCCGGACCA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGA-CATAATCCCCACACGAAGTCATCGG
69752491 GTCTT
1 GTCTT
69752496 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:69752692 original size:47 final size:47
Alignment explanation
Indices: 69752614--69753122 Score: 901
Period size: 47 Copynumber: 10.8 Consensus size: 47
69752604 CCCTTCGGGA
* * * * * *
69752614 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69752661 CCTGTCACATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69752708 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69752755 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69752802 CTTATCACATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69752849 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69752896 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69752945 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69752992 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69753039 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69753086 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
69753123 AATCCTAAAT
Statistics
Matches: 444, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 397 0.89
49 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69753027 original size:237 final size:235
Alignment explanation
Indices: 69752614--69753122 Score: 901
Period size: 237 Copynumber: 2.2 Consensus size: 235
69752604 CCCTTCGGGA
* * * * * *
69752614 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
69752679 TTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
69752744 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
69752809 CATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
196 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69752849 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
69752914 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
69752979 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
69753044 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69753086 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
69753123 AATCCTAAAT
Statistics
Matches: 261, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
235 47 0.18
237 214 0.82
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (235 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69754576 original size:37 final size:37
Alignment explanation
Indices: 69754526--69754604 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69754516 TTATTACGAA
* * *
69754526 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69754563 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69754600 GTCTT
1 GTCTT
69754605 TAGAGCTCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69754801 original size:47 final size:47
Alignment explanation
Indices: 69754723--69755186 Score: 802
Period size: 47 Copynumber: 9.8 Consensus size: 47
69754713 CCCTTCGGGA
* * * * * *
69754723 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69754770 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69754817 CTTATCACATATATAAACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69754864 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69754911 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69754958 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69755007 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69755054 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69755103 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69755150 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
69755187 AATCCTAAAT
Statistics
Matches: 399, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 305 0.76
49 94 0.24
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69754999 original size:96 final size:94
Alignment explanation
Indices: 69754723--69755186 Score: 802
Period size: 96 Copynumber: 4.9 Consensus size: 94
69754713 CCCTTCGGGA
* * * * * * * *
69754723 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69754788 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
69754817 CTTATCACATATATAAACTTTCACATTCATCACATCGGCGATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69754882 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
69754911 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
69754976 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
69755007 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
69755072 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
69755103 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69755168 TTTCACATTCATCACATCG
66 TTTCACATTCATCACATCG
69755187 AATCCTAAAT
Statistics
Matches: 356, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 166 0.47
96 190 0.53
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:69755036 original size:143 final size:143
Alignment explanation
Indices: 69754723--69755186 Score: 801
Period size: 143 Copynumber: 3.3 Consensus size: 143
69754713 CCCTTCGGGA
* * * * * * * *
69754723 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69754788 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-A-ACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
69754851 TCGGCGATTAGGC
131 TCGGCCATTAGGC
69754864 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69754929 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
69754994 TCGGCCATTAGGC
131 TCGGCCATTAGGC
69755007 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
69755072 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
69755135 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
69755150 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
69755187 AATCCTAAAT
Statistics
Matches: 310, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
141 101 0.33
142 1 0.00
143 161 0.52
145 47 0.15
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:69757108 original size:56 final size:56
Alignment explanation
Indices: 69757041--69757160 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
69757031 TATTAGTTTA
*
69757041 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATATTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
69757097 TTGCCCATGCTTCTTATATTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATATTATTCTTCCATTAACACAACATGTTTCATGACATGTT
69757153 TTGCCCAT
1 TTGCCCAT
69757161 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATATTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:69757908 original size:44 final size:44
Alignment explanation
Indices: 69757811--69757901 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
69757801 ATTCATATGT
* * *
69757811 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTTAGATTTGT
1 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
