Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 210 of 373
Found at i:71362950 original size:40 final size:39
Alignment explanation
Indices: 71362852--71363074 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
71362842 TCCTCGTTCA
* * * *
71362852 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
71362891 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
71362930 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
71362970 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
71363010 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
71363051 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
71363075 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:71363034 original size:80 final size:79
Alignment explanation
Indices: 71362850--71363074 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
71362840 GCTCCTCGTT
* * * * *
71362850 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
71362914 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
71362929 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
71362994 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
71363009 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
71363073 GA
63 GA
71363075 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:71363083 original size:41 final size:41
Alignment explanation
Indices: 71363006--71363083 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71362996 TTTGTATCTC
* * *
71363006 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71363047 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71363084 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71370312 original size:39 final size:40
Alignment explanation
Indices: 71370267--71370438 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
71370257 GCTCCTCGTT
* * *
71370267 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
71370307 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
71370346 CGAATGCCTTCGGGACTTAACCCGAATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
71370386 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
71370426 CAAATGCCTTCGG
1 CAAATGCCTTCGG
71370439 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:71370367 original size:40 final size:39
Alignment explanation
Indices: 71370269--71370491 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
71370259 TCCTCGTTCA
* * * *
71370269 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
71370308 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
71370347 GAATGCCTTCGGGACTTAACCCGAATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
71370387 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
71370427 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
71370468 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
71370492 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 40 0.26
40 103 0.66
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:71370500 original size:41 final size:41
Alignment explanation
Indices: 71370423--71370500 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71370413 TTTGTATCTC
* * *
71370423 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71370464 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71370501 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71373565 original size:17 final size:19
Alignment explanation
Indices: 71373524--71373566 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
71373514 AGTATTTCAT
71373524 ATATTATTATATACATATG
1 ATATTATTATATACATATG
*
71373543 ATTATTATT-TTTACATATG
1 A-TATTATTATATACATATG
71373562 -TATTA
1 ATATTA
71373567 ATCCACACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
19 10 0.45
20 7 0.32
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (19 bp):
ATATTATTATATACATATG
Found at i:71374303 original size:17 final size:18
Alignment explanation
Indices: 71374278--71374315 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
71374268 GAAGTGGTTT
*
71374278 TGAATAAAAGTTA-AAAA
1 TGAACAAAAGTTATAAAA
*
71374295 TGAACAAAATTTATAAAA
1 TGAACAAAAGTTATAAAA
71374313 TGA
1 TGA
71374316 TTTTTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.26
Consensus pattern (18 bp):
TGAACAAAAGTTATAAAA
Found at i:71386743 original size:42 final size:42
Alignment explanation
Indices: 71386692--71386780 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
71386682 CTCGAACAGT
* *
71386692 TCAATGAGCTCGGATGCCACATATATCATGAACCTGAACCAC
1 TCAACGAGCTCGGATGCCACATATATCATGAACCCGAACCAC
*
71386734 TCAACGAGCTCGGATGCCACATATATCATGAACCCGGACCAC
1 TCAACGAGCTCGGATGCCACATATATCATGAACCCGAACCAC
71386776 TCAAC
1 TCAAC
71386781 AAGTTTGGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (42 bp):
TCAACGAGCTCGGATGCCACATATATCATGAACCCGAACCAC
Found at i:71391716 original size:42 final size:43
Alignment explanation
Indices: 71391669--71391824 Score: 174
Period size: 42 Copynumber: 3.7 Consensus size: 43
71391659 TACCATACCA
* * * *
71391669 ATGCCATATCCCAAATATAGTCTTATACAGGA-TCTCGTATCG
1 ATGCCATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
* * * *
71391711 ATGCCAATAGCCCAACTATGGTCTTACA-AAAAGTCTCGTATTG
1 ATGCC-ATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
* * *
71391754 ATGCCATATCCCAGATATGGTCTTACAC-GAAGCCTCATATAG
1 ATGCCATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
*
71391796 ATGCCATATCCCAGATATGGTCTTACACA
1 ATGCCATATCCCAAATATGGTCTTACACA
71391825 TAGTCTTAGT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 64 0.67
43 32 0.33
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
Found at i:71393855 original size:27 final size:27
Alignment explanation
Indices: 71393817--71393871 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
71393807 TACTAAAGTT
*
71393817 CAACTTTGTACCTAGAGCCTCTTATAA
1 CAACTTTGTACCCAGAGCCTCTTATAA
71393844 CAACTTTGTACCCAGAGCCTCTTATAA
1 CAACTTTGTACCCAGAGCCTCTTATAA
71393871 C
1 C
71393872 TTCTTCCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (27 bp):
CAACTTTGTACCCAGAGCCTCTTATAA
Found at i:71401376 original size:43 final size:43
Alignment explanation
Indices: 71401311--71401393 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
71401301 CCCAGATGTT
* * * *
71401311 ATCACATATCGATGCCACTGTCCTAGACAGGGTTTTATACGGA
1 ATCACATAACGATGCCAATGTCCCAGACAGGGTCTTATACGGA
* *
71401354 ATCATATAACGATGCCAATGTCCCAGACATGGTCTTATAC
1 ATCACATAACGATGCCAATGTCCCAGACAGGGTCTTATAC
71401394 TATTCCTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
ATCACATAACGATGCCAATGTCCCAGACAGGGTCTTATACGGA
Found at i:71409439 original size:27 final size:27
Alignment explanation
Indices: 71409409--71409463 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
71409399 GTGAAATGTG
71409409 TTTATTTTGATGTTTTATGGTAGAATA
1 TTTATTTTGATGTTTTATGGTAGAATA
71409436 TTTATTTTGATGTTTTATGGTAGAATA
1 TTTATTTTGATGTTTTATGGTAGAATA
71409463 T
1 T
71409464 GAAGCTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.18, T:0.56
Consensus pattern (27 bp):
TTTATTTTGATGTTTTATGGTAGAATA
Found at i:71411479 original size:16 final size:16
Alignment explanation
Indices: 71411460--71411496 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
71411450 TCTTGAGATA
71411460 TGTTTACTACGAGAAT
1 TGTTTACTACGAGAAT
71411476 TGTTTACTACGAGAAT
1 TGTTTACTACGAGAAT
71411492 TGTTT
1 TGTTT
71411497 GAACTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (16 bp):
TGTTTACTACGAGAAT
Found at i:71412529 original size:11 final size:11
Alignment explanation
Indices: 71412513--71412537 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
71412503 ATTCGATTCG
71412513 AAAAAATCGAA
1 AAAAAATCGAA
71412524 AAAAAATCGAA
1 AAAAAATCGAA
71412535 AAA
1 AAA
71412538 CAGATGGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAAATCGAA
Found at i:71412656 original size:9 final size:9
Alignment explanation
Indices: 71412644--71412676 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
71412634 GAATTATTCG
71412644 AATCGAGTT
1 AATCGAGTT
71412653 AATCGAGTT
1 AATCGAGTT
*
71412662 AATCGAATT
1 AATCGAGTT
71412671 AATCGA
1 AATCGA
71412677 ATCAACTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:71412677 original size:9 final size:9
Alignment explanation
Indices: 71412644--71412689 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
71412634 GAATTATTCG
*
71412644 AATCGAGTT
1 AATCGAATT
*
71412653 AATCGAGTT
1 AATCGAATT
71412662 AATCGAATT
1 AATCGAATT
*
71412671 AATCGAATC
1 AATCGAATT
71412680 AACTCGAATT
1 AA-TCGAATT
71412690 TTTTTTTCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (9 bp):
AATCGAATT
Found at i:71412747 original size:9 final size:9
Alignment explanation
Indices: 71412733--71412766 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
71412723 ATTCTCAAAT
*
71412733 TCGAATAAC
1 TCGAATAAA
*
71412742 TCGAATAAT
1 TCGAATAAA
71412751 TCGAATAAA
1 TCGAATAAA
71412760 TCGAATA
1 TCGAATA
71412767 TAAACAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (9 bp):
TCGAATAAA
Found at i:71412753 original size:18 final size:18
Alignment explanation
