Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 211 of 373
Found at i:71754632 original size:54 final size:54
Alignment explanation
Indices: 71754601--71754874 Score: 404
Period size: 54 Copynumber: 5.1 Consensus size: 54
71754591 ATTACCAAAG
* * *
71754601 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
71754655 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
71754709 TACCCTCTATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
71754763 TATCCTCGATTTATAGAATTATCGTTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * *
71754817 TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
71754871 TACC
1 TACC
71754875 TCTAGGGTGT
Statistics
Matches: 199, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 199 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:71755416 original size:6 final size:6
Alignment explanation
Indices: 71755379--71755478 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
71755369 TTGCATTCAC
* ** *
71755379 ATTCTG ATTTTG ATTCTG -TTACCTG ACACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
71755428 ATTTTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
71755477 AT
1 AT
71755479 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
5 4 0.06
6 62 0.86
7 5 0.07
8 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:71755445 original size:31 final size:31
Alignment explanation
Indices: 71755379--71755465 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 31
71755369 TTGCATTCAC
*
71755379 ATTCTGATTTTGATTCTG-TTACCTGACACTG
1 ATTCTGATTTTGATTCTGATTA-CTGACACTA
* *
71755410 ATTCTGATTTTGATTCTGATT-TTGTCACCTA
1 ATTCTGATTTTGATTCTGATTACTGACA-CTA
*
71755441 ATTCTGATTCTGATTCTGATT-CTGA
1 ATTCTGATTTTGATTCTGATTACTGA
71755466 TTCTAGTTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.08
31 42 0.88
32 2 0.04
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGATTACTGACACTA
Found at i:71764760 original size:41 final size:40
Alignment explanation
Indices: 71764712--71764846 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 40
71764702 TATAATCTCT
71764712 CACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAACCTCA
1 CACACTAAGTGCCTTT-ATAGCCGAAGCTATCTCAACCTCA
* * * * *
71764753 CATACTAAGTGTCATTTATAGCCGAAGTTATTTCAA-CTCG
1 CACACTAAGTG-CCTTTATAGCCGAAGCTATCTCAACCTCA
* * *
71764793 CACACTAAGTGCTCTATATTA-TCGAAGCTATCTCAACCTTA
1 CACACTAAGTGC-CTTTA-TAGCCGAAGCTATCTCAACCTCA
71764834 CACACTAAGTGCC
1 CACACTAAGTGCC
71764847 AAACATAGTC
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 29 0.38
41 43 0.56
42 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (40 bp):
CACACTAAGTGCCTTTATAGCCGAAGCTATCTCAACCTCA
Found at i:71768351 original size:93 final size:93
Alignment explanation
Indices: 71768242--71768412 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
71768232 GCCCATAAGT
* * *
71768242 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGCACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71768307 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
71768335 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71768400 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71768413 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:71768409 original size:46 final size:46
Alignment explanation
Indices: 71768234--71768409 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
71768224 TGTAACCCGC
* * * * *
71768234 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
71768280 CCATAAGTGCACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
71768330 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
71768373 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71768410 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:71768866 original size:30 final size:30
Alignment explanation
Indices: 71768832--71768891 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
71768822 ATTTTATACG
71768832 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
71768862 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
71768892 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:71773272 original size:43 final size:42
Alignment explanation
Indices: 71773175--71773284 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
71773165 CGATTTGAGA
* * *
71773175 TTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTG
1 TTTACGTGTAAGACCATGTCTGGGACAGCAGCATCATATTTG
* *
71773217 TTTTCGTGTAAGACCCTGTCTGGGACAGCAGCATCAATATTT-
1 TTTACGTGTAAGACCATGTCTGGGACAGCAGCATC-ATATTTG
* * *
71773259 TATTACATGTAAGACCACGTCAGGGA
1 T-TTACGTGTAAGACCATGTCTGGGA
71773285 TGTTGGCATT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 32 0.57
43 24 0.43
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TTTACGTGTAAGACCATGTCTGGGACAGCAGCATCATATTTG
Found at i:71775172 original size:111 final size:111
Alignment explanation
Indices: 71774978--71775200 Score: 437
Period size: 111 Copynumber: 2.0 Consensus size: 111
71774968 GATAATAATA
71774978 TCCTTACCTTTTCTCATCTGGGAAATTTCGAAGACAAAATTTTCTTTTAAGAGTAGAGTTGTCAC
1 TCCTTACCTTTTCTCATCTGGGAAATTTCGAAGACAAAATTTTCTTTTAAGAGTAGAGTTGTCAC
*
71775043 ATGCCATTTTTTATGCATGTCCGCAAGAATGAGAACAAAGGGAATG
66 ATGCCATTTTTTATGCATGTCCGCAAGAATAAGAACAAAGGGAATG
71775089 TCCTTACCTTTTCTCATCTGGGAAATTTCGAAGACAAAATTTTCTTTTAAGAGTAGAGTTGTCAC
1 TCCTTACCTTTTCTCATCTGGGAAATTTCGAAGACAAAATTTTCTTTTAAGAGTAGAGTTGTCAC
71775154 ATGCCATTTTTTATGCATGTCCGCAAGAATAAGAACAAAGGGAATG
66 ATGCCATTTTTTATGCATGTCCGCAAGAATAAGAACAAAGGGAATG
71775200 T
1 T
71775201 GTAGTGTAGT
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (111 bp):
TCCTTACCTTTTCTCATCTGGGAAATTTCGAAGACAAAATTTTCTTTTAAGAGTAGAGTTGTCAC
ATGCCATTTTTTATGCATGTCCGCAAGAATAAGAACAAAGGGAATG
Found at i:71785324 original size:40 final size:40
Alignment explanation
Indices: 71785269--71785354 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
71785259 TTATTTGATG
71785269 TGGAATTGTATCCGGGCTTAAAGACCCGCAAGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAAGCTTCGTGC
*
71785309 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAAGCTTCGTGC
71785349 TGGAAT
1 TGGAAT
71785355 GACATCCGGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAAGCTTCGTGC
Found at i:71785380 original size:39 final size:40
Alignment explanation
Indices: 71785269--71785381 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 40
71785259 TTATTTGATG
* *
71785269 TGGAATTGTATCCGGGCTTAAAGACCCGCAAGCTTCGTGC
1 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
71785309 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
71785349 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-CATCCGGGCTTAAAGACCCGCAGGCT
71785382 GTGCTAAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
39 17 0.25
40 51 0.75
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:71793269 original size:19 final size:20
Alignment explanation
Indices: 71793232--71793269 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
71793222 GAATGTAGCC
71793232 AATGTCTACTAATAATGTGA
1 AATGTCTACTAATAATGTGA
71793252 AATGTTCTA-TAA-AATGTG
1 AATG-TCTACTAATAATGTG
71793270 TTAGAATACG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (20 bp):
AATGTCTACTAATAATGTGA
Found at i:71793359 original size:40 final size:40
Alignment explanation
Indices: 71793304--71793416 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
71793294 TTATTTGATG
71793304 TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCGTGC
*
71793344 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCGTGC
* * *
71793384 TGGAA-TGACATCTGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCTGCAGGCT
71793417 ATGCTAAATA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 17 0.25
40 50 0.75
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCGTGC
Found at i:71797548 original size:20 final size:20
Alignment explanation
Indices: 71797519--71797562 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
71797509 AGAACATGTA
* *
71797519 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
71797539 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
71797559 TTCA
1 TTCA
71797563 ATTTAGTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:71800043 original size:20 final size:18
Alignment explanation
Indices: 71800016--71800059 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
71800006 ACATGTCATC
71800016 TTTTTAATTTAATTAACTT
1 TTTTTAATTTAATTAA-TT
*
71800035 TTATTTAATTTTATTAATT
1 TT-TTTAATTTAATTAATT
71800054 TTTTTA
1 TTTTTA
71800060 TAACAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 6 0.26
20 13 0.57
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTAATTTAATTAATT
Found at i:71805655 original size:39 final size:39
Alignment explanation
Indices: 71805612--71805743 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
71805602 GGTCTTTAAC
* ** *
71805612 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
71805651 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
71805690 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
71805729 CCGGATATATTTCCA
1 CCGGATATATTTCCA
71805744 ATCTCATATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:71808067 original size:24 final size:22
Alignment explanation
Indices: 71808040--71808085 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
71808030 ATGGTCTTAC
71808040 ATGTAATCACATTCTGGTAACCTA
1 ATGTAATCACATT-T-GTAACCTA
* *
71808064 ATGTCATGACATTTGTAACCTA
1 ATGTAATCACATTTGTAACCTA
71808086 TACTATTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 11 0.55
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (22 bp):
ATGTAATCACATTTGTAACCTA
Found at i:71827921 original size:47 final size:48
Alignment explanation
Indices: 71827658--71827915 Score: 276
Period size: 49 Copynumber: 5.4 Consensus size: 48
71827648 TGTGCTAGTA
** **
71827658 TAAGA-CATGTCTGGGACATGGCATCGGCACAGAGATGT-GGGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGG-AC-TTGAT-TCGATAGCCAGTG