69757855 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
1 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
69757899 ATG
1 ATG
69757902 TGTGTTTACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (44 bp):
ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
Found at i:69760813 original size:46 final size:47
Alignment explanation
Indices: 69760760--69761018 Score: 164
Period size: 46 Copynumber: 5.5 Consensus size: 47
69760750 TTTGTGCACT
69760760 AGTGTAAGA-CATGTCTGGGACATGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGAGAGCC
* * * *
69760806 AGTGTAAGACCATGTCTAGGACATGGCA-T--CGACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCACATT---ATGAGAGCC
* * ** *
69760854 AGTGTAAGACACA--TCTGGGACATGAATCGGCCTTGA-GATGTA-AGCC
1 AGTGTAAGAC-CATGTCTGGGACATGCATTGGCC-ACATTATG-AGAGCC
* * * *
69760900 AGTGTAAGA-CATGTCTGGGACATGCATTGG-C-TATGA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGA-GAGCC
* * * * * *
69760944 AGTGTAAGATCATGTCTAGGACATGGCATCGGCACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGC-CACAT-TATGAGAGCC
69760994 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
69761019 GTGTCGGCCT
Statistics
Matches: 162, Mismatches: 28, Indels: 43
0.70 0.12 0.18
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 15 0.09
45 20 0.12
46 46 0.28
47 24 0.15
48 21 0.13
49 6 0.04
50 25 0.15
51 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGAGAGCC
Found at i:69761921 original size:42 final size:42
Alignment explanation
Indices: 69761862--69761945 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
69761852 ACACACGGGT
* *
69761862 GTGTGTCTAGGTCGTGTGTGATACACGGTCAGCCCCATGGGC
1 GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCCCCATGGGC
*
69761904 GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCTCCATGGGC
1 GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCCCCATGGGC
69761946 ATGTTGTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (42 bp):
GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCCCCATGGGC
Found at i:69772157 original size:46 final size:44
Alignment explanation
Indices: 69772073--69772172 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 44
69772063 GACAAAAACT
69772073 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT--GCC
* * *
69772119 AGTGTAAGATATGTCTGGGACATGCATCGG-CTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTGCC
69772163 AGTGTAAGAC
1 AGTGTAAGAC
69772173 CATATCTAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 11 0.22
45 2 0.04
46 36 0.73
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGCC
Found at i:69783579 original size:42 final size:43
Alignment explanation
Indices: 69783480--69783594 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
69783470 AATGCCAACA
* * *
69783480 TCCCAGACGTGGTCTTACATGAAATCAAACATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATCAGACATCGATGCCACTG
* * *
69783523 TCCTTA-ACAGGGTCTTACACGAAATCAGATA-CGATGCCGA-TG
1 TCC-CAGACATGGTCTTACACGAAATCAGACATCGATGCC-ACTG
*
69783565 TCCCAGACATGGTCTTACACGTAAAACAGA
1 TCCCAGACATGGTCTTACACG-AAATCAGA
69783595 AGTTAATGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
41 1 0.02
42 26 0.44
43 31 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCAGACATCGATGCCACTG
Found at i:69790470 original size:23 final size:25
Alignment explanation
Indices: 69790420--69790472 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
69790410 ATGTCATAAA
*
69790420 CATAACTTCATCATATAACTTATAC
1 CATAACTTCATCATATAACATATAC
69790445 CATAAC-TCATTCATA-AACATAT-C
1 CATAACTTCA-TCATATAACATATAC
69790468 CATAA
1 CATAA
69790473 TCAAGCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 11 0.42
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (25 bp):
CATAACTTCATCATATAACATATAC
Found at i:69792366 original size:50 final size:50
Alignment explanation
Indices: 69792278--69792488 Score: 201
Period size: 50 Copynumber: 4.2 Consensus size: 50
69792268 ATGACCTTTA
* * * * * *
69792278 ATATTCGACCACATAGGTATGTACATATATGATGTTATATTGGATCTTGT
1 ATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGATCTTGT
* * *
69792328 ATATTCGGCTATAAAGGTATGCACAAATGTGATATTATATTTGAAT-TTGT
1 ATATTCGGCCATAAAGGTATGCACATATGTGATATTATA-TTGGATCTTGT
* * * * *
69792378 ATATTCAGCCATATAA-GTAAGCACATATGTGATGTTATATTTGATCTTGC
1 ATATTCGGCCATA-AAGGTATGCACATATGTGATATTATATTGGATCTTGT
* * * ** * *
69792428 ATATTTGGCCACATAGGTATGCTTATATGTGATATTATATTTGATCTCGT
1 ATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGATCTTGT
69792478 ATATTCGGCCA
1 ATATTCGGCCA
69792489 AATGAGTGAT
Statistics
Matches: 129, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
49 5 0.04
50 117 0.91
51 7 0.05
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
ATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGATCTTGT
Found at i:69792458 original size:100 final size:100
Alignment explanation
Indices: 69792300--69792488 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 100
69792290 ATAGGTATGT
* * *
69792300 ACATATATGATGTTATATTGGATCTTGTATATTCGGCTATAAAGGTATGCACAAATGTGATATTA
1 ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
*
69792365 TATTTGAAT-TTGTATATTCAGCCATATAAGTAAGC
66 TATTTG-ATCTCGTATATTCAGCCATATAAGTAAGC
* * * * ** *
69792400 ACATATGTGATGTTATATTTGATCTTGCATATTTGGCCACATAGGTATGCTTATATGTGATATTA
1 ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
*
69792465 TATTTGATCTCGTATATTCGGCCA
66 TATTTGATCTCGTATATTCAGCCA
69792489 AATGAGTGAT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
99 2 0.03
100 74 0.97
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (100 bp):
ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
TATTTGATCTCGTATATTCAGCCATATAAGTAAGC
Found at i:69794719 original size:67 final size:65
Alignment explanation
Indices: 69794631--69794869 Score: 209
Period size: 64 Copynumber: 3.6 Consensus size: 65
69794621 CACCCATGTG
* * * ** *
69794631 ACCTAGCCAC-TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCCTTCACCTGGA-ACCACACAT
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGT--TACAAAT-AATACCACACAT
69794694 GCA
63 GCA
* * * *
69794697 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACAAGGTG-TACAAATAATATCACCCATGCG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACAAATAATACCACACATGCA
* * * * * * *
69794761 ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTG-TACACATAGTATCACCCATGCG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACAAATAATACCACACATGCA
*
69794825 ACCTAGCTACCTTATAATGTCTCGTAGCTCTCTTGTAC-ACATGGT
1 ACCTAGCTACATT-T-A--TCTCGTAGCTCTCTTGT-CTACATGGT
69794870 ATACATCCCG
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
63 1 0.01
64 83 0.56
65 1 0.01
66 10 0.07
67 29 0.20
68 23 0.16
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACAAATAATACCACACATGCA
Done.