Indices: 71412730--71412766 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
71412720 TGAATTCTCA
*
71412730 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCGAAT
71412748 AATTCGAATAAATCGAAT
1 AATTCGAATAAATCGAAT
71412766 A
1 A
71412767 TAAACAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.27
Consensus pattern (18 bp):
AATTCGAATAAATCGAAT
Found at i:71429354 original size:29 final size:28
Alignment explanation
Indices: 71429319--71429396 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
71429309 TCATGAGATT
71429319 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
71429349 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
71429376 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
71429397 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:71429664 original size:173 final size:174
Alignment explanation
Indices: 71429349--71429675 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
71429339 AAATTGTACA
* *
71429349 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
71429414 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
71429479 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
71429523 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
71429588 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
71429652 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
71429676 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:71436247 original size:49 final size:50
Alignment explanation
Indices: 71436178--71436410 Score: 263
Period size: 49 Copynumber: 4.7 Consensus size: 50
71436168 ATCTATTGTA
* *
71436178 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
71436228 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
71436278 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
71436328 AGGTCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
71436378 -GGTCGCATGTGAAATACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
71436411 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 71 0.47
50 44 0.29
51 37 0.24
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:71438327 original size:12 final size:12
Alignment explanation
Indices: 71438310--71438338 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
71438300 GTACTCAAAG
71438310 AAACGATCACAA
1 AAACGATCACAA
71438322 AAACGATCACAA
1 AAACGATCACAA
71438334 AAACG
1 AAACG
71438339 TATAAATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.24, G:0.10, T:0.07
Consensus pattern (12 bp):
AAACGATCACAA
Found at i:71439547 original size:42 final size:42
Alignment explanation
Indices: 71439432--71439586 Score: 181
Period size: 42 Copynumber: 3.7 Consensus size: 42
71439422 TACCATACCA
* * *
71439432 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATACCAGATATGGTCTTACACGAAG-TCTCGTATCG
71439474 ATGCCA-ATAGCCCA-ACTATGGTCTTACACGAAGTCTCGTATCG
1 ATGCCATATA--CCAGA-TATGGTCTTACACGAAGTCTCGTATCG
* *
71439517 ATGCCATATACCAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATACCAGATATGGTCTTACACGAAGTCTCGTATCG
* * *
71439559 ATGTCATATCCCAGATATGATCTTACAC
1 ATGCCATATACCAGATATGGTCTTACAC
71439587 ATAGTCTTAG
Statistics
Matches: 99, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.02
42 60 0.61
43 33 0.33
44 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATATACCAGATATGGTCTTACACGAAGTCTCGTATCG
Found at i:71445783 original size:30 final size:30
Alignment explanation
Indices: 71445749--71445809 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71445739 TTCCCGAGCC
71445749 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
71445779 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
71445809 T
1 T
71445810 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:71446592 original size:68 final size:67
Alignment explanation
Indices: 71446520--71446669 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
71446510 CATCATGTGT
* * * *
71446520 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
71446582 ATGTAG
62 ATGTAG
** * *
71446588 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
71446653 AG
66 AG
71446655 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
71446670 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:71446625 original size:64 final size:64
Alignment explanation
Indices: 71446544--71446727 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
71446534 AGACATTATG
* *
71446544 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71446608 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71446673 AA
63 AA
* * * *
71446675 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
71446728 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71454294 original size:40 final size:39
Alignment explanation
Indices: 71454239--71454412 Score: 181
Period size: 40 Copynumber: 4.4 Consensus size: 39
71454229 TGATAACCGA
* * *
71454239 GCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCGG
*
71454279 GCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCCGG
*
71454319 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCGG
* * * * *
71454359 GATATGTCCTGAAGGCATTCGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-TCCGG
* *
71454398 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
71454413 TACCTGGCTT
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.13
40 99 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCCGG
Found at i:71454373 original size:80 final size:79
Alignment explanation
Indices: 71454239--71454412 Score: 208
Period size: 80 Copynumber: 2.2 Consensus size: 79
71454229 TGATAACCGA
* ** * *
71454239 GCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTA-C
1 GCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGATAAGTCCCGAAGGCATTCG-AGC
71454303 GAGTTA-CTATATCCGG
65 GAG-TAGCTATATCC-G
* * * *
71454319 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGATATGTCCTGAAGGCATTCGAGCG
1 GCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGATAAGTCCCGAAGGCATTCGAGCG
71454384 AGTAGCTATATCCG
66 AGTAGCTATATCCG
* *
71454398 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
71454413 TACCTGGCTT
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 17 0.21
80 64 0.79
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGATAAGTCCCGAAGGCATTCGAGCG
AGTAGCTATATCCG
Found at i:71462329 original size:40 final size:39
Alignment explanation
Indices: 71462274--71462447 Score: 190
Period size: 40 Copynumber: 4.4 Consensus size: 39
71462264 TGATAACCGA
* * *
71462274 GCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCGG
71462314 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCCGG
*
71462354 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCGG
* * * * *
71462394 GATATGTCCTGAAGGCATTCGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-TCCGG
* *
71462433 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
71462448 TACCTGGCTT
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
39 15 0.13
40 101 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCCGG
Found at i:71462408 original size:80 final size:79
Alignment explanation
Indices: 71462274--71462447 Score: 215
Period size: 80 Copynumber: 2.2 Consensus size: 79
71462264 TGATAACCGA
* ** * * *
71462274 GCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGATAAGTCCCGAAGGCATTCGAGCG
71462339 AGTTA-CTATATCCGG
66 AG-TAGCTATATCC-G
* * * *
71462354 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGATATGTCCTGAAGGCATTCGAGCG
1 GCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGATAAGTCCCGAAGGCATTCGAGCG
71462419 AGTAGCTATATCCG
66 AGTAGCTATATCCG
* *
71462433 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
71462448 TACCTGGCTT
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 16 0.20
80 65 0.80
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCATTTGCGCGAGTGACTACATCCGGGATAAGTCCCGAAGGCATTCGAGCG
AGTAGCTATATCCG
Found at i:71483371 original size:34 final size:34
Alignment explanation
Indices: 71483333--71483400 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
71483323 TGTTTTTGAG
*
71483333 ATTGTCAGATTATATGATGTGCTAGTTTCTGCTA
1 ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
71483367 ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
1 ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
71483401 TGTCTGATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (34 bp):
ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
Found at i:71486960 original size:40 final size:40
Alignment explanation
Indices: 71486916--71487183 Score: 441
Period size: 40 Copynumber: 6.7 Consensus size: 40
71486906 GCTACTTGCT
71486916 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
71486956 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
71486996 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71487036 CAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71487076 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
71487116 CAAATGCCTTCGGG-CTTAGCCTGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
71487155 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
