Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 206 of 373
Found at i:69794787 original size:64 final size:64
Alignment explanation
Indices: 69794691--69794834 Score: 234
Period size: 64 Copynumber: 2.2 Consensus size: 64
69794681 TGGAACCACA
* * *
69794691 CATGCAACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
* * *
69794755 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
69794819 CATGCGACCTAGCTAC
1 CATGCGACCTAGCTAC
69794835 CTTATAATGT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
64 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
Found at i:69795400 original size:29 final size:29
Alignment explanation
Indices: 69795367--69795423 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
69795357 TCCTTAACTC
69795367 AAACTTTTGCAAAATT-ACAATTTTGCCCT
1 AAACTTTTGC-AAATTCACAATTTTGCCCT
* *
69795396 AAACTTTTGCATATTCACACTTTTGCCC
1 AAACTTTTGCAAATTCACAATTTTGCCC
69795424 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (29 bp):
AAACTTTTGCAAATTCACAATTTTGCCCT
Found at i:69797233 original size:43 final size:43
Alignment explanation
Indices: 69797186--69797273 Score: 99
Period size: 42 Copynumber: 2.0 Consensus size: 43
69797176 TCTTACATGC
69797186 AATCAAACATCGATGC-CATCGTCCCAGACAGGGCCTTACAC-TA
1 AATCAAACA-CGATGCTCAT-GTCCCAGACAGGGCCTTACACATA
* * * * *
69797229 AATCAGATACGATGCTGATGTCCCAGACATGGTCTTACACATA
1 AATCAAACACGATGCTCATGTCCCAGACAGGGCCTTACACATA
69797272 AA
1 AA
69797274 ATAGAAGTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
42 25 0.66
43 13 0.34
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (43 bp):
AATCAAACACGATGCTCATGTCCCAGACAGGGCCTTACACATA
Found at i:69799566 original size:17 final size:17
Alignment explanation
Indices: 69799544--69799579 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69799534 AATTAATATT
*
69799544 AAAATGAAAATAAAATG
1 AAAATGAAAAGAAAATG
*
69799561 AAAATGATAAGAAAATG
1 AAAATGAAAAGAAAATG
69799578 AA
1 AA
69799580 GGAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (17 bp):
AAAATGAAAAGAAAATG
Found at i:69801759 original size:47 final size:47
Alignment explanation
Indices: 69801705--69801834 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
69801695 GTGCGAATAA
* *
69801705 TACCTTGATTTGGCTATGGGCCATGGTATAAGTATTCAAAGATGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
* * * *** *
69801752 TACCTTGATTTGGCTACGGGGCATGGTATAGGTACTCCGGGGTAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
* *
69801799 TACCTTGATTTGGTTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACT
69801835 TATCGATTGT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
Found at i:69801852 original size:47 final size:48
Alignment explanation
Indices: 69801702--69801853 Score: 129
Period size: 47 Copynumber: 3.2 Consensus size: 48
69801692 TGGGTGCGAA
* *
69801702 TAATACCTTGATTTGGCTATGGGCCATGGTATAAGTA-TTCAAAGATGAG
1 TAATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTT-AACGAT-AG
* * * **
69801751 T--TACCTTGATTTGGCTACGGGGCATGGTATAGGTAC-T-CCG-GGG
1 TAATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTAACGATAG
* * *
69801794 TAAGTTACCTTGATTTGGTTATGGGCCATGGTATAGGTACTTATCGATTG
1 TAA--TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTAACGATAG
69801844 TAAT-CCTTGA
1 TAATACCTTGA
69801854 GTATTTGATT
Statistics
Matches: 82, Mismatches: 13, Indels: 18
0.73 0.12 0.16
Matches are distributed among these distances:
43 2 0.02
45 1 0.01
47 70 0.85
48 2 0.02
49 3 0.04
50 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (48 bp):
TAATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTAACGATAG
Found at i:69802832 original size:21 final size:21
Alignment explanation
Indices: 69802792--69802833 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
69802782 CCCCTCTAGA
*
69802792 TTTCAAATGGCCTAATTATAC
1 TTTCAAATGCCCTAATTATAC
69802813 TTTCAAATGACCCTAA-TATAC
1 TTTCAAATG-CCCTAATTATAC
69802834 CTCATTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (21 bp):
TTTCAAATGCCCTAATTATAC
Found at i:69805580 original size:37 final size:37
Alignment explanation
Indices: 69805530--69805601 Score: 128
Period size: 37 Copynumber: 1.9 Consensus size: 37
69805520 TGGAGATACT
69805530 TTCAAGAATACTTTATCTCTGACCTAGG-ACTCAATCA
1 TTCAAGAATACTTTATCTCTGACCT-GGAACTCAATCA
69805567 TTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
1 TTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
69805602 TTCTTTTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (37 bp):
TTCAAGAATACTTTATCTCTGACCTGGAACTCAATCA
Found at i:69814051 original size:49 final size:50
Alignment explanation
Indices: 69813962--69814204 Score: 224
Period size: 49 Copynumber: 4.9 Consensus size: 50
69813952 CCTATTGTGA
* * * * *
69813962 GGTCACGTGTGTAGTACTAAGAGCAGGTTACTACGTGTACCAGATTATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
* * * * *
69814011 GGTCGCATGTGTACTTCTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TTC
* * * ** ** *
69814062 GATCACGTGTGTAGTACTAAATGCAGGCTACTACATGT--CAGATGGTTG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
** * * *
69814110 GGTCACGCGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
* *
69814159 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
69814205 GCTTCGGCTA
Statistics
Matches: 153, Mismatches: 37, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
48 35 0.23
49 80 0.52
50 9 0.06
51 29 0.19
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
Found at i:69819793 original size:42 final size:43
Alignment explanation
Indices: 69819703--69819805 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
69819693 GTCCTGGACG
* ** *
69819703 TGGTCTTATATGTAATTCAATATCGATGCCTTTGTCCCAAATA
1 TGGTCTTATATGTAAATCAATATCGATGCCAATGTCCCAAACA
* * *
69819746 GGGTCTTACATG-AAATCAGATAT-GATGCCAATGTCCCAGACA
1 TGGTCTTATATGTAAATCA-ATATCGATGCCAATGTCCCAAACA
69819788 TGGTCTTATATGTAAATC
1 TGGTCTTATATGTAAATC
69819806 TCAATCGAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (43 bp):
TGGTCTTATATGTAAATCAATATCGATGCCAATGTCCCAAACA
Found at i:69827104 original size:38 final size:38
Alignment explanation
Indices: 69827062--69827158 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 38
69827052 GGCTTAAAGA
*
69827062 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGATAAAT
** *
69827100 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGATAAAT
* * *
69827138 CCCACAGGCCTAGTGCTGGTA
1 CCCGCAGGCTTCGTGCTGGTA
69827159 CTATATTCGG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGATAAAT
Found at i:69827164 original size:38 final size:38
Alignment explanation
Indices: 69827074--69827169 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
69827064 CGCAGGCTTC
* * * * * *
69827074 GTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGCTTC
1 GTGCTGGTAATATATCCGGGATAAATCCCACAGGCCTA
*
69827112 GTGCTGGTATTATATCCGGGATAAATCCCACAGGCCTA
1 GTGCTGGTAATATATCCGGGATAAATCCCACAGGCCTA
* *
69827150 GTGCTGGTACTATATTCGGG
1 GTGCTGGTAATATATCCGGG
69827170 CCTTCGTGCC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (38 bp):
GTGCTGGTAATATATCCGGGATAAATCCCACAGGCCTA
Found at i:69827286 original size:43 final size:43
Alignment explanation
Indices: 69827162--69827273 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
69827152 GCTGGTACTA
69827162 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
69827205 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
69827248 TATTTGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
69827274 GTAATGCCGG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:69833194 original size:30 final size:30
Alignment explanation
Indices: 69833151--69833219 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
69833141 TAAAGATAAC
*
69833151 AAGAAAACC-GAATAAAGAAATCCAAGA-TA
1 AAGAAACCCAGAATAAAGAAA-CCAAGAGTA
* *
69833180 GAGAAACCCAGAATAAAGAAACCCAGAGTA
1 AAGAAACCCAGAATAAAGAAACCAAGAGTA
69833210 AAGAAACCCA
1 AAGAAACCCA
69833220 AGATATGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.58, C:0.19, G:0.16, T:0.07
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAACCAAGAGTA
Found at i:69833199 original size:15 final size:15
Alignment explanation
Indices: 69833151--69833219 Score: 79
Period size: 15 Copynumber: 4.7 Consensus size: 15
69833141 TAAAGATAAC
*
69833151 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
69833165 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
69833180 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
69833195 AAGAAACCCAGAGTA
1 AAGAAACCCAGAATA
69833210 AAGAAACCCA
1 AAGAAACCCA
69833220 AGATATGATA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
14 9 0.19
15 37 0.79
16 1 0.02
ACGTcount: A:0.58, C:0.19, G:0.16, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:69836284 original size:49 final size:48
Alignment explanation
Indices: 69836220--69836446 Score: 283
Period size: 49 Copynumber: 4.6 Consensus size: 48
69836210 GGTACGCATA
* *
69836220 TAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTAT-CGGTACACGTAG
*
69836269 TAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCGGTACACGTAG
* ** * *
69836317 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACC-AATTATCGGTACACGTAG
* * * * *
69836366 TAGCCTGCACTTAGTACTACACATGTGATCACAGTTTTAGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACATGTGA-C-CAATTAT-CGGTACACGTAG
*
69836417 TAGCCTGCACTTAGTACTACACATGCGACC
1 TAGCCTGCACTTAGTACTACACATGTGACC
69836447 TCACAATAGA
Statistics
Matches: 157, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
48 42 0.27
49 75 0.48
50 4 0.03
51 36 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (48 bp):
TAGCCTGCACTTAGTACTACACATGTGACCAATTATCGGTACACGTAG
Found at i:69836386 original size:97 final size:100
Alignment explanation