* * * *
71827707 TAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCGATAGCCAGTG
*
71827756 TAAGACCATGTCTGGGACATGGCATC-GACTTGA-TGGATAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGAT-AGCCAGTG
* * * *
71827803 TAAGACCATGTATGGGACATGGCGTCGGCCTTGATTTCGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCGATAGCCAGTG
* *
71827852 TAAGACCATGTCTGGGACATGCCATC-GACTTGA-TGGATAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGAT-AGCCAGTG
71827899 TAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGA
71827916 TATGCCTTCG
Statistics
Matches: 178, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
46 8 0.04
47 55 0.31
48 20 0.11
49 70 0.39
50 25 0.14
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGATAGCCAGTG
Found at i:71827927 original size:96 final size:96
Alignment explanation
Indices: 71827699--71827915 Score: 407
Period size: 96 Copynumber: 2.3 Consensus size: 96
71827689 GAGATGTGGG
71827699 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
*
71827764 TGTCTGGGACATGGCATCGACTTGATGGATA
66 TGTCTGGGACATGCCATCGACTTGATGGATA
* *
71827795 AGCCAGTGTAAGACCATGTATGGGACATGGCGTCGGCCTTGATTTCGATAGTCAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
71827860 TGTCTGGGACATGCCATCGACTTGATGGATA
66 TGTCTGGGACATGCCATCGACTTGATGGATA
71827891 AGCCAGTGTAAGACCATGTCTGGGA
1 AGCCAGTGTAAGACCATGTCTGGGA
71827916 TATGCCTTCG
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 117 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
TGTCTGGGACATGCCATCGACTTGATGGATA
Found at i:71835227 original size:27 final size:27
Alignment explanation
Indices: 71835197--71835472 Score: 345
Period size: 27 Copynumber: 10.2 Consensus size: 27
71835187 TTAGTTTACC
*
71835197 AAATTAACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
71835224 AAATTACTAGAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71835251 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
71835278 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
71835305 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
71835332 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
71835359 AAATCACCAAAATACTCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71835386 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
71835413 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
71835440 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
71835467 AAATTA
1 AAATTA
71835473 TTGAAATACC
Statistics
Matches: 212, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 212 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:71835383 original size:108 final size:108
Alignment explanation
Indices: 71835188--71835458 Score: 407
Period size: 108 Copynumber: 2.5 Consensus size: 108
71835178 TAGAATACTT
* * *
71835188 TAGTTTACCAAATTAACAAAATACCCCTGGTTTGTAAAATTACTAGAATATCCTTGGTTTATAAA
1 TAGTTTACAAAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAA
* *
71835253 ATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT
66 ATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
* * *
71835296 TGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAA
1 TAGTTTACAAAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAA
*
71835361 ATCACCAAAATACTCCTAGTTTGTAAAATTACCAAAATACCCC
66 ATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
** * * *
71835404 TAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCT
1 TAGTTTACAAAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATA-CCCT
71835459 GATTTGTGAA
Statistics
Matches: 147, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
108 143 0.97
109 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (108 bp):
TAGTTTACAAAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAA
ATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCC
Found at i:71835536 original size:27 final size:27
Alignment explanation
Indices: 71835249--71835538 Score: 178
Period size: 27 Copynumber: 10.7 Consensus size: 27
71835239 CCTTGGTTTA
* **
71835249 TAAAATCACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-AATTTG
*** *
71835276 TAAAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCAATTTG
* **
71835303 CAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-AATTTG
* *** *
71835330 TAAAATTACTAAAATACCCTTTGTTTA
1 TAAAATTACCAAAATACCCTCAATTTG
* *
71835357 TAAAATCACCAAAATACTCCT-AGTTTG
1 TAAAATTACCAAAATAC-CCTCAATTTG
*
71835384 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTC-AATTTG
* *
71835411 TAAAATTATCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTC-AATTTG
*
71835438 TAAAATTACCAAAATATCCCT-GATTTG
1 TAAAATTACCAAAATA-CCCTCAATTTG
* *** * * **
71835465 TGAAATTATTGAAATACCTTCGACCTG
1 TAAAATTACCAAAATACCCTCAATTTG
*** *
71835492 TAAAATTATTGAAATACCCTCAACTTG
1 TAAAATTACCAAAATACCCTCAATTTG
*
71835519 TAAAATTACCAAAGTACCCT
1 TAAAATTACCAAAATACCCT
71835539 TGATTTACAG
Statistics
Matches: 219, Mismatches: 35, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
26 5 0.02
27 208 0.95
28 6 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCAATTTG
Found at i:71835614 original size:27 final size:27
Alignment explanation
Indices: 71835576--71835904 Score: 446
Period size: 27 Copynumber: 12.3 Consensus size: 27
71835566 CGATTTAAAA
* *
71835576 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
71835603 AAATACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
71835630 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
71835657 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
71835684 AATTATCGCAATACCCCTGTAGGG-AG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
71835710 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
71835737 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
71835764 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
71835791 AATTATCGCGATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
71835818 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
71835845 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
71835872 AATTACAGAGATA-CCTTGTATGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
71835898 AATTACC
1 AATTACC
71835905 ATTTTGCCCC
Statistics
Matches: 269, Mismatches: 32, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
26 39 0.14
27 230 0.86
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:71835752 original size:134 final size:135
Alignment explanation
Indices: 71835576--71835904 Score: 475
Period size: 134 Copynumber: 2.5 Consensus size: 135
71835566 CGATTTAAAA
* *
71835576 AATTACCAAAATACCCTTGTAGGGTAGAAATACTA-AAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTAC-AGAAATACCCCTGTAGGGTAGAATTACCGAA
* *
71835640 ATACCCCTATAGGGTAGAATTACCGCAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTA
65 ATACCCCTATAGGGTAGAATTACCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTA
71835705 GGG-AG
130 GGGTAG
** *
71835710 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * * *
71835775 TACCTCTGTAGGGTAGAATTATCGCGATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAG
66 TACCCCTATAGGGTAGAATTACCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAG
71835840 GGTAG
131 GGTAG
* * * * * *
71835845 AATTACTAAAATACCCCTGTAGGGTGGAATTACAGAGATA-CCTTGTATGGTAAAATTACC
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACC
71835905 ATTTTGCCCC
Statistics
Matches: 173, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
134 137 0.79
135 36 0.21
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (135 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTATAGGGTAGAATTACCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAG
GGTAG
Found at i:71836584 original size:27 final size:27
Alignment explanation
Indices: 71836554--71836655 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
71836544 ATTCTGTTAA
* * *
71836554 GTGGCTTTGCTACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
71836581 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
71836608 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * **
71836635 GTGACTCTATCACAATATCTG
1 GTGGCTATGCCACAATATCTG
71836656 ATAACTAAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.78
28 7 0.11
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:71836830 original size:6 final size:6
Alignment explanation
Indices: 71836792--71836929 Score: 122
Period size: 6 Copynumber: 22.3 Consensus size: 6
71836782 TTGTATTCAC
* * *
71836792 ATTCTG ATTTTAG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCT-G ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
71836842 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
71836892 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
71836930 AATGTTTCTT
Statistics
Matches: 108, Mismatches: 12, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.06
6 85 0.79
7 14 0.13
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:71836842 original size:31 final size:31
Alignment explanation
Indices: 71836792--71836872 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
71836782 TTGTATTCAC
*
71836792 ATTCTGATTTTAGATTCTGTTACTTGATACTG
1 ATTCTGATTTT-GATTCTGTTACCTGATACTG
71836824 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
71836855 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
71836873 ATTCTGTCAC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 36 0.77
32 11 0.23
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:71836862 original size:37 final size:37
Alignment explanation
Indices: 71836816--71836915 Score: 155
Period size: 37 Copynumber: 2.7 Consensus size: 37
71836806 TTCTGTTACT
* * * *
71836816 TGATACTGATTCTGATTTTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
*
71836853 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATTC
1 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
71836890 TGATTCTGATTCTGATTCTGATTCTG
1 TGATTCTGATTCTGATTCTGATTCTG
