Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 207 of 373
Found at i:70192630 original size:27 final size:27
Alignment explanation
Indices: 70192551--70192627 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
70192541 TAAATTGTAC
* * **
70192551 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGACTCGATTATAT
* *
70192578 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTCGATTATAT
*
70192605 AGCACTGAGTGTGCGGACTCGAT
1 AGCACTAAGTGTGC-GACTCGAT
70192628 ATACATTCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 37 0.86
28 6 0.14
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTCGATTATAT
Found at i:70200593 original size:27 final size:27
Alignment explanation
Indices: 70200562--70200739 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70200552 TAAATTGTAC
70200562 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70200589 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70200615 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70200643 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70200671 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70200698 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70200725 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70200740 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70200676 original size:82 final size:81
Alignment explanation
Indices: 70200563--70200718 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70200553 AAATTGTACA
* *
70200563 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70200627 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70200644 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70200709 TGCGAGTTGA
65 TGCGAATTGA
70200719 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70200730 original size:82 final size:81
Alignment explanation
Indices: 70200559--70200739 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70200549 GATTAAATTG
* *
70200559 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70200624 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70200640 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70200704 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70200722 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70200740 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70207752 original size:27 final size:27
Alignment explanation
Indices: 70207721--70207898 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70207711 TAAATTGTAC
70207721 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70207748 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70207774 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70207802 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70207830 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70207857 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70207884 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70207899 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70207835 original size:82 final size:81
Alignment explanation
Indices: 70207722--70207877 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70207712 AAATTGTACA
* *
70207722 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70207786 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70207803 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70207868 TGCGAGTTGA
65 TGCGAATTGA
70207878 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70207889 original size:82 final size:81
Alignment explanation
Indices: 70207718--70207898 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70207708 GATTAAATTG
* *
70207718 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70207783 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70207799 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70207863 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70207881 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70207899 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70210811 original size:32 final size:32
Alignment explanation
Indices: 70210770--70210835 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
70210760 CATCTGGGAA
70210770 AAGCGAATGTAGTTGCTGACGCCTTGAGCAGG
1 AAGCGAATGTAGTTGCTGACGCCTTGAGCAGG
70210802 AAGCGAATGTAGTTGCTGACGCCTTGAGCAGG
1 AAGCGAATGTAGTTGCTGACGCCTTGAGCAGG
70210834 AA
1 AA
70210836 ATCTCTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.21
Consensus pattern (32 bp):
AAGCGAATGTAGTTGCTGACGCCTTGAGCAGG
Found at i:70211807 original size:164 final size:164
Alignment explanation
Indices: 70211536--70211868 Score: 666
Period size: 164 Copynumber: 2.0 Consensus size: 164
70211526 TGGAAAAAGT
70211536 TACAAGAAGCTTTGGGCACAAAATTGAACTTTAATACCGCGTTTCATCCACAAATAGATGGTCAG
1 TACAAGAAGCTTTGGGCACAAAATTGAACTTTAATACCGCGTTTCATCCACAAATAGATGGTCAG
70211601 TCGGAAAGAGTAATCCAAGTACTCGAAGATATGCTTAGATGCTGTGTTTTAGAATTTGAAGGCAG
66 TCGGAAAGAGTAATCCAAGTACTCGAAGATATGCTTAGATGCTGTGTTTTAGAATTTGAAGGCAG
70211666 TTGGGAGAAATATCTACCTTTGGTTGAATTTGCC
131 TTGGGAGAAATATCTACCTTTGGTTGAATTTGCC
70211700 TACAAGAAGCTTTGGGCACAAAATTGAACTTTAATACCGCGTTTCATCCACAAATAGATGGTCAG
1 TACAAGAAGCTTTGGGCACAAAATTGAACTTTAATACCGCGTTTCATCCACAAATAGATGGTCAG
70211765 TCGGAAAGAGTAATCCAAGTACTCGAAGATATGCTTAGATGCTGTGTTTTAGAATTTGAAGGCAG
66 TCGGAAAGAGTAATCCAAGTACTCGAAGATATGCTTAGATGCTGTGTTTTAGAATTTGAAGGCAG
70211830 TTGGGAGAAATATCTACCTTTGGTTGAATTTGCC
131 TTGGGAGAAATATCTACCTTTGGTTGAATTTGCC
70211864 TACAA
1 TACAA
70211869 TAACAGTTTT
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
164 169 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (164 bp):
TACAAGAAGCTTTGGGCACAAAATTGAACTTTAATACCGCGTTTCATCCACAAATAGATGGTCAG
TCGGAAAGAGTAATCCAAGTACTCGAAGATATGCTTAGATGCTGTGTTTTAGAATTTGAAGGCAG
TTGGGAGAAATATCTACCTTTGGTTGAATTTGCC
Found at i:70217672 original size:29 final size:29
Alignment explanation
Indices: 70217640--70217826 Score: 189
Period size: 29 Copynumber: 6.4 Consensus size: 29
70217630 GATTATTGAT
70217640 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
*
70217669 TATGAAAAGGGATGGTGACGACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCAAC
* * * ** * *
70217698 TATGAAAAGGGATAGCT-TCAAATATCGAT
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
** *
70217727 TATGAAAAGGGATGGTGAAAACTATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
* *
70217756 TATGAAAAGGGATGGTGACGACCATCGAT
1 TATGAAAAGGGATGGTGACGACCATCAAC
* **
70217785 TAATGAAAAGGGATCGTTTCGACCATCGAA-
1 T-ATGAAAAGGGATGGTGACGACCATC-AAC
70217815 TATGAAAAGGGA
1 TATGAAAAGGGA
70217827 CGGCTCTGAT
Statistics
Matches: 131, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
28 2 0.02
29 103 0.79
30 25 0.19
31 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:70217702 original size:58 final size:58
Alignment explanation
Indices: 70217640--70217826 Score: 214
Period size: 58 Copynumber: 3.2 Consensus size: 58
70217630 GATTATTGAT
* *
70217640 TATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGACGACCATCAAA
* * * ** ** * *
70217698 TATGAAAAGGGATAGCT-TCAAATATCGATTATGAAAAGGGATGGTGAAAACTATCAAC
1 TATGAAAAGGGAT-GGTGACGACCATCGATTATGAAAAGGGATGGTGACGACCATCAAA
* ** *
70217756 TATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATCGTTTCGACCATCGAA
1 TATGAAAAGGGATGGTGACGACCATCGATT-ATGAAAAGGGATGGTGACGACCATCAAA
70217815 TATGAAAAGGGA
1 TATGAAAAGGGA
70217827 CGGCTCTGAT
Statistics
Matches: 102, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
57 2 0.02
58 66 0.65
59 34 0.33
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (58 bp):
TATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGACGACCATCAAA
Found at i:70217744 original size:87 final size:87
Alignment explanation
Indices: 70217609--70217826 Score: 301
Period size: 87 Copynumber: 2.5 Consensus size: 87
70217599 ACGATCATAG
* * * **
70217609 AATATGAGAAGGGATAGCTTCGATTATTGATTATGAAAAGGGATGGTGACGACCATCAACTATGA
1 AATATGAAAAGGGATAGCTTCGAATATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGA
70217674 AAAGGGATGGTGACGACCATCA
66 AAAGGGATGGTGACGACCATCA
* *
70217696 AATATGAAAAGGGATAGCTTCAAATATCGATTATGAAAAGGGATGGTGAAAACTATCAACTATGA
1 AATATGAAAAGGGATAGCTTCGAATATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGA
*
70217761 AAAGGGATGGTGACGACCATCG
66 AAAGGGATGGTGACGACCATCA
* * * ** *
70217783 ATTAATGAAAAGGGATCGTTTCGACCATCGAATATGAAAAGGGA
1 AAT-ATGAAAAGGGATAGCTTCGAATATCGATTATGAAAAGGGA
70217827 CGGCTCTGAT
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 81 0.70
88 34 0.30
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.22
Consensus pattern (87 bp):
AATATGAAAAGGGATAGCTTCGAATATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGA
AAAGGGATGGTGACGACCATCA
Found at i:70224398 original size:93 final size:93
Alignment explanation
Indices: 70224266--70224437 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
70224256 GCCCATAAGT
*
70224266 GAACTCAGAATCAACTCAACGAGCTCAGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGAATCAACTCAACGAGCTCAGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
70224331 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
70224359 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGAATCAACTCAACGAGCTCAGG-CATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
70224423 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
70224438 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGAATCAACTCAACGAGCTCAGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:70224433 original size:46 final size:44
Alignment explanation
Indices: 70224258--70224432 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 44
70224248 TGTAACCCGC
* * *
70224258 CCATAAGTGAACTCAGAATCAACTCAACGAGCTCAGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTC-CAT
*
70224304 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCC-A--T
* *** *
70224350 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTC-CAT
*
70224397 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
70224433 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.60
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCCAT
Found at i:70224452 original size:46 final size:44
Alignment explanation
Indices: 70224309--70224452 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
70224299 CACATCCATA
* *
70224309 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
70224358 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
70224401 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
70224448 AGTGA
1 AGTGA