Indices: 69836210--69836446 Score: 295
Period size: 97 Copynumber: 2.4 Consensus size: 100
69836200 AAAGCTATCT
* * * ** *
69836210 GGTACGCATA-TAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCC
69836274 TGCACTTAGTACTACACACGTGA-C-CAATTAT-C
66 TGCACTTAGTACTACACACGTGATCACAATTATAC
* * *
69836306 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-TGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGC
* * * *
69836370 CTGCACTTAGTACTACACATGTGATCACAGTTTTAG
65 CTGCACTTAGTACTACACACGTGATCACAATTATAC
* *
69836406 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
69836447 TCACAATAGA
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
96 8 0.07
97 64 0.54
98 5 0.04
99 5 0.04
100 37 0.31
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAATTATAC
Found at i:69838599 original size:15 final size:14
Alignment explanation
Indices: 69838577--69838639 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 14
69838567 AAGAAAACGA
69838577 ATAAAGAAATCCAAG
1 ATAAAGAAA-CCAAG
* *
69838592 ATAGAGAAACCCAG
1 ATAAAGAAACCAAG
*
69838606 AATAAAGAAACCCAG
1 -ATAAAGAAACCAAG
69838621 AGTAAAGAAACCCAAG
1 A-TAAAGAAA-CCAAG
69838637 ATA
1 ATA
69838640 CGATACTATG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 5 0.12
15 31 0.76
16 5 0.12
ACGTcount: A:0.57, C:0.17, G:0.16, T:0.10
Consensus pattern (14 bp):
ATAAAGAAACCAAG
Found at i:69838609 original size:30 final size:30
Alignment explanation
Indices: 69838575--69838634 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69838565 ACAAGAAAAC
*
69838575 GAATAAAGAAATCCAAGA-TAGAGAAACCCA
1 GAATAAAGAAA-CCAAGAGTAAAGAAACCCA
*
69838605 GAATAAAGAAACCCAGAGTAAAGAAACCCA
1 GAATAAAGAAACCAAGAGTAAAGAAACCCA
69838635 AGATACGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.57, C:0.18, G:0.17, T:0.08
Consensus pattern (30 bp):
GAATAAAGAAACCAAGAGTAAAGAAACCCA
Found at i:69841789 original size:50 final size:49
Alignment explanation
Indices: 69841583--69841816 Score: 296
Period size: 48 Copynumber: 4.8 Consensus size: 49
69841573 TAGCCAAAGC
* * * *
69841583 TATCTGGTACGCATA-TAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
69841631 TATC-CGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
69841679 TATCTGGTAC-CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
69841728 CATCTGATACACATAGTAGCCTGCACTT-GTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* *
69841778 TTTCGGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
69841817 TGCGACCTCA
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
47 7 0.04
48 73 0.45
49 29 0.18
50 42 0.26
51 11 0.07
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:69843737 original size:20 final size:20
Alignment explanation
Indices: 69843712--69843751 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
69843702 GGATTAAACT
*
69843712 GAACTTATTCAGAAT-TTTCA
1 GAACTTAATCA-AATATTTCA
69843732 GAACTTAATCAAATATTTCA
1 GAACTTAATCAAATATTTCA
69843752 AAGCTGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (20 bp):
GAACTTAATCAAATATTTCA
Found at i:69848355 original size:43 final size:43
Alignment explanation
Indices: 69848308--69848409 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
69848298 TCCCAGACGT
* ** *
69848308 GGTCTTATATGTAATTCA-ATATCGATGCCTTTGTCCCAAATAG
1 GGTCTTATATGTAAATCAGATA-CGATGCCAATGTCCCAAACAG
* * * *
69848351 GGTCTTACACG-AAATCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTATATGTAAATCAGATACGATGCCAATGTCCCAAACAG
69848393 GGTCTTATATGTAAATC
1 GGTCTTATATGTAAATC
69848410 TAAATCGAGG
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
42 30 0.64
43 17 0.36
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (43 bp):
GGTCTTATATGTAAATCAGATACGATGCCAATGTCCCAAACAG
Found at i:69848397 original size:42 final size:43
Alignment explanation
Indices: 69848297--69848446 Score: 110
Period size: 43 Copynumber: 3.5 Consensus size: 43
69848287 CAATGCCGAC
* * * * **
69848297 GTCCCAGACGTGGTCTTATATGTAATTCAATATCGATGCCTTT
1 GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
* * *
69848340 GTCCCAAATAGGGTCTTACACG-AAATCAGATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATCA-ATATCGATGCCAAT
* * * *
69848382 GTCCCAGACATGGTCTTATATGTAAATCTAA-ATCGA-GGCATGT
1 GTCCCAGACATGGTCTTACACGTAAATC-AATATCGATGCCA-AT
* *
69848425 GTCCCACACAAGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
69848447 ATGTCGCAGA
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
42 34 0.41
43 47 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
Found at i:69852607 original size:51 final size:50
Alignment explanation
Indices: 69852547--69852679 Score: 169
Period size: 51 Copynumber: 2.6 Consensus size: 50
69852537 TATTGTGAGG
* *
69852547 TCACGTGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTA-TCAGAT-ACTTAGA
** ** *
69852598 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTATCAGATACTTAGA
*
69852648 TCACGTGTGTAGTACTAAGTGTAGGCTACTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAC
69852680 GTGTACCGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 36 0.49
51 37 0.51
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTATCAGATACTTAGA
Found at i:69852674 original size:50 final size:51
Alignment explanation
Indices: 69852544--69852727 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 51
69852534 ATCTATTGTG
***
69852544 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATACGTACTCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
* * **
69852595 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAACTT
*
69852645 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTAC-CGGATAA-TT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAACTT
* * * * *
69852695 -GGTCGCATGTGTATTACTAGGTGCAAGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
69852728 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 27 0.24
50 47 0.42
51 38 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
Found at i:69861418 original size:47 final size:49
Alignment explanation
Indices: 69861294--69861422 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
69861284 AGGGTATAAT
*
69861294 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAA
* * * **
69861343 GCCGACGCCATCTCCCAAACATGGTCTTACACTGACTCA-T-CCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATTGAAATCGAA
** *
69861390 GTTGATGCCATGTCCTAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
69861423 AGCTCACAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 28 0.42
48 3 0.04
49 35 0.52
50 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAA
Found at i:69865950 original size:23 final size:23
Alignment explanation
Indices: 69865898--69865995 Score: 80
Period size: 22 Copynumber: 4.3 Consensus size: 23
69865888 GCAGACAAAC
* *
69865898 GGTAAGCTCAATTA-AGCTGAACA
1 GGTAAGCTCCA-TAGAGCTGAAAA
*
69865921 -GTAAGCTCCATAGTGCTGAAAA
1 GGTAAGCTCCATAGAGCTGAAAA
* *
69865943 GGTAAGCTTCGA-AGAGCT-AAAC
1 GGTAAGC-TCCATAGAGCTGAAAA
*
69865965 GGTAAGCT-CATAAGAGCTGAAAC
1 GGTAAGCTCCAT-AGAGCTGAAAA
69865988 GGTAAGCT
1 GGTAAGCT
69865996 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
20 1 0.02
21 3 0.05
22 32 0.52
23 23 0.37
24 3 0.05
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (23 bp):
GGTAAGCTCCATAGAGCTGAAAA
Found at i:69865971 original size:22 final size:24
Alignment explanation
Indices: 69865935--69865996 Score: 85
Period size: 22 Copynumber: 2.7 Consensus size: 24
69865925 GCTCCATAGT
*
69865935 GCTGAAAAGGTAAGCTTC-GAAGA
1 GCTGAAACGGTAAGCTTCAGAAGA
*
69865958 GCT-AAACGGTAAGC-TCATAAGA
1 GCTGAAACGGTAAGCTTCAGAAGA
69865980 GCTGAAACGGTAAGCTT
1 GCTGAAACGGTAAGCTT
69865997 GTACGAGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 2 0.06
22 17 0.50
23 14 0.41
24 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.19
Consensus pattern (24 bp):
GCTGAAACGGTAAGCTTCAGAAGA
Found at i:69866004 original size:23 final size:23
Alignment explanation
Indices: 69865935--69866006 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
69865925 GCTCCATAGT
*
69865935 GCTGAAAAGGTAAGCTTCG-AAGA
1 GCTGAAACGGTAAGCTT-GTAAGA
**
69865958 GCT-AAACGGTAAGCTCATAAGA
1 GCTGAAACGGTAAGCTTGTAAGA
*
69865980 GCTGAAACGGTAAGCTTGTACGA
1 GCTGAAACGGTAAGCTTGTAAGA
69866003 GCTG
1 GCTG
69866007 TGGTGAGTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 18 0.44
23 23 0.56
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (23 bp):
GCTGAAACGGTAAGCTTGTAAGA
Found at i:69873153 original size:129 final size:129
Alignment explanation
Indices: 69872921--69873174 Score: 280
Period size: 129 Copynumber: 2.0 Consensus size: 129
69872911 TCATATAGGC
** * * *
69872921 ATGTGACCCACTCACACAGCCATATGGCCTATCTTATACGAGCATGGCTCTTCTACACGGTTTAC
1 ATGTGACCCACTCACACAGCCATATGGCCTATCACACACGAGCATGGCTCTTCTAAAAGGTTTAC
**
69872986 CAACATAGTTGTGTGGTTAATCCCACACAAGCTAAGCTTTCA-CACACGGCCAAGGGACACGGGA
66 CAACATAGCAGTGTGGTTAATCCCACACAAGCTAAGCTTT-AGCACACGGCCAAGGGACACGGGA
* * * *
69873050 ATGTGACCCACTCACACGGCCATGTGGCCTATCACACATGAGCATGGCTCTTGTAAAAGGTTTAT
1 ATGTGACCCACTCACACAGCCATATGGCCTATCACACACGAGCATGGCTCTTCTAAAAGGTTTA-
* * * *** * * *
69873115 CGATACA-A-CAGTGTGGTTAATTCCTCATGGGCTGAGCTTTAGTACATGGCCAAGGGACAC
65 CCA-ACATAGCAGTGTGGTTAATCCCACACAAGCTAAGCTTTAGCACACGGCCAAGGGACAC
69873175 AGTCATGTAA
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
128 1 0.01
129 95 0.93
130 3 0.03
131 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (129 bp):
ATGTGACCCACTCACACAGCCATATGGCCTATCACACACGAGCATGGCTCTTCTAAAAGGTTTAC
CAACATAGCAGTGTGGTTAATCCCACACAAGCTAAGCTTTAGCACACGGCCAAGGGACACGGGA
Found at i:69874393 original size:30 final size:30
Alignment explanation
Indices: 69874357--69874416 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69874347 TTCCCAAGCC
*
