Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 213 of 373
Found at i:72688283 original size:51 final size:53
Alignment explanation
Indices: 72688172--72688312 Score: 159
Period size: 51 Copynumber: 2.7 Consensus size: 53
72688162 TACATACCCA
* * *
72688172 GTAGCTTCGATCACATGTGTGGTACTAAGTGCAA-GCCACTATGTGTAAGAGAT
1 GTAGCTTTGATCACAAGTGTGGTACTATGTG-AAGGCCACTATGTGTAAGAGAT
* *
72688225 G-A-TTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGA-AT
1 GTAGCTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAAGAGAT
* *
72688274 GTAGCTTTGA-CTACAAGGGTGGTACTATGTGCAGGCCAC
1 GTAGCTTTGATC-ACAAGTGTGGTACTATGTGAAGGCCAC
72688313 GGGTATCCGT
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
49 3 0.04
50 8 0.11
51 63 0.83
52 1 0.01
53 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
GTAGCTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTATGTGTAAGAGAT
Found at i:72693841 original size:52 final size:50
Alignment explanation
Indices: 72693763--72693896 Score: 144
Period size: 52 Copynumber: 2.6 Consensus size: 50
72693753 GTTGTGAGAA
* * ***
72693763 CACATGTGAAGTACTATGT-TCAGGCTACTATGTGTTTAAAATGGCTTTAGGT
1 CACATGTGTAGTACTAAGTGT-AGGCTACTATGTGCACAAAATGG--TTAGGT
* *
72693815 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGCACCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGCACAAAATGGTTAGGT
* * *
72693865 CGCATGTGTAGTACTAATTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGTAGGCTACTATG
72693897 CGTAACCCGA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
50 34 0.49
52 35 0.50
53 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGTAGGCTACTATGTGCACAAAATGGTTAGGT
Found at i:72699379 original size:26 final size:26
Alignment explanation
Indices: 72699350--72699431 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
72699340 TTCGATCACG
72699350 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGTAGGCTACTA
* * *
72699376 --TGT-GTACCAGATTGATAGG-T-CGCA
1 TGTGTAGTACTA-AGTG-TAGGCTAC-TA
*
72699400 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGTAGGCTACTA
72699426 TGTGTA
1 TGTGTA
72699432 CCCGTTAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
23 6 0.15
24 8 0.20
25 7 0.17
26 14 0.34
27 6 0.15
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGTAGGCTACTA
Found at i:72699421 original size:50 final size:51
Alignment explanation
Indices: 72699243--72699587 Score: 312
Period size: 51 Copynumber: 6.8 Consensus size: 51
72699233 CCGTTCTGCG
* * * *
72699243 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTAAC-TAGA
* * * *
72699294 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTAAC-TAGA
* * *
72699345 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGA-TAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTAACTAGA
* * * *
72699395 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCG-TTAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTAAC-TAGA
** * *
72699446 TCACGTGTGTAGTACTAAGTAG-AGGCTACTACATGTATCAGATGGTTA--AG-
1 TCACGTGTGTAGTACTAAGT-GCAGGCTACTATGTGTACCAGAT--TAACTAGA
** * * *
72699496 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGGTTGA-TAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTAACTAGA
** * **
72699546 TTGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
72699588 CAACTTCGGT
Statistics
Matches: 253, Mismatches: 31, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
48 2 0.01
49 6 0.02
50 114 0.45
51 123 0.49
52 6 0.02
54 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTAACTAGA
Found at i:72699440 original size:101 final size:100
Alignment explanation
Indices: 72699243--72699526 Score: 354
Period size: 101 Copynumber: 2.8 Consensus size: 100
72699233 CCGTTCTGCG
* * * * * *
72699243 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCGATCACGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTG-AGGCTACTATGTGTACCAGATTGA--TAGGTCACGTGTGTAGT
*
72699307 GCTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
63 ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
* *
72699345 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTG-AGGCTACTATGTGTACCAGATTGATAGGTCACGTGTGTAGTAC
* * *
72699410 TAAGTGCAGGCTACTATGTGTACCCGTTAACTTTGA
65 TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
** * * * *
72699446 TCACGTGTGTAGTACTAAGTAGAGGCTACTACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGT-GAGGCTACTATGTGTACCAGATTGATAGGTCACGTGTGTAGTAC
72699511 TAAGTGCAGGCTACTA
65 TAAGTGCAGGCTACTA
72699527 CATGTACCAG
Statistics
Matches: 159, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
101 118 0.74
102 37 0.23
103 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGAGGCTACTATGTGTACCAGATTGATAGGTCACGTGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
Found at i:72715691 original size:47 final size:47
Alignment explanation
Indices: 72715622--72716169 Score: 873
Period size: 47 Copynumber: 11.5 Consensus size: 47
72715612 CTTCGGGACA
* * * * *
72715622 TATCACAGT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACA-TATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
*
72715669 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
72715716 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
*
72715763 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
* *
72715812 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
* *
72715859 TATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
*
72715906 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
*
72715955 TATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
*
72716002 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
*
72716049 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
* *
72716098 TATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
72716145 TATCACATATATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
72716170 TATTCAAATA
Statistics
Matches: 471, Mismatches: 23, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 335 0.71
49 135 0.29
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
Found at i:72715816 original size:96 final size:94
Alignment explanation
Indices: 72715622--72716169 Score: 882
Period size: 96 Copynumber: 5.8 Consensus size: 94
72715612 CTTCGGGACA
* * * * * *
72715622 TATCACAGT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACT
1 TATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
72715686 TTCACATTCATCACATTGGCCATTCGGCCT
65 TTCACATTCATCACATTGGCCATTCGGCCT
*
72715716 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
72715781 TTTCACATTCATCACATTGGCCATTCGGCCT
64 TTTCACATTCATCACATTGGCCATTCGGCCT
*
72715812 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
* * *
72715877 CCACATTCATCACATCGGCCATTAGGCCT
66 TCACATTCATCACATTGGCCATTCGGCCT
* *
72715906 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
72715971 TTTCACATTCATCACATTGGCTATTAGGCCT
64 TTTCACATTCATCACATTGGCCATTCGGCCT
72716002 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
72716067 TTTCACATTCATCACATTGGCCATTCGGCCT
64 TTTCACATTCATCACATTGGCCATTCGGCCT
*
72716098 TATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
72716163 TCACATT
66 TCACATT
72716170 TATTCAAATA
Statistics
Matches: 426, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 154 0.36
96 271 0.64
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (94 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATTGGCCATTCGGCCT
Found at i:72715889 original size:143 final size:143
Alignment explanation
Indices: 72715631--72716169 Score: 972
Period size: 143 Copynumber: 3.8 Consensus size: 143
72715621 ATATCACAGT
* * * *
72715631 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
* * * *
72715696 TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
66 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72715761 CTTATCACATATA
131 CTTATCACATATA
72715774 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
*
72715839 TCACATCGGCTATTAGGCCTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72715904 CTTATCACATATA
131 CTTATCACATATA
72715917 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
*
72715982 TCACATTGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72716047 CTTATCACATATA
131 CTTATCACATATA
72716060 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
72716125 TCACATCGG-TCATTAGGCCTTATCACATATATACACTTTCACATT
66 TCACATCGGCT-ATTAGGCCTTATCACATATATACACTTTCACATT
72716170 TATTCAAATA
Statistics
Matches: 383, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
142 1 0.00
143 382 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATA
Found at i:72720284 original size:40 final size:40
Alignment explanation
Indices: 72720208--72720612 Score: 666
Period size: 40 Copynumber: 10.1 Consensus size: 40
72720198 CAAATACACG
* * *
72720208 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
72720248 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