71836916 ATTCTAGTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
Found at i:71836890 original size:31 final size:31
Alignment explanation
Indices: 71836792--71836909 Score: 119
Period size: 31 Copynumber: 3.6 Consensus size: 31
71836782 TTGTATTCAC
* * * *
71836792 ATTCTGATTTTAGATTCTGTTACTTGATACTG
1 ATTCTGATTCT-GATTCTGTTACCTAATTCTG
*
71836824 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACC---TA---ATTCTG
*
71836861 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATTCTG
71836892 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
71836910 ATTCTGATTC
Statistics
Matches: 75, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
31 35 0.47
32 11 0.15
34 3 0.04
37 26 0.35
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATTCTG
Found at i:71838514 original size:203 final size:204
Alignment explanation
Indices: 71838143--71838542 Score: 549
Period size: 203 Copynumber: 2.0 Consensus size: 204
71838133 ATTCATTTCA
* * *
71838143 ATTTATGGAGTCCATCTTCTGACATCTCAAAATGCGGTAATAAATATTTCCTAACTTTTATTAAT
1 ATTTATGGAGTCCATCTTCTGACATCTCAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAAT
* *
71838208 GATCACTCCAGAAAAATGTTTGGGTTTTTTTTTAAACAGAAAAGTGAAGTCTTCGGAATCTTCAA
66 GATCACTCCAGAAAAATGTTAGGGTTTTTTTTGAAACAGAAAAGTGAAGTCTTCGGAATCTTCAA
** * * ** * * *
71838273 ACAGTGGAATATATCATTAGAAGAACAAATTAAAAAGTCCGTGAAGCGGTTGAGGATTGATAATG
131 ACAGTAAAAGACATCATTAGAAGAACAAACCAAAAAGTCCATGAAGCGGTTGAGAATGGATAATG
71838338 GTAATTCTG
196 GTAATTCTG
* *
71838347 ATTTATGG-GTCTATCTTCT-AGCATCTTAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAA
1 ATTTATGGAGTCCATCTTCTGA-CATCTCAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAA
*
71838410 TGATCACTCCAG-AAAA-GTTAGGGTTTATTCTTTGAAACAGAAAAGTGAAGTCTTTGGAATCTT
65 TGATCACTCCAGAAAAATGTTAGGGTTT-TT-TTTGAAACAGAAAAGTGAAGTCTTCGGAATCTT
* * *
71838473 CAAACAGTAAAAGACA-CTATTAGAAGAACAAACCGAAAAGTCCATGAGGTGGTTGAGAATGGAT
128 CAAACAGTAAAAGACATC-ATTAGAAGAACAAACCAAAAAGTCCATGAAGCGGTTGAGAATGGAT
71838537 AATGGT
192 AATGGT
71838543 CTTGAGTTCT
Statistics
Matches: 172, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
201 9 0.05
202 8 0.05
203 147 0.85
204 8 0.05
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (204 bp):
ATTTATGGAGTCCATCTTCTGACATCTCAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAAT
GATCACTCCAGAAAAATGTTAGGGTTTTTTTTGAAACAGAAAAGTGAAGTCTTCGGAATCTTCAA
ACAGTAAAAGACATCATTAGAAGAACAAACCAAAAAGTCCATGAAGCGGTTGAGAATGGATAATG
GTAATTCTG
Found at i:71838689 original size:42 final size:42
Alignment explanation
Indices: 71838630--71838710 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
71838620 TAGAATGGAG
71838630 CTGTAGAAAGAATAAATAGAACCTTACTGGAAAAGGCTCAAT
1 CTGTAGAAAGAATAAATAGAACCTTACTGGAAAAGGCTCAAT
*
71838672 CTGTAGAAAGAATAAATAGAACCTTGCTGGAAAAGGCTC
1 CTGTAGAAAGAATAAATAGAACCTTACTGGAAAAGGCTC
71838711 GATGCATACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (42 bp):
CTGTAGAAAGAATAAATAGAACCTTACTGGAAAAGGCTCAAT
Found at i:71846972 original size:21 final size:21
Alignment explanation
Indices: 71846946--71846985 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71846936 GCATTTTCTG
71846946 TGGTGG-ATATGGAGGTGAATT
1 TGGTGGCAT-TGGAGGTGAATT
*
71846967 TGGTGGCATTGGTGGTGAA
1 TGGTGGCATTGGAGGTGAA
71846986 GATGAAGCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.20, C:0.03, G:0.45, T:0.33
Consensus pattern (21 bp):
TGGTGGCATTGGAGGTGAATT
Found at i:71856924 original size:46 final size:43
Alignment explanation
Indices: 71856776--71856916 Score: 124
Period size: 46 Copynumber: 3.1 Consensus size: 43
71856766 TGTAACTCGC
* *
71856776 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTA
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---A
* * *
71856823 -CATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAA
*
71856869 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAA
71856913 CCAT
1 CCAT
71856917 CCTAGTGACA
Statistics
Matches: 77, Mismatches: 10, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 31 0.40
47 30 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAA
Found at i:71857364 original size:30 final size:30
Alignment explanation
Indices: 71857330--71857389 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
71857320 ATTTAATACG
71857330 AACTTTGGAAAAAGTACACTTTTGCCCCTA
1 AACTTTGGAAAAAGTACACTTTTGCCCCTA
* * * * *
71857360 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAAGTACACTTTTGCCCCTA
71857390 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAAGTACACTTTTGCCCCTA
Found at i:71875232 original size:29 final size:30
Alignment explanation
Indices: 71875176--71875232 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
71875166 GTTTGATTGC
* *
71875176 TTTTGGTTGAGTCTTGTTAGTGTCATTAGT
1 TTTTGGTTGAATCTTGTTAGTGTAATTAGT
*
71875206 TTTTGGTTGAAT-TTGTTAGTTTAATTA
1 TTTTGGTTGAATCTTGTTAGTGTAATTA
71875233 TATTCATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.18, C:0.04, G:0.23, T:0.56
Consensus pattern (30 bp):
TTTTGGTTGAATCTTGTTAGTGTAATTAGT
Found at i:71876568 original size:17 final size:16
Alignment explanation
Indices: 71876530--71876578 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
71876520 TGTTGAGAAC
71876530 TTTTATTTA-TTATTTT
1 TTTTATTTACTT-TTTT
*
71876546 TATTATTTACTTTTTT
1 TTTTATTTACTTTTTT
71876562 TCTTTATTTATCTTTTT
1 T-TTTATTTA-CTTTTT
71876579 AAATTACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.46
17 9 0.32
18 6 0.21
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTACTTTTTT
Found at i:71884590 original size:25 final size:26
Alignment explanation
Indices: 71884560--71884622 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
71884550 TTAGCTCTTA
71884560 TGAGCTTTCCGAT-ATAGGCTCTTCG
1 TGAGCTTTCCGATAATAGGCTCTTCG
* * *
71884585 TGAGCTTTCCGTTAATTGGCTCTTTG
1 TGAGCTTTCCGATAATAGGCTCTTCG
*
71884611 TGAGCTTCCCGA
1 TGAGCTTTCCGA
71884623 CAGTGCTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (26 bp):
TGAGCTTTCCGATAATAGGCTCTTCG
Found at i:71884706 original size:24 final size:24
Alignment explanation
Indices: 71884672--71884719 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
71884662 GTTTCTCGAT
*
71884672 ATATGGCTCTTTGTGAGCTTCCCG
1 ATATGGCTCTTTGTGAACTTCCCG
*
71884696 ATATGGTTCTTTGTGAACTTCCCG
1 ATATGGCTCTTTGTGAACTTCCCG
71884720 TTGTATAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.40
Consensus pattern (24 bp):
ATATGGCTCTTTGTGAACTTCCCG
Found at i:71890698 original size:23 final size:23
Alignment explanation
Indices: 71890672--71890717 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
71890662 ATTATGATAG
71890672 CATAGTTCGTCATTTTATAGGCT
1 CATAGTTCGTCATTTTATAGGCT
71890695 CATAGTTCGTCATTTTATAGGCT
1 CATAGTTCGTCATTTTATAGGCT
71890718 TCTAACAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (23 bp):
CATAGTTCGTCATTTTATAGGCT
Found at i:71896227 original size:30 final size:30
Alignment explanation
Indices: 71896182--71896254 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
71896172 CACAGCCAGA
* *
71896182 GACACGGGCGGGTGTGACACACGGCTAGGT
1 GACACGGCCGTGTGTGACACACGGCTAGGT
*
71896212 GATACGGCCGTGTGTGACACACGGCTAGGT
1 GACACGGCCGTGTGTGACACACGGCTAGGT
*
71896242 GACACTGCCGTGT
1 GACACGGCCGTGT
71896255 ATCCCCTGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.18
Consensus pattern (30 bp):
GACACGGCCGTGTGTGACACACGGCTAGGT
Found at i:71904470 original size:42 final size:42
Alignment explanation
Indices: 71904410--71904491 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
71904400 GGTGCAGGGG
71904410 ACACATGGCTAAATCACACGTCCATGGGGCTGACCATGTGTC
1 ACACATGGCTAAATCACACGTCCATGGGGCTGACCATGTGTC
* * * *
71904452 ACACATGGCCTAGA-CACACGTCCATGTGTCTGCCCATGTG
1 ACACATGG-CTAAATCACACGTCCATGGGGCTGACCATGTG
71904492 GACAAAAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.89
43 4 0.11
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.22
Consensus pattern (42 bp):
ACACATGGCTAAATCACACGTCCATGGGGCTGACCATGTGTC
Found at i:71905909 original size:43 final size:42
Alignment explanation
Indices: 71905846--71905967 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
71905836 TACTGTACCA
* *
71905846 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
71905888 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTTATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
71905931 ATGCCATATCCAAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
71905968 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:71912078 original size:49 final size:50
Alignment explanation
Indices: 71912005--71912132 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
71911995 TCAAATTGAT
*
71912005 GCCATGTCCCAG-CATGGTCTTACACTGACTATCGA-A-ATC-GAGGCCGAC
1 GCCATGTCCCAGACATGGTTTTACACTGACTATC-ACATATCTG-GGCCGAC
* * *
71912053 GCCATGTCCCAGACATGGTTTTACACT-AGCTCTCACATATCTGTGCCGAT
1 GCCATGTCCCAGACATGGTTTTACACTGA-CTATCACATATCTGGGCCGAC
* *
71912103 ACCATGTCCCAAACATGGTTTTACACTGAC
1 GCCATGTCCCAGACATGGTTTTACACTGAC
71912133 ACCTCTATAC
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
48 14 0.21
49 18 0.26
50 34 0.50
51 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTTTTACACTGACTATCACATATCTGGGCCGAC
Found at i:71912248 original size:46 final size:47
Alignment explanation
Indices: 71912002--71912320 Score: 190
Period size: 48 Copynumber: 6.7 Consensus size: 47
71911992 TCATCAAATT
* * ** *
71912002 GATGCCATGTCCCAG-CATGGTCTTACACTGACTATCGAAATCGAGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTC-ATCTCAAGGCC
* * * * *
71912050 GACGCCATGTCCCAGACATGGTTTTACACTAGCTCTCACATATC-TGTGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCTCAAG-GCC
* * * * * * *
71912100 GATACCATGTCCCAAACATGGTTTTACACTGACAC-C-TCTATACATGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-CA-AGGCC
* * * * *
71912148 AATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTCATA-GCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCA-AGGCC