69874357 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
69874387 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
69874417 CATATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:69877023 original size:24 final size:23
Alignment explanation
Indices: 69876979--69877023 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
69876969 TACATCAGTG
69876979 AAAGATTTATTGATTAGAAGCGT
1 AAAGATTTATTGATTAGAAGCGT
*
69877002 AAAGAGTTTCTTGAATTA-AAGC
1 AAAGA-TTTATTG-ATTAGAAGC
69877024 AGGGGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
AAAGATTTATTGATTAGAAGCGT
Found at i:69889007 original size:27 final size:31
Alignment explanation
Indices: 69888975--69889031 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 31
69888965 GTGCATTATA
*
69888975 AATATATAT-TGAA-TT-AAGT-TGTAAAAG
1 AATATAAATGTGAAGTTGAAGTATGTAAAAG
69889002 AATATAAATGTGAAGTTGAAGTATGTAAAA
1 AATATAAATGTGAAGTTGAAGTATGTAAAA
69889032 TATGAATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 8 0.32
28 4 0.16
29 2 0.08
30 4 0.16
31 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (31 bp):
AATATAAATGTGAAGTTGAAGTATGTAAAAG
Found at i:69890969 original size:48 final size:48
Alignment explanation
Indices: 69890920--69891146 Score: 224
Period size: 48 Copynumber: 4.7 Consensus size: 48
69890910 AGTTATGTGA
* * * * *
69890920 GATCCCATGTAAAACCATGTCTAGGACATGGCATTGGCATCGAGATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGT
* * * * * * *
69890968 GATCCCGTATAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGT
* * *
69891016 G-TGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACG-TGT
1 GATCCCA-TGTAAGACCATGTCTGGGACATGGCATCGACATCGA-GATGT
* * * *
69891064 GAGCCAATGTAAGACCATGTCTGGGACATGGAATCGACATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGT
** *
69891112 GATTTCGTGTAAGACCATGTCTGGGACATGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATC
69891147 ATTATGAGAC
Statistics
Matches: 144, Mismatches: 31, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
47 2 0.01
48 140 0.97
49 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGT
Found at i:69891047 original size:96 final size:96
Alignment explanation
Indices: 69890927--69891146 Score: 255
Period size: 96 Copynumber: 2.3 Consensus size: 96
69890917 TGAGATCCCA
* * * * * ** *
69890927 TGTAAAACCATGTCTAGGACATGGCATTGGCATCGA-GATGAGATCCCGTATAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGACG-TGAGAGCCAATATAAGACCATGTCTG
* * * *
69890991 GGACATGGCATCGGCGTTGATATGTG-TGCTAG
65 GGACATGGAATCGACATCGATATGTGAT-CTAG
* * *
69891023 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGACGTGTGAGCCAATGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGACGTGAGAGCCAATATAAGACCATGTCTGG
* *
69891088 GACATGGAATCGACATCGATATGTGATTTCG
66 GACATGGAATCGACATCGATATGTGATCTAG
69891119 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
69891147 ATTATGAGAC
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
96 103 0.98
97 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATCGACGTGAGAGCCAATATAAGACCATGTCTGG
GACATGGAATCGACATCGATATGTGATCTAG
Found at i:69897999 original size:30 final size:30
Alignment explanation
Indices: 69897984--69898060 Score: 145
Period size: 30 Copynumber: 2.6 Consensus size: 30
69897974 TGTGTCTCAG
*
69897984 CCGTGTGTGACACACGGCCAGGTCACATGA
1 CCGTGTGTGACACACGGCCAGGTCACACGA
69898014 CCGTGTGTGACACACGGCCAGGTCACACGA
1 CCGTGTGTGACACACGGCCAGGTCACACGA
69898044 CCGTGTGTGACACACGG
1 CCGTGTGTGACACACGG
69898061 TTTGTATATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (30 bp):
CCGTGTGTGACACACGGCCAGGTCACACGA
Found at i:69898059 original size:17 final size:17
Alignment explanation
Indices: 69898007--69898059 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
69897997 ACGGCCAGGT
*
69898007 CACATGACCGTGTGTGA
1 CACACGACCGTGTGTGA
* *
69898024 CACACGGCC-AG-GT--
1 CACACGACCGTGTGTGA
69898037 CACACGACCGTGTGTGA
1 CACACGACCGTGTGTGA
69898054 CACACG
1 CACACG
69898060 GTTTGTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
13 8 0.30
14 1 0.04
15 4 0.15
16 1 0.04
17 13 0.48
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (17 bp):
CACACGACCGTGTGTGA
Found at i:69903899 original size:28 final size:28
Alignment explanation
Indices: 69903867--69903922 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
69903857 AAAACTAGGA
69903867 AAGAAGTAATGGAAATATTAAAAAGATT
1 AAGAAGTAATGGAAATATTAAAAAGATT
*
69903895 AAGAAGTAATGGAAATTTTAAAAAGATT
1 AAGAAGTAATGGAAATATTAAAAAGATT
69903923 TAGTGAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (28 bp):
AAGAAGTAATGGAAATATTAAAAAGATT
Found at i:69905572 original size:40 final size:40
Alignment explanation
Indices: 69905517--69905694 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
69905507 TGGATGATAA
*
69905517 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69905557 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
69905597 TCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
69905637 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
69905677 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69905695 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69931397 original size:40 final size:40
Alignment explanation
Indices: 69931327--69931544 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
69931317 TATTCGAATG
69931327 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
69931366 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
69931406 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
69931446 ATATCCGGGCTAAGTCCCGAAGGC--TTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
69931484 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
69931523 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69931545 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
38 50 0.29
39 30 0.18
40 90 0.53
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:69938265 original size:26 final size:26
Alignment explanation
Indices: 69938236--69938288 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
69938226 TCCAACATGC
*
69938236 ATTTAGGTCAATTTA-CTCTTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
69938262 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
69938288 A
1 A
69938289 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:69939559 original size:12 final size:12
Alignment explanation
Indices: 69939542--69939636 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
69939532 GCCAACTCCC
*
69939542 GCTCCTTGATCA
1 GCTCCTTAATCA
* *
69939554 GCTCCTAAATCT
1 GCTCCTTAATCA
* *
69939566 TCTCCTTTATCA
1 GCTCCTTAATCA
* *
69939578 GCTCCTAAATCC
1 GCTCCTTAATCA
*
69939590 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
* *
69939602 GCTCCTAAATCC
1 GCTCCTTAATCA
*
69939614 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
69939626 GCTCCTAAATC
1 GCTCCTTAATC
69939637 TTCTCCTGAC
Statistics
Matches: 57, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.11
12 45 0.79
13 6 0.11
ACGTcount: A:0.21, C:0.38, G:0.06, T:0.35
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:69939577 original size:24 final size:24
Alignment explanation
Indices: 69939543--69939643 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
69939533 CCAACTCCCG
* *
69939543 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCCT
69939567 CTCCTTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCCT
*
69939591 CTCCCTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCCT
* *
69939615 CTCCCTTATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCCT
69939639 CTCCT
1 CTCCT
69939644 GACAGCCTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.20, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCCT
Found at i:69940230 original size:48 final size:46
Alignment explanation
Indices: 69940178--69940402 Score: 186
Period size: 48 Copynumber: 4.7 Consensus size: 46
69940168 ATGTAAAGGT
69940178 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCGTCTCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CC-TCTCAATAC
* * * * *
69940226 CGATGCCATGTCCCAAACATGGTCTTACACTGGCT-CTCATGATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCTC-TCA-AT-AC
* * * * * *
69940274 CGATGCCATGTCCTAGACATAGTCTTACACTAGCGCACATATCAACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-C-TCTCAATAC
* * **
69940322 CGATGCCATGTCCCAGACATGGTCTTACACTCA-CT-CTCATGATGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCCTC-TCA-AT-AC
*
69940370 TGATGCCATGTCCCAGACATGGTCTTACACTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG
69940403 TACACATATC
Statistics
Matches: 141, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.02
46 6 0.04
47 2 0.01
48 125 0.89
49 1 0.01
50 3 0.02
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCTCTCAATAC
Found at i:69940293 original size:96 final size:96
Alignment explanation
Indices: 69940129--69940413 Score: 349
Period size: 96 Copynumber: 3.0 Consensus size: 96
69940119 GAGTAAATTG
* * * * **
69940129 CCGATGCCATGT-CCAAGATATGGTCTTATAATGGCTCACATG-TAAAGGTCGATGCCATGTCCC
1 CCGATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCTCATGAT-GTGGTCGATGCCATGTCCC
* * * * *
69940192 AGACATGGTCTTACACTAGCTCCCGTCTCAATA
64 AGACATGGTCTTACACTAGCGCACATATCAACA
* *
69940225 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGTCGATGCCATGTCCCAG
*
69940290 ACATAGTCTTACACTAGCGCACATATCAACA
66 ACATGGTCTTACACTAGCGCACATATCAACA
* * ** *
69940321 TCGATGCCATGTCCCAGACATGGTCTTACACTCACTCTCATGATGTGGTTGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGTCGATGCCATGTCCCAG
**
69940386 ACATGGTCTTACACTAGTACACATATCA
66 ACATGGTCTTACACTAGCGCACATATCA
69940414 CCCAAATGTC
Statistics
Matches: 163, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
96 158 0.97