70224453 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 28 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:70228210 original size:46 final size:46
Alignment explanation
Indices: 70228153--70228325 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
70228143 TGGTTGAGCA
*
70228153 TCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70228199 TTCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
70228244 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70228292 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70228326 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 2 0.02
46 54 0.53
47 25 0.25
48 2 0.02
50 3 0.03
51 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70228309 original size:93 final size:93
Alignment explanation
Indices: 70228150--70228319 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
70228140 GGATGGTTGA
* * **
70228150 GCATCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70228215 TGAGTCCGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTTGTGAAATGTAACTAG
* *
70228243 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
70228308 TGAGTCTGAGTT
66 TGAGTCCGAGTT
70228320 CACTTAGGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAAATGTAACTAG
Found at i:70230040 original size:30 final size:30
Alignment explanation
Indices: 70230006--70230064 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
70229996 TTTACGAGCC
*
70230006 TAGGGGCCAAAGTGAAAATATGTAAAAGTT
1 TAGGGGCCAAAATGAAAATATGTAAAAGTT
* *
70230036 TAGGGGTCAAAATGAAAATTTGTAAAAGT
1 TAGGGGCCAAAATGAAAATATGTAAAAGT
70230065 ATGATTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.44, C:0.05, G:0.25, T:0.25
Consensus pattern (30 bp):
TAGGGGCCAAAATGAAAATATGTAAAAGTT
Found at i:70230321 original size:18 final size:20
Alignment explanation
Indices: 70230285--70230331 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
70230275 AGTTGTAAGT
70230285 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
70230305 ATATA-ATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
70230324 ATGATATA
1 AT-ATATA
70230332 ACATGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 14 0.61
20 8 0.35
21 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:70230851 original size:50 final size:50
Alignment explanation
Indices: 70230685--70230912 Score: 172
Period size: 50 Copynumber: 4.5 Consensus size: 50
70230675 TGTGATTCAG
* * * * * *
70230685 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATGGATAAGTCAC
* * * *** * ** **
70230735 ATGTGTAGTACTAAGTGCAAGCAACTATGCGTACTCG-TTAACTTCGATCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATGGA-TAAG-TCAC
* * *
70230786 GTGTGTAGTAGTAAGTGCAGGCTACTACATGTA-TCAGATGGTTAAGTCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACT-AGATGGATAAGTCAC
* * * * *
70230836 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATGGATAAGTCAC
* *
70230886 ATGTGTAATACTAAGTGCAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
70230913 TGCGTACCAG
Statistics
Matches: 136, Mismatches: 37, Indels: 10
0.74 0.20 0.05
Matches are distributed among these distances:
49 3 0.02
50 99 0.73
51 33 0.24
52 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATGGATAAGTCAC
Found at i:70230870 original size:101 final size:101
Alignment explanation
Indices: 70230685--70230870 Score: 237
Period size: 101 Copynumber: 1.8 Consensus size: 101
70230675 TGTGATTCAG
* * * * *
70230685 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
*
70230750 TGCAAGCAACTATGCGTACTCGTTAACTTCGATCAC
66 TGCAAGCAACTACGCGTACTCGTTAACTTCGATCAC
* * * **
70230786 GTGTGTAGTAGTAAGTGCAGGCTACTACATGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
* * * *
70230851 TGTAGGCTACTACGTGTACT
66 TGCAAGCAACTACGCGTACT
70230871 AGATTGATAG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
TGCAAGCAACTACGCGTACTCGTTAACTTCGATCAC
Found at i:70231144 original size:16 final size:16
Alignment explanation
Indices: 70231123--70231154 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70231113 AGAATGGAGT
70231123 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
70231139 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
70231155 TAAAACAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:70231735 original size:180 final size:179
Alignment explanation
Indices: 70231478--70231814 Score: 496
Period size: 180 Copynumber: 1.9 Consensus size: 179
70231468 TCCAAGAGCT
* *
70231478 GTACCATAAGATAAATAATTTTTAGTGAGAGAGGTCGGAACTGTCAAAAAGTGAAATAGGGGTCT
1 GTACCATAAGATAAATAATTTTTAGTGAGAGAGGTCGGAACTATCAAAAAGTGAAATAGGGGTAT
* * * *
70231543 ATTTATTGAATAAACTGTACTTATTTGCTAAA-CTAAAAATTTTGAAAATTTTATGGTAAGAATA
66 ATTTAATGAATAAACTGTACTTATTTGCTAAATC-AAAAATTATAAAAATTTTATGGTAAGAAGA
* * * *
70231607 TATGTGAGTCTAGTTTCTGGAAAAATTAGCAGTTCTCAATTTGGATTCTC
130 TATATAAGTCTAGTTTCAGAAAAAATTAGCAGTTCTCAATTTGGATTCTC
* * * *
70231657 GTACCATGAGATTAATAATTTTTAGTGAAGAGAGGTCGGAACTATCAGACAGTGAAATAGGGGTA
1 GTACCATAAGATAAATAATTTTTAGTG-AGAGAGGTCGGAACTATCAAAAAGTGAAATAGGGGTA
* * *
70231722 TCTTTAATGAATAAACTGTACTTATTTTCTAGATCAAAAATTATAAAAATTTTATGGTAAGAAGA
65 TATTTAATGAATAAACTGTACTTATTTGCTAAATCAAAAATTATAAAAATTTTATGGTAAGAAGA
70231787 TATATAAGTCTAGTTTCAGAAAAAATTA
130 TATATAAGTCTAGTTTCAGAAAAAATTA
70231815 ACGGATCTTA
Statistics
Matches: 139, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
179 25 0.18
180 113 0.81
181 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (179 bp):
GTACCATAAGATAAATAATTTTTAGTGAGAGAGGTCGGAACTATCAAAAAGTGAAATAGGGGTAT
ATTTAATGAATAAACTGTACTTATTTGCTAAATCAAAAATTATAAAAATTTTATGGTAAGAAGAT
ATATAAGTCTAGTTTCAGAAAAAATTAGCAGTTCTCAATTTGGATTCTC
Found at i:70236229 original size:93 final size:93
Alignment explanation
Indices: 70236070--70236242 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
70236060 CAGATATTTG
* * **
70236070 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATGTGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAATCTCCCAACTCGTTGAG
*
70236135 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
* *
70236163 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CTCCCAAGCTTGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAATCTCCCAA-CTCGTTGA
70236227 GTTGAGTCCAAGTTCG
65 GTTGAGTCCAAGTTCG
70236243 CTTATGGGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAATCTCCCAACTCGTTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:70239247 original size:15 final size:15
Alignment explanation
Indices: 70239227--70239261 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
70239217 GTATCTTGGG
70239227 TTTCTTTATTCTAGA
1 TTTCTTTATTCTAGA
*
70239242 TTTCTTTATTCTAGG
1 TTTCTTTATTCTAGA
70239257 TTTCT
1 TTTCT
70239262 CAATCTTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.14, G:0.09, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTAGA
Found at i:70242176 original size:93 final size:93
Alignment explanation
Indices: 70242017--70242189 Score: 249
Period size: 93 Copynumber: 1.9 Consensus size: 93
70242007 CGGATATTTT
* * * **
70242017 GGCATCCAAACTCGTTGAGTTGAGTCTGAGTTTACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
70242082 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
70242110 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTTGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
* *
70242174 GTTGATTTCGAGTTCG
65 GTTGAGTCCGAGTTCG
70242190 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:70243491 original size:47 final size:47
Alignment explanation
Indices: 70243428--70243532 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
70243418 CCCTTCGGGA
* *
70243428 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
70243475 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
70243522 CTTATCACATA
1 CTTATCACATA
70243533 ATTAATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:70243642 original size:48 final size:46
Alignment explanation
Indices: 70243584--70243969 Score: 529
Period size: 48 Copynumber: 8.0 Consensus size: 46
70243574 ATATACACAC
* * *
70243584 ATCTCCTACATATTGGTCATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATT--TCATTAGCCATTCGGCTTTACCACATATACAT
*
70243632 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCA--TTAGCCATTCGGCTTTACCACATATACAT
70243680 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTC--ATTAGCCATTCGGCTTTACCACATATACAT
* * *
70243728 ATCTCATACATATTTCACAATAGTCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTT--CATTAGCCATTCGGCTTTACCACATATACAT
*
70243776 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCA--TTAGCCATTCGGCTTTACCACATATACAT
* *
70243824 ATCTCATACATATTTCATATTTGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTC--ATTAGCCATTCGGCTTTACCACATATACAT
70243872 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTC--ATTAGCCATTCGGCTTTACCACATATACAT
*
70243920 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTT--CATTAGCCATTCGGCTTTACCACATATACAT
70243968 AT
1 AT
70243970 TTATCTTGTA
Statistics
Matches: 310, Mismatches: 16, Indels: 24
0.89 0.05 0.07
Matches are distributed among these distances:
46 5 0.02
48 301 0.97
50 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (46 bp):
ATCTCATACATATTTCATTAGCCATTCGGCTTTACCACATATACAT
Found at i:70243707 original size:96 final size:96
Alignment explanation
Indices: 70243602--70243964 Score: 618
Period size: 96 Copynumber: 3.8 Consensus size: 96
70243592 CATATTGGTC
* * **
70243602 ATTAGCCATTCGGATTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
70243667 ACCACATATACGTATCTCATACATATTTCAT
66 ACCACATATACGTATCTCATACATATTTCAT
* *
70243698 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAATAGTCATTCGGCTTT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
**
70243763 ACCACATATATATATCTCATACATATTTCAT
66 ACCACATATACGTATCTCATACATATTTCAT
* * * *
70243794 GTTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATTTCATATTTGCCATTCGGCTTT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
70243859 ACCACATATACGTATCTCATACATATTTCAT
66 ACCACATATACGTATCTCATACATATTTCAT
70243890 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
70243955 ACCACATATA
66 ACCACATATA
70243965 TATATTTATC
Statistics
Matches: 247, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 247 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (96 bp):
ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
ACCACATATACGTATCTCATACATATTTCAT
Found at i:70243764 original size:144 final size:144
Alignment explanation
Indices: 70243604--70243964 Score: 641
Period size: 144 Copynumber: 2.5 Consensus size: 144