* * * *
71912194 GAT-ACATGTACTAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCAAGGCC
* * *
71912240 GATG-CATGTCCCAGACATGTCTTACACCGGCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCC
71912286 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTC
71912321 CATTAGCTCT
Statistics
Matches: 212, Mismatches: 42, Indels: 34
0.74 0.15 0.12
Matches are distributed among these distances:
44 8 0.04
45 15 0.07
46 57 0.27
47 20 0.09
48 58 0.27
49 17 0.08
50 36 0.17
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCC
Found at i:71916098 original size:46 final size:46
Alignment explanation
Indices: 71915850--71916210 Score: 222
Period size: 46 Copynumber: 7.6 Consensus size: 46
71915840 GGACTAGTAT
* * *
71915850 CGATGCCATGTCCTAGACATGGTCTTACACTGG--TGCATCCATCAA-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-C-TCAAGGC
* ** *
71915897 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCAAAATCGAGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-C-ATCTCAAGGC
* * * * *
71915946 CGACGCCATGTCCCAGACATGGTCTTACACTAGCACTCACATATC-CGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACT-G-GCTTACATCTCAAG-GC
* * * *
71915996 CGATGCCATGTCCCAGACATGGTCCTACATTGAC--ACATATCATA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCA-AGGC
* * *
71916042 CGATGCATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGC
* * * *
71916088 CGTTGCATGTCCCAGACATGTCTTACACTGGCTTTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGC
* *
71916134 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CTTAT-AATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAA---GGC
*
71916182 CAATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
71916211 TGCACACAAA
Statistics
Matches: 263, Mismatches: 33, Indels: 37
0.79 0.10 0.11
Matches are distributed among these distances:
44 10 0.04
45 16 0.06
46 78 0.30
47 60 0.23
48 25 0.10
49 34 0.13
50 36 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGC
Found at i:71916159 original size:94 final size:95
Alignment explanation
Indices: 71915850--71916210 Score: 311
Period size: 94 Copynumber: 3.8 Consensus size: 95
71915840 GGACTAGTAT
* * * * *
71915850 CGATGCCATGTCCTAGACATGGTCTTACACTGG--TGCATCCATC-AAGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-AATCGAGGCCGATGCCATGTCCCA
* *
71915912 GACATGGTCTTACACTGACTATCAAAATCGAGGC
65 GACATGGTCTTACACTGACT-TC-ATATC-ATGC
* * * *
71915946 CGACGCCATGTCCCAGACATGGTCTTACACTAGCACTCACAT-ATCCG-TGCCGATGCCATGTCC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTTACATAAT-CGAGGCCGATGCCATGTCC
* * *
71916009 CAGACATGGTCCTACATTGAC-ACATATCATAGC
63 CAGACATGGTCTTACACTGACTTCATATCAT-GC
* * *
71916042 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACAT-TTCGAGGCCGTTG-CATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATAATCGAGGCCGATGCCATGTCCCAG
* * *
71916103 ACAT-GTCTTACACTGGCTTTCGTCTCAATGC
66 ACATGGTCTTACACTGAC-TTCATATC-ATGC
* * *
71916134 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TATAAT-GTGGCCAATG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATAATCGAGGCCGATGCCATGTCCCA
71916196 GACAT-GTCTTACACT
65 GACATGGTCTTACACT
71916211 TGCACACAAA
Statistics
Matches: 219, Mismatches: 31, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
90 10 0.05
91 16 0.07
92 24 0.11
93 16 0.07
94 57 0.26
95 16 0.07
96 39 0.18
97 2 0.01
98 2 0.01
99 34 0.16
100 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATAATCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTTCATATCATGC
Found at i:71916201 original size:140 final size:143
Alignment explanation
Indices: 71915850--71916210 Score: 349
Period size: 138 Copynumber: 2.5 Consensus size: 143
71915840 GGACTAGTAT
* * *** * * *
71915850 CGATGCCATGTCCTAGACATGGTCTTACACTGGTGCATCCATCA-AGTCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCCTACACTGACACAT--ATAATAGCCAATG-CATGTCCCAGA
71915914 CATGGTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
63 CAT-GTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
**
71915979 CACTCACATATCCGTGC
127 CACTCACATATCAATGC
* * * *
71915996 CGATGCCATGTCCCAGACATGGTCCTACATTGACACATATCATAGCCGATGCATGTCCTAGACAT
1 CGATGCCATGTCCCAGACATGGTCCTACACTGACACATATAATAGCCAATGCATGTCCCAGACAT
* ** ** *
71916061 GTCTTACACTGGCT-T-ACATTTCGAGGCCGTTG-CATGTCCCAGACAT-GTCTTACACT-G-GC
66 GTCTTACACTGACTATCA-AAATCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCAC
** * *
71916120 TTTCGTCTCAATGC
130 TCACATATCAATGC
* * * * *
71916134 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTGGCCAATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCCTACACTGACACATATAA--TAGCCAATGCATGTCCCAGAC
71916199 ATGTCTTACACT
64 ATGTCTTACACT
71916211 TGCACACAAA
Statistics
Matches: 182, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
138 45 0.25
139 1 0.01
140 40 0.22
141 15 0.08
142 12 0.07
143 13 0.07
144 17 0.09
145 7 0.04
146 32 0.18
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (143 bp):
CGATGCCATGTCCCAGACATGGTCCTACACTGACACATATAATAGCCAATGCATGTCCCAGACAT
GTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCACT
CACATATCAATGC
Found at i:71922658 original size:30 final size:30
Alignment explanation
Indices: 71922624--71922684 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71922614 TTCCCGAGCC
*
71922624 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * *
71922654 TAGGGGAAAAATTGTAAATTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
71922684 T
1 T
71922685 GAGTTAGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:71923510 original size:64 final size:64
Alignment explanation
Indices: 71923344--71923516 Score: 179
Period size: 68 Copynumber: 2.6 Consensus size: 64
71923334 TGGATGATAC
* * * *
71923344 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGAGCTAC-
71923409 AG
63 AG
* * * *
71923411 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGAGCTA
71923475 C-G
62 CAG
*
71923477 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
71923517 GGCTACTACA
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 48 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTGTACAAGAGAGCTACAG
Found at i:71923621 original size:49 final size:50
Alignment explanation
Indices: 71923490--71923623 Score: 207
Period size: 50 Copynumber: 2.7 Consensus size: 50
71923480 TATATGTAGC
* *
71923490 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAAT
* * * *
71923540 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAAT
71923590 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
71923624 TGCATACCAG
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
49 31 0.41
50 45 0.59
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAAT
Found at i:71930052 original size:24 final size:24
Alignment explanation
Indices: 71930016--71930157 Score: 178
Period size: 24 Copynumber: 6.0 Consensus size: 24
71930006 TACCAATATA
** *
71930016 TCAGCTCACTAGAGCTTCCTGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
*
71930040 TCAGCTCGTTAGATCTTACTGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
** *
71930064 TCAGCTTATTAGATCTTACTGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
* *
71930088 TCAACTCGTTAGAGCTTACAGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
*
71930112 TCAGCTCGTTAGAGCTAACTGTT-
1 TCAGCTCGTTAGAGCTTACTGTTC
*
71930135 TCAGCTCGATAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTGTT
71930158 TAAAAGCTCA
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
23 21 0.21
24 81 0.79
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (24 bp):
TCAGCTCGTTAGAGCTTACTGTTC
Found at i:71930355 original size:20 final size:19
Alignment explanation
Indices: 71930328--71930434 Score: 97
Period size: 20 Copynumber: 5.4 Consensus size: 19
71930318 AGATATGTGT
*
71930328 TTATATGGATGAATTACTA
1 TTATATGGATGAATTACTG
71930347 TTGATATGGATGAATTACTG
1 TT-ATATGGATGAATTACTG
* *
71930367 TTATTATTGATGAACTACTG
1 TTA-TATGGATGAATTACTG
* *
71930387 TTTATATAGATGAAATACTGG
1 -TTATATGGATGAATTACT-G
* * *
71930408 TTATATGAATGAAGTACAG
1 TTATATGGATGAATTACTG
71930427 TTTATATG
1 -TTATATG
71930435 AATAGAAATG
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
19 4 0.05
20 66 0.89
21 4 0.05
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (19 bp):
TTATATGGATGAATTACTG
Found at i:71930435 original size:20 final size:20
Alignment explanation
Indices: 71930325--71930443 Score: 91
Period size: 20 Copynumber: 5.9 Consensus size: 20
71930315 ATAAGATATG
* *
71930325 TGTTTATATGGATGAATTAC
1 TGTTTATATGAATGAAATAC
* * * *
71930345 TATTGATATGGATGAATTAC
1 TGTTTATATGAATGAAATAC
*
71930365 TG-TTATTATTG-ATGAACTAC
1 TGTTTA-TA-TGAATGAAATAC
71930385 TGTTTATAT-AGATGAAATAC
1 TGTTTATATGA-ATGAAATAC
* *
71930405 TGGTTATATGAATGAAGTAC
1 TGTTTATATGAATGAAATAC
*
71930425 AGTTTATATGAATAGAAAT
1 TGTTTATATGAAT-GAAAT
71930444 GAATTGCAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
19 3 0.04
20 68 0.84
21 10 0.12
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.40
Consensus pattern (20 bp):
TGTTTATATGAATGAAATAC
Found at i:71933554 original size:93 final size:93
Alignment explanation
Indices: 71933395--71933566 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
71933385 CGCCCATAAG
* * * *
71933395 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATGAGTAAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTAAACTCGGACTCAACTCA
71933460 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* ** ** *
71933488 CGAACTCGGACTCAACTCAACGAGTTTTGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTAAACTCGGACTCAACTCA
71933553 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71933567 TCAACCATCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTAAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71933582 original size:46 final size:45
Alignment explanation
Indices: 71933396--71933571 Score: 110