72720288 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
72720328 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
72720368 TCATTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
72720408 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
72720448 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
72720488 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
*
72720528 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
72720568 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
72720608 TCACT
1 TCACT
72720613 CTCAATTCTC
Statistics
Matches: 336, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 336 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:72723796 original size:27 final size:27
Alignment explanation
Indices: 72723766--72723834 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
72723756 TAAATTGTAC
* *
72723766 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTACAT
*
72723793 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTACAT
*
72723820 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72723835 GACTCAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTACAT
Found at i:72731835 original size:27 final size:27
Alignment explanation
Indices: 72731804--72731981 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72731794 TAAATTGTGC
72731804 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72731831 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72731857 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72731885 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72731913 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72731940 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72731967 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72731982 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72731918 original size:82 final size:81
Alignment explanation
Indices: 72731805--72731960 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72731795 AAATTGTGCA
* *
72731805 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72731869 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72731886 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72731951 TGCGAGTTGA
65 TGCGAATTGA
72731961 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72731972 original size:82 final size:81
Alignment explanation
Indices: 72731803--72731981 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
72731793 TTAAATTGTG
* *
72731803 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
72731868 GTGCGAATTGACCATG
66 GTGCGAATTGACCATA
* ** *
72731884 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAA
1 CAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
* **
72731948 GTGTGCGAGTTGATTATA
64 GTGTGCGAATTGACCATA
* *
72731966 TAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
72731982 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATA
Found at i:72736965 original size:12 final size:12
Alignment explanation
Indices: 72736934--72736987 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
72736924 AGAAAATTTG
72736934 GAACAAATGC-A
1 GAACAAATGCAA
*
72736945 GAAAGAAATGCAA
1 G-AACAAATGCAA
72736958 GAACAAATGCAA
1 GAACAAATGCAA
* *
72736970 GCACAAGTGCAA
1 GAACAAATGCAA
*
72736982 GCACAA
1 GAACAA
72736988 CTAGCTAACC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
11 1 0.03
12 34 0.92
13 2 0.05
ACGTcount: A:0.54, C:0.19, G:0.20, T:0.07
Consensus pattern (12 bp):
GAACAAATGCAA
Found at i:72739378 original size:26 final size:26
Alignment explanation
Indices: 72739348--72739406 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
72739338 AGCTCTGCAA
* *
72739348 ATTACTACCAGATGCAAAGGGTATAC
1 ATTACCACCAGATGCAAAGGGTACAC
72739374 ATTACCACCAGATGCAAAGGGTACAC
1 ATTACCACCAGATGCAAAGGGTACAC
72739400 ATTACCA
1 ATTACCA
72739407 GGAGTCTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (26 bp):
ATTACCACCAGATGCAAAGGGTACAC
Found at i:72745833 original size:177 final size:176
Alignment explanation
Indices: 72745358--72745839 Score: 671
Period size: 177 Copynumber: 2.7 Consensus size: 176
72745348 CGGTGAAGTC
*
72745358 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCGAATCTTATCTTCCCAAGGTA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCAAGGTA
*
72745423 GTAGGGGAGAAAATTTTAGCCACTAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAAAT
66 GTAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAA-GTAGCAAGAGAGCAGGTTGAAAAT
72745488 TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTGT
130 TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTGT
** * *
72745535 AGATCTCGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCAAGGTA
* * * * * * *
72745600 GCAGGGGAGGAGATTTTAGCCACCAGCCTTATCTCTCTATGGTAACAAGAGAGCAGGTTTAAGAT
66 GTAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTA-AGTAGCAAGAGAGCAGGTTGAAAAT
* *
72745665 TGTAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAGGATTGT
130 TGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTGT
** *
72745712 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGTAAAAT-TTATCTTCCCAATGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGG-CGAATCTTATCTTCCCAAGGT
** * ** * * *
72745776 AGTAAAGGAGAATATTCAAGCCACCAGCCTTATCTCCCTGAAGTTGC-AGTGGAGCAGGTTGAAA
65 AGTAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCT-AAGTAGCAAG-AGAGCAGGTTGAAA
72745840 TCATCAGCTT
Statistics
Matches: 265, Mismatches: 36, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
176 2 0.01
177 259 0.98
178 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (176 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCAAGGTA
GTAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGTAGCAAGAGAGCAGGTTGAAAATT
GTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAGGATTGT
Found at i:72747443 original size:13 final size:13
Alignment explanation
Indices: 72747425--72747454 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
72747415 ATTATTCATT
*
72747425 TTTTAACATATTA
1 TTTTAACATAGTA
72747438 TTTTAACATAGTA
1 TTTTAACATAGTA
72747451 TTTT
1 TTTT
72747455 GAACTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (13 bp):
TTTTAACATAGTA
Found at i:72748144 original size:22 final size:22
Alignment explanation
Indices: 72748100--72748148 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
72748090 TTAAACTTTA
72748100 TATTTTACATATTATTTATTTT
1 TATTTTACATATTATTTATTTT
72748122 TATTTT-CAT-TTATTTTATGTTT
1 TATTTTACATATTA-TTTAT-TTT
72748144 TATTT
1 TATTT
72748149 CAAATATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.12
21 8 0.32
22 14 0.56
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (22 bp):
TATTTTACATATTATTTATTTT
Found at i:72748148 original size:16 final size:16
Alignment explanation
Indices: 72748111--72748148 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
72748101 ATTTTACATA
72748111 TTATTTATTTTTATTT
1 TTATTTATTTTTATTT
*
72748127 TCATTTA-TTTTATGTT
1 TTATTTATTTTTAT-TT
72748143 TTATTT
1 TTATTT
72748149 CAAATATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TTATTTATTTTTATTT
Found at i:72748156 original size:21 final size:21
Alignment explanation
Indices: 72748114--72748157 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
72748104 TTACATATTA
**
72748114 TTTATTTTTATTTTCATTTAT
1 TTTATTTTTATTTTCAAATAT
72748135 TTTATGTTTTA-TTTCAAATAT
1 TTTAT-TTTTATTTTCAAATAT
72748156 TT
1 TT
72748158 CGCGAGTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTATTTTTATTTTCAAATAT
Found at i:72749771 original size:16 final size:16
Alignment explanation
Indices: 72749752--72749784 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
72749742 TGAACCCGTT
72749752 CTTTTAAGTCTATTTA
1 CTTTTAAGTCTATTTA
72749768 CTTTTAAGTCTATTTA
1 CTTTTAAGTCTATTTA
72749784 C
1 C
72749785 ATATAGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.55
Consensus pattern (16 bp):
CTTTTAAGTCTATTTA
Found at i:72758764 original size:39 final size:39
Alignment explanation
Indices: 72758710--72758892 Score: 208
Period size: 39 Copynumber: 4.7 Consensus size: 39
72758700 TGTGATGAAG
* *
72758710 TATATCCGGACTTAAGGTCTGCAGGCTATGTGCTAGAAT
1 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
*
72758749 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
* * *
72758788 TATATCC-GAACCTAAGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCAG-ACTTAAGGTCCGCAGGCTATGTGCTAGAAT
* * * * *
72758827 TATAACCGGACTTAAGGTCCGCAGGCTACGTACTAGAAA
1 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
* * *
72758866 TATGTCCAGGC-TAAAGTCCCGCAGGCT
1 TATATCCAGACTTAAGGT-CCGCAGGCT
72758893 TCGAGCTGGT
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
38 6 0.05
39 117 0.94
40 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (39 bp):
TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