71487184 CATCCGAATA
Statistics
Matches: 212, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
38 1 0.00
39 33 0.16
40 177 0.83
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:71492877 original size:21 final size:20
Alignment explanation
Indices: 71492826--71492878 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
71492816 TTGGTCTAAG
* *
71492826 GGACACGCCCGTGTGACGCT
1 GGACACGCCCGTGTCACCCT
*
71492846 GGAGCATGCCCGTGTCACCCT
1 GGA-CACGCCCGTGTCACCCT
71492867 AGGACACGCCCG
1 -GGACACGCCCG
71492879 CGCTATAGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 3 0.11
21 21 0.78
22 3 0.11
ACGTcount: A:0.17, C:0.38, G:0.32, T:0.13
Consensus pattern (20 bp):
GGACACGCCCGTGTCACCCT
Found at i:71496169 original size:49 final size:49
Alignment explanation
Indices: 71496113--71496344 Score: 302
Period size: 49 Copynumber: 4.7 Consensus size: 49
71496103 CTGGTATGCA
*
71496113 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
71496162 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * * *
71496212 TAGTAGCATGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
71496263 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
71496312 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
71496345 TCACAATAGA
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 72 0.46
50 47 0.30
51 37 0.24
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:71496282 original size:101 final size:98
Alignment explanation
Indices: 71496113--71496344 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
71496103 CTGGTATGCA
* * *
71496113 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
* * *
71496178 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACAATCCGATACACG
* * * *
71496212 TAGTAGCATGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* * *
71496277 TAGTACTACACATGCGACCAATAATCCGGTACACG
64 TAGTACTACACACGCGACCAACAATCCGATACACG
71496312 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
71496345 TCACAATAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 29 0.25
100 45 0.39
101 42 0.36
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCCGATACACG
Found at i:71496621 original size:27 final size:27
Alignment explanation
Indices: 71496591--71496644 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
71496581 TCATACAACC
* *
71496591 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
71496618 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
71496645 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:71499943 original size:29 final size:29
Alignment explanation
Indices: 71499896--71499953 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
71499886 TATCTTCTAT
* *
71499896 TAGGAATAGCATTTTGATATGATAATAAA
1 TAGGAATAACATTTCGATATGATAATAAA
*
71499925 TAGGAATAACGTTTCGATATGATAATAAA
1 TAGGAATAACATTTCGATATGATAATAAA
71499954 AATGGGTTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.33
Consensus pattern (29 bp):
TAGGAATAACATTTCGATATGATAATAAA
Found at i:71512623 original size:46 final size:46
Alignment explanation
Indices: 71512556--71512730 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
71512546 TGTAACCCGC
* *
71512556 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
71512602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCTGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GGC-ATTTGCAT
* * * * *
71512652 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
71512695 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
71512731 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 62 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:71512671 original size:93 final size:93
Alignment explanation
Indices: 71512564--71512734 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
71512554 GCCCATAAGT
* * *
71512564 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71512629 CGAGTTCTGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
71512657 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71512722 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71512735 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:71513191 original size:30 final size:30
Alignment explanation
Indices: 71513157--71513216 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
71513147 ATTTAATACG
71513157 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
71513187 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
71513217 GGCTCGGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:71520206 original size:46 final size:46
Alignment explanation
Indices: 71520139--71520310 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
71520129 TGTAACCCGC
*
71520139 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
71520185 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
71520235 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
71520278 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
71520311 GGATGCTCAA
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:71520254 original size:93 final size:92
Alignment explanation
Indices: 71520147--71520316 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
71520137 GCCCATAAGT
* *
71520147 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71520212 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTT-GGATGCCTAGTTACATTTCAC
*
71520240 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71520305 CGAGTTGGATGC
66 CGAGTTGGATGC
71520317 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 6 0.08
93 68 0.92
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTGGATGCCTAGTTACATTTCAC
Found at i:71522043 original size:20 final size:20
Alignment explanation
Indices: 71522014--71522058 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
71522004 AGCACATGTA
* *
71522014 TTCATAAAATTTTATAATTT
1 TTCATAAAATTTTACAACTT
*
71522034 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
71522054 TTCAT
1 TTCAT
71522059 TTAGTCCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:71525744 original size:26 final size:26
Alignment explanation
Indices: 71525694--71525744 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
71525684 ATTTCCCTTT
*
71525694 TCTTTTTCTTTCCTTCTTTCTTTCTC
1 TCTTTTTCTTTCCTTCTTTCGTTCTC
*
71525720 TCTTTTTCGTTTCTTTCTTT-GTTCT
1 TCTTTTTC-TTTCCTTCTTTCGTTCT
71525745 TATTCTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.00, C:0.25, G:0.04, T:0.71
Consensus pattern (26 bp):
TCTTTTTCTTTCCTTCTTTCGTTCTC
Found at i:71525778 original size:20 final size:23
Alignment explanation
Indices: 71525753--71525796 Score: 67
Period size: 20 Copynumber: 2.0 Consensus size: 23
71525743 CTTATTCTTT
71525753 TGTTTTATT-TATT-TATT-TTA
1 TGTTTTATTATATTATATTATTA
71525773 TGTTTTATTATATTATATTATTA
1 TGTTTTATTATATTATATTATTA
71525796 T
1 T
71525797 AACTTCTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 4 0.19
23 4 0.19
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (23 bp):
TGTTTTATTATATTATATTATTA
Found at i:71531542 original size:15 final size:16
Alignment explanation
Indices: 71531522--71531551 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
71531512 ATAATAACAA
71531522 TACTTACC-TTTATAC
1 TACTTACCATTTATAC
71531537 TACTTACCATTTATA
1 TACTTACCATTTATA
71531552 TATAATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (16 bp):
TACTTACCATTTATAC
Found at i:71532214 original size:17 final size:19
Alignment explanation
Indices: 71532156--71532207 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
71532146 CCCTTTTCTT
*
71532156 TTTCTTTCT-T-TCCTTC-
1 TTTCTTTCTCTCTTCTTCA
*
71532172 TTTCTTTCTCTCTTTTTCA
1 TTTCTTTCTCTCTTCTTCA
*
71532191 TTTCTTTCTCTGTTCTT
1 TTTCTTTCTCTCTTCTT
71532208 ATTCTTTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 9 0.31
17 1 0.03
18 4 0.14
19 15 0.52
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTCTTTCTCTCTTCTTCA
Found at i:71532259 original size:8 final size:8
Alignment explanation
Indices: 71532248--71532280 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
71532238 TTTTATTATG
71532248 TTATATTA
1 TTATATTA
71532256 TTATATTA
1 TTATATTA
*
71532264 ATATATTA
1 TTATATTA
71532272 TTATATTA
1 TTATATTA
71532280 T
1 T
71532281 ATACTTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATATTA
Found at i:71532281 original size:13 final size:13
Alignment explanation
Indices: 71532240--71532282 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
71532230 ATTTTATGTT
*
71532240 TTATTATGTTATA
1 TTATTATATTATA
71532253 TTATTATATTAATATA
1 TTATTATA-T--TATA
71532269 TTATTATATTATA
1 TTATTATATTATA
71532282 T
1 T
71532283 ACTTAAGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 12 0.46
14 1 0.04
15 1 0.04
16 12 0.46
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:71546431 original size:42 final size:43
Alignment explanation
Indices: 71546323--71546487 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 43
71546313 AGCTCATACA
* * *
71546323 ATGCCAAC-GTCCCATACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAAACATGGTCTTACATGAAATCAAATATCG
* * *