Period size: 46 Copynumber: 3.8 Consensus size: 45
71933386 GCCCATAAGC
* * ** * *
71933396 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTC-ACATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT-C-TCAGT
* *
71933442 AAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCTCAGT
** *** *
71933489 GAACTCGGACTCAACTCAACGAGTTTTGA--CATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACAT-C-TCAGT
71933535 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC
71933572 CATCCTAGTG
Statistics
Matches: 97, Mismatches: 21, Indels: 23
0.69 0.15 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 53 0.55
47 28 0.29
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCTCAGT
Found at i:71935986 original size:15 final size:16
Alignment explanation
Indices: 71935960--71936015 Score: 82
Period size: 15 Copynumber: 3.7 Consensus size: 16
71935950 CAAGGAAACC
71935960 GAATAAAGAAATCCAA
1 GAATAAAGAAATCCAA
*
71935976 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
71935990 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
71936005 GAATAAAGAAA
1 GAATAAAGAAA
71936016 CCGAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:71939099 original size:92 final size:93
Alignment explanation
Indices: 71938936--71939106 Score: 263
Period size: 92 Copynumber: 1.8 Consensus size: 93
71938926 CGCCCATAAG
** * * *
71938936 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71939001 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
71939029 CGAACTCAAACTCAACTCAACGAG-TTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
71939093 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
71939107 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 48 0.69
93 22 0.31
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71946260 original size:29 final size:29
Alignment explanation
Indices: 71946197--71946261 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
71946187 AAAATTCATA
* * * *
71946197 ATTAACATTGAATAATTACCTAAAATTGC
1 ATTAAGATTAAATAATCACCTAAAATTAC
71946226 ATTAAGATTAAATAATCACCTAAAATTAC
1 ATTAAGATTAAATAATCACCTAAAATTAC
71946255 ATTAAGA
1 ATTAAGA
71946262 ATGCGATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.32
Consensus pattern (29 bp):
ATTAAGATTAAATAATCACCTAAAATTAC
Found at i:71948217 original size:47 final size:45
Alignment explanation
Indices: 71948051--71948413 Score: 207
Period size: 47 Copynumber: 7.8 Consensus size: 45
71948041 GGGATATATT
* * * *
71948051 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCT--GTAG
* * * * * *
71948101 GCTGTTGCATGTCCCAAACATGTCTTACACTAGCAAAACTCT-TA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAG
* * *
71948145 GCCGATGCGTGCCCCAGACACGTCTTACACTGGCTATCTCTGTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTG-T-AG
* * *
71948192 GCCAATGCATGTCCTAGACATGTCTTACATTGGCAGTCATCTCTGT--
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC--T-ATCTCTGTAG
* *
71948238 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-GGTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-G
* * ** * *
71948286 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTAG
* * * * *
71948332 GCCGATGCTATCTCCCAAACATGGACTTACACTGGCTCTCATAATGT-G
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTAG
* * **
71948380 GCCGAAGCATGTCCCAAACACATCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
71948414 GCACAAATCA
Statistics
Matches: 244, Mismatches: 51, Indels: 40
0.73 0.15 0.12
Matches are distributed among these distances:
43 5 0.02
44 27 0.11
45 7 0.03
46 43 0.18
47 79 0.32
48 53 0.22
49 18 0.07
50 12 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAG
Found at i:71948335 original size:94 final size:92
Alignment explanation
Indices: 71948050--71948410 Score: 293
Period size: 94 Copynumber: 3.9 Consensus size: 92
71948040 TGGGATATAT
* * * *
71948050 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATACGCATGCTGTTGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATG---GCCGATGCATGTC
* *
71948114 CCAAACATGTCTTACACTAGCAAAACTCTTA
63 CCAAACATGTCTTACACTAGC-AATCTCTGA
* * * * * *
71948145 -GCCGATG-CGTGCCCCAGACA-CGTCTTACACTGGCTATCTCTGTTGA-GGCCAATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-ATGAT-ATGGCCGATGCATGTCC
* * * *
71948206 TAGACATGTCTTACATTGGCAGTCATCTCTG-
64 CAAACATGTCTTACACTAGCA---ATCTCTGA
* * *
71948237 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATGGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATGGCCGATGCATGTCCCA
* **
71948302 GACATGTCTTACACTAGCCCTCGTCTGGA
66 AACATGTCTTACACTAGCAATC-TCT-GA
* * * * * * * *
71948331 TGCCGATGCTATCTCCCAAACATGGACTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATGGCCGATGCATGTCCCA
**
71948396 AACACATCTTACACT
66 AACATGTCTTACACT
71948411 GGCGCACAAA
Statistics
Matches: 211, Mismatches: 42, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
90 1 0.00
91 29 0.14
92 19 0.09
93 26 0.12
94 119 0.56
95 17 0.08
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATGGCCGATGCATGTCCCA
AACATGTCTTACACTAGCAATCTCTGA
Found at i:71950827 original size:22 final size:22
Alignment explanation
Indices: 71950802--71950844 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
71950792 TACACACGCA
*
71950802 AATATTTTTTAAAAAATATTTT
1 AATATTATTTAAAAAATATTTT
*
71950824 AATATTATTTAAAATATATTT
1 AATATTATTTAAAAAATATTT
71950845 AATTATCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AATATTATTTAAAAAATATTTT
Found at i:71953895 original size:13 final size:13
Alignment explanation
Indices: 71953867--71953904 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
71953857 GTTTTGTTAT
71953867 TAATCTATTATT-A
1 TAAT-TATTATTAA
71953880 TAATTATTATTAA
1 TAATTATTATTAA
71953893 TAATTATTATTA
1 TAATTATTATTA
71953905 TGGTTTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (13 bp):
TAATTATTATTAA
Found at i:71954189 original size:18 final size:18
Alignment explanation
Indices: 71954166--71954204 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
71954156 TATATGTACA
*
71954166 ATTTTTATATATG-TATTT
1 ATTTTTAAATA-GATATTT
71954184 ATTTTTAAATAGATATTT
1 ATTTTTAAATAGATATTT
71954202 ATT
1 ATT
71954205 ATAATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATTTTTAAATAGATATTT
Found at i:71954214 original size:3 final size:3
Alignment explanation
Indices: 71954200--71954263 Score: 64
Period size: 3 Copynumber: 22.0 Consensus size: 3
71954190 AAATAGATAT
* *
71954200 TTA TTA TAA TTA TTA -TA GTT- TTA -TA TTA -AA TTA TTAA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
71954243 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
71954264 AAATAAATTA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 7 0.14
3 40 0.78
4 4 0.08
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:71954348 original size:21 final size:21
Alignment explanation
Indices: 71954324--71954370 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
71954314 AAATATATAT
71954324 AAATACACTTGTAATAAAATA
1 AAATACACTTGTAATAAAATA
***
71954345 AAATATTTTTGTAATAAAATA
1 AAATACACTTGTAATAAAATA
71954366 AAATA
1 AAATA
71954371 TTTTCTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATACACTTGTAATAAAATA
Found at i:71954381 original size:20 final size:21
Alignment explanation
Indices: 71954332--71954374 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
71954322 ATAAATACAC
71954332 TTGTAATAAAATAAAATATTT
1 TTGTAATAAAATAAAATATTT
71954353 TTGTAATAAAATAAAATATTT
1 TTGTAATAAAATAAAATATTT
71954374 T
1 T
71954375 CTTATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
TTGTAATAAAATAAAATATTT
Found at i:71954418 original size:3 final size:3
Alignment explanation
Indices: 71954410--71954458 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
71954400 ATGAATTAAA
* *
71954410 TAT TAT TA- TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
71954454 TAT TA
1 TAT TA
71954459 ACTAATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:71954427 original size:13 final size:13
Alignment explanation
Indices: 71954409--71954458 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
71954399 TATGAATTAA
71954409 ATATTATTATATT
1 ATATTATTATATT
71954422 ATATTA-T-TATT
1 ATATTATTATATT
71954433 ATAATGTATTATTATT
1 AT-AT-TATTA-TATT
71954449 AATATTATTA
1 -ATATTATTA
71954459 ACTAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 6 0.19
12 3 0.10
13 8 0.26
14 1 0.03
15 5 0.16
16 6 0.19
17 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
ATATTATTATATT
Found at i:71954431 original size:16 final size:16
Alignment explanation
Indices: 71954410--71954456 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
71954400 ATGAATTAAA
71954410 TATTATTATATTATAT
1 TATTATTATATTATAT
* *
71954426 TATTATTATAATGTAT
1 TATTATTATATTATAT
71954442 TATTATTAATATTAT
1 TATTATT-ATATTAT
71954457 TAACTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:71954434 original size:19 final size:21
Alignment explanation
Indices: 71954410--71954456 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
71954400 ATGAATTAAA
71954410 TATTATTATAT-TA-TATTAT
1 TATTATTATATGTATTATTAT
71954429 TATTA-TA-ATGTATTATTAT
1 TATTATTATATGTATTATTAT
*
71954448 TAATATTAT
1 TATTATTAT
71954457 TAACTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 2 0.09
18 4 0.17
19 15 0.65
20 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTATTATATGTATTATTAT
Found at i:71974635 original size:27 final size:27
Alignment explanation
Indices: 71974605--71974782 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
71974595 ATATTGAGTC
* *
71974605 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71974632 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71974659 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71974687 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71974714 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