97 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGTCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCGCACATATCAACA
Found at i:69949991 original size:18 final size:18
Alignment explanation
Indices: 69949968--69950034 Score: 89
Period size: 18 Copynumber: 3.7 Consensus size: 18
69949958 GAACGATTAT
*
69949968 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAG
* *
69949986 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* *
69950004 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAG
69950022 TTATTCAGTAACA
1 TTATTCAGTAACA
69950035 GTCGATATTA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:69950256 original size:45 final size:45
Alignment explanation
Indices: 69950180--69950286 Score: 144
Period size: 45 Copynumber: 2.4 Consensus size: 45
69950170 CAGAACAAAT
**
69950180 TCGA-AACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAA
1 TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA
** * *
69950224 TCGATAATGGTAACAGTATCAGTATTCGACACACAAAGTGCCGAA
1 TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA
*
69950269 TCGGTAACAGTAACAGTA
1 TCGATAACAGTAACAGTA
69950287 GTCGGCACAT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 4 0.08
45 49 0.92
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA
Found at i:69952022 original size:19 final size:19
Alignment explanation
Indices: 69951995--69952032 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69951985 TTTCATTCTG
*
69951995 TTTCTTTTCTATCTT-TTTT
1 TTTCATTTCT-TCTTCTTTT
69952014 TTTCATTTCTTCTTCTTTT
1 TTTCATTTCTTCTTCTTTT
69952033 GTTTTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTCATTTCTTCTTCTTTT
Found at i:69952188 original size:31 final size:32
Alignment explanation
Indices: 69952132--69952194 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
69952122 CACACTTGTC
*
69952132 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
69952164 ATAATATAAT-TATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
69952195 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:69956932 original size:18 final size:18
Alignment explanation
Indices: 69956909--69956992 Score: 105
Period size: 18 Copynumber: 4.6 Consensus size: 18
69956899 GAACGATTAT
*
69956909 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAA
*
69956927 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
69956945 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAA
*
69956963 TTATTCAGTAACAATTAAA
1 TTATTCAGTAACAA-TCAA
69956982 TTATTCAGTAA
1 TTATTCAGTAA
69956993 TAGTCGATCT
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 42 0.76
19 13 0.24
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:69956950 original size:36 final size:37
Alignment explanation
Indices: 69956909--69956992 Score: 125
Period size: 36 Copynumber: 2.3 Consensus size: 37
69956899 GAACGATTAT
* *
69956909 TTATTCAGTAACAATCAGTTATTCGGTAACAA-TCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATTAAA
* *
69956945 TTATTCAATAATAATCAGTTATTCAGTAACAATTAAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATTAAA
69956982 TTATTCAGTAA
1 TTATTCAGTAA
69956993 TAGTCGATCT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 29 0.69
37 13 0.31
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (37 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATTAAA
Found at i:69957242 original size:45 final size:45
Alignment explanation
Indices: 69957187--69957291 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
69957177 GCTGAAACAG
*
69957187 TAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCTGAATCGA
1 TAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCCGAATCGA
* * * * *
69957232 TAACGGTAACAGTATCAGTATTCGACACACAAAGTGCCGAATTGG
1 TAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCCGAATCGA
69957277 TAACAGTAACAGTAG
1 TAACAGTAACAGTAG
69957292 TCAACACATA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCCGAATCGA
Found at i:69957279 original size:39 final size:40
Alignment explanation
Indices: 69957192--69957307 Score: 112
Period size: 45 Copynumber: 2.8 Consensus size: 40
69957182 AACAGTAACA
* *
69957192 GTAACAGTAGCAGTATTCAACACACAAAGTGCTGAATCGATAACG
1 GTAACAGTAACAGTATTC-ACACACAAAGTGCCGAAT--AT-A-G
*
69957237 GTAACAGTATCAGTATTCGACACACAAAGTGCCGAAT-T-G
1 GTAACAGTAACAGTATTC-ACACACAAAGTGCCGAATATAG
*
69957276 GTAACAGTAACAGTAGTCA-ACACATAAGTGCC
1 GTAACAGTAACAGTATTCACACACA-AAGTGCC
69957308 TGATCAGTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
37 5 0.08
38 8 0.12
39 17 0.26
42 1 0.02
45 34 0.52
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.21
Consensus pattern (40 bp):
GTAACAGTAACAGTATTCACACACAAAGTGCCGAATATAG
Found at i:69958735 original size:27 final size:26
Alignment explanation
Indices: 69958679--69958735 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
69958669 CAACCTTAAC
* * *
69958679 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
69958705 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
69958732 CCTA
1 CCTA
69958736 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:69961984 original size:39 final size:38
Alignment explanation
Indices: 69961930--69962192 Score: 375
Period size: 39 Copynumber: 6.8 Consensus size: 38
69961920 TGTGTGAGAT
* *
69961930 TTATATCCGGGCTAAGTCCCGAAAGCATTCGTGCTAGTA
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCT-GTA
69961969 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTG-TA
*
69962008 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCT-GTA
69962047 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCT-GTA
69962086 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTG-TA
* * * *
69962125 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAATG
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCT-GTA
* *
69962164 TTATATCC-AGGTTAAGTTCCGAAGGCATT
1 TTATATCCGA-GCTAAGTCCCGAAGGCATT
69962193 TGGGTTGGAA
Statistics
Matches: 207, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
38 2 0.01
39 204 0.99
40 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (38 bp):
TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGTA
Found at i:69962059 original size:78 final size:78
Alignment explanation
Indices: 69961930--69962192 Score: 418
Period size: 78 Copynumber: 3.4 Consensus size: 78
69961920 TGTGTGAGAT
* *
69961930 TTATATCCGGGCTAAGTCCCGAAAGCATTCGTGCTAGTATTATATCCGAGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGAGCTAAGTCCCGAAGGC
69961995 ATTCGTGCTGATA
66 ATTCGTGCTGATA
69962008 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGAGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGAGCTAAGTCCCGAAGGC
*
69962073 ATTCGTGCTGGTA
66 ATTCGTGCTGATA
* * * *
69962086 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCTGGGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGAGCTAAGTCCCGAAGGC
* *
69962151 ATTCGTGCTAATG
66 ATTCGTGCTGATA
* * *
69962164 TTATATCCAGGTTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
69962193 TGGGTTGGAA
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 171 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (78 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGAGCTAAGTCCCGAAGGC
ATTCGTGCTGATA
Found at i:69962137 original size:117 final size:117
Alignment explanation
Indices: 69961930--69962192 Score: 429
Period size: 117 Copynumber: 2.2 Consensus size: 117
69961920 TGTGTGAGAT
* *
69961930 TTATATCCGGGCTAAGTCCCGAAAGCATTCGTGCTAGTATTATATCCGAGCTAAGTCCCGAAGGC
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTAGTATTATATCCGAGCTAAGTCCCGAAGGC
**
69961995 ATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
66 ATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAATA
*
69962047 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGAGCTAAGTCCCGAAGGC
1 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTAGTATTATATCCGAGCTAAGTCCCGAAGGC
* *
69962112 ATTCGTGCTGATATTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAATG
66 ATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAATA
* *
69962164 TTATATCC-AGGTTAAGTTCCGAAGGCATT
1 TTATATCCGA-GCTAAGTCCCGAAGGCATT
69962193 TGGGTTGGAA
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
116 1 0.01
117 135 0.99
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (117 bp):
TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTAGTATTATATCCGAGCTAAGTCCCGAAGGC
ATTCGTGCTGATATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAATA
Found at i:69970267 original size:15 final size:15
Alignment explanation
Indices: 69970228--69970307 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69970218 GTATCTTGGG
*
69970228 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
69970243 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
69970258 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
69970273 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
69970288 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
69970302 TTTCTT
1 TTTCTT
69970308 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69970297 original size:30 final size:30
Alignment explanation
Indices: 69970219--69970306 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
69970209 CATAGTATCG
* * *
69970219 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
69970249 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
69970279 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
69970307 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:69972737 original size:46 final size:46
Alignment explanation
Indices: 69972687--69972859 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
69972677 TTGGGCATCT
*
69972687 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
* * * *
69972733 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCGTCC
* * *