70243594 TATTGGTCAT
*
70243604 TAGCCATTCGGATTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTAC
70243669 CACATATACGTATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
66 CACATATACGTATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
70243734 TACATATTTCACAA
131 TACATATTTCACAA
*
70243748 TAGTCATTCGGCTTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTAC
* *
70243813 CACATATACGTATCTCATACATATTTCATATTTGCCATTCGGCTTTACCACATATACGTATCTCA
66 CACATATACGTATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70243878 TACATATTTCATAT
131 TACATATTTCACAA
* **
70243892 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTAC
70243957 CACATATA
66 CACATATA
70243965 TATATTTATC
Statistics
Matches: 207, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 207 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (144 bp):
TAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTAC
CACATATACGTATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
TACATATTTCACAA
Found at i:70258893 original size:14 final size:14
Alignment explanation
Indices: 70258874--70258901 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70258864 CGCTCTAAAT
70258874 TTCTCAGCCACATA
1 TTCTCAGCCACATA
70258888 TTCTCAGCCACATA
1 TTCTCAGCCACATA
70258902 CTTTCTAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.07, T:0.29
Consensus pattern (14 bp):
TTCTCAGCCACATA
Found at i:70262534 original size:3 final size:3
Alignment explanation
Indices: 70262526--70262556 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
70262516 AAAGATTCAA
70262526 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
70262557 TAACTTGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:70266276 original size:62 final size:62
Alignment explanation
Indices: 70266179--70266303 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
70266169 CGACCGAATC
*
70266179 TGAGTATTTTCTTCCACGGTAAGACTTTCAAGAAAAGTTTATTTCCAATTTGAAACTCTATA
1 TGAGTATTTTCTTCCACGGTAAGACTTTCAAGAAAACTTTATTTCCAATTTGAAACTCTATA
*
70266241 TGAGTATTTTCTTCCACGGTGAGACTTTCAAGAAAACTTTATTTCCAATTTGAAACTCTATA
1 TGAGTATTTTCTTCCACGGTAAGACTTTCAAGAAAACTTTATTTCCAATTTGAAACTCTATA
70266303 T
1 T
70266304 CTTTACGTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (62 bp):
TGAGTATTTTCTTCCACGGTAAGACTTTCAAGAAAACTTTATTTCCAATTTGAAACTCTATA
Found at i:70270775 original size:3 final size:3
Alignment explanation
Indices: 70270767--70270791 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70270757 AGAGATTCAA
70270767 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
70270792 TAACTTGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:70279210 original size:240 final size:240
Alignment explanation
Indices: 70278779--70279213 Score: 845
Period size: 240 Copynumber: 1.8 Consensus size: 240
70278769 ACTATTAACT
*
70278779 TGTCTTGCGTTGGCCTATGTAAAGGCTTAAATATTAAACTTATTCTTTTTGTATATGGTCATAAG
1 TGTCTTGCGTTGGCCTATGTAAAGGCTTAAATATTAAACTTATTCTTTTTGTATATGGCCATAAG
70278844 ACATGGCTCATTTTGATGTAGGCTATGACCTACTAATTGTGCTTGTTGTGGTTAAATGTTCTTAT
66 ACATGGCTCATTTTGATGTAGGCTATGACCTACTAATTGTGCTTGTTGTGGTTAAATGTTCTTAT
70278909 GATGATTAAATATGGTATATTATAAATAAACATATGAAATGTGGCCAAATCACTTGGGATGGTTA
131 GATGATTAAATATGGTATATTATAAATAAACATATGAAATGTGGCCAAATCACTTGGGATGGTTA
70278974 TTTTGTTTCAATGGCATGTATAGGTTTTGTTTATTTTGTGATATG
196 TTTTGTTTCAATGGCATGTATAGGTTTTGTTTATTTTGTGATATG
70279019 TGTCATTG-GTTGGCCTATGTAAAGGCTTAAATATTAAACTTATTCTTTTTGTATATGGCCATAA
1 TGTC-TTGCGTTGGCCTATGTAAAGGCTTAAATATTAAACTTATTCTTTTTGTATATGGCCATAA
70279083 GACATGGCTCATTTTGATGTAGGCTATGACCTACTAATTGTGCTTGTTGTGGTTAAATGTTCTTA
65 GACATGGCTCATTTTGATGTAGGCTATGACCTACTAATTGTGCTTGTTGTGGTTAAATGTTCTTA
70279148 TGATGATTAAATATGGTATATTATAAATAAACATATGAAATGTGGCCAAATCACTTGGGATGGTT
130 TGATGATTAAATATGGTATATTATAAATAAACATATGAAATGTGGCCAAATCACTTGGGATGGTT
70279213 A
195 A
70279214 GGTCATACTT
Statistics
Matches: 193, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
240 190 0.98
241 3 0.02
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (240 bp):
TGTCTTGCGTTGGCCTATGTAAAGGCTTAAATATTAAACTTATTCTTTTTGTATATGGCCATAAG
ACATGGCTCATTTTGATGTAGGCTATGACCTACTAATTGTGCTTGTTGTGGTTAAATGTTCTTAT
GATGATTAAATATGGTATATTATAAATAAACATATGAAATGTGGCCAAATCACTTGGGATGGTTA
TTTTGTTTCAATGGCATGTATAGGTTTTGTTTATTTTGTGATATG
Found at i:70280647 original size:30 final size:31
Alignment explanation
Indices: 70280588--70280651 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
70280578 ACTTAACAAG
70280588 CAAATGCTTCTAAAATAATAATAAAAATTAA
1 CAAATGCTTCTAAAATAATAATAAAAATTAA
*
70280619 CAAATGCCTT-TAAAATAATAA-GAAAATTAA
1 CAAATG-CTTCTAAAATAATAATAAAAATTAA
70280649 CAA
1 CAA
70280652 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 11 0.35
31 17 0.55
32 3 0.10
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.27
Consensus pattern (31 bp):
CAAATGCTTCTAAAATAATAATAAAAATTAA
Found at i:70285034 original size:40 final size:40
Alignment explanation
Indices: 70284953--70285163 Score: 225
Period size: 40 Copynumber: 5.3 Consensus size: 40
70284943 TCTCCGGAAT
** * * *
70284953 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* * * *
70284991 TTAGCTCGGATATGGTCACTAGCATAAATGCCCTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* *
70285031 TTAGCCCGGATATAGT-AGCTAGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAGTCA-CTAGCACAAATGCCTTCGGGAC
*
70285071 TTAGCCCGGATATAG-CAACTTGCACAAATGCCTTC-GGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGA-C
* * *
70285111 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
70285151 TTAGCCCGGATAT
1 TTAGCCCGGATAT
70285164 CATTCGAATA
Statistics
Matches: 142, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 4 0.03
39 17 0.12
40 116 0.82
41 5 0.04
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:70293331 original size:40 final size:40
Alignment explanation
Indices: 70293286--70293470 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
70293276 CTCGCACAAG
* * *
70293286 GCCTTCGGGTCTTATCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
70293326 GCCTTCGGGACTTAGCCCGGATATAGTTGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
70293366 GCCTTCGGGTCTTAGCCCGGGATATAG-CAACTTGCACAAAT
1 GCCTTCGGGTCTTAGCCC-GGATATAGTC-ACTAGCACAAAT
* * * *
70293407 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
70293447 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70293471 CATTCGAATA
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 89 0.72
41 35 0.28
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:70293421 original size:81 final size:80
Alignment explanation
Indices: 70293286--70293470 Score: 239
Period size: 81 Copynumber: 2.3 Consensus size: 80
70293276 CTCGCACAAG
* * *
70293286 GCCTTCGGGTCTTATCCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
** *
70293351 GTTGCTAGCACAAAT
66 GTCACTAGCACAAAA
* *
70293366 GCCTTCGGGTCTTAGCCCGGGATATAG-CAACTTGCACAAATGCCTTC-GGATCTTAGTCCGGAT
1 GCCTTCGGGTCTTAGCCC-GGATATAGTC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGAT
*
70293429 ATAGTCACTAGCATAAAA
63 ATAGTCACTAGCACAAAA
*
70293447 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70293471 CATTCGAATA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
80 27 0.29
81 65 0.71
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCACTAGCACAAAA
Found at i:70298762 original size:24 final size:24
Alignment explanation
Indices: 70298735--70298787 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
70298725 CTTTCCGAAG
* *
70298735 CTTCTCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGATTCTTTGTGAA
70298759 CTTCCCGATATGATTCTTTGTGAA
1 CTTCCCGATATGATTCTTTGTGAA
70298783 CTTCC
1 CTTCC
70298788 TGATTATGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (24 bp):
CTTCCCGATATGATTCTTTGTGAA
Found at i:70300246 original size:258 final size:258
Alignment explanation
Indices: 70299789--70300303 Score: 895
Period size: 258 Copynumber: 2.0 Consensus size: 258
70299779 ATAAGGTTAG
*
70299789 GAAATGGCCTTATTTTTTCCACATAGGTAGACAGACGGACGTGTGTCTTGACCGTGTGTGACACA
1 GAAATGGCCTTATTTTTTCCACATAGATAGACAGACGGACGTGTGTCTTGACCGTGTGTGACACA
*
70299854 CGGCCTGACACATGGGCATGTGGTTTGGCCATGTGTCCCCTGCCTCCTAAAATTGAGAAACAGAA
66 CAGCCTGACACATGGGCATGTGGTTTGGCCATGTGTCCCCTGCCTCCTAAAATTGAGAAACAGAA
* * * * *
70299919 TGCTCAAAATTGGGCACATGAGCGGAGACATGGGCGTGTATCTTAGCCGTGGAAGATATACGGCT
131 TGCTCAAAATTAGGCACATGAGCGGAGACATGGGCATGTACCTCAGCCGTGAAAGATATACGGCT
* *
70299984 TAGAACACTAGTGTGTGTCTAGGCCATGTGAGACCTGCACCTAATTTGTGAAAATTAGTTTGT
196 TAGAACACTAGTGTGTGTCTAGCCCATGTGAGACCTGCACCTAATTTGTGAAAATTAATTTGT
*
70300047 GAAATGGCCTTATTTTTTCTACATAGATAGACAGACGGACGTGTGTCTTGACCGTGTGTGACACA
1 GAAATGGCCTTATTTTTTCCACATAGATAGACAGACGGACGTGTGTCTTGACCGTGTGTGACACA
* *
70300112 CAGCCTGACACATGGGCATGTGGTTTGGCCGTGTGTCCCTTGCCTCCTAAAATTGAGAAACAGAA
66 CAGCCTGACACATGGGCATGTGGTTTGGCCATGTGTCCCCTGCCTCCTAAAATTGAGAAACAGAA
*
70300177 TGCTCAAAATTAGGCACATGAGCGGAGACATGGGCATGTGCCTCAGCCGTGAAAGATATACGGCT
131 TGCTCAAAATTAGGCACATGAGCGGAGACATGGGCATGTACCTCAGCCGTGAAAGATATACGGCT
* *
70300242 TAGAACACTAGTGTGTGTCTTGCCCATGTGAGACCTGTACCTAATTTGTGAAAATTAATTTG
196 TAGAACACTAGTGTGTGTCTAGCCCATGTGAGACCTGCACCTAATTTGTGAAAATTAATTTG
70300304 ACCACACGGC
Statistics
Matches: 242, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
258 242 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (258 bp):
GAAATGGCCTTATTTTTTCCACATAGATAGACAGACGGACGTGTGTCTTGACCGTGTGTGACACA
CAGCCTGACACATGGGCATGTGGTTTGGCCATGTGTCCCCTGCCTCCTAAAATTGAGAAACAGAA
TGCTCAAAATTAGGCACATGAGCGGAGACATGGGCATGTACCTCAGCCGTGAAAGATATACGGCT
TAGAACACTAGTGTGTGTCTAGCCCATGTGAGACCTGCACCTAATTTGTGAAAATTAATTTGT
Found at i:70305538 original size:40 final size:40
Alignment explanation
Indices: 70305475--70305655 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
70305465 ATTCGGATTG
*
70305475 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
* *
70305514 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
* * * *
70305554 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
70305594 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CT
* **
70305634 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
70305656 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 29 0.23
40 95 0.77
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
Found at i:70307652 original size:3 final size:3
Alignment explanation
Indices: 70307633--70307723 Score: 68
Period size: 3 Copynumber: 30.3 Consensus size: 3
70307623 GAGCTTTGTT
* *
70307633 TTA TT- TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