71974741 CGAACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
71974768 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71974783 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71974748 original size:82 final size:81
Alignment explanation
Indices: 71974626--71974781 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
71974616 TGCTATATAA
* * *
71974626 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGAACACTTAGTGCAACATAGTCAAA-TCGCA
71974691 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
71974708 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGAACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGAACACTTAGTGCAACATAGTCAAATCGCA
71974772 CACTTAGTGC
65 CACTTAGTGC
71974782 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGAACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:71975260 original size:12 final size:12
Alignment explanation
Indices: 71975243--71975268 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71975233 ATGGCATACT
71975243 TATGTATATATA
1 TATGTATATATA
71975255 TATGTATATATA
1 TATGTATATATA
71975267 TA
1 TA
71975269 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:71982693 original size:27 final size:27
Alignment explanation
Indices: 71982663--71982840 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71982653 ATATTGAGTC
* * * *
71982663 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
71982690 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71982717 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
71982745 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
71982772 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
71982799 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71982826 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71982841 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:71982802 original size:82 final size:81
Alignment explanation
Indices: 71982684--71982839 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71982674 TGCTATATAA
* *
71982684 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
71982749 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
71982766 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
71982830 CACTTAGTGC
65 CACTTAGTGC
71982840 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:71983340 original size:12 final size:12
Alignment explanation
Indices: 71983323--71983349 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71983313 ATGGCATACT
71983323 TATGTATATATA
1 TATGTATATATA
71983335 TATGTATATATA
1 TATGTATATATA
71983347 TAT
1 TAT
71983350 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:71989546 original size:27 final size:27
Alignment explanation
Indices: 71989515--71989692 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71989505 TAAATTGTAC
71989515 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71989542 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71989568 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71989596 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71989624 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71989651 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71989678 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71989693 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71989629 original size:82 final size:81
Alignment explanation
Indices: 71989516--71989671 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71989506 AAATTGTACA
* *
71989516 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71989580 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71989597 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71989662 TGCGAGTTGA
65 TGCGAATTGA
71989672 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71989683 original size:82 final size:81
Alignment explanation
Indices: 71989512--71989692 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71989502 GATTAAATTG
* *
71989512 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71989577 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71989593 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71989657 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71989675 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71989693 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71992942 original size:15 final size:16
Alignment explanation
Indices: 71992916--71992971 Score: 82
Period size: 15 Copynumber: 3.7 Consensus size: 16
71992906 CAAGGAAACC
71992916 GAATAAAGAAATCCAA
1 GAATAAAGAAATCCAA
*
71992932 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
71992946 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
71992961 GAATAAAGAAA
1 GAATAAAGAAA
71992972 CCGAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:71996060 original size:93 final size:93
Alignment explanation
Indices: 71995901--71996072 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
71995891 CGCCCATAAG
* * * *
71995901 CGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
71995966 ACGAGTTCGGATGCCTAGTTACATCTGA
66 ACGAGTTCGGATGCCTAGTTACATCTGA
* * *
71995994 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
71996059 ACGGGTTCGGATGC
66 ACGAGTTCGGATGC
71996073 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTGA
Found at i:71996069 original size:46 final size:45
Alignment explanation
Indices: 71995902--71996069 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
71995892 GCCCATAAGC
* * * * * *
71995902 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AAT
* * * *
71995948 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TGAC
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAT
71995995 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AAT
*
71996041 GAACTCGGACTCAACTCAACGGGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
71996070 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 55 0.55
47 29 0.29
48 1 0.01
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAT
Found at i:72000616 original size:15 final size:15
Alignment explanation
Indices: 72000567--72000617 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
72000557 CCAAAAACCT
72000567 TAAAACACCTAAATCC
1 TAAAACACC-AAATCC
* *
72000583 TAAATC-CTAAATCC
1 TAAAACACCAAATCC
* *
72000597 CAAAACACCAAATCT
1 TAAAACACCAAATCC
72000612 TAAAAC
1 TAAAAC
72000618 TACCCTGTAG
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
14 10 0.37
15 12 0.44
16 5 0.19
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAAACACCAAATCC
Found at i:72001154 original size:11 final size:11
Alignment explanation
Indices: 72001138--72001192 Score: 69
Period size: 11 Copynumber: 5.1 Consensus size: 11
72001128 GAACCTTTTC
72001138 TCTTTTTTT-T
1 TCTTTTTTTAT
72001148 TCTTTTTTTAT
1 TCTTTTTTTAT
*
72001159 TCTTTATTTAT
1 TCTTTTTTTAT
72001170 TCTTTATTTTAT
1 TCTTT-TTTTAT
*
72001182 T-TTATTTTAT
1 TCTTTTTTTAT
72001192 T
1 T
72001193 TATTTTTAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
10 16 0.40
11 18 0.45
12 6 0.15
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (11 bp):
TCTTTTTTTAT
Found at i:72001190 original size:22 final size:21
Alignment explanation
Indices: 72001138--72001200 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
72001128 GAACCTTTTC
*
72001138 TCTTTTTTTTTCTTTTTTTAT
1 TCTTTTTTATTCTTTTTTTAT
72001159 TCTTTATTTATTCTTTATTTTAT
1 TCTTT-TTTATTCTTT-TTTTAT
*
72001182 T-TTATTTTATT-TATTTTTA
1 TCTT-TTTTATTCTTTTTTTA
72001201 GGGCATTTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
20 5 0.14
21 7 0.19
22 17 0.46
23 8 0.22
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.79
Consensus pattern (21 bp):
TCTTTTTTATTCTTTTTTTAT
Found at i:72002039 original size:3 final size:3
Alignment explanation
Indices: 72002033--72002063 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
72002023 ATTATTATCT
72002033 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
72002064 TCATTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:72002194 original size:31 final size:32
Alignment explanation
Indices: 72002138--72002199 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
72002128 TTATTTAAAG
*
72002138 TTTTATTAGTTTTATTTGTTTATTTACTTATT
1 TTTTATTAGTCTTATTTGTTTATTTACTTATT
* * *
72002170 TTTTATTA-TCTTGTTTTTTTATTTATTTAT
1 TTTTATTAGTCTTATTTGTTTATTTACTTAT
72002200 CTTATTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (32 bp):
TTTTATTAGTCTTATTTGTTTATTTACTTATT
Found at i:72002211 original size:20 final size:19
Alignment explanation
Indices: 72002149--72002242 Score: 61
Period size: 20 Copynumber: 4.9 Consensus size: 19
72002139 TTTATTAGTT
*
72002149 TTATTTGTTTAT-TTACTTA
1 TTATTTATTTATCTTA-TTA
* * *
72002168 TTTTTTA-TTATCTTGTTTTT
1 TTATTTATTTATC-T-TATTA
72002188 TTATTTATTTATCTTATTGA
1 TTATTTATTTATCTTATT-A
72002208 TTATTT-TTTACTCTTATTA
1 TTATTTATTTA-TCTTATTA
* *
72002227 TT-GTTATTTATATTAT
1 TTATTTATTTATCTTAT
72002243 CGCATTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
18 11 0.19
19 19 0.32
20 23 0.39
21 6 0.10
ACGTcount: A:0.20, C:0.05, G:0.04, T:0.70
Consensus pattern (19 bp):
TTATTTATTTATCTTATTA
Found at i:72009138 original size:19 final size:19
Alignment explanation
Indices: 72009114--72009160 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
72009104 AATGCCTCTT
*
72009114 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
72009133 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
72009152 TATGCATTA
1 TTTGCATTA
72009161 AACTTCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:72018615 original size:46 final size:45
Alignment explanation
Indices: 72018463--72018875 Score: 232
Period size: 47 Copynumber: 8.8 Consensus size: 45
72018453 TTATTTGTGT
* *
72018463 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCA-GATGAGA
* * * *
72018509 GCCAATGTAAGATCATGTCTGGGACATGGCATCGGCATTAAGATGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCAGATGAGA
* *
72018557 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGATG-AGA
* * *
72018603 GCCAGTGTAAGACATGCCTGGGACATGCATC-GGCTACA-A-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CAGATGA-GA
** * * ** *
72018647 GTTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCAGA--TGAGA
* * * * *
72018697 GCTAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCTC-GATTCCGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGA-T--GAGA
* * * *
72018746 GTCAGTGTAAGACCATGTCTGGGACATGGCATCA-ACT-TGATGGACAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGAT-GA-GA
* * *
72018793 GCCAGTGTAAGACCATGTTTGGGACATGGCATCA-ACT-TGATGGACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGAT-GA-GA
*
72018840 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
72018876 ATTATACCCT
Statistics
Matches: 298, Mismatches: 48, Indels: 40
0.77 0.12 0.10
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.04
45 17 0.06
46 59 0.20
47 110 0.37
48 30 0.10
49 34 0.11
50 33 0.11
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATGAGA
Found at i:72018706 original size:94 final size:93
Alignment explanation
Indices: 72018466--72018875 Score: 279
Period size: 94 Copynumber: 4.3 Consensus size: 93
72018456 TTTGTGTGCC
* * * *
72018466 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAT-TATGAGAGCCAATGTAAGATCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAAATATGTGAGAGCCAGTGTAAGACCATGTCTG
*
72018530 GGACATGGCATCGGCATTAAGATGAGAGCT
66 GGACAT-GCATCGGCATCAAGAT-AGAGCT
* ** * *
72018560 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGT-A-AGCCAGTGTAAGA-CATGCCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-AAATATGTGAGAGCCAGTGTAAGACCATGTCT
* *
72018622 GGGACATGCATCGGC-TACAAGAT-GTGTT
65 GGGACATGCATCGGCAT-CAAGATAGAGCT
* * * *
72018650 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGAGCTAGTGTAAAACCATGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CAAATATGTGAGAGCCAGTGTAAGACCATGT
* * * *
72018715 CTGGGACATGGCGTCGGCCTCGATTCCGATAG-TC-
63 CTGGGACAT-GCATCGGCATC-A---AGATAGAGCT
** *
72018749 AGTGTAAGACCATGTCTGGGACATGGCATCA---ACTTGATG-GACAAGCCAGTGTAAGACCATG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAAAT-ATGTGA-GAGCCAGTGTAAGACCATG
* ** * * * *
72018810 TTTGGGACATGGCATCAACTTGATGGA-CGAGCT
62 TCTGGGACAT-GCATCGGCATCA-AGATAGAGCT
72018843 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
72018876 ATTATACCCT
Statistics
Matches: 254, Mismatches: 40, Indels: 42
0.76 0.12 0.12
Matches are distributed among these distances:
90 12 0.05
91 14 0.06
92 25 0.10
93 18 0.07
94 85 0.33
95 20 0.08
96 45 0.18
97 2 0.01
99 29 0.11
100 3 0.01
101 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCAAATATGTGAGAGCCAGTGTAAGACCATGTCTG
GGACATGCATCGGCATCAAGATAGAGCT
Found at i:72019985 original size:21 final size:21
Alignment explanation
Indices: 72019959--72020018 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
72019949 TTATAATGAA
72019959 CACACGGGCGTGTTACCCTTT
1 CACACGGGCGTGTTACCCTTT
*
72019980 CACACGGGCATGTTACCCTTT
1 CACACGGGCGTGTTACCCTTT
*
72020001 CACACGGGTGTG-TACCCT
1 CACACGGGCGTGTTACCCT
72020019 ATTTCCAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
20 6 0.17
21 30 0.83
ACGTcount: A:0.17, C:0.33, G:0.23, T:0.27
Consensus pattern (21 bp):
CACACGGGCGTGTTACCCTTT
Found at i:72020786 original size:46 final size:47
Alignment explanation
Indices: 72020713--72020844 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 47
72020703 ATTAAAGCAG
* * * * *
72020713 CAAACCTTATCTCCTTGAAGTTGCAATGCAGCAGGTTAAAAATA-AA
1 CAAATCTTATCTCCCTGAAATTACAATGCAGCAGATTAAAAATAGAA
* *
72020759 CAAATCTTATCTCCCTGAAATTACAATGGAGCAGATTAAAAATAGGCTA
1 CAAATCTTATCTCCCTGAAATTACAATGCAGCAGATTAAAAATA-G-AA
* * * * *
72020808 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 CAAATCTTATCTCCCTGAAATTACAATGCAGCAGATT
72020845 GAAGATAGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
46 38 0.53
49 34 0.47
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (47 bp):
CAAATCTTATCTCCCTGAAATTACAATGCAGCAGATTAAAAATAGAA
Found at i:72020838 original size:49 final size:48
Alignment explanation
Indices: 72020668--72020979 Score: 218
Period size: 49 Copynumber: 6.7 Consensus size: 48
72020658 GCTACAGGTT
* * * * *
72020668 ACAAATCTTATCTCCCTAAAATTGCAGTGGAACAAATT---AA-AGCA
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
* * * * *
72020712 GCAAACCTTATCTCCTTGAAGTTGCAATGCAGCAGGTTAAAAATA--A
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
* * *
72020758 ACAAATCTTATCTCCCTGAAATTACAATGGAGCAGATTAAAAATAGGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATA-GCA
* * * * *
72020807 ACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATA-GCA
* ** ** * * *
72020856 ACAAATATTATCTCTTTGAAGTTTTAGTGGAGCAAATT---AA-AGCC
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
* * * *
72020900 ACAAACCTTATCTCTCTGAAGTTGCAGTGGAGCA-AGTTAAAATTA--A
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGA-TTAAAAATAGCA
**
72020946 ACAAATCTTATCTTTCTGAAGTTGCAATGGAGCA
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCA
72020980 TATTGAAGAC
Statistics
Matches: 213, Mismatches: 43, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.00
44 61 0.29
45 1 0.00
46 71 0.33
47 3 0.01
48 2 0.01
49 74 0.35
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (48 bp):
ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
Found at i:72022937 original size:47 final size:48
Alignment explanation
Indices: 72022869--72023089 Score: 217
Period size: 47 Copynumber: 4.7 Consensus size: 48
72022859 GTTATTGTGG
*
72022869 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATGAATATGAGA
* * * * * *
72022915 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGAATATGAGA
* * *
72022963 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATG-AGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATGAATATGAGA
* * *
72023009 GTTGAG-GTAAGACCATGTGTGGGACATGGCATCGACATGAGATAT-A-A
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGCCATGA-ATATGAGA
*
72023056 GCTAGTGTAAGACCGTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
72023090 GCACTTTACC
Statistics
Matches: 143, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
46 30 0.21
47 83 0.58
48 27 0.19
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGAATATGAGA
Found at i:72023032 original size:94 final size:93
Alignment explanation
Indices: 72022869--72023091 Score: 254
Period size: 94 Copynumber: 2.4 Consensus size: 93
72022859 GTTATTGTGG
* *
72022869 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCCAGTGTAAGACCATGTC
* *
72022934 TGGGACATGGCATCGGCATCA-AAACGAGT
66 TGGGACATGGCATCGACATCAGAAA-GA-A
* * **
72022963 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTTGAG-GTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATGATGAGAG-CCAGTGTAAGACCATG
* * * *
72023026 TGTGGGACATGGCATCGACATGAGATATAA
64 TCTGGGACATGGCATCGACATCAGAAAGAA
*
72023056 GCTAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
72023092 ACTTTACCCA
Statistics
Matches: 111, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
93 12 0.11
94 86 0.77
95 13 0.12
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGACATCAGAAAGAA
Found at i:72024198 original size:21 final size:21
Alignment explanation
Indices: 72024168--72024207 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
72024158 CCGTGTGAAC
* *
72024168 CACACGGGCGTGTGCCCCTTT
1 CACACAGGCGTGCGCCCCTTT
72024189 CACACAGGCGTGCGCCCCT
1 CACACAGGCGTGCGCCCCT
72024208 ATGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.42, G:0.28, T:0.17
Consensus pattern (21 bp):
CACACAGGCGTGCGCCCCTTT
Found at i:72025275 original size:3 final size:3
Alignment explanation
Indices: 72025269--72025297 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
72025259 GTTTATTTAC
72025269 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
72025298 TTCTAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:72025566 original size:20 final size:20
Alignment explanation
Indices: 72025541--72025578 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72025531 AGCTTGTTAT
72025541 TTATTTATTT-TTCTTATTGA
1 TTATTT-TTTGTTCTTATTGA
72025561 TTATTTTTTGTTCTTATT
1 TTATTTTTTGTTCTTATT
72025579 ATTGTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (20 bp):
TTATTTTTTGTTCTTATTGA
Found at i:72025959 original size:15 final size:16
Alignment explanation
Indices: 72025939--72025973 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
72025929 TTGTCATCTA
72025939 TTTT-AAAAATAATTT
1 TTTTAAAAAATAATTT
72025954 TTTTAAAAAATAATTT
1 TTTTAAAAAATAATTT
72025970 TTTT
1 TTTT
72025974 CGTATTTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTAAAAAATAATTT
Found at i:72034184 original size:16 final size:17
Alignment explanation
Indices: 72034144--72034187 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
72034134 AAATTAAAAA
72034144 ATATTTTTTATCTTTTT
1 ATATTTTTTATCTTTTT
72034161 ATACTTTTATTAT-TTTTT
1 ATA-TTTT-TTATCTTTTT
72034179 AT-TTTTTTA
1 ATATTTTTTA
72034188 AATTAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.12
16 4 0.16
17 3 0.12
18 11 0.44
19 4 0.16
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (17 bp):
ATATTTTTTATCTTTTT
Found at i:72035695 original size:31 final size:31
Alignment explanation
Indices: 72035657--72035719 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
72035647 AGGTTTAAAG
72035657 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
1 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
72035688 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
1 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
72035719 A
1 A
72035720 ATCTCAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (31 bp):
ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
Found at i:72037620 original size:17 final size:17