Found at i:72758804 original size:78 final size:78
Alignment explanation
Indices: 72758710--72758854 Score: 245
Period size: 78 Copynumber: 1.9 Consensus size: 78
72758700 TGTGATGAAG
* * *
72758710 TATATCCGGACTTAAGGTCTGCAGGCTATGTGCTAGAATTATATCCAGACTTAAGGTCCGCAGGC
1 TATATCCGAACCTAAGGTCTGCAGGCTATGTGCTAGAATTATAACCAGACTTAAGGTCCGCAGGC
72758775 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* *
72758788 TATATCCGAACCTAAGGTCTGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGC
1 TATATCCGAACCTAAGGTCTGCAGGCTATGTGCTAGAATTATAACCAGACTTAAGGTCCGCAGGC
72758853 TA
66 TA
72758855 CGTACTAGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (78 bp):
TATATCCGAACCTAAGGTCTGCAGGCTATGTGCTAGAATTATAACCAGACTTAAGGTCCGCAGGC
TATGTGCTGGAAT
Found at i:72762808 original size:5 final size:5
Alignment explanation
Indices: 72762800--72762829 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
72762790 GAAATTTTGC
72762800 AATAA AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA
72762830 TTTAATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:72767337 original size:29 final size:28
Alignment explanation
Indices: 72767301--72767373 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
72767291 TCATGAGATT
* *
72767301 GGCACTAAGTGTGTGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
72767331 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
72767358 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
72767374 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:72767596 original size:174 final size:174
Alignment explanation
Indices: 72767331--72767658 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
72767321 AAATTGTACA
*
72767331 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
72767396 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
72767461 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
72767505 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
72767570 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
72767635 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
72767659 AGCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:72785764 original size:28 final size:29
Alignment explanation
Indices: 72785724--72785794 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
72785714 ATAGTAAGTC
*
72785724 CGCACACTTAGTGCT-TA-ATAATCAAACT
1 CGCACACTTAGTGCTATACA-AATCAAAAT
* *
72785752 CGCACACTTAGTGCTATACAATTTAAAAT
1 CGCACACTTAGTGCTATACAAATCAAAAT
72785781 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72785795 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.39
29 22 0.58
30 1 0.03
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAAATCAAAAT
Found at i:72789092 original size:27 final size:27
Alignment explanation
Indices: 72789061--72789238 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72789051 TAAATTGTAC
72789061 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72789088 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72789114 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72789142 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72789170 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72789197 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72789224 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72789239 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72789175 original size:82 final size:81
Alignment explanation
Indices: 72789062--72789217 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72789052 AAATTGTACA
* *
72789062 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72789126 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72789143 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72789208 TGCGAGTTGA
65 TGCGAATTGA
72789218 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72789229 original size:82 final size:81
Alignment explanation
Indices: 72789058--72789238 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72789048 GATTAAATTG
* *
72789058 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72789123 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72789139 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72789203 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72789221 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72789239 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72797199 original size:27 final size:27
Alignment explanation
Indices: 72797168--72797345 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72797158 TAAATTGTAC
72797168 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72797195 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72797221 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72797249 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72797277 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72797304 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72797331 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72797346 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72797282 original size:82 final size:81
Alignment explanation
Indices: 72797169--72797324 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72797159 AAATTGTACA
* *
72797169 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72797233 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72797250 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72797315 TGCGAGTTGA
65 TGCGAATTGA
72797325 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72797336 original size:82 final size:81
Alignment explanation
Indices: 72797165--72797345 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72797155 GATTAAATTG
* *
72797165 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72797230 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72797246 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72797310 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72797328 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72797346 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72801283 original size:6 final size:6
Alignment explanation
Indices: 72801265--72801383 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
72801255 AAGAAACATT
* *
72801265 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACA-A ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
72801313 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
72801364 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
72801384 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 26
0.70 0.10 0.21
Matches are distributed among these distances:
5 8 0.09
6 64 0.73
7 14 0.16
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:72801339 original size:19 final size:19
Alignment explanation
Indices: 72801315--72801372 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
72801305 AAATCAGAAT
72801315 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
72801334 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
72801346 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
72801365 CAGAATCA
1 CAGAATCA
72801373 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:72801347 original size:31 final size:31
Alignment explanation
Indices: 72801274--72801383 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
72801264 TATCAGAACT
* * * *
72801274 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
72801305 A-AATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
72801335 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
72801366 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
72801384 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
30 27 0.37
31 35 0.48
32 11 0.15
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:72801562 original size:27 final size:26
Alignment explanation
Indices: 72801521--72801621 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 26
72801511 CTCAGTTATC
* *
72801521 AGATATTGTGACAGAGTCACCAGATAT
1 AGATATTGTGGCAGAGCCACCAGA-AT
*
72801548 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAT
* *
72801574 AGATATTTGTGGTATAGCCACCAGAAAT
1 AGATA-TTGTGGCAGAGCCACCAG-AAT
* *
72801602 AGATAATGTGGCAAAGCCAC
1 AGATATTGTGGCAGAGCCAC
72801622 TTAACAGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.10
27 50 0.79
28 7 0.11
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAT
Found at i:72801814 original size:22 final size:22
Alignment explanation
Indices: 72801780--72801843 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
72801770 GCAAATACGT
*
72801780 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
72801802 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
72801824 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
72801844 AAAGGCTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:72802329 original size:27 final size:27