71546366 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATTAAATAT-G
1 ATGCCACTGTCCCAAACATGGTCTTACATGAAATCAAATATCG
* * *
71546408 ATGCTGA-TGTCCCAAACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGC-CACTGTCCCAAACATGGTCTTACATG-AAATCA-AATATCG
* * * *
71546452 ATGCCAGC-GTCCTAGACGTGGTCTTACACGAAATCA
1 ATGCCA-CTGTCCCAAACATGGTCTTACATGAAATCA
71546488 CATAACAAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
42 27 0.27
43 47 0.47
44 26 0.26
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCACTGTCCCAAACATGGTCTTACATGAAATCAAATATCG
Found at i:71548198 original size:7 final size:7
Alignment explanation
Indices: 71548186--71548212 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
71548176 GGGAATTAGG
71548186 GATTTGA
1 GATTTGA
71548193 GATTTGA
1 GATTTGA
71548200 GATTTGA
1 GATTTGA
71548207 GATTTG
1 GATTTG
71548213 TGGATTAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (7 bp):
GATTTGA
Found at i:71548402 original size:21 final size:20
Alignment explanation
Indices: 71548353--71548403 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
71548343 TACATGGCCT
71548353 TGTCACAC-GGCTGTACCCC
1 TGTCACACGGGCTGTACCCC
* *
71548372 TGCGCTACACGGGCATGTACCTC
1 TG-TC-ACACGGGC-TGTACCCC
71548395 TGTCACACG
1 TGTCACACG
71548404 ACCATGTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 2 0.08
20 1 0.04
21 9 0.36
22 4 0.16
23 9 0.36
ACGTcount: A:0.18, C:0.37, G:0.24, T:0.22
Consensus pattern (20 bp):
TGTCACACGGGCTGTACCCC
Found at i:71548762 original size:14 final size:14
Alignment explanation
Indices: 71548745--71548775 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
71548735 ATACATCCAG
71548745 ATACATACATCTGC
1 ATACATACATCTGC
*
71548759 ATACATTCATCTGC
1 ATACATACATCTGC
71548773 ATA
1 ATA
71548776 TAAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (14 bp):
ATACATACATCTGC
Found at i:71552034 original size:21 final size:21
Alignment explanation
Indices: 71552010--71552086 Score: 129
Period size: 21 Copynumber: 3.7 Consensus size: 21
71552000 GCCACTGCGC
* *
71552010 CACACAGGCGTTTGCCTCTGT
1 CACACGGGCGTGTGCCTCTGT
71552031 CACACGGGCGTGTGCCTCTGT
1 CACACGGGCGTGTGCCTCTGT
71552052 CACACGGGCGTGTGCCTCTGT
1 CACACGGGCGTGTGCCTCTGT
71552073 CACAC-GGCGTGTGC
1 CACACGGGCGTGTGC
71552087 TACCCTTTAC
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
20 9 0.17
21 45 0.83
ACGTcount: A:0.12, C:0.34, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTGCCTCTGT
Found at i:71555563 original size:14 final size:14
Alignment explanation
Indices: 71555546--71555583 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
71555536 TGAATTGGTG
*
71555546 CATCTGCATTCATA
1 CATCTGCATACATA
*
71555560 CATCCGCATACATA
1 CATCTGCATACATA
71555574 CATCTGCATA
1 CATCTGCATA
71555584 TAAAGTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.29
Consensus pattern (14 bp):
CATCTGCATACATA
Found at i:71559150 original size:24 final size:23
Alignment explanation
Indices: 71559107--71559201 Score: 72
Period size: 25 Copynumber: 4.0 Consensus size: 23
71559097 TGGCCCTTAA
*
71559107 TCTTTGTATTTTTTATTTTTATT
1 TCTTTGTATTTATTATTTTTATT
71559130 TCTTTGTTATTCTATTA-TTTTATTT
1 TCTTTG-TATT-TATTATTTTTA-TT
*
71559155 TATTTAGTAATATTATTATTTTTA-T
1 TCTTT-GT-AT-TTATTATTTTTATT
* *
71559180 TATTTCT-TTTATTA-TTTTATT
1 TCTTTGTATTTATTATTTTTATT
71559201 T
1 T
71559202 TTAGCCCCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
20 5 0.08
21 8 0.13
22 1 0.02
23 6 0.10
24 10 0.16
25 17 0.28
26 8 0.13
27 6 0.10
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.73
Consensus pattern (23 bp):
TCTTTGTATTTATTATTTTTATT
Found at i:71559283 original size:23 final size:21
Alignment explanation
Indices: 71559234--71559284 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
71559224 TATTTTGATC
*
71559234 ATTATTTTTATTGTTTTTTGTT
1 ATTA-TTTTATTATTTTTTGTT
71559256 ATTATTTTATTATTATTCTTGTT
1 ATTATTTTATTATT-TT-TTGTT
*
71559279 TTTATT
1 ATTATT
71559285 ACCAACCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 9 0.36
22 6 0.24
23 10 0.40
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.75
Consensus pattern (21 bp):
ATTATTTTATTATTTTTTGTT
Found at i:71563879 original size:6 final size:6
Alignment explanation
Indices: 71563868--71563926 Score: 118
Period size: 6 Copynumber: 9.8 Consensus size: 6
71563858 AGTTTATTTC
71563868 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
71563916 TTTTAT TTTTA
1 TTTTAT TTTTA
71563927 CTTGTTTTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:71565729 original size:33 final size:32
Alignment explanation
Indices: 71565684--71565759 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 32
71565674 ACACAGTGCA
* *
71565684 TATAGTAACAGTCTAGGCCAAAGCCCTATTTAG
1 TATAGT-ACAGTCTAGGCCAAAGCCCAATTCAG
* *
71565717 TAATAGTACAGTCTGGGCCTAAGCCCAATTCAG
1 T-ATAGTACAGTCTAGGCCAAAGCCCAATTCAG
71565750 TATCAGTACA
1 TAT-AGTACA
71565760 ATGCAGGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 2 0.05
33 30 0.81
34 5 0.14
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (32 bp):
TATAGTACAGTCTAGGCCAAAGCCCAATTCAG
Found at i:71570139 original size:41 final size:41
Alignment explanation
Indices: 71570062--71570139 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71570052 TTAGTATCTC
* * *
71570062 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71570103 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71570140 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71577462 original size:39 final size:40
Alignment explanation
Indices: 71577419--71577588 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
71577409 TCCTCGTTCA
* * * *
71577419 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
71577458 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
71577498 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
** * * *
71577538 AATGCCTTCGGGATTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
71577578 AAGGCCTTCGG
1 AATGCCTTCGG
71577589 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 35 0.29
40 85 0.71
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:71577517 original size:40 final size:39
Alignment explanation
Indices: 71577419--71577641 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
71577409 TCCTCGTTCA
* * * * *
71577419 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
71577458 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
71577497 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
71577537 GAATGCCTTCGGGATTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
71577577 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
71577618 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
71577642 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 38 0.24
40 114 0.71
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:71577601 original size:80 final size:79
Alignment explanation
Indices: 71577384--71577641 Score: 252
Period size: 80 Copynumber: 3.3 Consensus size: 79
71577374 AAATCACGTA
* * ** * *
71577384 CCTTCGGGATTTAA-CCGGATATAGCT-CCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTA
1 CCTTCGGGATTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
*
71577447 GTAACTCACACAATG
65 ATAACTCACACAATG
** * * *
71577462 CCTTCGGGACATAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAA
1 CCTTCGGGATTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAA
*
71577527 TAACTCGCACGAATG
66 TAACTCACAC-AATG
* * * *
71577542 CCTTCGGGATTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATA
1 CCTTCGGGATTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTA
* * * *
71577606 TTCACTTAGCACAAAG
65 ATAACTCA-CACAATG
* *
71577622 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGATTTAACCCGGA
71577642 CAGCATTCAA
Statistics
Matches: 146, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
78 13 0.09
79 50 0.34
80 80 0.55
81 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGATTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAA
TAACTCACACAATG
Found at i:71577650 original size:41 final size:41
Alignment explanation
Indices: 71577573--71577650 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71577563 TTAGTATCTC
* * *
71577573 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71577614 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71577651 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71579662 original size:37 final size:37
Alignment explanation
Indices: 71579586--71579688 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 37
71579576 TTTGAGTACG
* ** *
71579586 TGTAAGACCATAGCTGGGCTATGGCATCATAATGACA
1 TGTAAGACCATAGTTGGGCTATGGCATTGTAATCACA
* *
71579623 TGTAAGACCATAGTTGGGCTATGGCATTGTTATCCCA
1 TGTAAGACCATAGTTGGGCTATGGCATTGTAATCACA
71579660 TGTAAGACCAT-GTCTGGGAC-ATGGCATTG
1 TGTAAGACCATAGT-TGGG-CTATGGCATTG
71579689 GCATTGATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
36 2 0.03
37 55 0.95
38 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (37 bp):
TGTAAGACCATAGTTGGGCTATGGCATTGTAATCACA