Alignment explanation
Indices: 72037598--72037632 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72037588 AATATTTGGT
72037598 AGTACAAAATTAGTCGA
1 AGTACAAAATTAGTCGA
72037615 AGTACAAAATTAGTCGA
1 AGTACAAAATTAGTCGA
72037632 A
1 A
72037633 AGCTCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (17 bp):
AGTACAAAATTAGTCGA
Found at i:72040755 original size:24 final size:23
Alignment explanation
Indices: 72040727--72040792 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 23
72040717 TGAGTTGTGG
*
72040727 TCTGAGTTCATGATGTATGTGGC
1 TCTGAGTTCATGATGTATATGGC
** * *
72040750 ATCTGAACTCATTAAGT-TATGGC
1 -TCTGAGTTCATGATGTATATGGC
72040773 -CTGAGTTCATGATGTATATG
1 TCTGAGTTCATGATGTATATG
72040793 ACACATGTTT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
21 11 0.34
22 4 0.12
23 5 0.16
24 12 0.38
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (23 bp):
TCTGAGTTCATGATGTATATGGC
Found at i:72040777 original size:45 final size:45
Alignment explanation
Indices: 72040704--72040789 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
72040694 GGAACTATGA
* * *
72040704 CATCAGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGG
1 CATCAGAACTCATTAAGTTATGGCCTGAGTTCATGATGTATGTGG
*
72040749 CATCTGAACTCATTAAGTTATGGCCTGAGTTCATGATGTAT
1 CATCAGAACTCATTAAGTTATGGCCTGAGTTCATGATGTAT
72040790 ATGACACATG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (45 bp):
CATCAGAACTCATTAAGTTATGGCCTGAGTTCATGATGTATGTGG
Found at i:72058026 original size:29 final size:29
Alignment explanation
Indices: 72057988--72058046 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
72057978 ATTTTTGATG
* * *
72057988 AATTTGATTATTATGGGA-TAAATTGTGAA
1 AATTAGATTA-TAAGGGACTAAAATGTGAA
72058017 AATTAGATTATAAGGGACTAAAATGTGAA
1 AATTAGATTATAAGGGACTAAAATGTGAA
72058046 A
1 A
72058047 TAAATGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (29 bp):
AATTAGATTATAAGGGACTAAAATGTGAA
Found at i:72058681 original size:43 final size:42
Alignment explanation
Indices: 72058551--72058685 Score: 141
Period size: 42 Copynumber: 3.1 Consensus size: 42
72058541 ATTTTGTGTG
*
72058551 AGACCACGTCTGGGAC-GTTGGCATCA-ATTTGAGATTTACATGTA
1 AGACCATGTCTGGGACAG-TGGCATCATA-TT-AGA-TTACATGTA
* * * *
72058595 AGACCATGTCTGGGACA-TCGACATCATATTTGATTTCGTGTA
1 AGACCATGTCTGGGACAGT-GGCATCATATTAGATTACATGTA
*
72058637 AGACCCTGTCTGGGACAGTGGCATCGATATTAGATTACATGTA
1 AGACCATGTCTGGGACAGTGGCATC-ATATTAGATTACATGTA
72058680 AGACCA
1 AGACCA
72058686 CGTTTGAGAC
Statistics
Matches: 75, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
42 28 0.37
43 23 0.31
44 23 0.31
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
AGACCATGTCTGGGACAGTGGCATCATATTAGATTACATGTA
Found at i:72058702 original size:43 final size:42
Alignment explanation
Indices: 72058551--72058703 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 42
72058541 ATTTTGTGTG
72058551 AGACCACGTCTGGGACGTTGGCATCA-ATTTGAGATTTACATGTA
1 AGACCACGTCTGGGACGTTGGCATCATA-TT-AGA-TTACATGTA
* * * * * * *
72058595 AGACCATGTCTGGGACATCGACATCATATTTGATTTCGTGTA
1 AGACCACGTCTGGGACGTTGGCATCATATTAGATTACATGTA
72058637 AGACC-CTGTCTGGGACAG-TGGCATCGATATTAGATTACATGTA
1 AGACCAC-GTCTGGGAC-GTTGGCATC-ATATTAGATTACATGTA
* *
72058680 AGACCACGTTTGAGACGTTGGCAT
1 AGACCACGTCTGGGACGTTGGCAT
72058704 TGTATGAGCT
Statistics
Matches: 87, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 27 0.31
43 34 0.39
44 25 0.29
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
AGACCACGTCTGGGACGTTGGCATCATATTAGATTACATGTA
Found at i:72061644 original size:21 final size:22
Alignment explanation
Indices: 72061603--72061648 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
72061593 ATGAATTTTA
* *
72061603 ATGCTTTATTATTATTATGAGT
1 ATGCTTGATTATTACTATGAGT
72061625 ATGCTTGATTATT-CTATGAGT
1 ATGCTTGATTATTACTATGAGT
72061646 ATG
1 ATG
72061649 TGATTGGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (22 bp):
ATGCTTGATTATTACTATGAGT
Found at i:72063530 original size:46 final size:46
Alignment explanation
Indices: 72063463--72063560 Score: 178
Period size: 46 Copynumber: 2.1 Consensus size: 46
72063453 AATTTGCATA
*
72063463 TGTATGAATGAAATTGATTTTGAATGAAATTTTTATGGCCCGATTT
1 TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGATTT
*
72063509 TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTT
1 TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGATTT
72063555 TGTATG
1 TGTATG
72063561 TGTGCTTGTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (46 bp):
TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGATTT
Found at i:72067188 original size:19 final size:19
Alignment explanation
Indices: 72067166--72067208 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
72067156 GTGTACGAAG
*
72067166 ATGCACTTCGTGTGCCAGT
1 ATGCACTTCGTGTGCCAAT
* *
72067185 ATGCACTTTGTGTGTCAAT
1 ATGCACTTCGTGTGCCAAT
72067204 ATGCA
1 ATGCA
72067209 TTATATGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (19 bp):
ATGCACTTCGTGTGCCAAT
Found at i:72071571 original size:21 final size:21
Alignment explanation
Indices: 72071540--72071620 Score: 146
Period size: 21 Copynumber: 3.9 Consensus size: 21
72071530 TCTTTAAAAC
72071540 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
72071560 AGGGCAACACGCCAGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
72071581 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
72071602 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
72071621 ACCATCTAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
20 5 0.09
21 53 0.91
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:72075724 original size:39 final size:39
Alignment explanation
Indices: 72075670--72075828 Score: 282
Period size: 39 Copynumber: 4.1 Consensus size: 39
72075660 ATTATATTAG
* *
72075670 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72075709 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72075748 CAGCACGAAGCCTGCGGGACTTGAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
72075787 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
72075826 CAG
1 CAG
72075829 TGTCTTGCAT
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:72093444 original size:24 final size:24
Alignment explanation
Indices: 72093417--72093487 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
72093407 ATCATAGAAA
72093417 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
72093441 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
72093465 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
72093488 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:72093508 original size:26 final size:24
Alignment explanation
Indices: 72093427--72093497 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
72093417 GTGTACATTG
* * * *
72093427 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
72093451 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
72093475 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
72093498 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:72098175 original size:22 final size:22
Alignment explanation
Indices: 72098149--72098193 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
72098139 ATTATGTGTA
*
72098149 TTAATTCATAATTTAA-TTAATT
1 TTAATTCAT-ATCTAATTTAATT
*
72098171 TTAATTTATATCTAATTTAATT
1 TTAATTCATATCTAATTTAATT
72098193 T
1 T
72098194 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTCATATCTAATTTAATT
Found at i:72100651 original size:51 final size:51
Alignment explanation
Indices: 72100575--72100678 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
72100565 CTGCTAATGG
72100575 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
1 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
72100626 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
1 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
72100677 TG
1 TG
72100679 CCAGCAACAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (51 bp):
TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
Found at i:72108145 original size:43 final size:43
Alignment explanation
Indices: 72108083--72108244 Score: 245
Period size: 43 Copynumber: 3.8 Consensus size: 43
72108073 GTACCATTCA
* *
72108083 GGCTTCGAGCCTAGCAGGCTATAATTCCGGTGAAATAATATCA
1 GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
* *
72108126 TGCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATAATATCG
1 GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
* *
72108169 GGCCTCAAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
1 GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
* *
72108212 GGCTTCGAGCCTAGTAGGCGA-AATGCCGGTGAA
1 GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
72108245 TGAATTCAGA
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 12 0.11
43 95 0.89
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (43 bp):
GGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
Found at i:72109342 original size:32 final size:32
Alignment explanation
Indices: 72109301--72109366 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
72109291 GCAGCTTGCA
72109301 CGCTGCTGCCTCCTCTTGTGCCCATCCGGCCG
1 CGCTGCTGCCTCCTCTTGTGCCCATCCGGCCG
72109333 CGCTGCTGCCTCCTCTTGTGCCCATCCGGCCG
1 CGCTGCTGCCTCCTCTTGTGCCCATCCGGCCG
72109365 CG
1 CG
72109367 AACTCCAGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.03, C:0.47, G:0.26, T:0.24
Consensus pattern (32 bp):
CGCTGCTGCCTCCTCTTGTGCCCATCCGGCCG
Found at i:72109554 original size:25 final size:25
Alignment explanation
Indices: 72109525--72109580 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
72109515 TTTCTCCTAA
*
72109525 ATTTTAATTTTATTTAATAATTTAAT
1 ATTTTAAGTTTATTTAATAA-TTAAT
* *
72109551 -TTTTCAGTTTATTTAATTATTAAT
1 ATTTTAAGTTTATTTAATAATTAAT
72109575 ATTTTA
1 ATTTTA
72109581 TATTAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
ATTTTAAGTTTATTTAATAATTAAT
Done.