Alignment explanation
Indices: 72802271--72802438 Score: 229
Period size: 27 Copynumber: 6.3 Consensus size: 27
72802261 GAGGCAAAAT
* * * *
72802271 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72802297 GGTAATTCCACCCTACAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
*
72802324 GATAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72802350 GGTAATTCTACCCTAC-GGAGGTATTTC
1 GGTAATTCTACCCTACAGG-GGTATTTC
72802377 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72802404 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72802431 GGT-ATTCT
1 GGTAATTCT
72802439 GGTAATTTTG
Statistics
Matches: 128, Mismatches: 8, Indels: 12
0.86 0.05 0.08
Matches are distributed among these distances:
25 1 0.01
26 44 0.34
27 80 0.62
28 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:72802410 original size:80 final size:80
Alignment explanation
Indices: 72802271--72802438 Score: 243
Period size: 80 Copynumber: 2.1 Consensus size: 80
72802261 GAGGCAAAAT
*
72802271 GGTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTGTGATAATTCTA-C
1 GGTAATTCTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTGTGATAATTCTACC
72802335 CTACAGGGGTATTTC
66 CTACAGGGGTATTTC
* * * * *
72802350 GGTAATTCTACCCTACGGAGGTATTTCGGTAATTCTACCCTACAGGGGTATT-TCGGTAATTCTA
1 GGTAATTCTACCCCAC-AAGGTATCTCGGTAATTCCACCCTACAGGGGTATTGT-GATAATTCTA
72802414 CCCTACAGGGGTATTTC
64 CCCTACAGGGGTATTTC
72802431 GGT-ATTCT
1 GGTAATTCT
72802439 GGTAATTTTG
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
79 15 0.19
80 46 0.57
81 19 0.24
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (80 bp):
GGTAATTCTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTGTGATAATTCTACC
CTACAGGGGTATTTC
Found at i:72802525 original size:27 final size:27
Alignment explanation
Indices: 72802495--72802586 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
72802485 GGTACTTTGG
72802495 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
72802522 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * ***
72802549 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAGTCGA-GGGTATTTCAA
72802576 TAATTTTACAA
1 TAATTTTACAA
72802587 ACTAGGGGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:72802569 original size:81 final size:80
Alignment explanation
Indices: 72802479--72802924 Score: 331
Period size: 81 Copynumber: 5.5 Consensus size: 80
72802469 AATTCTATAG
* * * * **
72802479 ATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAGTC-GAGGGTA
1 ATCAGGGGTATTTTGGTAATTTTACAAG-CAAGGGTATTTTAATAATTTTACAAACCAG-GGGTA
72802543 TTTCAATAATTTCACAA
64 TTTCAATAATTTCACAA
* * * *
72802560 ATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGCAAACCAGGGGTAT
1 ATCAGGGGTATTTTGGTAATTTTACAAGC-AAGGGTATTTTAATAATTTTACAAACCAGGGGTAT
*** *
72802625 TTTGGTAATTTTACAA
65 TTCAATAATTTCACAA
* *
72802641 A-CTAGGGGTATTTTGGTAATTTTATAAAGCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTA
1 ATC-AGGGGTATTTTGGTAATTTTA-CAAGCAAGGGTATTTTAATAATTTTACAAACCAGGGGTA
*** ***
72802705 TTTTGGTAATTTTGTAA
64 TTTCAATAATTTCACAA
* ** * ** * * *
72802722 A-CTAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTA
1 ATC-AGGGGTATTTTGGTAATTTTAC-AAGCAAGGGTATTTTAATAATTTTACAAACCAGGGGTA
* * *
72802786 TTTTAGTAATTTTACAA
64 TTTCAATAATTTCACAA
* ** * **
72802803 ACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACCAGGGGTAT
1 ATCAGGGGTATTTTGGTAATTTTACAAGC-AAGGGTATTTTAATAATTTTACAAACCAGGGGTAT
*** * * *
72802868 TTTGGTGATTTTATAA
65 TTCAATAATTTCACAA
* * * * *
72802884 ACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
1 ATCAGGGGTATTTTGGTAATTTTACAAGC-AAGGGTATTTT
72802925 GGTAATTTGG
Statistics
Matches: 307, Mismatches: 51, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
80 4 0.01
81 298 0.97
82 5 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (80 bp):
ATCAGGGGTATTTTGGTAATTTTACAAGCAAGGGTATTTTAATAATTTTACAAACCAGGGGTATT
TCAATAATTTCACAA
Found at i:72802587 original size:27 final size:27
Alignment explanation
Indices: 72802549--72802932 Score: 507
Period size: 27 Copynumber: 14.2 Consensus size: 27
72802539 GGTATTTCAA
* *
72802549 TAATTTCACAAATCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
72802576 TAATTTTACAAACTAGGGGTATTTTGA
1 TAATTTTACAAACCAGGGGTATTTTGG
*
72802603 TAATTTTGCAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
72802630 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
72802657 TAATTTTATAAAGCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
72802684 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
** * *
72802711 TAATTTTGTAAACTAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
**
72802738 TAATTTTACAAATTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
72802765 TGATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
72802792 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
** * *
72802819 TAATTTTGTAAACTAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
72802846 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
72802873 TGATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
72802900 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
72802927 TAATTT
1 TAATTT
72802933 GGTAAACTAA
Statistics
Matches: 304, Mismatches: 53, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 304 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:72802623 original size:108 final size:108
Alignment explanation
Indices: 72802565--72802942 Score: 639
Period size: 108 Copynumber: 3.5 Consensus size: 108
72802555 CACAAATCAG
* * * * * *
72802565 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGCAAACCAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
*
72802630 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAGCAA
66 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
72802673 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
* *
72802738 TAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
66 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
72802781 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
* *
72802846 TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
66 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
72802889 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACTAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAA
72802943 AGTATTCTAA
Statistics
Matches: 257, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 257 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (108 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:72802939 original size:54 final size:54
Alignment explanation
Indices: 72802565--72802939 Score: 579
Period size: 54 Copynumber: 6.9 Consensus size: 54
72802555 CACAAATCAG
* * *
72802565 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
* *
72802619 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAGCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
* * *
72802673 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
* * *
72802727 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
* * *
72802781 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
* * *
72802835 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
* *
72802889 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAAC
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
72802940 TAAAGTATTC
Statistics
Matches: 290, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 290 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
Found at i:72805062 original size:46 final size:46
Alignment explanation
Indices: 72804990--72805118 Score: 138
Period size: 46 Copynumber: 2.8 Consensus size: 46
72804980 GGTGGTATGT
* *
72804990 GAGCCAGTGTAAGACATGTCTT-GGACATGCATCGGCCACAT-CATGA
1 GAGCTAGTGTAAGACATGT-TTGGGACATGCATCGGCCA-ATACACGA
* * * * *
72805036 GTGCTAGTGTAAGGCATGTTTGGGACATGCATCAG-CATTGAGACGA
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAAT-ACACGA
*
72805082 GAGCTAGTTTAAGACATGTTTGGGACATGCATCGGCC
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCC
72805119 TCAGGGTATA
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 4 0.06
46 62 0.91
47 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAATACACGA
Found at i:72805190 original size:49 final size:47
Alignment explanation
Indices: 72805130--72805306 Score: 160
Period size: 49 Copynumber: 3.7 Consensus size: 47
72805120 CAGGGTATAC
* *
72805130 AAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATA
1 AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGAC-TCGATAGATA
* * *
72805178 AGAGCCAGTGTAAGACTTGTCTAGGACATGGCATCGGTCTCGATAAATGA
1 A-AGCCAGTGTAAGACCTGTCTAGGACATGGCATC-GACTCGATAGAT-A
* * * * *
72805228 AAGTCAGTGTAAGACATGTTTAGGACACGACATCGACTTCGAT-G-TGA
1 AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGAC-TCGATAGAT-A
* * *
72805275 TAGCCAGTGTAAGACCATGTTTGGGACATGGC