Found at i:71579709 original size:48 final size:48
Alignment explanation
Indices: 71579654--71579877 Score: 351
Period size: 48 Copynumber: 4.7 Consensus size: 48
71579644 TGGCATTGTT
*
71579654 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
*
71579702 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAAATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
*
71579750 ATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* * *
71579798 ATCCCATGTAAGACCATATCCGGGAAATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
** * *
71579846 ATTTCGTGTAAGACCAT-TTTGGGACATGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCAT
71579878 CAATATGAGA
Statistics
Matches: 162, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
47 12 0.07
48 150 0.93
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
Found at i:71579893 original size:41 final size:42
Alignment explanation
Indices: 71579831--71579922 Score: 125
Period size: 41 Copynumber: 2.2 Consensus size: 42
71579821 GAAATGGCAT
* * * *
71579831 TGGCATCGATATGTGATTTCGTGTAAGACCAT-TTTGGGAC-A
1 TGGCATCAATATGAGACTTCGTGTAAGACCATAGTT-GGACTA
71579872 TGGCATCAATATGAGACTTCGTGTAAGACCATAGTTGGACTA
1 TGGCATCAATATGAGACTTCGTGTAAGACCATAGTTGGACTA
71579914 TGGCATCAA
1 TGGCATCAA
71579923 GTAAACGACG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
41 33 0.73
42 12 0.27
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGGCATCAATATGAGACTTCGTGTAAGACCATAGTTGGACTA
Found at i:71583624 original size:13 final size:13
Alignment explanation
Indices: 71583591--71583629 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
71583581 TTTTGGGATG
71583591 AATTGATTAATAT
1 AATTGATTAATAT
71583604 AA-TGATTAATAT
1 AATTGATTAATAT
71583616 AATTGATTAATAT
1 AATTGATTAATAT
71583629 A
1 A
71583630 TATATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
AATTGATTAATAT
Found at i:71584451 original size:27 final size:27
Alignment explanation
Indices: 71584380--71584471 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
71584370 TGGATAAGTT
*
71584380 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCTAAATACCCCTGTAGG
* *
71584407 GTAGAAAT-CCTGAAATACCCCTGTAAG
1 GTAGAATTACCT-AAATACCCCTGTAGG
* * *
71584434 GTAGAATTACCTAGATACCCTTGTGGG
1 GTAGAATTACCTAAATACCCCTGTAGG
*
71584461 GTAAAATTACC
1 GTAGAATTACC
71584472 ATTTTGCCCC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.04
27 49 0.91
28 3 0.06
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCTAAATACCCCTGTAGG
Found at i:71585265 original size:27 final size:26
Alignment explanation
Indices: 71585213--71585272 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71585203 ACATATATAT
*
71585213 ATATCTGTTCTAGTGGCCTAGCCACA
1 ATATCTGTTCTAGTGACCTAGCCACA
* * *
71585239 ATATCTGTATCTAGTGACTTCGTCACA
1 ATATCTGT-TCTAGTGACCTAGCCACA
71585266 ATATCTG
1 ATATCTG
71585273 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTAGTGACCTAGCCACA
Found at i:71591905 original size:40 final size:40
Alignment explanation
Indices: 71591858--71592022 Score: 235
Period size: 40 Copynumber: 4.1 Consensus size: 40
71591848 CGGGCTTTAA
* *
71591858 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
71591898 CCGGATATAGT-AGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTCA-CTCGCACAAATGCCTTCGGGACTTAGC
*
71591938 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
71591978 CCGGA-ATTAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
71592018 CCGGA
1 CCGGA
71592023 ATTATTATCC
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.02
40 110 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71594810 original size:27 final size:27
Alignment explanation
Indices: 71594776--71594921 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
71594766 TGGATAAGTT
*
71594776 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
71594803 GTAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
71594830 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
71594857 GTAGAAAT-CTCGAAATACCCCTGTAAG
1 GTAGAATTAC-CGAAATACCCCTGTAGG
* * * *
71594884 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
71594911 GTAAAATTACC
1 GTAGAATTACC
71594922 AGTTTGCCCC
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.99
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:71605163 original size:18 final size:17
Alignment explanation
Indices: 71605132--71605165 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
71605122 ATTACGAAAG
*
71605132 TTTAAAAAATTAAAATT
1 TTTAAAAAACTAAAATT
71605149 TTTAAAAAACCTAAAAT
1 TTTAAAAAA-CTAAAAT
71605166 GTTATATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTAAAAAACTAAAATT
Found at i:71605321 original size:27 final size:26
Alignment explanation
Indices: 71605278--71605360 Score: 62
Period size: 27 Copynumber: 3.1 Consensus size: 26
71605268 CGTGGTTCAA
* *
71605278 AAAATTATAAA-ACTTATTGAAAATAT
1 AAAATT-TAAATAATTATTAAAAATAT
*
71605304 AAAATTGTAAATAATTATAAAAAAT-T
1 AAAATT-TAAATAATTATTAAAAATAT
* *
71605330 AAGTAATTTTAATAATTATTTAAAATTAT
1 AA--AATTTAAATAATTA-TTAAAAATAT
71605359 AA
1 AA
71605361 TATTATATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 13 0.29
27 19 0.42
28 10 0.22
29 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.39
Consensus pattern (26 bp):
AAAATTTAAATAATTATTAAAAATAT
Found at i:71605371 original size:18 final size:19
Alignment explanation
Indices: 71605334--71605378 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
71605324 AAAATTAAGT
* *
71605334 AATTTTAATAATTATTTAA
1 AATTATAATAATTATATAA
71605353 AATTATAAT-ATTATATAA
1 AATTATAATAATTATATAA
*
71605371 AAATATAA
1 AATTATAA
71605379 AATATCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATTATAATAATTATATAA
Found at i:71605766 original size:21 final size:21
Alignment explanation
Indices: 71605710--71605783 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
71605700 AATTTTATTT
* *
71605710 TTTTTAAGA-TTTTTAAAAAA
1 TTTTTAATATTTTTTAAATAA
* * *
71605730 GTATTAA-ATATTTT-AATAA
1 TTTTTAATATTTTTTAAATAA
*
71605749 CTTTTTACTATTTTTTAAATAA
1 -TTTTTAATATTTTTTAAATAA
71605771 TTTTTAATATTTT
1 TTTTTAATATTTT
71605784 GAATGACATT
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
19 5 0.12
20 13 0.32
21 18 0.44
22 5 0.12
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTTTAATATTTTTTAAATAA
Found at i:71611466 original size:20 final size:22
Alignment explanation
Indices: 71611441--71611480 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
71611431 AAGAGTTTTC
71611441 AAAATACA-T-AAATAAAATTT
1 AAAATACATTAAAATAAAATTT
*
71611461 AAAATATATTAAAATAAAAT
1 AAAATACATTAAAATAAAAT
71611481 ATTTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 1 0.06
22 9 0.53
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAATACATTAAAATAAAATTT
Found at i:71611480 original size:15 final size:15
Alignment explanation
Indices: 71611460--71611493 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
71611450 AAATAAAATT
71611460 TAAAATATATTA-AAA
1 TAAAATAT-TTATAAA
71611475 TAAAATATTTATAAA
1 TAAAATATTTATAAA
71611490 TAAA
1 TAAA
71611494 TAAATTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TAAAATATTTATAAA
Found at i:71616378 original size:8 final size:8
Alignment explanation
Indices: 71616365--71616392 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
71616355 AACGTTATAG
71616365 TTATTTTA
1 TTATTTTA
71616373 TTATTTTA
1 TTATTTTA
71616381 TTATTTTA
1 TTATTTTA
71616389 TTAT
1 TTAT
71616393 GCTTTCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTATTTTA
Found at i:71622955 original size:48 final size:48
Alignment explanation
Indices: 71622868--71623153 Score: 276
Period size: 48 Copynumber: 6.0 Consensus size: 48
71622858 GACATTTGGG
* * * * *
71622868 TGATATGTGTGCCAGTATAAGACTATGTTTGGGATATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * * *
71622916 CGATAAGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAA
1 TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * * *
71622964 TG-TAATGAGAGCTAGTGTAAGACAATGTTTGGGACATGGCATC-GACA
1 TGAT-ATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* *
71623011 TTGATATGTGCGCTC-GTGTAAGACTATGTTTGGAACATGGCATCGG-CA
1 -TGATATGAGAGC-CAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * * * **
71623059 TTGAGATGAGAGCTAGTGTAAGACTATGTCTGGGACATGGCATCAACC-
1 -TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * *
71623107 TCGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 T-GATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGC
71623154 AATTCACCCC
Statistics
Matches: 193, Mismatches: 37, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
47 4 0.02
48 186 0.96
49 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
Found at i:71623049 original size:96 final size:96
Alignment explanation
Indices: 71622924--71623156 Score: 353
Period size: 96 Copynumber: 2.4 Consensus size: 96
71622914 CACGATAAGA
71622924 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTA-ATGAGAGCTAGTGTAAGACA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATG-AGATGAGAGCTAGTGTAAGACA
* * * *
71622988 ATGTTTGGGACATGGCATCGACATTGATATGT