69972780 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
* *
69972826 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69972860 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.59
47 32 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
Found at i:69972839 original size:93 final size:93
Alignment explanation
Indices: 69972680--69972852 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
69972670 TGGATATTTG
* * * *
69972680 GGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69972745 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
69972773 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69972838 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
69972853 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69977713 original size:39 final size:39
Alignment explanation
Indices: 69977633--69977888 Score: 372
Period size: 39 Copynumber: 6.6 Consensus size: 39
69977623 AGGATTTTGA
* * * *
69977633 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
*
69977671 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
69977710 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
69977749 CCGGGCAAAGTCCTGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
69977788 TCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
69977827 TCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
69977866 CCGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
69977889 TGGGTTGGAA
Statistics
Matches: 198, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
38 20 0.10
39 175 0.88
40 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:69981356 original size:74 final size:74
Alignment explanation
Indices: 69981271--69981419 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
69981261 TCTGTTTCTT
69981271 TTCTATCTTCTTTTTTTCATTTCTTTTTCATTTGTTTTACTTTATATATATATAATATATTAACT
1 TTCTATCTTCTTTTTTTCATTTCTTTTTCATTTGTTTTACTTTATATATATATAATATATTAACT
69981336 TAATAAATA
66 TAATAAATA
*
69981345 TTCTATCTTCTTTTTTTCATTTCTTTTTCTTTTGTTTTACTTTATATATATATAATATATTAACT
1 TTCTATCTTCTTTTTTTCATTTCTTTTTCATTTGTTTTACTTTATATATATATAATATATTAACT
69981410 TAATAAATA
66 TAATAAATA
69981419 T
1 T
69981420 CTAATTAATA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.28, C:0.11, G:0.01, T:0.60
Consensus pattern (74 bp):
TTCTATCTTCTTTTTTTCATTTCTTTTTCATTTGTTTTACTTTATATATATATAATATATTAACT
TAATAAATA
Found at i:69997361 original size:13 final size:13
Alignment explanation
Indices: 69997334--69997410 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
69997324 AATACTTAAA
*
69997334 TTTTCCAAAGCAC
1 TTTTCAAAAGCAC
* *
69997347 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
69997360 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
69997373 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
69997386 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
69997399 TTTTCAAAAGCA
1 TTTTCAAAAGCA
69997411 ATGAAGAACT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:69997377 original size:39 final size:39
Alignment explanation
Indices: 69997334--69997408 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
69997324 AATACTTAAA
*
69997334 TTTTCCAAAGCACTTCTCAAAAGTACTTCTCAAAAGTAC
1 TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGTAC
* * *
69997373 TTTTCCACAGCACTTTTCAAAAGCACTTTTCAAAAG
1 TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAG
69997409 CAATGAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (39 bp):
TTTTCCAAAGCACTTCTCAAAAGCACTTCTCAAAAGTAC
Found at i:70011105 original size:27 final size:27
Alignment explanation
Indices: 70011064--70011117 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
70011054 ATTATGTCAT
*
70011064 TTGTTTCTCATAAAAATAGACTCAGTA
1 TTGTTTCTCACAAAAATAGACTCAGTA
*
70011091 TTGTTTTTCACAAAAATAGACTCAGTA
1 TTGTTTCTCACAAAAATAGACTCAGTA
70011118 AGGATTCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (27 bp):
TTGTTTCTCACAAAAATAGACTCAGTA
Found at i:70016916 original size:19 final size:19
Alignment explanation
Indices: 70016888--70016927 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
70016878 ATAGGATTTC
*
70016888 ATCACGAAATTTTCGCACA
1 ATCACAAAATTTTCGCACA
*
70016907 ATCACAAAATTTTTGCACA
1 ATCACAAAATTTTCGCACA
70016926 AT
1 AT
70016928 AATGAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (19 bp):
ATCACAAAATTTTCGCACA
Found at i:70016935 original size:19 final size:19
Alignment explanation
Indices: 70016891--70016935 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
70016881 GGATTTCATC
*
70016891 ACGAAATTTTCGCACAATC
1 ACGAAATTTTCGCACAATA
* *
70016910 ACAAAATTTTTGCACAATA
1 ACGAAATTTTCGCACAATA
*
70016929 ATGAAAT
1 ACGAAAT
70016936 CATATCATAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (19 bp):
ACGAAATTTTCGCACAATA
Found at i:70027986 original size:22 final size:22
Alignment explanation
Indices: 70027960--70028004 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
70027950 TATGCTAGAT
70027960 TATAATATATGCCTCCTAGACA
1 TATAATATATGCCTCCTAGACA
* *
70027982 TATAATATATTCCTTCTAGACA
1 TATAATATATGCCTCCTAGACA
70028004 T
1 T
70028005 GTTAATGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.38
Consensus pattern (22 bp):
TATAATATATGCCTCCTAGACA
Found at i:70030006 original size:16 final size:16
Alignment explanation
Indices: 70029985--70030027 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
70029975 GTAGATCGGC
70029985 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
70030001 AAAAGCC-AGAATGCTG
1 AAAAGCCGA-AATGCCG
*
70030017 AAATGCCGAAA
1 AAAAGCCGAAA
70030028 GTTTGGCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.47, C:0.21, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:70030326 original size:29 final size:29
Alignment explanation
Indices: 70030239--70030326 Score: 133
Period size: 29 Copynumber: 3.1 Consensus size: 29
70030229 GTGAGCATGA
*
70030239 ATAT-AATGTGATTTAGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
* *
70030267 ACACAAATGTGATTTGGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
*
70030296 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
70030325 AT
1 AT
70030327 GTGAAAATAG
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 2 0.04
29 51 0.96
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGGCC
Found at i:70031518 original size:18 final size:18
Alignment explanation
Indices: 70031451--70031511 Score: 122
Period size: 18 Copynumber: 3.4 Consensus size: 18
70031441 CTTGAGGAAG
70031451 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
70031469 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
70031487 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
70031505 GGTTTTC
1 GGTTTTC
70031512 CCTGAAACAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.31
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:70033486 original size:46 final size:47
Alignment explanation
Indices: 70033381--70033494 Score: 142
Period size: 48 Copynumber: 2.4 Consensus size: 47
70033371 TGTCTTCGAC
** * *
70033381 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* *
70033429 ATCGG-CTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 AT-GGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
70033475 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
70033495 TCTATCCTGT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
45 2 0.03
46 26 0.45
48 28 0.48
49 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:70049983 original size:32 final size:32
Alignment explanation
Indices: 70049947--70050010 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
70049937 TTAATTAAAA
70049947 GATGATAAAAAGAAAATATCATCTTATTTTGT
1 GATGATAAAAAGAAAATATCATCTTATTTTGT
70049979 GATGATAAAAAGAAAATATCATCTTATTTTGT
1 GATGATAAAAAGAAAATATCATCTTATTTTGT
70050011 CATCTTCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (32 bp):
GATGATAAAAAGAAAATATCATCTTATTTTGT
Found at i:70052465 original size:24 final size:24
Alignment explanation
Indices: 70052429--70052488 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
70052419 TTTTTTGAAA
*
70052429 GTTTCGACAATGCTCCGAAACCCT
1 GTTTCGACGATGCTCCGAAACCCT
*
70052453 GTTTCGACGATGCTCTGAAACCCT
1 GTTTCGACGATGCTCCGAAACCCT
70052477 GTTTCGACGATG
1 GTTTCGACGATG
70052489 GATATGGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (24 bp):
GTTTCGACGATGCTCCGAAACCCT
Found at i:70054318 original size:36 final size:36
Alignment explanation
Indices: 70054268--70054339 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
70054258 TAAACCATAG
70054268 AGTTAGTTTGCCTTTACTGCCAAACCGGTGAACTTT
1 AGTTAGTTTGCCTTTACTGCCAAACCGGTGAACTTT
* * *
70054304 AGTTAGTTTTCCTTTACTGCTAAACTGGTGAACTTT
1 AGTTAGTTTGCCTTTACTGCCAAACCGGTGAACTTT
70054340 CTTTCGTGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.40
Consensus pattern (36 bp):
AGTTAGTTTGCCTTTACTGCCAAACCGGTGAACTTT
Found at i:70064317 original size:20 final size:20
Alignment explanation
Indices: 70064292--70064336 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
70064282 AGGGACTAAA
*
70064292 ATGAAAAATTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
70064312 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
70064332 ATGAA
1 ATGAA
70064337 TACATGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:70070368 original size:18 final size:18
Alignment explanation
Indices: 70070304--70070382 Score: 70
Period size: 18 Copynumber: 4.3 Consensus size: 18
70070294 TTTATTTGTA
* *
70070304 CTTTTTTTTTGTCTTCTT
1 CTTTTTTTCTGTTTTCTT
* *
70070322 CTTTTTCTT-TATTATTATT
1 CTTTTT-TTCTGTT-TTCTT
70070341 CTTTTCTTTCTGTTTTCTT
1 CTTTT-TTTCTGTTTTCTT
* *
70070360 CTTTTTTTCTTTTTTTTT
1 CTTTTTTTCTGTTTTCTT
70070378 CTTTT
1 CTTTT
70070383 ATAACATTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