70307676 TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA
1 TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA
70307720 TTA T
1 TTA T
70307724 ATATGCCCTC
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
2 9 0.12
3 54 0.75
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:70307676 original size:27 final size:27
Alignment explanation
Indices: 70307637--70307723 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
70307627 TTTGTTTTAT
70307637 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
70307664 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
70307689 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
70307715 -TTATATTAT
1 TTTATATTAT
70307724 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:70307698 original size:21 final size:18
Alignment explanation
Indices: 70307633--70307727 Score: 95
Period size: 18 Copynumber: 5.1 Consensus size: 18
70307623 GAGCTTTGTT
70307633 TTATT-TTATTATTTTATTA
1 TTATTATTATTA-TTTA-TA
* *
70307652 TTTTTACTATTATTTATA
1 TTATTATTATTATTTATA
*
70307670 TTATTATTATTATTTCTCA
1 TTATTATTATTATTTAT-A
70307689 TGTATATATTATTATTTATA
1 T-TAT-TATTATTATTTATA
70307709 TTATTATTA-TATTATATA
1 TTATTATTATTATT-TATA
70307727 T
1 T
70307728 GCCCTCTCCA
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
17 4 0.06
18 26 0.40
19 13 0.20
20 10 0.15
21 12 0.18
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTATTATTATTTATA
Found at i:70307953 original size:12 final size:11
Alignment explanation
Indices: 70307932--70307991 Score: 50
Period size: 12 Copynumber: 5.2 Consensus size: 11
70307922 CTATTACTAT
70307932 TATTAT-TATA
1 TATTATGTATA
70307942 TATTAGTGTATA
1 TATTA-TGTATA
*
70307954 TTTTTATGTATA
1 -TATTATGTATA
*
70307966 TATATATTTATA
1 TAT-TATGTATA
*
70307978 TATATATTTATA
1 TAT-TATGTATA
70307990 TA
1 TA
70307992 CAGTATTGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
10 5 0.12
11 3 0.07
12 31 0.72
13 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (11 bp):
TATTATGTATA
Found at i:70307975 original size:16 final size:16
Alignment explanation
Indices: 70307950--70307984 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
70307940 TATATTAGTG
* *
70307950 TATATTTTTATGTATA
1 TATATATTTATATATA
70307966 TATATATTTATATATA
1 TATATATTTATATATA
70307982 TAT
1 TAT
70307985 TTATATACAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TATATATTTATATATA
Found at i:70308151 original size:121 final size:125
Alignment explanation
Indices: 70307929--70308153 Score: 282
Period size: 121 Copynumber: 1.8 Consensus size: 125
70307919 TTGCTATTAC
* * *
70307929 TATTATTATTATATATTAGTGTATATTTTTATGTATATATATATTTATATATATATTTATATACA
1 TATTATTATTATATAGTAGTGTATATTTCTA-GTATATATACA-TTATATATATATTTATATACA
* * *
70307994 GTATTGTTTTTTATTACTTTAATTTAATATTTTTATTATATTTGCTTTTTGTATTTCTATATT
64 GTATTATTATTTATTACTTTAA-TTAATATTCTTATTATATTTGCTTTTTGTATTTCTATATT
* *
70308057 TATTATTATTATATAGTAGTGTGTATTTCTA-T-TATATACA-TATATAT-T-TTTATATATAGT
1 TATTATTATTATATAGTAGTGTATATTTCTAGTATATATACATTATATATATATTTATATACAGT
*
70308117 ATTATTATTTACTTTACTTTAA-TATTATTCTTATTAT
66 ATTATTATTTA--TTACTTTAATTAATATTCTTATTAT
70308154 CATTATATCC
Statistics
Matches: 86, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
121 33 0.38
122 1 0.01
123 16 0.19
125 7 0.08
126 1 0.01
128 28 0.33
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (125 bp):
TATTATTATTATATAGTAGTGTATATTTCTAGTATATATACATTATATATATATTTATATACAGT
ATTATTATTTATTACTTTAATTAATATTCTTATTATATTTGCTTTTTGTATTTCTATATT
Found at i:70315645 original size:40 final size:40
Alignment explanation
Indices: 70315545--70315809 Score: 265
Period size: 40 Copynumber: 6.7 Consensus size: 40
70315535 GCTCCTCGTT
* * * * *
70315545 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* ** *
70315585 C-AATGCCTTCGGGACATAACCCGGATTTAAAAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
70315624 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
70315664 CAAAGGCCTTCAGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTC-GGGACTTAACCCGG-ATTTAGTATCTCGCA
*
70315704 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
70315744 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
70315785 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
70315810 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 19, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
39 42 0.21
40 136 0.69
41 19 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:70315818 original size:41 final size:41
Alignment explanation
Indices: 70315741--70315818 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70315731 TTTGTATCTC
* * *
70315741 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70315782 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70315819 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:70318477 original size:21 final size:21
Alignment explanation
Indices: 70318438--70318477 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70318428 TGTGCAAGTC
**
70318438 TTGAGAAAATTATTTTTGAGG
1 TTGAGAAAATTATAGTTGAGG
*
70318459 TTGAGAAAATTCTAGTTGA
1 TTGAGAAAATTATAGTTGA
70318478 AACTCAATCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.40
Consensus pattern (21 bp):
TTGAGAAAATTATAGTTGAGG
Found at i:70321980 original size:44 final size:44
Alignment explanation
Indices: 70321841--70321989 Score: 131
Period size: 44 Copynumber: 3.4 Consensus size: 44
70321831 CACAGATCTT
* * * ** *
70321841 ACCCCATAAGTAGTAGGGGAACAGATCGAAGGCAACGAGCTTTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
* * * * *
70321885 ACCCCCTAAGCAGTAGGGTAACA-AGTTGAAGTTCAT-AGATCTTA
1 ACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGATAATGAGCT-TTA
* * * *
70321929 TCACCCTAAGTAGTAGGGAAACAGATCGAAAATAATGAGCTTTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
70321973 ACCCCCTAAGCAGTAGG
1 ACCCCCTAAGCAGTAGG
70321990 ATAACAAGCC
Statistics
Matches: 80, Mismatches: 21, Indels: 8
0.73 0.19 0.07
Matches are distributed among these distances:
43 4 0.05
44 72 0.90
45 4 0.05
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (44 bp):
ACCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTA
Found at i:70321982 original size:88 final size:86
Alignment explanation
Indices: 70321825--70322033 Score: 251
Period size: 88 Copynumber: 2.4 Consensus size: 86
70321815 TTAGAATCAG
* **
70321825 TGAATTCACAGATCTTACCCCATAAGTAGTAGGGGAACAGATCGAAGGCAACGAGCTTTAACCCC
1 TGAATTCACAGATCTTACCCCATAAGTAGTAGGGAAACAGATCGAAAACAACGAGCTTTAACCCC
*
70321890 CTAAGCAGTAGGGTAACAAGT
66 CTAAGCAGTAGGATAACAAGT
* * *
70321911 TGAAGTTCATAGATCTTATCACCC-TAAGTAGTAGGGAAACAGATCGAAAATAATGAGCTTTAAC
1 TGAA-TTCACAGATCTTA-C-CCCATAAGTAGTAGGGAAACAGATCGAAAACAACGAGCTTTAAC
*
70321975 CCCCTAAGCAGTAGGATAACAAGC
63 CCCCTAAGCAGTAGGATAACAAGT
** * *
70321999 CAAATTTACAGA-CATTAACCCCCTAAGTAGTAGGG
1 TGAATTCACAGATC-TT-ACCCCATAAGTAGTAGGG
70322034 TAATAGGCTG
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
86 8 0.08
87 33 0.31
88 61 0.58
89 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (86 bp):
TGAATTCACAGATCTTACCCCATAAGTAGTAGGGAAACAGATCGAAAACAACGAGCTTTAACCCC
CTAAGCAGTAGGATAACAAGT
Found at i:70322228 original size:87 final size:86
Alignment explanation
Indices: 70322137--70322480 Score: 438
Period size: 87 Copynumber: 4.0 Consensus size: 86
70322127 CAGATTGAAG
*
70322137 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAACCCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
70322202 AAGCAGTAGGGTAACACGCTAA
66 AAGCAGTAGGGTAACA-GCTAA
* * * * * *
70322224 ATTTACAGACCTCAATCCCCTAAGCAATAGGGAAGCAGATTGAAGATGATGAGTCTTAAAACCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
70322289 AAGCAGTAGGGTAACAGACTAA
66 AAGCAGTAGGGTAACAG-CTAA
* * * ** **
70322311 ATTTATAGATCTTAACCCCCTAAACAGTAGGGAAACAGATCAAAGGCGATGAGCCTTAAACCCCT
1 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
70322376 AAGCAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACA-GCTAA
* * * * * ** *
70322398 TTTTACAAGATCTTAAACACCTAAGCAGTAGGGAAACAGA-TCAATGATGACAAGCCTTAACCCC
1 ATTTAC-AGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAA-GATGATGAGCCTTAAACCC
70322462 CTAAGCAGTAGGGTAACAG
64 CTAAGCAGTAGGGTAACAG
70322481 GTTGAAAATC
Statistics
Matches: 223, Mismatches: 30, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
86 1 0.00
87 159 0.71
88 63 0.28
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.20
Consensus pattern (86 bp):
ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGCTAA
Found at i:70322292 original size:44 final size:43
Alignment explanation
Indices: 70322153--70322486 Score: 191
Period size: 44 Copynumber: 7.6 Consensus size: 43
70322143 AGATCTCAAC
70322153 CCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAA
1 CCCCTAAGCAGTAGGG-AACAGATTGAAGATGATGAGTCTTAAA
* * * * * *
70322197 CCCCTAAGCAGTAGGGTAACACG-CT-AA-AT-TTACAGACCTCAAT
1 CCCCTAAGCAGTAGGG-AACA-GATTGAAGATGAT-GAG-TCTTAAA
*
70322240 CCCCTAAGCAATAGGGAAGCAGATTGAAGATGATGAGTCTTAAA
1 CCCCTAAGCAGTAGGGAA-CAGATTGAAGATGATGAGTCTTAAA
* * * *
70322284 ACCCTAAGCAGTAGGGTAACAGACT-AA-ATTTAT-AGATCTTAAC
1 CCCCTAAGCAGTAGGG-AACAGATTGAAGA-TGATGAG-TCTTAAA
* ** ** *
70322327 CCCCTAAACAGTAGGGAAACAGATCAAAGGCGATGAGCCTTAAA
1 CCCCTAAGCAGTAGGG-AACAGATTGAAGATGATGAGTCTTAAA
** ** * **
70322371 CCCCTAAGCAGTAGGGTAACAGGCT-AATTTTACAAGATCTTAAA
1 CCCCTAAGCAGTAGGG-AACAGATTGAAGATGATGAG-TCTTAAA
* * ** * *
70322415 CACCTAAGCAGTAGGGAAACAGA-TCAATGATGACAAGCCTTAAC
1 CCCCTAAGCAGTAGGG-AACAGATTGAA-GATGATGAGTCTTAAA
*
70322459 CCCCTAAGCAGTAGGGTAACAGGTTGAA
1 CCCCTAAGCAGTAGGG-AACAGATTGAA
70322487 AATCAAATAT
Statistics
Matches: 219, Mismatches: 53, Indels: 35
0.71 0.17 0.11
Matches are distributed among these distances:
41 1 0.00
42 10 0.05
43 61 0.28
44 128 0.58
45 18 0.08
46 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (43 bp):
CCCCTAAGCAGTAGGGAACAGATTGAAGATGATGAGTCTTAAA
Found at i:70323051 original size:38 final size:38
Alignment explanation
Indices: 70322962--70323044 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
70322952 AACCTTAATC
70322962 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
*
70323000 CCACCTACTCCACCACCCTTGTTGGCCACCTACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
70323038 CCACCTA
1 CCACCTA
70323045 AACCACCCCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.17, C:0.49, G:0.12, T:0.22
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
Found at i:70323465 original size:3 final size:3
Alignment explanation
Indices: 70323454--70323533 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