65 ATGTCTGGGACATGGCATCAACATCGACATGT
* * * *
71623020 GCGCTC-GTGTAAGACTATGTTTGGAACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACT
1 GAGC-CAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGAGATGAGAGCTAGTGTAAGACA
*
71623084 ATGTCTGGGACATGGCATCAACCTCGACATGT
65 ATGTCTGGGACATGGCATCAACATCGACATGT
71623116 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT
71623157 TCACCCCTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
95 2 0.02
96 119 0.98
97 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGAGATGAGAGCTAGTGTAAGACAA
TGTCTGGGACATGGCATCAACATCGACATGT
Found at i:71623128 original size:144 final size:144
Alignment explanation
Indices: 71622868--71623151 Score: 342
Period size: 144 Copynumber: 2.0 Consensus size: 144
71622858 GACATTTGGG
* * * *
71622868 TGATATGTGTGCCAGTATAAGACTATGTTTGGGATATGGCATCGGCCACGATAAGAGAGCCAGTG
1 TGATATGTGCGCCAGTATAAGACTATGTTTGGAACATGGCATCGGCCACGAGAAGAGAGCCAGTG
* ** * *
71622933 TAAGACCATGTTTGGAACATGGCATCGGCAATGTAATGAGAGCTAGTGTAAGACAATGTTTGGGA
66 TAAGACCATGTCTGGAACATGGCATCAACAATGTAATGAGAGCCAGTGTAAGACAATGTTTGGAA
71622998 CATGGCATCGACAT
131 CATGGCATCGACAT
* * * *
71623012 TGATATGTGCGCTC-GTGTAAGACTATGTTTGGAACATGGCATCGG-CATTGAGATGAGAGCTAG
1 TGATATGTGCGC-CAGTATAAGACTATGTTTGGAACATGGCATCGGCCA-CGAGAAGAGAGCCAG
* * * * *
71623075 TGTAAGACTATGTCTGGGACATGGCATCAAC-CTCG-ACATGTGAGCCAGTGTAAGACCATGTTT
64 TGTAAGACCATGTCTGGAACATGGCATCAACAAT-GTA-ATGAGAGCCAGTGTAAGACAATGTTT
71623138 GGAACATGGCATCG
127 GGAACATGGCATCG
71623152 GCAATTCACC
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
143 4 0.03
144 113 0.96
145 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCCAGTATAAGACTATGTTTGGAACATGGCATCGGCCACGAGAAGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCAACAATGTAATGAGAGCCAGTGTAAGACAATGTTTGGAA
CATGGCATCGACAT
Found at i:71626140 original size:35 final size:35
Alignment explanation
Indices: 71626100--71626170 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
71626090 AGTACGAATA
*
71626100 TACTAGTGGAGTCTACTGAATTTTTGGTAAAAGTG
1 TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
71626135 TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
1 TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
71626170 T
1 T
71626171 CCAACTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.37
Consensus pattern (35 bp):
TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
Found at i:71630512 original size:40 final size:40
Alignment explanation
Indices: 71630457--71630681 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
71630447 TATTCGGATG
71630457 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
71630497 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
71630540 ATACCCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
71630580 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * * *
71630620 ATATCCGGGTTAAGTCCCGACGGTATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
71630660 ATATCC-GGCTGAA-TCCCGAAGG
1 ATATCCGGGCT-AAGTCCCGAAGG
71630682 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 11 0.07
40 110 0.70
41 1 0.01
43 36 0.23
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:71630600 original size:83 final size:83
Alignment explanation
Indices: 71630461--71630615 Score: 256
Period size: 83 Copynumber: 1.9 Consensus size: 83
71630451 CGGATGATAT
* * * *
71630461 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
71630526 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
* *
71630544 CCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
71630609 TGCGAGT
66 TGCGAGT
71630616 TACTATATCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (83 bp):
CCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TGCGAGTAGTTGCTATAC
Found at i:71635931 original size:47 final size:47
Alignment explanation
Indices: 71635786--71636164 Score: 571
Period size: 47 Copynumber: 8.1 Consensus size: 47
71635776 CCCTTCGGGA
* * * * * * *
71635786 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71635833 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71635879 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71635926 CTTATCACCTATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71635973 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71636020 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71636067 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71636114 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71636161 CTTA
1 CTTA
71636165 CTATCATTTC
Statistics
Matches: 309, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 40 0.13
47 269 0.87
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71638622 original size:96 final size:96
Alignment explanation
Indices: 71638449--71638698 Score: 285
Period size: 96 Copynumber: 2.6 Consensus size: 96
71638439 TTGGGCTGTC
* * * **
71638449 ACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTTTCAGCATTG
1 ACATGGCATCGGCCATATAATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCATTG
* * *
71638514 ATATGTGCGCTAGTGTAAGACCATGTCTGGG
66 AGATGAGAGCTAGTGTAAGACCATGTCTGGG
* * *
71638545 ACATGGCATTGGCCATATTATGAGAGCCAATGTAA-ACCCATGTCTGGGACATGGCATCTA-TAT
1 ACATGGCATCGGCCATATAATGAGAGCCAATGTAAGA-CCATGTCTGGGACATGGCATC-AGCAT
71638608 TGAGATGAGAGCTAGTGTAAGACCATGTCTGGG
64 TGAGATGAGAGCTAGTGTAAGACCATGTCTGGG
* * * *
71638641 ACATGGCATCGGCC-TCA-ACAT-ATGAGTCAGTGTAAGACCATGTTTGGAACATGGCATC
1 ACATGGCATCGGCCAT-ATA-ATGA-GAGCCAATGTAAGACCATGTCTGGGACATGGCATC
71638699 GACAATTCAC
Statistics
Matches: 131, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
95 3 0.02
96 126 0.96
97 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
ACATGGCATCGGCCATATAATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCATTG
AGATGAGAGCTAGTGTAAGACCATGTCTGGG
Found at i:71638673 original size:48 final size:47
Alignment explanation
Indices: 71638449--71638699 Score: 206
Period size: 48 Copynumber: 5.2 Consensus size: 47
71638439 TTGGGCTGTC
71638449 ACATGGCATCGGCAATGT-A-ATGAGAGCCAGTGTAAGACCATGTCTGGG
1 ACATGGCATCGGC-AT-TAATATGAGAG-CAGTGTAAGACCATGTCTGGG
** * * * *
71638497 ACATGGTTTCAGCATTGATATGTGCGCTAGTGTAAGACCATGTCTGGG
1 ACATGGCATCGGCATTAATATGAGAGC-AGTGTAAGACCATGTCTGGG
* * *
71638545 ACATGGCATTGGCCA-TATTATGAGAGCCAATGTAA-ACCCATGTCTGGG
1 ACATGGCATCGG-CATTAATATGAGAG-CAGTGTAAGA-CCATGTCTGGG
*** * *
71638593 ACATGGCATCTATATTGAGATGAGAGCTAGTGTAAGACCATGTCTGGG
1 ACATGGCATCGGCATTAATATGAGAGC-AGTGTAAGACCATGTCTGGG
* * * * *
71638641 ACATGGCATCGGCCTCAACATATGAG-TCAGTGTAAGACCATGTTTGGA
1 ACATGGCATCGGCAT-TA-ATATGAGAGCAGTGTAAGACCATGTCTGGG
71638689 ACATGGCATCG
1 ACATGGCATCG
71638700 ACAATTCACC
Statistics
Matches: 160, Mismatches: 32, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
46 1 0.01
47 7 0.04
48 141 0.88
49 5 0.03
50 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
ACATGGCATCGGCATTAATATGAGAGCAGTGTAAGACCATGTCTGGG
Found at i:71638967 original size:18 final size:18
Alignment explanation
Indices: 71638944--71638978 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71638934 GTTTATACCT
71638944 GTGATATATAAGCATGTA
1 GTGATATATAAGCATGTA
* *
71638962 GTGATATCTACGCATGT
1 GTGATATATAAGCATGT
71638979 TCACTCAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (18 bp):
GTGATATATAAGCATGTA
Found at i:71640335 original size:27 final size:27
Alignment explanation
Indices: 71640290--71640347 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
71640280 ATTTAAGATG
71640290 TGTCTTAGTTTATTACTTGTGTTTAATA
1 TGTCTTAGTTTATTACTTGT-TTTAATA
*
71640318 TGTCTTAG-TTATTACTTGTTTTAATG
1 TGTCTTAGTTTATTACTTGTTTTAATA
71640344 TGTC
1 TGTC
71640348 CTAGCTGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 10 0.34
27 11 0.38
28 8 0.28
ACGTcount: A:0.19, C:0.09, G:0.16, T:0.57
Consensus pattern (27 bp):
TGTCTTAGTTTATTACTTGTTTTAATA
Found at i:71640903 original size:10 final size:10
Alignment explanation
Indices: 71640872--71640906 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
71640862 CTGGAGAAGC
71640872 TTTCTGGAAT
1 TTTCTGGAAT
*
71640882 TTTCTTGAAAT
1 TTTC-TGGAAT
71640893 TTTCTGGAAT
1 TTTCTGGAAT
71640903 TTTC
1 TTTC
71640907 AGCTCATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (10 bp):
TTTCTGGAAT
Found at i:71645424 original size:26 final size:28
Alignment explanation
Indices: 71645367--71645424 Score: 102
Period size: 26 Copynumber: 2.1 Consensus size: 28
71645357 ATTTAAGATG
71645367 TGTCTTAGTTTATTACTTGTGTTTAATA
1 TGTCTTAGTTTATTACTTGTGTTTAATA
71645395 TGTCTTAG-TTATTACTTGT-TTTAATA
1 TGTCTTAGTTTATTACTTGTGTTTAATA
71645421 TGTC
1 TGTC
71645425 CTAGCTGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 11 0.37
27 11 0.37
28 8 0.27
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.57
Consensus pattern (28 bp):
TGTCTTAGTTTATTACTTGTGTTTAATA
Found at i:71665713 original size:34 final size:34
Alignment explanation
Indices: 71665670--71665737 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
71665660 TACTACTTGA
71665670 TAAATATGAATTGCTACCGAGTATCGGTTCTGAT