1 AAGCCAGTGTAAGACC-TGTCTAGGACATGGC
72805307 GTAGGCATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
47 16 0.15
48 15 0.14
49 71 0.67
50 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGACTCGATAGATA
Found at i:72809676 original size:16 final size:16
Alignment explanation
Indices: 72809655--72809689 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
72809645 ATTTAGTCAT
72809655 ATAATAAATTATAAA-A
1 ATAATAAATT-TAAATA
72809671 ATAATAAATTTAAATA
1 ATAATAAATTTAAATA
72809687 ATA
1 ATA
72809690 TTATTCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAATAAATTTAAATA
Found at i:72809775 original size:19 final size:19
Alignment explanation
Indices: 72809723--72809777 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
72809713 TTCAATATTA
*
72809723 ATATTTTAATAATAAATAT
1 ATATATTAATAATAAATAT
*
72809742 -T-TATTACAATTATAAATAT
1 ATATATT--AATAATAAATAT
72809761 ATATATTAATAATAAAT
1 ATATATTAATAATAAAT
72809778 GTTTTGTAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
17 3 0.10
18 1 0.03
19 20 0.69
20 1 0.03
21 4 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATATTAATAATAAATAT
Found at i:72823073 original size:40 final size:40
Alignment explanation
Indices: 72823015--72823232 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
72823005 TGGATGATAA
* * *
72823015 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
72823055 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72823095 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72823135 CCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
72823175 CCGAGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
72823215 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72823233 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 144 0.91
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72827548 original size:40 final size:39
Alignment explanation
Indices: 72827474--72827698 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 39
72827464 AACCCAAGTA
* *
72827474 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
72827513 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
72827553 CCTTCGGGACTTAGCCCGGGTATAGCAGCTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCA-CTA---GCACAAATG
*
72827596 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * *
72827636 CCTTCGGGACTTAGCCCGGAGATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
72827676 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72827699 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
39 14 0.08
40 113 0.68
41 2 0.01
43 35 0.21
44 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:72827594 original size:83 final size:81
Alignment explanation
Indices: 72827474--72827698 Score: 350
Period size: 83 Copynumber: 2.8 Consensus size: 81
72827464 AACCCAAGTA
* * *
72827474 CCTTCGGGATTTAG-CCGGATATAGCA-ACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAGACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
72827537 GTCACTAGCACAAATG
66 GTCACTAGCACAAATG
*
72827553 CCTTCGGGACTTAGCCCGGGTATAGCAGCTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAG--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
72827618 TAGTCACTAGCACAAATG
64 TAGTCACTAGCACAAATG
*
72827636 CCTTCGGGACTTAGCCCGGAG-ATAGGA-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGG-GTATAGCAGACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
72827699 CATCCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
79 13 0.10
80 46 0.34
83 75 0.56
84 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGGTATAGCAGACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCACTAGCACAAATG
Found at i:72836085 original size:3 final size:3
Alignment explanation
Indices: 72836079--72836104 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
72836069 AAATGATGAA
72836079 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
72836105 CACATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:72838217 original size:56 final size:56
Alignment explanation
Indices: 72838099--72838222 Score: 167
Period size: 56 Copynumber: 2.2 Consensus size: 56
72838089 GTTTTACTTG
** * ** * *
72838099 CACACATATATTGGAGTCACATATCGATGCCAATGTATAAAACGTGGTCTTACTCG
1 CACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTCTTACTCA
*
72838155 TACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTCTTACTCA
1 CACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTCTTACTCA
*
72838211 CGCACATATATC
1 CACACATATATC
72838223 GATGCCATGG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.27
Consensus pattern (56 bp):
CACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTCTTACTCA
Found at i:72846201 original size:49 final size:50
Alignment explanation
Indices: 72846133--72846368 Score: 260
Period size: 49 Copynumber: 4.7 Consensus size: 50
72846123 AGGTCATGTT
* * *
72846133 TGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGGTCACATG
* * * * *
72846182 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-TTAGGTCACATG
* * ** *
72846233 TGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGGTCACATG
* ** *
72846283 TGTGGTACTAAGTGCAGGCTACTACATGTACCGGATAATT-GGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGGTCACATG
* * * *
72846332 TGTAGCACTAAGAGCAGGCTACTAAGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATA
72846369 GCTTTGGCTA
Statistics
Matches: 155, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 71 0.46
50 45 0.29
51 39 0.25
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGGTCACATG
Found at i:72846314 original size:101 final size:98
Alignment explanation
Indices: 72846133--72846368 Score: 274
Period size: 101 Copynumber: 2.4 Consensus size: 98
72846123 AGGTCATGTT
* * * *
72846133 TGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCA
** *
72846198 GGCTACTATGCGTACCCGATAACTTCGATCACGTG
66 GGCTACTACACGTACCCGATAA-TT-GATCACATG
* ** * *
72846233 TGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAGGTCACGTGTGTGGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT-GGTCACATGTGTAGTACTAAGTGC
* * * *
72846298 AGGCTACTACATGTACCGGATAATTGGTCGCATG
65 AGGCTACTACACGTACCCGATAATTGATCACATG
* * *
72846332 TGTAGCACTAAGAGCAGGCTACTAAGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
72846369 GCTTTGGCTA
Statistics
Matches: 114, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 38 0.33
100 36 0.32
101 40 0.35
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (98 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCA
GGCTACTACACGTACCCGATAATTGATCACATG
Found at i:72850252 original size:5 final size:5
Alignment explanation
Indices: 72850227--72850291 Score: 57
Period size: 5 Copynumber: 13.4 Consensus size: 5
72850217 TGATACGTGG
* * *
72850227 GATAT GATAT -ACAT GAT-T GATAT GATAT GCACAT GACAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
72850275 GCATAT GATAT G-TAT GA
1 G-ATAT GATAT GATAT GA
72850292 AGTGCACATG
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
4 14 0.28
5 27 0.54
6 9 0.18
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:72850262 original size:20 final size:19
Alignment explanation
Indices: 72850229--72850307 Score: 76
Period size: 20 Copynumber: 4.2 Consensus size: 19
72850219 ATACGTGGGA
72850229 TATGATAT--ACATGATTG
1 TATGATATGCACATGATTG
*
72850246 ATATGATATGCACATGACATG
1 -TATGATATGCACATGA-TTG
*
72850267 TATGATATGCATATGATATG
1 TATGATATGCACATGAT-TG
72850287 TATGA-AGTGCACATGA-TG
1 TATGATA-TGCACATGATTG
72850305 TAT
1 TAT
72850308 TCATAAATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 13 0.25
19 1 0.02
20 36 0.69
21 2 0.04
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (19 bp):
TATGATATGCACATGATTG
Found at i:72850281 original size:11 final size:11
Alignment explanation
Indices: 72850246--72850286 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
72850236 TACATGATTG
72850246 ATATGATATGC
1 ATATGATATGC
* *
72850257 ACATGACATG-
1 ATATGATATGC
72850267 -TATGATATGC
1 ATATGATATGC
72850277 ATATGATATG
1 ATATGATATG
72850287 TATGAAGTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
11 17 0.71
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (11 bp):
ATATGATATGC
Found at i:72850476 original size:25 final size:26
Alignment explanation
Indices: 72850353--72850501 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
72850343 AAGGAAGTGC
*
72850353 AAAAGTGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTACCG
* **
72850379 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCG
*
72850405 AAAAGGGCTTATGCCCTAGTTTACTG
1 AAAAGGGCTTATGCCCTAGTTTACCG
* *
72850431 AAAAGGGCTTATGCCTTAGTTTATCG
1 AAAAGGGCTTATGCCCTAGTTTACCG
*
72850457 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTACCG
72850482 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCTAGTT
72850502 ATTAAAAGAG
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 31 0.28