70323444 TTTTATTTTT
* *
70323454 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
70323497 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA T
70323534 ATATGCCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 7 0.11
3 46 0.74
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:70323511 original size:21 final size:18
Alignment explanation
Indices: 70323458--70323533 Score: 82
Period size: 18 Copynumber: 4.1 Consensus size: 18
70323448 ATTTTTTTAT
* *
70323458 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
70323477 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
70323495 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
70323516 TTTATATTATTA-TATTA
1 TTTATATTATTATTATTA
70323533 T
1 T
70323534 ATATGCCCTC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
17 6 0.12
18 18 0.36
19 9 0.18
20 5 0.10
21 12 0.24
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:70323534 original size:27 final size:26
Alignment explanation
Indices: 70323446--70323537 Score: 82
Period size: 25 Copynumber: 3.6 Consensus size: 26
70323436 GAGCTTTGTT
* * *
70323446 TTATT-TTTTTATTTTATTATTTTTA
1 TTATTATTTATATATTATTATTTATA
*
70323471 CTATTATTTATATTATTATTA-TTAT-
1 TTATTATTTATA-TATTATTATTTATA
* * *
70323496 TTCTCATGTATATATTATTATTTATA
1 TTATTATTTATATATTATTATTTATA
70323522 TTATTATATTATATAT
1 TTATTAT-TTATATAT
70323538 GCCCTCTCCA
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
24 8 0.16
25 16 0.31
26 13 0.25
27 14 0.27
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (26 bp):
TTATTATTTATATATTATTATTTATA
Found at i:70326979 original size:19 final size:19
Alignment explanation
Indices: 70326957--70327013 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
70326947 CATATTGTTC
70326957 ACATGATAATATATTTAAA
1 ACATGATAATATATTTAAA
*
70326976 ACATGATTCAACATATATTAAA
1 ACATGA-T-AATATAT-TTAAA
* *
70326998 ATA-GATTATATATTTA
1 ACATGATAATATATTTA
70327014 TAAATAGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
18 3 0.10
19 11 0.35
20 2 0.06
21 8 0.26
22 7 0.23
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (19 bp):
ACATGATAATATATTTAAA
Found at i:70327027 original size:19 final size:17
Alignment explanation
Indices: 70326985--70327033 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
70326975 AACATGATTC
70326985 AACATATATTAAAATAG
1 AACATATATTAAAATAG
**
70327002 ATTATATATTTATAAATAG
1 AACATATA-TTA-AAATAG
*
70327021 AACATATAATAAA
1 AACATATATTAAA
70327034 TCAACAACTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
17 8 0.32
18 5 0.20
19 12 0.48
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (17 bp):
AACATATATTAAAATAG
Found at i:70331121 original size:26 final size:26
Alignment explanation
Indices: 70331066--70331122 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
70331056 AGCTCTTCAT
* *
70331066 GAGCTTCCTGATTAAAGGCTATGTGT
1 GAGCTTCCTGATTAAAGGCTATCTGA
* *
70331092 GAGCTTCCTGATTTAATGGCTCTCT-A
1 GAGCTTCCTGA-TTAAAGGCTATCTGA
70331118 GAGCT
1 GAGCT
70331123 ACCCGATATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAGGCTATCTGA
Found at i:70331245 original size:24 final size:24
Alignment explanation
Indices: 70331175--70331245 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
70331165 AATCTTTCAG
**
70331175 ATATGGTTCTTTGTGAACTTCCCG
1 ATATGGTTCTTTGTGAACTTCCTA
* *
70331199 ACATTGTTCTTTGTGAACTTCCTA
1 ATATGGTTCTTTGTGAACTTCCTA
70331223 ATATGGTTCTTTGTGAACTTCCT
1 ATATGGTTCTTTGTGAACTTCCT
70331246 GATTATGGCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (24 bp):
ATATGGTTCTTTGTGAACTTCCTA
Found at i:70346336 original size:28 final size:28
Alignment explanation
Indices: 70346276--70346329 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
70346266 GTGGGAAGTA
* * *
70346276 ATTGGGCCTGATGGGCCATATGAATGTG
1 ATTGGACCGGATGGGCCATATGAACGTG
*
70346304 ATTGGACCGGATGGGCCATGTGAACG
1 ATTGGACCGGATGGGCCATATGAACG
70346330 ATATTGGGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.22, C:0.17, G:0.37, T:0.24
Consensus pattern (28 bp):
ATTGGACCGGATGGGCCATATGAACGTG
Found at i:70346685 original size:27 final size:27
Alignment explanation
Indices: 70346655--70346941 Score: 298
Period size: 27 Copynumber: 10.7 Consensus size: 27
70346645 ATAATAAAGA
70346655 AAAATTACTGAAATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
*
70346682 AAAATTACCGAAATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
*
70346709 AAAATTACCGAAATACCCTCGA-TTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* *
70346735 GAAATTACTGAAATACCTTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* * * *
70346762 AAAATTATTGAAACACCCTCAATTTTT
1 AAAATTACTGAAATACCCTCGATTTGT
*
70346789 AAAATTA-TCGAAACACCCTCGATTTGT
1 AAAATTACT-GAAATACCCTCGATTTGT
*
70346816 AAAATTACCG-AATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
** ** *
70346842 AAAATTACCAAAATACCCTTAATTTTT
1 AAAATTACTGAAATACCCTCGATTTGT
* * **
70346869 AAAATTACTGAAACACCCTTGATTCAT
1 AAAATTACTGAAATACCCTCGATTTGT
* * *
70346896 AAAATTA-TCAAAATACCCTTG-TAGTGT
1 AAAATTACT-GAAATACCCTCGAT-TTGT
70346923 AAAATTA-TCGAAATACCCT
1 AAAATTACT-GAAATACCCT
70346942 TGTAGTGTAA
Statistics
Matches: 224, Mismatches: 30, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
26 50 0.22
27 174 0.78
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGATTTGT
Found at i:70346792 original size:80 final size:80
Alignment explanation
Indices: 70346655--70346941 Score: 346
Period size: 80 Copynumber: 3.6 Consensus size: 80
70346645 ATAATAAAGA
* *
70346655 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTTTAAAATTACCGA
*
70346720 AATACCCTCGATTGT
66 AACACCCTCGATTGT
* * ** * *
70346735 GAAATTACTGAAATACCTTCGATTTGTAAAATTATTGAAACACCCTCAATTTTTAAAATTATCGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTTTAAAATTACCGA
70346800 AACACCCTCGATTTGT
66 AACACCCTCGA-TTGT
* * * *
70346816 AAAATTACCG-AATACCCTCGATTTGTAAAATTACCAAAATACCCTTAATTTTTAAAATTACTGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTTTAAAATTACCGA
* *
70346880 AACACCCTTGATTCAT
66 AACACCCTCGATT-GT
* * * *
70346896 AAAATTA-TCAAAATACCCTTG-TAGTGTAAAATTATCGAAATACCCT
1 AAAATTACT-GAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
70346942 TGTAGTGTAA
Statistics
Matches: 175, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.01
80 132 0.75
81 41 0.23
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTTTAAAATTACCGA
AACACCCTCGATTGT
Found at i:70346847 original size:107 final size:107
Alignment explanation
Indices: 70346655--70346967 Score: 371
Period size: 107 Copynumber: 2.9 Consensus size: 107
70346645 ATAATAAAGA
* * *
70346655 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGA
1 AAAATTACTGAAACACCCTCGATTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGA
* ** *
70346720 AATACCCTCGATTGTGAAATTACTGAAATA-CCTTCGATTTGT
66 AATACCCTCGATTGTAAAATTACCAAAATACCCTT-AATTTGT
* * * *
70346762 AAAATTATTGAAACACCCTCAATTTTTAAAATTATCGAAACACCCTCGATTTGTAAAATTACCG-
1 AAAATTACTGAAACACCCTCGATTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGA
*
70346826 AATACCCTCGATTTGTAAAATTACCAAAATACCCTTAATTTTT
66 AATACCCTCGA-TTGTAAAATTACCAAAATACCCTTAATTTGT
* * * * * *
70346869 AAAATTACTGAAACACCCTTGATTCATAAAATTATCAAAATACCCTTG-TAGTGTAAAATTATCG
1 AAAATTACTGAAACACCCTCGATTTATAAAATTATCGAAATACCCTCGAT-TTGTAAAATTACCG
* * * *
70346933 AAATACCCTTGTAGTGTAAAATGACCAACATACCC
65 AAATACCCTCG-ATTGTAAAATTACCAAAATACCC
70346968 CTATAGGGTA
Statistics
Matches: 176, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
106 12 0.07
107 131 0.74
108 32 0.18
109 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (107 bp):
AAAATTACTGAAACACCCTCGATTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGA
AATACCCTCGATTGTAAAATTACCAAAATACCCTTAATTTGT
Found at i:70346953 original size:54 final size:51
Alignment explanation
Indices: 70346655--70346981 Score: 172
Period size: 54 Copynumber: 6.1 Consensus size: 51
70346645 ATAATAAAGA
* * ** *
70346655 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGT
1 AAAATTAC-GAAATACCCTTGA-TTGTAAAATTACCAAAATACCCTTTA-GTGT
* * ** * *
70346709 AAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATA-CCTTCGATTTGT
1 AAAATTA-CGAAATACCCTTGATTGTAAAATTACCAAAATACCCTT-TA-GTGT
* * ** * * * * ** *
70346762 AAAATTATTGAAACACCCTCAATTTTTAAAATTATCGAAACACCCTCGATTTGT
1 AAAATTA-CGAAATACCCTTGA-TTGTAAAATTACCAAAATACCCTTTA-GTGT
* * * *
70346816 AAAATTACCG-AATACCCTCGATTTGTAAAATTACCAAAATACCCTTAATTTTT
1 AAAATTA-CGAAATACCCTTGA-TTGTAAAATTACCAAAATACCCTTTA-GTGT
* * *
70346869 AAAATTACTGAAACACCCTTGATTCATAAAATTATCAAAATACCCTTGTAGTGT
1 AAAATTAC-GAAATACCCTTGATT-GTAAAATTACCAAAATACCCTT-TAGTGT
* * * * *
70346923 AAAATTATCGAAATACCCTTGTAGTGTAAAATGACCAACATACCCCTATAGGGT
1 AAAATTA-CGAAATACCCTTG-ATTGTAAAATTACCAAAATA-CCCTTTAGTGT
70346977 AAAAT
1 AAAAT
70346982 GACTATTTTG
Statistics
Matches: 223, Mismatches: 39, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
52 4 0.02
53 86 0.39
54 121 0.54
55 12 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (51 bp):
AAAATTACGAAATACCCTTGATTGTAAAATTACCAAAATACCCTTTAGTGT
Found at i:70346965 original size:27 final size:26
Alignment explanation
Indices: 70346906--70346984 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
70346896 AAAATTATCA
* *
70346906 AAATACCCTTGTAGTGTAAAATTATCG
1 AAATACCCTTGTAGTGTAAAATGA-CC
70346933 AAATACCCTTGTAGTGTAAAATGACC
1 AAATACCCTTGTAGTGTAAAATGACC
* * *
70346959 AACATACCCCTATAGGGTAAAATGAC
1 AA-ATACCCTTGTAGTGTAAAATGAC
70346985 TATTTTGCCC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (26 bp):
AAATACCCTTGTAGTGTAAAATGACC
Found at i:70356088 original size:43 final size:43
Alignment explanation
Indices: 70355939--70356089 Score: 139
Period size: 42 Copynumber: 3.5 Consensus size: 43
70355929 TAGGATTCCA
* * *
70355939 ATATGTGATTTCATGTAAGACCACT-TCTGGGA-TGATGGCATAG
1 ATATTTGATTACATGTAAGACC-CTGTCTGGGACAG-TGGCATAG
* * * * *
70355982 AT-TTGAGATTTACATGTAAGACCATGTCTGGGACATTGACATCG
1 ATATT-TGA-TTACATGTAAGACCCTGTCTGGGACAGTGGCATAG
* * *
70356026 -TATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATAG
1 ATATTTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATAG
70356068 ATATTTGATTACATGTAAGACC
1 ATATTTGATTACATGTAAGACC
70356090 TCATCTGGGA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
42 30 0.36
43 26 0.31
44 27 0.33
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (43 bp):
ATATTTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATAG
Found at i:70356097 original size:43 final size:44
Alignment explanation