1 TAAATATGAATTGCTACCGAGTATCGGTTCTGAT
71665704 TAAATATGAATTGCTACCGAGTATCGGTTCTGAT
1 TAAATATGAATTGCTACCGAGTATCGGTTCTGAT
71665738 ATTCCATGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (34 bp):
TAAATATGAATTGCTACCGAGTATCGGTTCTGAT
Found at i:71665995 original size:93 final size:93
Alignment explanation
Indices: 71665836--71666007 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
71665826 GGATGGTTGA
* * **
71665836 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71665901 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
71665929 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71665994 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71666008 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:71666012 original size:46 final size:46
Alignment explanation
Indices: 71665840--71666014 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
71665830 GGTTGAGCAT
* * *
71665840 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
71665886 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
71665931 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
71665979 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71666015 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 62 0.58
47 26 0.25
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:71668405 original size:8 final size:8
Alignment explanation
Indices: 71668392--71668419 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
71668382 GGGGTTAATT
71668392 TGTGAAAA
1 TGTGAAAA
71668400 TGTGAAAA
1 TGTGAAAA
71668408 TGTGAAAA
1 TGTGAAAA
71668416 TGTG
1 TGTG
71668420 TGGTTAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (8 bp):
TGTGAAAA
Found at i:71669264 original size:21 final size:21
Alignment explanation
Indices: 71669238--71669284 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
71669228 GGTGAGTATG
* *
71669238 TTATAA-ATAATGGCATGTGAA
1 TTATAAGAGAATGGAATGTG-A
71669259 TTATAAGAGAATGGAATGTGA
1 TTATAAGAGAATGGAATGTGA
71669280 TTATA
1 TTATA
71669285 TGCAAGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.34
Consensus pattern (21 bp):
TTATAAGAGAATGGAATGTGA
Found at i:71671625 original size:41 final size:40
Alignment explanation
Indices: 71671522--71671715 Score: 280
Period size: 40 Copynumber: 4.8 Consensus size: 40
71671512 ATAGCAAATC
* * *
71671522 GCACAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
71671562 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* * *
71671602 GCACAAAATGCCTTCGGGTCTTAGCCTGGATATCGTCACTA
1 GCAC-AAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
71671643 GCGCAAATGCCTTCGGCACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
71671683 GCACAAAGTGCCTTCGGGTCTTAGCCCAGATAT
1 GCACAAA-TGCCTTCGGGACTTAGCCCGGATAT
71671716 CATCCGAATA
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
40 79 0.58
41 58 0.42
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:71671716 original size:81 final size:80
Alignment explanation
Indices: 71671522--71671716 Score: 291
Period size: 81 Copynumber: 2.4 Consensus size: 80
71671512 ATAGCAAATC
* * * * *
71671522 GCACAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGGCACTTAGCC
71671587 CGGATATAGTCACTA
66 CGGATATAGTCACTA
* * *
71671602 GCACAAAATGCCTTCGGGTCTTAGCCTGGATATCGTCACTAGCGCAAATGCCTTCGGCACTTAGC
1 GCAC-AAATGCCTTCGGGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGGCACTTAGC
71671667 CCGGATATAGTCACTA
65 CCGGATATAGTCACTA
*
71671683 GCACAAAGTGCCTTCGGGTCTTAGCCCAGATATC
1 GCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
71671717 ATCCGAATAA
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
80 7 0.07
81 96 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGGCACTTAGCC
CGGATATAGTCACTA
Found at i:71673967 original size:80 final size:80
Alignment explanation
Indices: 71673868--71674048 Score: 188
Period size: 80 Copynumber: 2.3 Consensus size: 80
71673858 ACCCAAGTTT
* * * * * *
71673868 CTTCGGAATTTAG-CCGGATATAACCACAAGCA-CAATTGCCTTCGGGTCTTAACCCGGGT-ATA
1 CTTCGGGACTTAGCCCGGATATAACCACAAGCATAAATT-CCTTCGGGACTTAACCCGGATAAAA
*
71673930 GCAACGCGCACAAATGC
65 GC-ACGAGCACAAATGC
* * * * * *
71673947 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATTCCTTCGGGACTTAGCCCGGATAAAAT
1 CTTCGGGACTTAGCCCGGATATAACCACAAGCATAAATTCCTTCGGGACTTAACCCGGATAAAAG
* *
71674012 CACTAGCATAAATGC
66 CACGAGCACAAATGC
71674027 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
71674049 CATTCAAATG
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
79 10 0.12
80 65 0.79
81 7 0.09
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACCACAAGCATAAATTCCTTCGGGACTTAACCCGGATAAAAG
CACGAGCACAAATGC
Found at i:71673990 original size:40 final size:40
Alignment explanation
Indices: 71673941--71674047 Score: 196
Period size: 40 Copynumber: 2.7 Consensus size: 40
71673931 CAACGCGCAC
*
71673941 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
*
71673981 AAATTCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
71674021 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
71674048 TCATTCAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:71682142 original size:39 final size:39
Alignment explanation
Indices: 71682021--71682187 Score: 162
Period size: 40 Copynumber: 4.3 Consensus size: 39
71682011 TCTTCAGAAT
* * * *
71682021 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATA-AATCACTAGCACAAATGCCTTCGGGAC
* * * * * *
71682060 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAATC-ACTAGCACAAATGCCTTCGGGAC
*
71682100 TTAGCCCGGATAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAATCACTAGCACAAATGCCTTCGGGAC
*
71682139 TTAG-CCGGATAAAATCA-TAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGAT-AAATCACTAGCACAAATGCCTTCGGGAC
*
71682176 TTAGCCTGGATA
1 TTAGCCCGGATA
71682188 TCATTCAAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
37 9 0.08
38 27 0.25
39 35 0.32
40 38 0.35
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATAAATCACTAGCACAAATGCCTTCGGGAC
Found at i:71682160 original size:38 final size:39
Alignment explanation
Indices: 71682085--71682187 Score: 158
Period size: 38 Copynumber: 2.7 Consensus size: 39
71682075 CAACTCGCAC
*
71682085 AAATGCCTTCGGGTCTTAGCCCGGAT-AAATCACTAGCAT
1 AAATGCCTTCGGGACTTAG-CCGGATAAAATCACTAGCAT
71682124 AAATGCCTTCGGGACTTAGCCGGATAAAATCA-TAGCAT
1 AAATGCCTTCGGGACTTAGCCGGATAAAATCACTAGCAT
71682162 AAATGCCTTC-GGACTTAGCCTGGATA
1 AAATGCCTTCGGGACTTAGCC-GGATA
71682188 TCATTCAAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
37 10 0.16
38 27 0.44
39 24 0.39
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (39 bp):
AAATGCCTTCGGGACTTAGCCGGATAAAATCACTAGCAT
Found at i:71695913 original size:40 final size:40
Alignment explanation
Indices: 71695851--71696068 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
71695841 AAGCCAAGTA
* * * *
71695851 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
71695890 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
71695930 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
71695970 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
71696010 CCTTTGGGACTTAGCCCAGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
71696050 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
71696069 TTATCATCCA
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 147 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:71697499 original size:49 final size:49
Alignment explanation
Indices: 71697442--71697545 Score: 199
Period size: 49 Copynumber: 2.1 Consensus size: 49
71697432 TCATTAATAT
71697442 AAATATACTCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTAC
1 AAATATACTCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTAC
71697491 AAATATACTCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTAC
1 AAATATACTCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTAC
*
71697540 TAATAT
1 AAATAT
71697546 CCTGACTATA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.36
Consensus pattern (49 bp):
AAATATACTCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTAC
Found at i:71708919 original size:46 final size:46
Alignment explanation
Indices: 71708868--71709078 Score: 140
Period size: 46 Copynumber: 4.5 Consensus size: 46
71708858 CGTAGGCGAC
* *
71708868 GCATGTCCTAGACATGTCTGACATTGGCTAACAT-CTCAAGGCCGAT
1 GCATGTCCTAGACATGTCTGACACTCGCTAACATACT-AAGGCCGAT
* * ** * *
71708914 GCATGTCCTAGGCATGTCTTACACTCGCTTTCATACTATGGCTGAT
1 GCATGTCCTAGACATGTCTGACACTCGCTAACATACTAAGGCCGAT
* * * * * * *
71708960 GCATGTCCCAGACATGTCTTACACTAGC--CCTTGCCTCAATGCCGAT
1 GCATGTCCTAGACATGTCTGACACTCGCTAACAT-ACT-AAGGCCGAT
* * * * * **
71709006 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGAT
1 G-CATGTCCTAGACAT-GTCTGACACTCGCTAACATACTAAGGCCGAT
* *
71709054 GCATGTCCCAGACATGTCTTACACT
1 GCATGTCCTAGACATGTCTGACACT
71709079 GGCACACAAA
Statistics
Matches: 133, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 77 0.58
47 30 0.23
48 19 0.14
49 1 0.01
50 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCATGTCCTAGACATGTCTGACACTCGCTAACATACTAAGGCCGAT