26 79 0.72
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTACCG
Found at i:72858338 original size:20 final size:19
Alignment explanation
Indices: 72858305--72858383 Score: 85
Period size: 20 Copynumber: 4.2 Consensus size: 19
72858295 ATACGTGGGC
72858305 TATGATAT--ACATGATTG
1 TATGATATGCACATGATTG
*
72858322 ATATGATATGCACATGACATG
1 -TATGATATGCACATGA-TTG
72858343 TATGATATGCACATGATATG
1 TATGATATGCACATGAT-TG
72858363 TATGA-AGTGCACATGA-TG
1 TATGATA-TGCACATGATTG
72858381 TAT
1 TAT
72858384 TCATAAATGC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
18 13 0.24
19 1 0.02
20 38 0.70
21 2 0.04
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.34
Consensus pattern (19 bp):
TATGATATGCACATGATTG
Found at i:72858552 original size:25 final size:26
Alignment explanation
Indices: 72858429--72858577 Score: 248
Period size: 26 Copynumber: 5.8 Consensus size: 26
72858419 GAGGAAGTGC
72858429 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
72858455 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
72858481 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
72858507 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
72858533 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
72858558 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
72858578 ATTAAAAGAG
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 34 0.29
26 83 0.71
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:72859935 original size:109 final size:110
Alignment explanation
Indices: 72859781--72859982 Score: 313
Period size: 109 Copynumber: 1.8 Consensus size: 110
72859771 ATCCTTTTGA
* * *
72859781 AACTTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-ATGAA-CTCACCA
1 AACTTATCAATACCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGA--AACCTCACCA
72859844 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
64 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
*
72859890 AACTTATCAATACCATGTCTTGACATGGTCTTACATGAT-TCCCTTGCCTTAGAAACCTTACCAA
1 AACTTATCAATACCATGTCTTGACATGGTCTTACATGATAT-CCTTGCCTTAGAAACCTCACCAA
72859954 TTGCCATGCCTTGGCATGGTCTTACATGG
65 TTGCCATGCCTTGGCATGGTCTTACATGG
72859983 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
108 3 0.04
109 53 0.62
110 29 0.34
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTATCAATACCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
Found at i:72859937 original size:55 final size:55
Alignment explanation
Indices: 72859781--72859983 Score: 209
Period size: 55 Copynumber: 3.7 Consensus size: 55
72859771 ATCCTTTTGA
* * *
72859781 AACTTATCATTGCCATGTCTTGACATGGTCTTACATGGTAT-CCTTGCCTTA-A-T
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGT-TCCCTTGCCTTATAGT
* * ** *
72859834 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTTCCCTTGCCTTATAGT
* * * * *
72859890 AACTTATCAATACCATGTCTTGACATGGTCTTACATGATTCCCTTGCC-T-TAGA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTTCCCTTGCCTTATAGT
*
72859943 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGT
72859984 ATCCTTAAAC
Statistics
Matches: 121, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
53 5 0.04
54 50 0.41
55 65 0.54
56 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (55 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTTCCCTTGCCTTATAGT
Found at i:72866491 original size:67 final size:64
Alignment explanation
Indices: 72866357--72866536 Score: 195
Period size: 67 Copynumber: 2.8 Consensus size: 64
72866347 AGTTCGGCTT
* * * * * *
72866357 TCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTAGCT
1 TCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCT
72866419 C
64 C
* * *
72866420 TCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCCGTAGC
1 TCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGC
72866485 TC
63 TC
* *
72866487 TCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 TCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
72866537 CATAATGTCT
Statistics
Matches: 98, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 14 0.14
64 29 0.30
66 23 0.23
67 31 0.32
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (64 bp):
TCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTC
Found at i:72870646 original size:16 final size:16
Alignment explanation
Indices: 72870622--72870652 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72870612 ATTCTTCACT
72870622 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
72870638 TACTTACTTACTTAA
1 TACTCACTTACTTAA
72870653 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:72870658 original size:20 final size:20
Alignment explanation
Indices: 72870619--72870658 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72870609 AAAATTCTTC
* *
72870619 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
72870639 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
72870659 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:72871035 original size:108 final size:110
Alignment explanation
Indices: 72870891--72871091 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
72870881 ATCCTTTTCA
* *
72870891 AACTTACCATTGCCATGTCTTGACATGGCCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGCCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
72870954 -TGCCATGCCTTGGCATGGTCCTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCCTACATGGGACCTTTGCCTTATAGT
* * * *
72870999 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGCCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
72871064 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCCTACATGG
72871092 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGCCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCCTACATGGGACCTTTGCCTTATAGT
Found at i:72871046 original size:55 final size:53
Alignment explanation
Indices: 72870891--72871098 Score: 215
Period size: 55 Copynumber: 3.8 Consensus size: 53
72870881 ATCCTTTTCA
* * *
72870891 AACTTACCATTGCCATGTCTTGACATGGCCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAG
* * * *
72870944 AACTCACCAATGCCATGCCTTGGCATGGTCCTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG
* * * *
72870998 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAG
*
72871052 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
72871099 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 9 0.07
55 70 0.55
56 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAG
Found at i:72874863 original size:56 final size:56
Alignment explanation
Indices: 72874797--72874986 Score: 254
Period size: 56 Copynumber: 3.4 Consensus size: 56
72874787 TCCCAGATAA
* * *
72874797 GGTCTTACTCGTAAACACATATTGGAATCACCTATTGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCAAACACATATTGGAATCACATATCGATGCCAACGTATTAAACGT
* ** * *
72874853 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCAAACACATATTGGAATCACATATCGATGCCAACGTATTAAACGT
* *
72874909 GGTCTTACTCGCACACACATATTGGAATCACATATCGATGCCAACGCATTAAACGT
1 GGTCTTACTCGCAAACACATATTGGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
72874965 AGCCTTACTCGTAATCACATAT
1 GGTCTTACTCGCAAACACATAT
72874987 CGATGGCAAC
Statistics
Matches: 116, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCAAACACATATTGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:72874997 original size:43 final size:43
Alignment explanation
Indices: 72874934--72875072 Score: 172
Period size: 43 Copynumber: 3.2 Consensus size: 43
72874924 CACATATTGG
** *
72874934 AATCACATATCGATGCCAACG-CATTAAACGTAGCCTTACTCGT
1 AATCACATATCGATGCCAACGTC-CCAAACGTAGCCTTACACGT
* * * *
72874977 AATCACATATCGATGGCAACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAAACGTAGCCTTACACGT
* * *
72875020 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAAACGTAGCCTTACACGT
72875063 AATCACATAT
1 AATCACATAT
72875073 TGGAAATCCT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 86 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCCAAACGTAGCCTTACACGT
Found at i:72883980 original size:33 final size:34
Alignment explanation
Indices: 72883942--72884012 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
72883932 TATGGGACTG
72883942 AGCCCATTT-AGCAACAGTAGCAGTCAGGGCCTA
1 AGCCCATTTCAGCAACAGTAGCAGTCAGGGCCTA
* *
72883975 AGCCCATTTCAGTAACAGTAGCAGTCTGGGCCTA
1 AGCCCATTTCAGCAACAGTAGCAGTCAGGGCCTA
72884009 AGCC
1 AGCC
72884013 TATTAACATA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 9 0.26
34 26 0.74
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (34 bp):
AGCCCATTTCAGCAACAGTAGCAGTCAGGGCCTA
Found at i:72888148 original size:29 final size:28
Alignment explanation
Indices: 72888086--72888175 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 28
72888076 TCTACATACA
* ***
72888086 TCATATGGCCTACTAGGCCCAATCTTTT
1 TCATATGGCCTATTAGGCCCAATCACAT
*
72888114 TCATATGGCCCATTAGGCCCAAATCACAT
1 TCATATGGCCTATTAGGCCC-AATCACAT