Indices: 70355939--70356108 Score: 122
Period size: 43 Copynumber: 4.0 Consensus size: 44
70355929 TAGGATTCCA
* * * * *
70355939 ATATGTGATTTCATGTAAGACCACTTCTGGGA-TGATGGCATAG
1 ATATTTGATTACATGTAAGACCTCGTCTGGGACAGATGGCATAG
* * * *
70355982 AT-TTGAGATTTACATGTAAGACCAT-GTCTGGGACA-TTGACATCG
1 ATATT-TGA-TTACATGTAAGACC-TCGTCTGGGACAGATGGCATAG
* * *
70356026 -TATATGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATAG
1 ATATTTGATTACATGTAAGACCTC-GTCTGGGACAGATGGCATAG
* *
70356068 ATATTTGATTACATGTAAGACCTCATCTGGGAC-GTTGGCAT
1 ATATTTGATTACATGTAAGACCTCGTCTGGGACAGATGGCAT
70356109 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 19, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 28 0.29
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (44 bp):
ATATTTGATTACATGTAAGACCTCGTCTGGGACAGATGGCATAG
Found at i:70356123 original size:86 final size:86
Alignment explanation
Indices: 70355944--70356100 Score: 207
Period size: 86 Copynumber: 1.8 Consensus size: 86
70355934 TTCCAATATG
* * *
70355944 TGATTTCATGTAAGACCACTTCTGGGATGATGGCATAGATTTGAGATTTACATGTAAGACCATGT
1 TGATTTCGTGTAAGACCACTTCTGGGAAGATGGCATAGATTTGAGATTTACATGTAAGACCATAT
70356009 CTGGGACATTGACATCGTATA
66 CTGGGACATTGACATCGTATA
*
70356030 TGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATAGATATT-TGA-TTACATGTAAGACC-
1 TGATTTCGTGTAAGACCACT-TCTGGGA-AGATGGCATAGAT-TTGAGATTTACATGTAAGACCA
70356090 TCATCTGGGAC
63 T-ATCTGGGAC
70356101 GTTGGCATTG
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
84 1 0.02
85 24 0.38
86 35 0.56
87 3 0.05
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (86 bp):
TGATTTCGTGTAAGACCACTTCTGGGAAGATGGCATAGATTTGAGATTTACATGTAAGACCATAT
CTGGGACATTGACATCGTATA
Found at i:70358213 original size:26 final size:26
Alignment explanation
Indices: 70358183--70358235 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
70358173 GGTCATGACA
70358183 TAGCTACAAGGTGCTGCTCACACAAG
1 TAGCTACAAGGTGCTGCTCACACAAG
70358209 TAGCTACAAGGTGCTGCTCACACAAG
1 TAGCTACAAGGTGCTGCTCACACAAG
70358235 T
1 T
70358236 TGATAAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (26 bp):
TAGCTACAAGGTGCTGCTCACACAAG
Found at i:70359987 original size:22 final size:22
Alignment explanation
Indices: 70359947--70359989 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
70359937 GACTATGCGA
*
70359947 TCTAAGCTCATGAGCTATGTGG
1 TCTAAGCTCATGAGATATGTGG
*
70359969 TCTAAGCTCATGATATATGTG
1 TCTAAGCTCATGAGATATGTG
70359990 ACGAATGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (22 bp):
TCTAAGCTCATGAGATATGTGG
Found at i:70364601 original size:15 final size:15
Alignment explanation
Indices: 70364581--70364610 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70364571 CATACCAATA
70364581 GTATAATTTCTTAAT
1 GTATAATTTCTTAAT
70364596 GTATAATTTCTTAAT
1 GTATAATTTCTTAAT
70364611 CATTTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (15 bp):
GTATAATTTCTTAAT
Found at i:70368968 original size:13 final size:12
Alignment explanation
Indices: 70368924--70368975 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
70368914 AAATTTTCAA
*
70368924 TTTATATAATTT
1 TTTATAAAATTT
70368936 TTTATAAAATTT
1 TTTATAAAATTT
**
70368948 TGGAATAAAATTAT
1 T-TTATAAAATT-T
70368962 TTTATAAATATTT
1 TTTATAAA-ATTT
70368975 T
1 T
70368976 GAATTTTAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
12 12 0.38
13 15 0.47
14 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (12 bp):
TTTATAAAATTT
Found at i:70369384 original size:16 final size:16
Alignment explanation
Indices: 70369363--70369393 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70369353 AAGAAATTAG
*
70369363 ATTAATTATTTTTATT
1 ATTAATTAGTTTTATT
70369379 ATTAATTAGTTTTAT
1 ATTAATTAGTTTTAT
70369394 GATATTTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTAATTAGTTTTATT
Found at i:70375092 original size:50 final size:50
Alignment explanation
Indices: 70374995--70375211 Score: 195
Period size: 50 Copynumber: 4.3 Consensus size: 50
70374985 TAGTAGCTTC
* ** ** * *
70374995 CACTTAGTACTACACATGCAACC-AATAATCTGGTACACGTAGTAGCCTA
1 CACTTAGTACTACACACGTGACCTAACCATCTGGTACACGTAGAAGCCTG
* * *
70375044 CATTTAGTACTACGCACGTGACCTAACCATCTGATACACGTAGAAGCCTG
1 CACTTAGTACTACACACGTGACCTAACCATCTGGTACACGTAGAAGCCTG
* * * * **
70375094 CACTTAGTACCACACATGTGACTTAACTATCTGGTACACGTA-ATAGTTTG
1 CACTTAGTACTACACACGTGACCTAACCATCTGGTACACGTAGA-AGCCTG
*** * *
70375144 CACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTG
1 CACTTAGTACTACACACGTGACCT--AACCATCTGGTACACGTAGAAGCCTG
*
70375196 CACATAGTACTACACA
1 CACTTAGTACTACACA
70375212 TGTGTTCTCA
Statistics
Matches: 132, Mismatches: 31, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
49 19 0.14
50 81 0.61
52 32 0.24
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (50 bp):
CACTTAGTACTACACACGTGACCTAACCATCTGGTACACGTAGAAGCCTG
Found at i:70375154 original size:100 final size:101
Alignment explanation
Indices: 70375022--70375215 Score: 264
Period size: 100 Copynumber: 1.9 Consensus size: 101
70375012 GCAACCAATA
* * * * *
70375022 ATCTGGTACACGTAGTAGCCTACATTTAGTACTACGCACGTGACCT-AACCATCTGATACACGTA
1 ATCTGGTACACGTAATAGCCTACACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATA
*
70375086 GAAGCCTGCACTTAGTACCACACATGTGACTTAACT
66 GAAGCCTGCACATAGTACCACACATGTGACTTAACT
** * *
70375122 ATCTGGTACACGTAATAGTTTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACAT
1 ATCTGGTACACGTAATAGCCTACACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACAT
* *
70375187 AGTAGCCTGCACATAGTACTACACATGTG
65 AGAAGCCTGCACATAGTACCACACATGTG
70375216 TTCTCACAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 40 0.50
102 40 0.50
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (101 bp):
ATCTGGTACACGTAATAGCCTACACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATA
GAAGCCTGCACATAGTACCACACATGTGACTTAACT
Found at i:70388740 original size:44 final size:43
Alignment explanation
Indices: 70388642--70388760 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 43
70388632 TCAAACATCA
* *
70388642 ATGCC-ACTGTCCCAAACAGGGTCTTACAC-AAAATCAGATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAAATCAGATACG
*
70388684 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAA-CAGA-AGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAAATCAGATA--CG
* *
70388728 ATGCTAACGTCCCAGACGTGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAA
70388761 TCACATAACT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
42 25 0.38
43 8 0.12
44 33 0.50
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAAATCAGATACG
Found at i:70390192 original size:42 final size:42
Alignment explanation
Indices: 70390146--70390263 Score: 110
Period size: 42 Copynumber: 2.8 Consensus size: 42
70390136 TGGCGTTGAT
* *
70390146 ATGAGATTTCGTGTAAGACCACGTCTGGGACATGACGTCAAA
1 ATGAGATTTCATGTAAGACCACGTCTGGGACATGACATCAAA
* * ** * * * *
70390188 ATGAGAATTCATATAAGACCATATTTGGGATATGGCATCAAT
1 ATGAGATTTCATGTAAGACCACGTCTGGGACATGACATCAAA
* ** *
70390230 TTGAGATCCCATGTAAGACTACGTCTGGGACATG
1 ATGAGATTTCATGTAAGACCACGTCTGGGACATG
70390264 GCATTGGCAT
Statistics
Matches: 56, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
ATGAGATTTCATGTAAGACCACGTCTGGGACATGACATCAAA
Found at i:70395868 original size:35 final size:35
Alignment explanation
Indices: 70395822--70395891 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
70395812 AAACCAAAGC
70395822 TATTTGACACCTTAAACTAATAGAACATGCATTTT
1 TATTTGACACCTTAAACTAATAGAACATGCATTTT
70395857 TATTTGACACCTTAAACTAATAGAACATGCATTTT
1 TATTTGACACCTTAAACTAATAGAACATGCATTTT
70395892 ACACTTTACG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (35 bp):
TATTTGACACCTTAAACTAATAGAACATGCATTTT
Found at i:70398682 original size:46 final size:46
Alignment explanation
Indices: 70398615--70398735 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 46
70398605 GTGAGCTAGT
*
70398615 GTAAGATATGTCTGGGACATGCATCGGCCACATT-ATGAC-AGCCAGA
1 GTAAGAAATGTCTGGGACATGCATCGGCC-CATTGA-GACGAGCCAGA
* * *
70398661 GTAAGAAATGTCTGGGACATGCATTGG--CATTGAGACGAGAGCTAGT
1 GTAAGAAATGTCTGGGACATGCATCGGCCCATTGAGAC--GAGCCAGA
*
70398707 GTAAGACATGTCTGGGACATGCATCGGCC
1 GTAAGAAATGTCTGGGACATGCATCGGCC
70398736 TCGGGATATA
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
43 7 0.11
44 1 0.02
46 55 0.87
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
GTAAGAAATGTCTGGGACATGCATCGGCCCATTGAGACGAGCCAGA
Found at i:70398853 original size:49 final size:49
Alignment explanation
Indices: 70398795--70398925 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 49
70398785 TGTTGTGTGT
* *
70398795 CAGTGTAAGACCTGTCTGGGACATGTCATCGACACT-GATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAGATGAAAGC
* * *
70398844 CAGTGTAAGACCTGTTTGGGACATGACATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGACATCGA-CCTCGATAGATGAAAGC
* *
70398893 TAGTGTAAGACTTGTCTGGGACATGACATCGAC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGAC
70398926 TTTAATGTAC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
48 3 0.04
49 67 0.94
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAAGC
Found at i:70400538 original size:29 final size:29
Alignment explanation
Indices: 70400502--70400560 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
70400492 ACATCATATT
70400502 TCATGATAATAAGTATCATGTCATATAAA
1 TCATGATAATAAGTATCATGTCATATAAA
70400531 TCATGATAATAAGTATCATGTCATATAAA
1 TCATGATAATAAGTATCATGTCATATAAA
70400560 T
1 T
70400561 ATCATTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (29 bp):
TCATGATAATAAGTATCATGTCATATAAA
Found at i:70400550 original size:15 final size:15
Alignment explanation
Indices: 70400502--70400550 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
70400492 ACATCATATT
70400502 TCATGATAATAAGTA
1 TCATGATAATAAGTA
70400517 TCATG-TCATATAA--A
1 TCATGAT-A-ATAAGTA
70400531 TCATGATAATAAGTA
1 TCATGATAATAAGTA
70400546 TCATG
1 TCATG
70400551 TCATATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 4 0.14
14 8 0.28
15 13 0.45
16 4 0.14
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (15 bp):
TCATGATAATAAGTA
Found at i:70400563 original size:16 final size:16
Alignment explanation
Indices: 70400510--70400565 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
70400500 TTTCATGATA
*
70400510 ATAAGTATCATGTCAT
1 ATAAATATCATGTCAT
70400526 AT-AA-ATCATG--AT
1 ATAAATATCATGTCAT
*
70400538 AATAAGTATCATGTCAT
1 -ATAAATATCATGTCAT
70400555 ATAAATATCAT
1 ATAAATATCAT
70400566 TAAAATACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
12 2 0.06
13 2 0.06
14 7 0.22
15 7 0.22
16 12 0.38