Found at i:71709059 original size:94 final size:92
Alignment explanation
Indices: 71708902--71709078 Score: 264
Period size: 94 Copynumber: 1.9 Consensus size: 92
71708892 TGGCTAACAT
* * * * *
71708902 CTCAAGGCCGATGCATGTCCTAGGCATGTCTTACACTCGCTTTCATACTATGGCTGATGCATGTC
1 CTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTCGCTATCATAATATGGCCGATGCATGTC
71708967 CCAGACATGTCTTACACTAGCCCTTGC
66 CCAGACATGTCTTACACTAGCCCTTGC
* * *
71708994 CTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGATGCATG
1 CTCAAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTCGCTATCATAATATGGCCGATGCATG
71709059 TCCCAGACATGTCTTACACT
64 TCCCAGACATGTCTTACACT
71709079 GGCACACAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
92 12 0.16
93 12 0.16
94 51 0.68
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
CTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTCGCTATCATAATATGGCCGATGCATGTC
CCAGACATGTCTTACACTAGCCCTTGC
Found at i:71733000 original size:40 final size:40
Alignment explanation
Indices: 71732869--71733002 Score: 162
Period size: 40 Copynumber: 3.4 Consensus size: 40
71732859 GTTATTGTGG
* * * *
71732869 CACTTAGTGTGCGATATGACATAGCTTCGACTATATATAA
1 CACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGA
* * *
71732909 CACTTAGTGTGCT-ATTCGACATAGCTTTGGCTATATATGG
1 CACTTAGTGTG-TGATTTGACATAGCTTCGGCTATATATGA
* * *
71732949 CACTTAGTGTGTGATTTGAGATAGCTTCGGCTATGTACGA
1 CACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGA
71732989 CACTTAGTGTGTGA
1 CACTTAGTGTGTGA
71733003 GATATCATGG
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 78 0.99
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (40 bp):
CACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGA
Found at i:71737043 original size:30 final size:30
Alignment explanation
Indices: 71737007--71737067 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
71736997 CATTTAATAC
*
71737007 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
71737037 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
71737067 A
1 A
71737068 GGCTCAGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:71741973 original size:22 final size:22
Alignment explanation
Indices: 71741942--71741984 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
71741932 TTATGAAACT
71741942 TATAGGGGACTCTATCACCACC
1 TATAGGGGACTCTATCACCACC
*
71741964 TATAGTGGACTCTATCACCAC
1 TATAGGGGACTCTATCACCAC
71741985 ACATTAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (22 bp):
TATAGGGGACTCTATCACCACC
Found at i:71742564 original size:18 final size:18
Alignment explanation
Indices: 71742522--71742565 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
71742512 CATTGTTTGG
* *
71742522 CAAATTAATACAATTCGC
1 CAAATTAATACAAATCAC
*
71742540 CATATTAATACAAATCAC
1 CAAATTAATACAAATCAC
71742558 CAAATTAA
1 CAAATTAA
71742566 CACAGTTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.20, G:0.02, T:0.27
Consensus pattern (18 bp):
CAAATTAATACAAATCAC
Found at i:71742565 original size:36 final size:36
Alignment explanation
Indices: 71742522--71742603 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 36
71742512 CATTGTTTGG
* * *
71742522 CAAATTAATACAATTCGCCATATTAATACAAATCAC
1 CAAATTAACACAATTCGCCAAAATAATACAAATCAC
* * * *
71742558 CAAATTAACACAGTTTGCCAAAATAATATAATTCAC
1 CAAATTAACACAATTCGCCAAAATAATACAAATCAC
*
71742594 CAATTTAACA
1 CAAATTAACA
71742604 TGGTTAACAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.48, C:0.21, G:0.04, T:0.28
Consensus pattern (36 bp):
CAAATTAACACAATTCGCCAAAATAATACAAATCAC
Found at i:71747696 original size:41 final size:40
Alignment explanation
Indices: 71747651--71747728 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 40
71747641 TAATCTTGCA
*
71747651 CACTAAGTGCC-TGTCATAGCCGAAGCTATCTCAACCTCACG
1 CACTAAGTGCCATAT-ATAGCCGAA-CTATCTCAACCTCACG
71747692 CACTAAGTGCCATATATAGCCGAACTATCTCAACCTC
1 CACTAAGTGCCATATATAGCCGAACTATCTCAACCTC
71747729 GTACACTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
40 13 0.37
41 20 0.57
42 2 0.06
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.23
Consensus pattern (40 bp):
CACTAAGTGCCATATATAGCCGAACTATCTCAACCTCACG
Found at i:71747736 original size:40 final size:42
Alignment explanation
Indices: 71747649--71747743 Score: 124
Period size: 40 Copynumber: 2.3 Consensus size: 42
71747639 TATAATCTTG
*
71747649 CACACTAAGTGCC-TGTCATAGCCGAAGCTATCTCAACCTCA
1 CACACTAAGTGCCATATCATAGCCGAAGCTATCTCAACCTCA
* *
71747690 CGCACTAAGTGCCATAT-ATAGCCGAA-CTATCTCAACCTCG
1 CACACTAAGTGCCATATCATAGCCGAAGCTATCTCAACCTCA
* *
71747730 TACACTAAATGCCA
1 CACACTAAGTGCCA
71747744 AACATAGTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 24 0.51
41 21 0.45
42 2 0.04
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.22
Consensus pattern (42 bp):
CACACTAAGTGCCATATCATAGCCGAAGCTATCTCAACCTCA
Found at i:71754394 original size:27 final size:26
Alignment explanation
Indices: 71754364--71754446 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
71754354 ATCTCATATC
*
71754364 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGG-TAGAATTACTGAAATACCCT
* *
71754391 TGTAAGGTAGAATTACTGAAATGCCCC
1 TGT-AGGTAGAATTACTGAAATACCCT
**
71754418 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTA-GGTAGAATTACTGAAATACCCT
71754445 TG
1 TG
71754447 GTTTATAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 43 0.91
28 3 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (26 bp):
TGTAGGTAGAATTACTGAAATACCCT
Found at i:71754458 original size:27 final size:27
Alignment explanation
Indices: 71754428--71754623 Score: 198
Period size: 27 Copynumber: 7.3 Consensus size: 27
71754418 TGTAGGGTAG
* *
71754428 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
71754455 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
71754482 AATTTCCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
71754509 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
* **
71754536 AATTACTAAAATACCCTTGACCTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* ** *
71754563 AATTACTAAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * **
71754590 AATTACCAAAGTACCCTCGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
71754617 AATTACC
1 AATTACC
71754624 GTTTTACCCT
Statistics
Matches: 145, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
26 2 0.01
27 139 0.96
28 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:71754459 original size:54 final size:54
Alignment explanation
Indices: 71754409--71754551 Score: 144
Period size: 54 Copynumber: 2.6 Consensus size: 54
71754399 AGAATTACTG
* * * *
71754409 AAATGCCCCT-GTAGGGTAGAATTACCAAAATACCCTTGGTTTATAAAATTACCA
1 AAATACCCCTGGT-GGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
** * *
71754463 AAATACCCCTGGTTTGTAAAATTTCCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTGGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
* * ** * *
71754517 AAATACCTCTGATTTGTGAAATTACTAAAATACCC
1 AAATACCCCTGGTGGGTAAAATTACCAAAATACCC
71754552 TTGACCTGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
54 73 0.97
55 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATACCCCTGGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
Found at i:71754513 original size:81 final size:81
Alignment explanation
Indices: 71754428--71754623 Score: 225
Period size: 81 Copynumber: 2.4 Consensus size: 81
71754418 TGTAGGGTAG
* *** *
71754428 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTTCCAAAA
1 AATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAAA
**
71754493 TACCC-CTAGTTTGTAA
66 TACCCTC-AACTTGTAA
* * * * *
71754509 AATTACCAAAATA-CCTCTGATTTGTGAAATTACTAAAATACCCTTGACCTGTAAAATTACTAAA
1 AATTACCAAAATACCCT-TGATTTATAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAA
71754573 ATACCCTCAACTTGTAA
65 ATACCCTCAACTTGTAA
* * *
71754590 AATTACCAAAGTACCCTCGATTTACAAAATTACC
1 AATTACCAAAATACCCTTGATTTATAAAATTACC
71754624 GTTTTACCCT
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 3 0.03
81 87 0.93
82 4 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTGACCTGTAAAATTACCAAAA
TACCCTCAACTTGTAA
Found at i:71754631 original size:27 final size:27
Alignment explanation
Indices: 71754601--71754874 Score: 341
Period size: 27 Copynumber: 10.1 Consensus size: 27
71754591 ATTACCAAAG
* *
71754601 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
71754628 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
71754655 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
71754682 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
71754709 TACCCTCTATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
71754736 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
71754763 TATCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
71754790 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
71754817 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
71754844 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
71754871 TACC
1 TACC
71754875 TCTAGGGTGT
Statistics
Matches: 217, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Done.