*
72888143 TCATATGGCTTATTAGGCCCAATCACAT
1 TCATATGGCCTATTAGGCCCAATCACAT
72888171 TCATA
1 TCATA
72888176 GTCATGCAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
28 31 0.57
29 23 0.43
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (28 bp):
TCATATGGCCTATTAGGCCCAATCACAT
Found at i:72894588 original size:27 final size:28
Alignment explanation
Indices: 72894546--72894601 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
72894536 GAGTAAGCAT
* *
72894546 AATTTGGGCCTAAG-CCATTTCGGTAAC
1 AATTAGGGCCTAAGCCCATTTCAGTAAC
*
72894573 AATTAGGGCCTTAGCCCATTTCAGTAAC
1 AATTAGGGCCTAAGCCCATTTCAGTAAC
72894601 A
1 A
72894602 GTAACAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (28 bp):
AATTAGGGCCTAAGCCCATTTCAGTAAC
Found at i:72894616 original size:34 final size:34
Alignment explanation
Indices: 72894568--72894694 Score: 150
Period size: 34 Copynumber: 3.7 Consensus size: 34
72894558 AGCCATTTCG
*
72894568 GTAACAAT-TAGGGCCTTAGCCCATTTCAGTAACA
1 GTAACAATCT-GGGCCTAAGCCCATTTCAGTAACA
* * *
72894602 GTAACAATTTGGGCCTAAGCCCATTTGAGTAACT
1 GTAACAATCTGGGCCTAAGCCCATTTCAGTAACA
* *
72894636 GCT-GCAGTCTGGGCCTAAGCCCATTTCAGTAACA
1 G-TAACAATCTGGGCCTAAGCCCATTTCAGTAACA
* *
72894670 GTAGCAACCTGGGCCTAAGCCCATT
1 GTAACAATCTGGGCCTAAGCCCATT
72894695 AACAAAGTAG
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
33 1 0.01
34 77 0.96
35 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (34 bp):
GTAACAATCTGGGCCTAAGCCCATTTCAGTAACA
Found at i:72897737 original size:56 final size:56
Alignment explanation
Indices: 72897653--72897825 Score: 249
Period size: 56 Copynumber: 3.1 Consensus size: 56
72897643 CATGGCATAG
* * * *
72897653 GATTCCGATATGTGATGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGT
1 GATTTCGATATATG-TGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
*
72897710 GATTTCGATATATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
1 GATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
* * *
72897766 GA-TTCTGATATATATGTGCGAGTAAGACCACGTCTAGTACGTTGGCATCGATATGT
1 GATTTC-GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
72897822 GATT
1 GATT
72897826 ACATGTAAGA
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
55 3 0.03
56 89 0.85
57 13 0.12
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
GATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
Found at i:72901963 original size:21 final size:21
Alignment explanation
Indices: 72901894--72901963 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 21
72901884 GGAACACTAA
*
72901894 ATTTTTATTACTTTA-GACATTT
1 ATTTTTATTA-TTTATTA-ATTT
* *
72901916 ATTTTTATTGCAATT-TTATTTT
1 ATTTTTATT--ATTTATTAATTT
72901938 A-TTTTATTATTTATTAATTT
1 ATTTTTATTATTTATTAATTT
72901958 ATTTTT
1 ATTTTT
72901964 TCTCTCTTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
19 3 0.08
20 7 0.18
21 11 0.29
22 13 0.34
23 3 0.08
24 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.67
Consensus pattern (21 bp):
ATTTTTATTATTTATTAATTT
Found at i:72907472 original size:42 final size:42
Alignment explanation
Indices: 72907426--72907548 Score: 102
Period size: 42 Copynumber: 3.1 Consensus size: 42
72907416 GTAACACGGC
72907426 CGTGCTTAAGGCCGTGTGTACCAACACGAACGAAAACATGGT
1 CGTGCTTAAGGCCGTGTGTACCAACACGAACGAAAACATGGT
* * * * **
72907468 CGTGCGATACGACCGTGCG-A--AA-AC--A-G-TTACA-GGT
1 CGTGC-TTAAGGCCGTGTGTACCAACACGAACGAAAACATGGT
* *
72907502 CATGCTTAAGGCCGTGTATACCAACACGAACGAAAACATGGT
1 CGTGCTTAAGGCCGTGTGTACCAACACGAACGAAAACATGGT
72907544 CGTGC
1 CGTGC
72907549 GATACGGCCG
Statistics
Matches: 56, Mismatches: 15, Indels: 20
0.62 0.16 0.22
Matches are distributed among these distances:
33 8 0.14
34 8 0.14
35 3 0.05
36 3 0.05
37 3 0.05
39 3 0.05
40 3 0.05
41 3 0.05
42 13 0.23
43 9 0.16
ACGTcount: A:0.31, C:0.24, G:0.26, T:0.19
Consensus pattern (42 bp):
CGTGCTTAAGGCCGTGTGTACCAACACGAACGAAAACATGGT
Found at i:72907554 original size:76 final size:76
Alignment explanation
Indices: 72907428--72907569 Score: 266
Period size: 76 Copynumber: 1.9 Consensus size: 76
72907418 AACACGGCCG
*
72907428 TGCTTAAGGCCGTGTGTACCAACACGAACGAAAACATGGTCGTGCGATACGACCGTGCGAAAACA
1 TGCTTAAGGCCGTGTATACCAACACGAACGAAAACATGGTCGTGCGATACGACCGTGCGAAAACA
72907493 GTTACAGGTCA
66 GTTACAGGTCA
*
72907504 TGCTTAAGGCCGTGTATACCAACACGAACGAAAACATGGTCGTGCGATACGGCCGTGCGAAAACA
1 TGCTTAAGGCCGTGTATACCAACACGAACGAAAACATGGTCGTGCGATACGACCGTGCGAAAACA
72907569 G
66 G
72907570 GGTAGCTGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 64 1.00
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.18
Consensus pattern (76 bp):
TGCTTAAGGCCGTGTATACCAACACGAACGAAAACATGGTCGTGCGATACGACCGTGCGAAAACA
GTTACAGGTCA
Found at i:72909692 original size:40 final size:40
Alignment explanation
Indices: 72909648--72909727 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
72909638 TTAAAACAAC
72909648 TCAAGTGATTTGAGTGAATCTTTAGTGACGATGTAAAAAT
1 TCAAGTGATTTGAGTGAATCTTTAGTGACGATGTAAAAAT
72909688 TCAAGTGATTTGAGTGAATCTTTAGTGACGATGTAAAAAT
1 TCAAGTGATTTGAGTGAATCTTTAGTGACGATGTAAAAAT
72909728 CGATGATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (40 bp):
TCAAGTGATTTGAGTGAATCTTTAGTGACGATGTAAAAAT
Found at i:72909714 original size:20 final size:20
Alignment explanation
Indices: 72909651--72909715 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
72909641 AAACAACTCA
72909651 AGTGATTTGAGTGAATCTTT
1 AGTGATTTGAGTGAATCTTT
* * ** *
72909671 AGTGA--CGATGTAAAAATTCA
1 AGTGATTTGA-GTGAATCTT-T
72909691 AGTGATTTGAGTGAATCTTT
1 AGTGATTTGAGTGAATCTTT
72909711 AGTGA
1 AGTGA
72909716 CGATGTAAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
18 2 0.06
19 6 0.19
20 15 0.48
21 6 0.19
22 2 0.06
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (20 bp):
AGTGATTTGAGTGAATCTTT
Found at i:72911720 original size:14 final size:13
Alignment explanation
Indices: 72911695--72911727 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
72911685 CATTTCAGAT
72911695 TCAGAT-TACAAA
1 TCAGATATACAAA
72911707 GTCAGATATACAAA
1 -TCAGATATACAAA
72911721 TCAGATA
1 TCAGATA
72911728 ATCGGAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.24
Consensus pattern (13 bp):
TCAGATATACAAA
Found at i:72920165 original size:27 final size:26
Alignment explanation
Indices: 72920117--72920176 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
72920107 ACAAGGCTGC
*
72920117 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
72920144 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
72920170 CAGATAT
1 CAGATAT
72920177 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72920189 original size:33 final size:32
Alignment explanation
Indices: 72920138--72920201 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
72920128 ACGAAGTCAC
* *
72920138 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
72920170 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
72920202 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:72920265 original size:27 final size:26
Alignment explanation
Indices: 72920217--72920268 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72920207 GCGAGGCTGC
*
72920217 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72920243 CAGATATATGTGGCGATGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72920269 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72923162 original size:27 final size:27
Alignment explanation
Indices: 72923132--72923472 Score: 427
Period size: 27 Copynumber: 12.7 Consensus size: 27
72923122 GCGTACCTGA
*
72923132 ACCCTGATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
*
72923159 ACCCTCATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* * *
72923186 ACCCTCATGTGATAAAATAATGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* * * *
72923213 ACCCTCATGAGATAAAAAGATGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
*
72923240 ACCCTTATGTGATAAAATGACGATTTC
1 ACCCTTATGTGATAAAATGACGATTTT
* *
72923267 AGCCTTATGTGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
72923294 -CCCTACATGTGATAAAATGTCGATTTT
1 ACCCT-TATGTGATAAAATGACGATTTT
*
72923321 ACCCTCTA--TGATAAAATGACAATTTT
1 ACCCT-TATGTGATAAAATGACGATTTT
*
72923347 ACCCTTATGTGATAAAATAACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
72923374 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
*
72923401 ACCATTATGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
** *
72923428 GTCCTTATGTGGTAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACGATTTT
* *
72923455 TCCCTTATGTGGTAAAAT
1 ACCCTTATGTGATAAAAT
72923473 AACTGAAATA
Statistics
Matches: 274, Mismatches: 36, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
25 2 0.01
26 24 0.09
27 243 0.89
28 5 0.02
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACGATTTT
Found at i:72923549 original size:27 final size:27
Alignment explanation
Indices: 72923465--72923583 Score: 98