18 24 0.48
19 22 0.44
20 4 0.08
ACGTcount: A:0.04, C:0.15, G:0.03, T:0.78
Consensus pattern (18 bp):
CTTTTTTTCTGTTTTCTT
Found at i:70070381 original size:10 final size:10
Alignment explanation
Indices: 70070342--70070382 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
70070332 ATTATTATTC
*
70070342 TTTTCTTTCTG
1 TTTTCTTT-TT
70070353 TTTTCTTCTTT
1 TTTTCTT-TTT
70070364 TTTTCTTTTT
1 TTTTCTTTTT
70070374 TTTTCTTTT
1 TTTTCTTTT
70070383 ATAACATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 12 0.43
11 15 0.54
12 1 0.04
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:70073332 original size:22 final size:22
Alignment explanation
Indices: 70073307--70073353 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
70073297 CAGTAAGTCA
* *
70073307 ACAGGATG-GCTCAACGCTGTAG
1 ACAGGA-GCGCTCAACACCGTAG
70073329 ACAGGAGCGCTCAACACCGTAG
1 ACAGGAGCGCTCAACACCGTAG
70073351 ACA
1 ACA
70073354 TTGCAGCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.32, C:0.28, G:0.28, T:0.13
Consensus pattern (22 bp):
ACAGGAGCGCTCAACACCGTAG
Found at i:70074330 original size:54 final size:54
Alignment explanation
Indices: 70074258--70074365 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
70074248 AATCACTTTT
*
70074258 TCCCTCACCAACTCATCTGGTTCACTCTATTTAAAGCCAGCTTCTCACTAATTC
1 TCCCTCACCAACTCATCTGGTTCACTCTATTTAAAGCCAGCTTCTCACCAATTC
70074312 TCCCTCACCAACTCATCTGGTTCACTCTATTTAAAGCCAGCTTCTCACCAATTC
1 TCCCTCACCAACTCATCTGGTTCACTCTATTTAAAGCCAGCTTCTCACCAATTC
70074366 CCATGTTAGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.24, C:0.36, G:0.07, T:0.32
Consensus pattern (54 bp):
TCCCTCACCAACTCATCTGGTTCACTCTATTTAAAGCCAGCTTCTCACCAATTC
Found at i:70078156 original size:23 final size:23
Alignment explanation
Indices: 70078130--70078176 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
70078120 TTCAACTATA
70078130 ATGAAACACTTTTACAAAACTTC
1 ATGAAACACTTTTACAAAACTTC
70078153 ATGAAACACTTTTACAAAACTTC
1 ATGAAACACTTTTACAAAACTTC
70078176 A
1 A
70078177 CAAAATCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (23 bp):
ATGAAACACTTTTACAAAACTTC
Found at i:70080686 original size:48 final size:48
Alignment explanation
Indices: 70080515--70080687 Score: 208
Period size: 48 Copynumber: 3.6 Consensus size: 48
70080505 TCTCATATCG
* ** *
70080515 ATGCCATGTCCCAGAC-ATGGTCTTACACGAAATTACATATCGATGCCA
1 ATGCCATGTCCCAG-CTATGGTCTTACATGGGATCACATATCGATGCCA
* * *
70080563 ACGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGCTATGGTCTTACATGGGATCACATATCGATGCCA
* *
70080611 ATGCCATGTCCCAGAC-ATGGTGTTACATGGGATCATATA-CTGATGCCA
1 ATGCCATGTCCCAG-CTATGGTCTTACATGGGATCACATATC-GATGCCA
*
70080659 ATGCCATGTCTCAGCTATGGTCTTACATG
1 ATGCCATGTCCCAGCTATGGTCTTACATG
70080688 TCATTACGAT
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.02
48 105 0.98
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGCTATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:70096418 original size:143 final size:143
Alignment explanation
Indices: 70096159--70096435 Score: 527
Period size: 143 Copynumber: 1.9 Consensus size: 143
70096149 GATTTGGGTA
70096159 GAAATCTTAAGGGAGTTGTAAGATTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
1 GAAATCTTAAGGGAGTTGTAAGATTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
*
70096224 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGGGGCCCAACCACTCTAAAT
66 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
70096289 TCTTGTGTATGGT
131 TCTTGTGTATGGT
* *
70096302 GAAATCTTAAGGGAGTTGTAAGGTTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTGG
1 GAAATCTTAAGGGAGTTGTAAGATTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
70096367 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
66 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
70096432 TCTT
131 TCTT
70096436 ATGTTCAATT
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
143 131 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (143 bp):
GAAATCTTAAGGGAGTTGTAAGATTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
TCTTGTGTATGGT
Found at i:70096940 original size:24 final size:23
Alignment explanation
Indices: 70096913--70096966 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
70096903 ATTTTGCATC
70096913 ATATTACTAA-ATTCACATTTAAAA
1 ATATTA-TAATATTCA-ATTTAAAA
*
70096937 ATATTTATAATATTTAATTTAAAA
1 ATA-TTATAATATTCAATTTAAAA
*
70096961 GTATTA
1 ATATTA
70096967 GTTTAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 3 0.12
24 16 0.62
25 7 0.27
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (23 bp):
ATATTATAATATTCAATTTAAAA
Found at i:70097145 original size:7 final size:7
Alignment explanation
Indices: 70097127--70097161 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
70097117 GTTGTGATGA
70097127 TTATAA-
1 TTATAAT
70097133 TTATAAT
1 TTATAAT
70097140 TTATAAT
1 TTATAAT
70097147 TTATAAT
1 TTATAAT
70097154 TTATAAT
1 TTATAAT
70097161 T
1 T
70097162 ATTAGTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTATAAT
Found at i:70097431 original size:30 final size:30
Alignment explanation
Indices: 70097395--70097457 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
70097385 AAAAATTTTC
70097395 TATTATAATATCTAAATTGATAAGTTAATA
1 TATTATAATATCTAAATTGATAAGTTAATA
70097425 TATTATAATATCTAAATTGATAAGTTAATA
1 TATTATAATATCTAAATTGATAAGTTAATA
70097455 TAT
1 TAT
70097458 CTTAATTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (30 bp):
TATTATAATATCTAAATTGATAAGTTAATA
Found at i:70106485 original size:49 final size:48
Alignment explanation
Indices: 70106374--70106683 Score: 232
Period size: 49 Copynumber: 6.5 Consensus size: 48
70106364 AATGCCGATC
* * * * *
70106374 CCATGTTCCAAACAAGGTCTTACACTGGC-TCATATATCTAAG-TCGATG
1 CCATGTCCCAGAC-AGGTCTTACACTGACTTCATGTATCGAAGCT-GATG
* *
70106422 GCATGTCCTAGACAGGTCTTACACTGACTTTCATGTATCGAAGCTGATG
1 CCATGTCCCAGACAGGTCTTACACTGAC-TTCATGTATCGAAGCTGATG
* * * *
70106471 CCATGTCCGAGACAGGTCTTACACTGGCTCTCATCTATCGATG-TCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACT-TCATGTATCGAAGCT-GATG
* *
70106520 CCATGTCCCAGACAGGTCTTACACTGAC-ACATG--TC-AAGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTTCATGTATCGAAGCTGATG
* * * * * *
70106564 CCATGTCCCAGATAGATCTTACACT-AGCTTGCATATCTCGAGGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGA-CTT-CATGTATCGAAGCTGATG
* * * *
70106613 -CATGTCCCAGACATGTCTTAAACTGGC-TC-TCGTCTC-AATGCTGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTTCAT-GTATCGAA-GCTGATG
*
70106659 -CATGTCCCAGACATGTCTTACACTG
1 CCATGTCCCAGACAGGTCTTACACTG
70106684 GCTCTCATAA
Statistics
Matches: 215, Mismatches: 32, Indels: 32
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 4 0.02
46 38 0.18
47 18 0.08
48 34 0.16
49 89 0.41
50 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CCATGTCCCAGACAGGTCTTACACTGACTTCATGTATCGAAGCTGATG
Found at i:70106525 original size:98 final size:94
Alignment explanation
Indices: 70106374--70106724 Score: 335
Period size: 92 Copynumber: 3.7 Consensus size: 94
70106364 AATGCCGATC
* * * *
70106374 CCATGTTCCAAACAAGGTCTTACACTGG--CTCATATATCTAAGTCGATGGCATGTCCTAGACAG
1 CCATGTCCCAGAC-AGGTCTTACACTGGCTCTCATATATCGAAGTCGAT-GCATGTCCCAGACAG
70106437 GTCTTACACTGACTTTCATGTATCGAAGCTGATG
64 GTCTTACACTGAC-TTCATGT-TC-AAGCTGATG
* * *
70106471 CCATGTCCGAGACAGGTCTTACACTGGCTCTCATCTATCGATGTCGATGCCATGTCCCAGACAGG
1 CCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAAGTCGATG-CATGTCCCAGACAGG
* *
70106536 TCTTACACTGAC-ACATG-TCAAGCCGATG
65 TCTTACACTGACTTCATGTTCAAGCTGATG
* * * * * * *
70106564 CCATGTCCCAGATAGATCTTACACTAGCT-TGCATATCTCGAGGCCGATGCATGTCCCAGACATG
1 CCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATATCGAAGTCGATGCATGTCCCAGACAGG
* *
70106628 TCTTAAACTGGC-TC-TCGTCTCAATGCTGATG
65 TCTTACACTGACTTCAT-GT-TCAA-GCTGATG
* ** * *
70106659 -CATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATGCATGTCCCAGACATGT
1 CCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAAGTCGATGCATGTCCCAGACAGGT
70106721 CTTA
66 CTTA
70106725 TACTAGCACA
Statistics
Matches: 217, Mismatches: 28, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
91 1 0.00
92 56 0.26
93 48 0.22
94 34 0.16
95 7 0.03
96 18 0.08
97 11 0.05
98 42 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (94 bp):
CCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAAGTCGATGCATGTCCCAGACAGGT
CTTACACTGACTTCATGTTCAAGCTGATG
Found at i:70106670 original size:46 final size:45
Alignment explanation
Indices: 70106605--70106724 Score: 163
Period size: 46 Copynumber: 2.6 Consensus size: 45
70106595 CATATCTCGA
*
70106605 GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCGTCTCAA-T
1 GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTC--AT-AAGT
* *
70106652 -GCTGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCATAA-GT
70106697 GGCCGATGCATGTCCCAGACATGTCTTA
1 GGCCGATGCATGTCCCAGACATGTCTTA
70106725 TACTAGCACA
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 1 0.02
46 62 0.94
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCATAAGT
Found at i:70122171 original size:93 final size:93
Alignment explanation
Indices: 70122042--70122213 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70122032 CGCCCATAAG
* * *
70122042 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTAAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCA
70122107 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
70122135 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCA
70122200 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70122214 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70122210 original size:46 final size:46
Alignment explanation
Indices: 70122035--70122210 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