17 2 0.06
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (16 bp):
ATAAATATCATGTCAT
Found at i:70401623 original size:27 final size:27
Alignment explanation
Indices: 70401593--70401646 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
70401583 CGGATTTGTG
70401593 GTCACAAAACCACTATTCCGATTAGGC
1 GTCACAAAACCACTATTCCGATTAGGC
* *
70401620 GTCACGAAATCACTATTCCGATTAGGC
1 GTCACAAAACCACTATTCCGATTAGGC
70401647 CCTAATTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (27 bp):
GTCACAAAACCACTATTCCGATTAGGC
Found at i:70405770 original size:24 final size:23
Alignment explanation
Indices: 70405742--70405786 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
70405732 ATGTTGCCCT
*
70405742 GCTTC-AACTCAAGAAACTCTTTAC
1 GCTTCTAA-TCAACAAA-TCTTTAC
70405766 GCTTCTAATCAACAAATCTTT
1 GCTTCTAATCAACAAATCTTT
70405787 CACTGATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (23 bp):
GCTTCTAATCAACAAATCTTTAC
Found at i:70417104 original size:39 final size:39
Alignment explanation
Indices: 70417037--70417336 Score: 404
Period size: 39 Copynumber: 7.7 Consensus size: 39
70417027 CACCAACACA
* * * * * * *
70417037 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * * * *
70417077 AAGCCTGCGGACCTTAAGTCCGCATATAGTACCAGTACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
70417116 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
70417155 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* *
70417195 AAGCCTGCGGACCTTAAGTCTGGATACAATTCCAACACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
70417234 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
70417273 AAGCCTGC-GACCTTAAGTCCGGATACAATTCCAGCACA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
70417311 AAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATA
70417337 TACATCAAAT
Statistics
Matches: 236, Mismatches: 22, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
38 37 0.16
39 157 0.67
40 42 0.18
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:70417211 original size:79 final size:78
Alignment explanation
Indices: 70417037--70417336 Score: 404
Period size: 79 Copynumber: 3.8 Consensus size: 78
70417027 CACCAACACA
* * * * * * * *
70417037 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGCAT
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * *
70417102 ATAGTACCAGTACG
65 ACAATTCCAGCACG
* * * *
70417116 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGTCCGGAT
70417181 ACAATTCCAGCACG
65 ACAATTCCAGCACG
* *
70417195 AAGCCTGCGGACCTTAAGTCTGGATACAATTCCAACACGAAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
70417260 CAATTCCAGCACG
66 CAATTCCAGCACG
*
70417273 AAGCCTGC-GACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
70417337 TACATCAAAT
Statistics
Matches: 195, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
77 53 0.27
78 68 0.35
79 74 0.38
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (78 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
CAATTCCAGCACG
Found at i:70417250 original size:118 final size:118
Alignment explanation
Indices: 70417037--70417336 Score: 433
Period size: 118 Copynumber: 2.6 Consensus size: 118
70417027 CACCAACACA
* * * * * *
70417037 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGCAT
1 AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * ** *
70417102 ATAGTACCAGTACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
70417155 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCTGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
*
70417220 ACAATTCCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
70417273 AAGCCTGC--GACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
70417336 A
66 A
70417337 TACATCAAAT
Statistics
Matches: 163, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
116 51 0.31
118 112 0.69
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (118 bp):
AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATACCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:70420211 original size:27 final size:26
Alignment explanation
Indices: 70420178--70420271 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
70420168 AACCCTAAAA
*
70420178 TAGGTAAAATAACCATAATACCCCTG
1 TAGGTAAAATGACCATAATACCCCTG
* * *
70420204 TAGAGTAAATTGACCTTAATGCCCCTG
1 TAG-GTAAAATGACCATAATACCCCTG
*
70420231 TAGGGTAAAATGACCGTAATACCCCTG
1 TA-GGTAAAATGACCATAATACCCCTG
70420258 TATGGTAAAATGAC
1 TA-GGTAAAATGAC
70420272 GATTATGCCC
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.05
27 54 0.93
28 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (26 bp):
TAGGTAAAATGACCATAATACCCCTG
Found at i:70422385 original size:27 final size:27
Alignment explanation
Indices: 70422355--70422423 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
70422345 TGTAGGGTAG
*
70422355 AATTACTGAAATATCCTT-GGTTTACAA
1 AATTACTAAAATA-CCTTCGGTTTACAA
* **
70422382 AATTACCAAAATACCTTCGGTTTGTAA
1 AATTACTAAAATACCTTCGGTTTACAA
70422409 AATTACTAAAATACC
1 AATTACTAAAATACC
70422424 CTCAACTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 4 0.11
27 32 0.89
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AATTACTAAAATACCTTCGGTTTACAA
Found at i:70422556 original size:81 final size:81
Alignment explanation
Indices: 70422380--70422559 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 81
70422370 CTTGGTTTAC
* * ** * * *
70422380 AAAATTACCAAAATACCTTCGGTTTGTAAAATTACTAAAATACCCTCAACTTATAAAATTATCGA
1 AAAATTACAAAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCAACTTAGAAAATTACCAA
*
70422445 AATACCCTCAACTTGT
66 AATACCCTCAACTTGG
*** * *
70422461 AAAATTATGGAAATACCCTCAATTTGTAAAATTACTAAAATACCC-CTAATTTGGAAAATTACCA
1 AAAATTACAAAAATACCCTCAATTTGTAAAATTACTAAAATACCCTC-AACTTAGAAAATTACCA
** *
70422525 AAATACCCTTGATTTGG
65 AAATACCCTCAACTTGG
70422542 AAAATTACAAAAATACCC
1 AAAATTACAAAAATACCC
70422560 CTGATTTACA
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 79 0.99
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTACAAAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCAACTTAGAAAATTACCAA
AATACCCTCAACTTGG
Found at i:70422626 original size:28 final size:27
Alignment explanation
Indices: 70422363--70422631 Score: 166
Period size: 27 Copynumber: 9.9 Consensus size: 27
70422353 AGAATTACTG
* * * *
70422363 AAATATCCTTGGTTTACAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACAA
* * *
70422390 AAATA-CCTTCGGTTTGTAAAATTACTA
1 AAATACCCTT-GATTTGCAAAATTACAA
** * ** *
70422417 AAATACCCTCAACTTATAAAATTATC-G
1 AAATACCCTTGATTTGCAAAATTA-CAA
** * * ***
70422444 AAATACCCTCAACTTGTAAAATTATGG
1 AAATACCCTTGATTTGCAAAATTACAA
** * *
70422471 AAATACCCTCAATTTGTAAAATTACTA
1 AAATACCCTTGATTTGCAAAATTACAA
* * * *
70422498 AAATACCCCTAATTTGGAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACAA
*
70422525 AAATACCCTTGATTTGGAAAATTACAA
1 AAATACCCTTGATTTGCAAAATTACAA
* * *
70422552 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCTTGATTTGCAAAATTACAA
70422579 AAATACCCTTGACTTT-CAAAAATTACAA
1 AAATACCCTTGA-TTTGC-AAAATTACAA
** *
70422607 AAATACTATTGGTTTGCAAAATTAC
1 AAATACCCTTGATTTGCAAAATTAC
70422632 CGAAACATCC
Statistics
Matches: 204, Mismatches: 31, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.02
27 174 0.85
28 26 0.13
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTACAA
Found at i:70422967 original size:41 final size:41
Alignment explanation
Indices: 70422908--70423016 Score: 128
Period size: 41 Copynumber: 2.7 Consensus size: 41
70422898 GGGGGAAGAA
* * *
70422908 ATTAAGGATCGCACGGTTGCTTGACGACTATAGATCCACCG
1 ATTAAGAATCACATGGTTGCTTGACGACTATAGATCCACCG
*** * * *
70422949 ATTAAGAATTGTATGGTTGCTTGACGACTGTGGATCCGCCG
1 ATTAAGAATCACATGGTTGCTTGACGACTATAGATCCACCG
*
70422990 ATTAAGGATCACATGGTTGCTTGACGA
1 ATTAAGAATCACATGGTTGCTTGACGA
70423017 TCGTGAATCC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (41 bp):
ATTAAGAATCACATGGTTGCTTGACGACTATAGATCCACCG
Found at i:70423224 original size:22 final size:22
Alignment explanation
Indices: 70423172--70423236 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
70423162 GCCAATTATT
* *
70423172 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
70423194 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
70423216 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
70423237 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:70423458 original size:22 final size:22
Alignment explanation
Indices: 70423433--70423479 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
70423423 GTTGCTGTGA
**
70423433 TGTTTACGGCTATGTGTTGTCC
1 TGTTTACGGCTATGTCCTGTCC
70423455 TGTTTACGGCTATGTCCTGTCC
1 TGTTTACGGCTATGTCCTGTCC
70423477 TGT
1 TGT
70423480 CTATGGCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.21, G:0.26, T:0.45
Consensus pattern (22 bp):
TGTTTACGGCTATGTCCTGTCC
Found at i:70428452 original size:56 final size:54
Alignment explanation
Indices: 70428382--70428538 Score: 190
Period size: 56 Copynumber: 2.8 Consensus size: 54
70428372 GACATAGCAT
* * *
70428382 GCCTCTCAATAGGGCTACATATGAGCACCCGGACCTAGCATGCATCAC-ATTACCAC
1 GCCTCTCAACAGGGCTACATA--AGCTCCCGGACCTAGCATGTATCACAATTA-CAC
* * *
70428438 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCGTGTACCACATAATTACAT
1 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCATGTATCAC--AATTACAC
* *
70428494 GCCTCTCAACGGGGCTACACAAGCTCCCGGACCTAGCATGTATCA
1 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCATGTATCA
70428539 TGTCATCAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
54 21 0.24
56 63 0.72
57 4 0.05
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.20
Consensus pattern (54 bp):
GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCATGTATCACAATTACAC
Found at i:70429966 original size:27 final size:27
Alignment explanation
Indices: 70429936--70430018 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 27
70429926 TAGGTAAACA
*
70429936 ACCGTAATACCCTTGTAGGGTAAAATG
1 ACCGTAATACCCCTGTAGGGTAAAATG
* *
70429963 ACCGTAATGCCCCTGTAGGCTAAAATG
1 ACCGTAATACCCCTGTAGGGTAAAATG
* *
70429990 ACCATAATACCCCTGTATGGTAAAATG
1 ACCGTAATACCCCTGTAGGGTAAAATG
70430017 AC
1 AC
70430019 GATTATGCCC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (27 bp):
ACCGTAATACCCCTGTAGGGTAAAATG
Found at i:70435511 original size:7 final size:7
Alignment explanation
Indices: 70435490--70435526 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
70435480 ACCCCTTCAT
70435490 TCCCTCA
1 TCCCTCA
* *
70435497 TTCATCA
1 TCCCTCA
70435504 TCCCTCA
1 TCCCTCA
70435511 TCCCTCA
1 TCCCTCA
70435518 TCCCTCA
1 TCCCTCA
70435525 TC
1 TC
70435527 ATTCTCTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.16, C:0.51, G:0.00, T:0.32
Consensus pattern (7 bp):
TCCCTCA
Found at i:70458657 original size:30 final size:30
Alignment explanation
Indices: 70458623--70458683 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70458613 TCCTTAACTC
70458623 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
70458653 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
70458683 A
1 A
70458684 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:70473518 original size:47 final size:47
Alignment explanation
Indices: 70473456--70473558 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 47
70473446 TATGGCAGGT
* ** * *
70473456 CCAAATCAAGGTAACTTA-TTCTGGAGTACTTATACCATGGCCCGTAG
1 CCAAATCAAAGTAACTTATTTC-AAAATACTTATACCATGGCCCATAG
* *
70473503 CCAAATCAAAGTAACTTCTTTCAAAATACTTATATCATGGCCCATAG
1 CCAAATCAAAGTAACTTATTTCAAAATACTTATACCATGGCCCATAG
70473550 CCAAATCAA
1 CCAAATCAA
70473559 GGTATTATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 45 0.94
48 3 0.06
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (47 bp):
CCAAATCAAAGTAACTTATTTCAAAATACTTATACCATGGCCCATAG
Found at i:70484988 original size:40 final size:40
Alignment explanation
Indices: 70484934--70485126 Score: 298
Period size: 40 Copynumber: 4.8 Consensus size: 40
70484924 GGATATAGCT
*
70484934 ACTCGCCCAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
*
70484974 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* *
70485014 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* * *
70485054 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCA-TAGTA
*
70485094 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
70485127 TATTATCCGA
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
Found at i:70495210 original size:34 final size:34
Alignment explanation
Indices: 70495167--70495250 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 34
70495157 CTATTTGCAT
*
70495167 ACTGTTACTGTAATGGGCCCAGGCCCAGACTGCC
1 ACTGTTACTGTAATGGGCCCAGGCCCAGACTGAC
* * *
70495201 ACTGTTACTGTAAT-GGCTCTGGCCCAGACTGAT
1 ACTGTTACTGTAATGGGCCCAGGCCCAGACTGAC
* *
70495234 ATTGTTACTGAAATGGG
1 ACTGTTACTGTAATGGG
70495251 TTAAGGCCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 27 0.63
34 16 0.37
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (34 bp):
ACTGTTACTGTAATGGGCCCAGGCCCAGACTGAC
Found at i:70531535 original size:29 final size:29
Alignment explanation
Indices: 70531503--70531610 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
70531493 ATATAATGAG
70531503 ATTGGGCCTAATGGGCCATATGAATGTGA
1 ATTGGGCCTAATGGGCCATATGAATGTGA
* * *
70531532 ATTGGGACTGATGGGCCATATGAACGTGA
1 ATTGGGCCTAATGGGCCATATGAATGTGA
* * * *
70531561 ATTGGG-CTGGATGGGTCATATAAATG-AA
1 ATTGGGCCT-AATGGGCCATATGAATGTGA
*
70531589 ATTGGGCCTAGTGGGCCATATG
1 ATTGGGCCTAATGGGCCATATG
70531611 CATCTATGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
28 18 0.27
29 48 0.73
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (29 bp):
ATTGGGCCTAATGGGCCATATGAATGTGA
Found at i:70542879 original size:40 final size:39
Alignment explanation
Indices: 70542842--70543019 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 39
70542832 ATATCCGGAC
70542842 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
70542882 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
70542922 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
70542962 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
70543001 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
70543020 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.27
40 85 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:70542932 original size:80 final size:79
Alignment explanation
Indices: 70542848--70543019 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 79
70542838 GGACTAAGAT
*
70542848 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
70542912 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * *
70542928 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
70542993 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
70543007 CCGAAGGCATTTG
1 CCGAAGGCATTTG
70543020 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 38 0.47
80 39 0.49
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:70543037 original size:79 final size:80
Alignment explanation
Indices: 70542875--70543052 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
70542865 AGATACAAAT
* * * *
70542875 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
70542940 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
70542955 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
70543019 GAACGAG-GAGCTAGA
66 GAACGAGTGA-CTAAA
*
70543034 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70543053 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:70549200 original size:28 final size:26
Alignment explanation
Indices: 70549164--70549216 Score: 88
Period size: 28 Copynumber: 2.0 Consensus size: 26
70549154 AAGCATTGAA
70549164 ATATTCTTAATAATAATTTTATATTAAT
1 ATATTCTTAATAATAA--TTATATTAAT
70549192 ATATTCTTAATAATAATTATATTAA
1 ATATTCTTAATAATAATTATATTAA
70549217 GAATGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 9 0.36
28 16 0.64
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
ATATTCTTAATAATAATTATATTAAT
Found at i:70549205 original size:14 final size:14
Alignment explanation
Indices: 70549164--70549206 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
70549154 AAGCATTGAA
70549164 ATATTCTTAATAAT
1 ATATTCTTAATAAT
70549178 A-ATT-TTATATTAAT
1 ATATTCTTA-A-TAAT
70549192 ATATTCTTAATAAT
1 ATATTCTTAATAAT
70549206 A
1 A
70549207 ATTATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 3 0.12
13 4 0.16
14 11 0.44
15 4 0.16
16 3 0.12
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATTCTTAATAAT
Found at i:70549260 original size:58 final size:60
Alignment explanation
Indices: 70549179--70549338 Score: 159
Period size: 61 Copynumber: 2.7 Consensus size: 60
70549169 CTTAATAATA
* * * *
70549179 ATTTTATATTAATATAT-TCTTAATAATAATTATATTAAGAATGTTATTAAATTA-TA-TATT
1 ATTTT-TATTAAAATATAT-TTAATAATAATTATATTAA-AATATGACTAAATTATTATTATT
* * * *
70549239 A-TTTTATTAAACTGTATTTAATAATAATTATGTTAAAATATGACTAAATTATTTATTTTT
1 ATTTTTATTAAAATATATTTAATAATAATTATATTAAAATATGACTAAATTA-TTATTATT
*
70549299 ATTTTTATTAAAATATATTTAACAATAATCT-TATTAAAAT
1 ATTTTTATTAAAATATATTTAATAATAAT-TATATTAAAAT
70549339 TTAATAACAA
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
57 12 0.15
58 26 0.32
59 6 0.07
60 5 0.06
61 32 0.39
62 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (60 bp):
ATTTTTATTAAAATATATTTAATAATAATTATATTAAAATATGACTAAATTATTATTATT
Found at i:70549352 original size:25 final size:26
Alignment explanation
Indices: 70549303--70549352 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
70549293 ATTTTTATTT
*
70549303 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
70549329 TTATTAAAATTTA-ATAACAATAAT
1 TTATTAAAATATATATAACAATAAT
70549353 TATCTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:70549495 original size:44 final size:46
Alignment explanation
Indices: 70549426--70549518 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
70549416 TACAACATCT
70549426 ATTCCATTCAACCAAACACAAGAATT-C-AATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACTAATTACAGCTCTATTCC
* * * *
70549470 ATTCCATTCAACCAAACA-ATTGAATTACTGATTATAGTTCTATTCC
1 ATTCCATTCAACCAAACACA-AGAATTACTAATTACAGCTCTATTCC
70549516 ATT
1 ATT
70549519 ACAACTCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.55
45 1 0.02
46 17 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACACAAGAATTACTAATTACAGCTCTATTCC
Found at i:70549527 original size:16 final size:16
Alignment explanation
Indices: 70549508--70549569 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
70549498 TGATTATAGT
70549508 TCTATTCCATTACAAC
1 TCTATTCCATTACAAC
70549524 TCTATTCCATTACAAC
1 TCTATTCCATTACAAC
* * *
70549540 TATATT-CAGTTGCAGC
1 TCTATTCCA-TTACAAC
*
70549556 CCTATTCCATTACA
1 TCTATTCCATTACA
70549570 GTGAACCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
15 2 0.05
16 34 0.89
17 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37
Consensus pattern (16 bp):
TCTATTCCATTACAAC
Found at i:70565731 original size:54 final size:54
Alignment explanation
Indices: 70565546--70565742 Score: 220
Period size: 55 Copynumber: 3.6 Consensus size: 54
70565536 AACTTAGCAT
* * * ** *
70565546 TGCCATGTCTTGACATGGTTTTATGTGGTATCCTTGCCTTAT-GAACTCA-CTAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AA
* **
70565599 TGCCATGCCATGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
70565654 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
*
70565708 TGCCATGCCTTGGCATTGTCTTACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
70565743 ATCTTACCAG
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 32 0.26
54 41 0.34
55 43 0.36
56 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:70565779 original size:47 final size:47
Alignment explanation
Indices: 70565725--70565842 Score: 209
Period size: 47 Copynumber: 2.5 Consensus size: 47
70565715 CCTTGGCATT
* * *
70565725 GTCTTACATGATATCCTTATCTTACCAGATGCCATGTTCCAAACATG
1 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATG
70565772 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATG
1 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATG
70565819 GTCTTACATGGTATCCTTGTCTTA
1 GTCTTACATGGTATCCTTGTCTTA
70565843 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATG
Found at i:70566015 original size:44 final size:44
Alignment explanation
Indices: 70565935--70566021 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
70565925 TATCCTTAAC
* * *
70565935 CGTCAATTCCTCCTTAAATGTCATGTTATGAACATGGAATTTTT
1 CGTCAATTCCTCCTTAAATGCCATGGTATCAACATGGAATTTTT
* * *
70565979 CGTCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGACTTTT
1 CGTCAATTCCTCCTTAAATGCCATGGTATCAA-CATGGAATTTT
70566022 AGATATCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (44 bp):
CGTCAATTCCTCCTTAAATGCCATGGTATCAACATGGAATTTTT
Found at i:70569049 original size:21 final size:21
Alignment explanation
Indices: 70569015--70569054 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70569005 AATGGTCATG
*
70569015 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
70569036 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
70569055 TTTGTTTAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Done.