70122025 TGTAACCCGC
* * *
70122035 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
** *
70122081 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
70122131 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70122174 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70122211 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70123721 original size:23 final size:23
Alignment explanation
Indices: 70123686--70123730 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
70123676 AAAAGTAATT
*
70123686 AAATAAATATATTACAATTGTAC
1 AAATAAATATATTACAAATGTAC
70123709 AAATATAAT-TATTACAAATGTA
1 AAATA-AATATATTACAAATGTA
70123731 TATTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATAAATATATTACAAATGTAC
Found at i:70123862 original size:18 final size:20
Alignment explanation
Indices: 70123821--70123871 Score: 72
Period size: 18 Copynumber: 2.7 Consensus size: 20
70123811 TAATATAAAA
*
70123821 AATAATAATTA-ATAATTAT
1 AATAATAAATATATAATTAT
70123840 AATAATAAATATAT-ATT-T
1 AATAATAAATATATAATTAT
70123858 AATAATAAATATAT
1 AATAATAAATATAT
70123872 GTATTACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 15 0.50
19 13 0.43
20 2 0.07
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAATAAATATATAATTAT
Found at i:70123865 original size:3 final size:3
Alignment explanation
Indices: 70123773--70123847 Score: 63
Period size: 3 Copynumber: 26.3 Consensus size: 3
70123763 AATATATTTC
* *
70123773 ATA ATA AT- ATA AT- ATCA ATT A-A ATA ATA ATA ATA ACA ATA AT-
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
70123815 ATA A-A A-A ATA ATA ATTA ATA ATT ATA ATA ATA A
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA A
70123848 ATATATATTT
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
2 11 0.19
3 43 0.73
4 5 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:70125555 original size:68 final size:67
Alignment explanation
Indices: 70125483--70125632 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70125473 CATCATGTGT
* * * *
70125483 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70125545 ATGTAG
62 ATGTAG
** * *
70125551 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70125616 AG
66 AG
70125618 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70125633 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70125588 original size:64 final size:64
Alignment explanation
Indices: 70125507--70125678 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
70125497 AGACATTATG
* *
70125507 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70125571 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70125636 AA
63 AA
* * * *
70125638 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
70125679 GTGCAAGAGA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
63 9 0.10
64 21 0.24
65 8 0.09
66 16 0.18
67 31 0.36
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70126214 original size:28 final size:28
Alignment explanation
Indices: 70126151--70126206 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
70126141 AAACATAAAA
70126151 AGCAAAGGAGTTCTATATTTTGAGATAT
1 AGCAAAGGAGTTCTATATTTTGAGATAT
70126179 AGCAAAGGAGTTCTATATTTTGAGATAT
1 AGCAAAGGAGTTCTATATTTTGAGATAT
70126207 TTATAAGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (28 bp):
AGCAAAGGAGTTCTATATTTTGAGATAT
Found at i:70126502 original size:352 final size:352
Alignment explanation
Indices: 70125858--70127234 Score: 2709
Period size: 352 Copynumber: 3.9 Consensus size: 352
70125848 CAGGATGTGG
70125858 TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
1 TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
*
70125923 ATACTTTTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
66 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
70125988 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
131 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
70126053 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
196 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
70126118 ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
261 ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
70126183 AAGGAGTTCTATATTTTGAGATATTTA
326 AAGGAGTTCTATATTTTGAGATATTTA
*
70126210 TAAGGTTCTAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
1 TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
70126275 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
66 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
70126340 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
131 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
70126405 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
196 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
70126470 ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
261 ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
70126535 AAGGAGTTCTATATTTTGAGATATTTA
326 AAGGAGTTCTATATTTTGAGATATTTA
*
70126562 TAAGGTTCTAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
1 TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
70126627 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
66 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
70126692 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
131 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
70126757 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
196 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
*
70126822 ATGAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
261 ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
70126887 AAGGAGTTCTATATTTTGAGATATTTA
326 AAGGAGTTCTATATTTTGAGATATTTA
70126914 TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
1 TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
70126979 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
66 ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
70127044 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
131 CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
70127109 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
196 TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
*
70127174 ATGAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATAT
261 ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATAT
70127235 TTATGTTTTT
Statistics
Matches: 1021, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
352 1021 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (352 bp):
TAAGGTTATAAACAAGTAAGTTATACATGAGGATGATTTTATGGTGACCTTGTGATCATGGGCCT
ATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTAAAATGAGGTTAATA
CAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGAGAGTAGCAGTGACGTGATTT
TGAAAAATCACCAAAAATAGTATAAATTGAATCAGAGACTAAATGAGATATCATATTAAATCTTA
ATAAGTCTATTTTCATATAAGAGAAACATAAAAAGCAAAGGAGTTCTATATTTTGAGATATAGCA
AAGGAGTTCTATATTTTGAGATATTTA
Found at i:70126566 original size:28 final size:28
Alignment explanation
Indices: 70126503--70126558 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
70126493 AAACATAAAA
70126503 AGCAAAGGAGTTCTATATTTTGAGATAT
1 AGCAAAGGAGTTCTATATTTTGAGATAT
70126531 AGCAAAGGAGTTCTATATTTTGAGATAT
1 AGCAAAGGAGTTCTATATTTTGAGATAT
70126559 TTATAAGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (28 bp):
AGCAAAGGAGTTCTATATTTTGAGATAT
Found at i:70126918 original size:28 final size:28
Alignment explanation
Indices: 70126855--70126910 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
70126845 AAACATAAAA
70126855 AGCAAAGGAGTTCTATATTTTGAGATAT
1 AGCAAAGGAGTTCTATATTTTGAGATAT
70126883 AGCAAAGGAGTTCTATATTTTGAGATAT
1 AGCAAAGGAGTTCTATATTTTGAGATAT
70126911 TTATAAGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (28 bp):
AGCAAAGGAGTTCTATATTTTGAGATAT
Found at i:70131496 original size:16 final size:15
Alignment explanation
Indices: 70131475--70131508 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
70131465 AGCTATCACA
70131475 TGAATTAAATTAATAT
1 TGAATTAAATTAAT-T
*
70131491 TGAATTAATTTAATT
1 TGAATTAAATTAATT
70131506 TGA
1 TGA
70131509 CAATTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (15 bp):
TGAATTAAATTAATT
Found at i:70131643 original size:13 final size:13
Alignment explanation
Indices: 70131625--70131650 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70131615 TAGTTTACCA
70131625 AAATTATTATAAT
1 AAATTATTATAAT
70131638 AAATTATTATAAT
1 AAATTATTATAAT
70131651 TATTATTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:70142009 original size:17 final size:17
Alignment explanation
Indices: 70141987--70142030 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
70141977 GCTTACTTTA
70141987 GTAAAAGGTACGAAATC
1 GTAAAAGGTACGAAATC
70142004 GTAAAAGGTACGAAATC
1 GTAAAAGGTACGAAATC
70142021 GTAAAAGGTA
1 GTAAAAGGTA
70142031 AAAAAGTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.48, C:0.09, G:0.25, T:0.18
Consensus pattern (17 bp):
GTAAAAGGTACGAAATC
Found at i:70148325 original size:27 final size:27
Alignment explanation
Indices: 70148294--70148471 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70148284 TAAATTGTAC
70148294 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70148321 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70148347 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70148375 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70148403 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70148430 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70148457 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70148472 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70148408 original size:82 final size:81
Alignment explanation
Indices: 70148295--70148450 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70148285 AAATTGTACA
* *
70148295 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70148359 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70148376 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70148441 TGCGAGTTGA
65 TGCGAATTGA
70148451 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70148462 original size:82 final size:81
Alignment explanation
Indices: 70148291--70148471 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70148281 GATTAAATTG
* *
70148291 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70148356 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70148372 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70148436 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70148454 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70148472 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70152242 original size:27 final size:27
Alignment explanation
Indices: 70152212--70152389 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70152202 ATATTGAGTC
* * * *
70152212 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70152239 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70152266 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70152294 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70152321 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70152348 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70152375 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70152390 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70152351 original size:82 final size:81
Alignment explanation
Indices: 70152233--70152388 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70152223 TGCTATATAA
* *
70152233 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70152298 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70152315 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70152379 CACTTAGTGC
65 CACTTAGTGC
70152389 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70152888 original size:12 final size:12
Alignment explanation
Indices: 70152871--70152897 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70152861 ATGGCATACT
70152871 TATGTATATATA
1 TATGTATATATA
70152883 TATGTATATATA
1 TATGTATATATA
70152895 TAT
1 TAT
70152898 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:70155455 original size:27 final size:27
Alignment explanation
Indices: 70155424--70155601 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70155414 TAAATTGTAC
70155424 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70155451 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70155477 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70155505 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70155533 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70155560 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70155587 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70155602 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70155538 original size:82 final size:81
Alignment explanation
Indices: 70155425--70155580 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70155415 AAATTGTACA
* *
70155425 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70155489 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70155506 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70155571 TGCGAGTTGA
65 TGCGAATTGA
70155581 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70155592 original size:82 final size:81
Alignment explanation
Indices: 70155421--70155601 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70155411 GATTAAATTG
* *
70155421 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70155486 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70155502 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70155566 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70155584 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70155602 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70163596 original size:27 final size:27
Alignment explanation
Indices: 70163565--70163742 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70163555 TAAATTGTAC
70163565 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70163592 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70163618 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70163646 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70163674 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70163701 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70163728 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70163743 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70163679 original size:82 final size:81
Alignment explanation
Indices: 70163566--70163721 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70163556 AAATTGTACA
* *
70163566 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70163630 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70163647 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70163712 TGCGAGTTGA
65 TGCGAATTGA
70163722 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70163733 original size:82 final size:81
Alignment explanation
Indices: 70163562--70163742 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70163552 GATTAAATTG
* *
70163562 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70163627 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70163643 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70163707 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70163725 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70163743 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70185134 original size:27 final size:27
Alignment explanation
Indices: 70185104--70185369 Score: 172
Period size: 27 Copynumber: 10.0 Consensus size: 27
70185094 GAACATGCTA
* *
70185104 GAAATGTAAGCCTTTGTAGAAATCTAT
1 GAAATGGAAGCCTTTGTGGAAATCTAT
* * **
70185131 GAAATGAAAGTCTTTGTGGCGTATC--T
1 GAAATGGAAGCCTTTGTGG-AAATCTAT
* *
70185157 GAAATGGAAGCCTTTATGGAAATATAT
1 GAAATGGAAGCCTTTGTGGAAATCTAT
*
70185184 GAAATGGAAGCCTTTGTGGCAATCTAT
1 GAAATGGAAGCCTTTGTGGAAATCTAT
* ** * *
70185211 GAAATGGAAACCTTTACAGCATATC--T
1 GAAATGGAAGCCTTT-GTGGAAATCTAT
** **
70185237 GAAATGGAAGTATTTGTGGCGTATC--T
1 GAAATGGAAGCCTTTGTGG-AAATCTAT
* *
70185263 GAAATGGAAGCCTTTGTGGCAATCTGT
1 GAAATGGAAGCCTTTGTGGAAATCTAT
* *
70185290 GAAATAGAAGCCTTTGTGGCATATCTA-
1 GAAATGGAAGCCTTTGTGG-AAATCTAT
** **
70185317 -AAATGGAAGAATTT-TGTCAATCTAT
1 GAAATGGAAGCCTTTGTGGAAATCTAT
* **
70185342 GAAATTGAAGCCTTTGTGGTGATCTAT
1 GAAATGGAAGCCTTTGTGGAAATCTAT
70185369 G
1 G
70185370 GAAAGGATTG
Statistics
Matches: 181, Mismatches: 47, Indels: 22
0.72 0.19 0.09
Matches are distributed among these distances:
24 5 0.03
25 8 0.04
26 74 0.41
27 83 0.46
28 11 0.06
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (27 bp):
GAAATGGAAGCCTTTGTGGAAATCTAT
Found at i:70185185 original size:53 final size:53
Alignment explanation
Indices: 70185104--70185325 Score: 207
Period size: 53 Copynumber: 4.2 Consensus size: 53
70185094 GAACATGCTA
* * * *
70185104 GAAATGTAAGCCTTTGTAGAAATCTATGAAATGAAAGTCTTTGTGGCGTATCT
1 GAAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATCT
* * *
70185157 GAAATGGAAGCCTTTATGGAAATATATGAAATGGAAGCCTTTGTGGC-AATCTAT
1 GAAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATC--T
* * * * * **
70185211 GAAATGGAAACCTTTACAG-CATATCTGAAATGGAAGTATTTGTGGCGTATCT
1 GAAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATCT
* * * * * *
70185263 GAAATGGAAGCCTTTGTGGCAATCTGTGAAAT-AGAAGCCTTTGTGGCATATCT
1 GAAATGGAAGCCTTTATAGAAATATATGAAATGA-AAGCCTTTGTGGCGTATCT
*
70185316 AAAATGGAAG
1 GAAATGGAAG
70185326 AATTTTGTCA
Statistics
Matches: 137, Mismatches: 27, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
52 19 0.14
53 98 0.72
54 20 0.15
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (53 bp):
GAAATGGAAGCCTTTATAGAAATATATGAAATGAAAGCCTTTGTGGCGTATCT
Found at i:70185293 original size:79 final size:78
Alignment explanation
Indices: 70185104--70185369 Score: 230
Period size: 79 Copynumber: 3.4 Consensus size: 78
70185094 GAACATGCTA
* * * * *** * * *
70185104 GAAATGTAAGCCTTTGTAGAAATCTATGAAAT-GAAAGTCTTTGTGGCGTATCTGAAATGGAAGC
1 GAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAA-CCTTTACAGCATATCTAAAATGGAAGA
* * *
70185168 CTTTATGGAAATATAT
65 ATTT-TGGCAAT-CAT
* * *
70185184 GAAATGGAAGCCTTTGTGGCAATCTATGAAATGGAAACCTTTACAGCATATCTGAAATGGAAGTA
1 GAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTTACAGCATATCTAAAATGGAAGAA
*
70185249 TTTGTGGCGTATC-T
66 TTT-TGGC-AATCAT
* * ***
70185263 GAAATGGAAGCCTTTGTGGCAATCTGTGAAATAGAAGCCTTTGTGGCATATCTAAAATGGAAGAA
1 GAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTTACAGCATATCTAAAATGGAAGAA
*
70185328 TTTTGTCAATCTAT
66 TTTTGGCAATC-AT
* **
70185342 GAAATTGAAGCCTTTGTGGTGATCTATG
1 GAAATGGAAGCCTTTGTGGCAATCTATG
70185370 GAAAGGATTG
Statistics
Matches: 154, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
77 3 0.02
78 3 0.02
79 86 0.56
80 56 0.36
81 6 0.04
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (78 bp):
GAAATGGAAGCCTTTGTGGCAATCTATGAAATAGAAACCTTTACAGCATATCTAAAATGGAAGAA
TTTTGGCAATCAT
Found at i:70192581 original size:27 final size:27
Alignment explanation
Indices: 70192551--70192619 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
70192541 TAAATTGTAC
* *
70192551 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTACAT
*
70192578 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTACAT
*
70192605 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70192620 GACTCGATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTACAT
Done.