Period size: 27 Copynumber: 4.4 Consensus size: 27
72923455 TCCCTTATGT
* * *
72923465 GGTAAAATAACTGAAATACCTTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
*
72923492 GGTAAAATGACCGAAATACCCTCATAA
1 GGTAAAATGACCGAAATACCCTCATAG
* * *
72923519 GGTATAATGTCCGAAATACCC-CTGTAG
1 GGTAAAATGACCGAAATACCCTC-ATAG
* * * * *
72923546 GGTAACATGACTGTAATACCC-CGGTAA
1 GGTAAAATGACCGAAATACCCTC-ATAG
72923573 GGTAAAATGAC
1 GGTAAAATGAC
72923584 AGATTTGTTC
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 74 0.99
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCTCATAG
Found at i:72923661 original size:23 final size:23
Alignment explanation
Indices: 72923618--72923667 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
72923608 CTGTATTTGA
72923618 GCATACCATGTTATATGTATGTT
1 GCATACCATGTTATATGTATGTT
72923641 GCAT-CCATGTATAATAT-TATGTT
1 GCATACCATGT-T-ATATGTATGTT
72923664 GCAT
1 GCAT
72923668 TACATGGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (23 bp):
GCATACCATGTTATATGTATGTT
Found at i:72923944 original size:18 final size:18
Alignment explanation
Indices: 72923923--72923972 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
72923913 CATACTGCAC
72923923 TGATTACTATTACTACAA
1 TGATTACTATTACTACAA
* ** * *
72923941 TGATCACGGTTACTAGAC
1 TGATTACTATTACTACAA
72923959 TGATTACTATTACT
1 TGATTACTATTACT
72923973 GAAAAGGGCT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (18 bp):
TGATTACTATTACTACAA
Found at i:72924076 original size:34 final size:34
Alignment explanation
Indices: 72923963--72924076 Score: 149
Period size: 34 Copynumber: 3.4 Consensus size: 34
72923953 CTAGACTGAT
72923963 TACTATTACTGAAAA-GGGCTAAAGCCCAGACTGC
1 TACTATTACT-AAAATGGGCTAAAGCCCAGACTGC
* *
72923997 TACTATTACTGAAATGGACTAAAGCCCAGACTGC
1 TACTATTACTAAAATGGGCTAAAGCCCAGACTGC
* * * *
72924031 TACTGTCACTAAAATGGGCTAAGGCCCAGACTAC
1 TACTATTACTAAAATGGGCTAAAGCCCAGACTGC
*
72924065 TACTGTTACTAA
1 TACTATTACTAA
72924077 TACGGGCTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
33 3 0.04
34 67 0.96
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (34 bp):
TACTATTACTAAAATGGGCTAAAGCCCAGACTGC
Found at i:72924094 original size:34 final size:34
Alignment explanation
Indices: 72923974--72924094 Score: 109
Period size: 34 Copynumber: 3.6 Consensus size: 34
72923964 ACTATTACTG
* * * *
72923974 AAAA-GGGCTAAAGCCCAGACTGCTACTATTACT
1 AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
* * * * *
72924007 GAAATGGACTAAAGCCCAGACTGCTACTGTCACT
1 AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
* *
72924041 AAAATGGGCTAAGGCCCAGACTACTACTGTTACT
1 AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
* * *
72924075 AATACGGGCTTAGGTCCAGA
1 AAAACGGGCTAAGGCCCAGA
72924095 ATGTATTTGC
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
33 3 0.04
34 71 0.96
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.21
Consensus pattern (34 bp):
AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
Found at i:72927209 original size:27 final size:27
Alignment explanation
Indices: 72926991--72927198 Score: 310
Period size: 27 Copynumber: 7.7 Consensus size: 27
72926981 CGTACCTGAA
*
72926991 CCTTCATGTGATAAAATGAAGATTTTAC
1 CCTT-ATGTGATAAAATGACGATTTTAC
*
72927019 CCTCATGTGATAAAATGACGATTTTAC
1 CCTTATGTGATAAAATGACGATTTTAC
* *
72927046 CC-TCTGTGATAAAATGTCGATTTTAC
1 CCTTATGTGATAAAATGACGATTTTAC
*
72927072 CCTTATGTGATAAAATGACGATTTTGC
1 CCTTATGTGATAAAATGACGATTTTAC
* *
72927099 CCTCATGTGATAAATTGACGATTTTAC
1 CCTTATGTGATAAAATGACGATTTTAC
72927126 CCTTATGTGATAAAATGACGATTTTAC
1 CCTTATGTGATAAAATGACGATTTTAC
* * *
72927153 CCTTGTGTGATAAAATGATGATTTTGC
1 CCTTATGTGATAAAATGACGATTTTAC
72927180 CCTTATGTGATAAAATGAC
1 CCTTATGTGATAAAATGAC
72927199 CAAAATACCC
Statistics
Matches: 161, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.14
27 135 0.84
28 3 0.02
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (27 bp):
CCTTATGTGATAAAATGACGATTTTAC
Found at i:72927220 original size:27 final size:26
Alignment explanation
Indices: 72927190--72927304 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
72927180 CCTTATGTGA
*
72927190 TAAAATGACCAAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
*
72927217 TAAAATGACCGAAATACCCAAATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
* *
72927244 TAGAATGACCGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCC-ATAGGG
* * * *
72927271 TAAAATGACTGTAATACCCCGGTAAGG
1 TAAAATGACCGAAATACCCC-ATAGGG
72927298 TAAAATG
1 TAAAATG
72927305 GCAGATTTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCCATAGGG
Found at i:72927363 original size:23 final size:23
Alignment explanation
Indices: 72927337--72927392 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
72927327 ATGTATTTGA
72927337 GCATGGCATGT-T-ATATGTATGTT
1 GCAT-GCATGTATAATAT-TATGTT
*
72927360 GCATCCATGTATAATATTATGTT
1 GCATGCATGTATAATATTATGTT
72927383 GCATTGCATG
1 GCA-TGCATG
72927393 GGGTGGGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 5 0.18
23 14 0.50
24 9 0.32
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.41
Consensus pattern (23 bp):
GCATGCATGTATAATATTATGTT
Found at i:72927672 original size:18 final size:18
Alignment explanation
Indices: 72927649--72927684 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72927639 TTGCATATTA
*
72927649 CACTGATTACTGTTACTG
1 CACTGATTACTATTACTG
72927667 CACTGATTACTATTACTG
1 CACTGATTACTATTACTG
72927685 AAAAGGGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
CACTGATTACTATTACTG
Found at i:72927751 original size:34 final size:34
Alignment explanation
Indices: 72927674--72927795 Score: 154
Period size: 34 Copynumber: 3.6 Consensus size: 34
72927664 CTGCACTGAT
* * *
72927674 TACTATTACTGAAAAGGGCTAAAGCCTAGGCTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* * *
72927708 AATTATTACTGAAATGGGCTAAAGCCCAGACTGT
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* *
72927742 TACTGTTACTGAAATGGGCTAAGGCCCAGACTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* *
72927776 TACTGTTACTGATATGGGCT
1 TACTATTACTGAAATGGGCT
72927796 TAGGCCTAGA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 76 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
Found at i:72929072 original size:13 final size:13
Alignment explanation
Indices: 72929054--72929081 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72929044 AGTAATAAAG
72929054 TAGGAAAAATAAT
1 TAGGAAAAATAAT
72929067 TAGGAAAAATAAT
1 TAGGAAAAATAAT
72929080 TA
1 TA
72929082 AATTGGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.25
Consensus pattern (13 bp):
TAGGAAAAATAAT
Found at i:72936377 original size:36 final size:36
Alignment explanation
Indices: 72936337--72936406 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
72936327 TTAGCAGTGT
*
72936337 TATCCACTAGTGTGTCTATATGATGTAACAAAAAAG
1 TATCCACCAGTGTGTCTATATGATGTAACAAAAAAG
72936373 TATCCACCAGTGTGTCTATATGATGTAACAAAAA
1 TATCCACCAGTGTGTCTATATGATGTAACAAAAA
72936407 TTATCTTTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (36 bp):
TATCCACCAGTGTGTCTATATGATGTAACAAAAAAG
Found at i:72938801 original size:14 final size:14
Alignment explanation
Indices: 72938782--72938809 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72938772 GAATCCAAGA
72938782 GACACTATATATGT
1 GACACTATATATGT
72938796 GACACTATATATGT
1 GACACTATATATGT
72938810 TCCCTAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
GACACTATATATGT
Found at i:72942867 original size:20 final size:21
Alignment explanation
Indices: 72942844--72942893 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 21
72942834 ATGACATTAG
*
72942844 ACAATTAAATAAAT-TAATGC
1 ACAAATAAATAAATCTAATGC
72942864 ACAAATAAATAAATCTAATATGC
1 ACAAATAAATAAATCT-A-ATGC
72942887 ACAAATA
1 ACAAATA
72942894 CTAAAAAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.50
21 1 0.04
22 1 0.04
23 11 0.42
ACGTcount: A:0.58, C:0.12, G:0.04, T:0.26
Consensus pattern (21 bp):
ACAAATAAATAAATCTAATGC
Found at i:72943994 original size:27 final size:27
Alignment explanation
Indices: 72943961--72944022 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
72943951 ACCTAAATTT
72943961 AGATGTAAAAACCTTATGGTTTCATTA
1 AGATGTAAAAACCTTATGGTTTCATTA
*
72943988 AGATGTAAAAACCTTATGGTTTTATTA
1 AGATGTAAAAACCTTATGGTTTCATTA
*
72944015 AAATGTAA
1 AGATGTAA
72944023 CACCTACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (27 bp):
AGATGTAAAAACCTTATGGTTTCATTA
Found at i:72948970 original size:20 final size:20
Alignment explanation
Indices: 72948935--72949027 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
72948925 TAATAGGAGC
** *
72948935 ACCGAAGTGCTGACAGGGGA
1 ACCGAAGTGCAAACAGAGGA
*
72948955 ACCGTAGTGCAAACAG-GGA
1 ACCGAAGTGCAAACAGAGGA
*** *
72948974 CACCGAAGTGTGTACAGAGGC
1 -ACCGAAGTGCAAACAGAGGA
*
72948995 ACCGAAGTGCAAACAGAGGC
1 ACCGAAGTGCAAACAGAGGA
72949015 ACCGAAGTGCAAA
1 ACCGAAGTGCAAA
72949028 TCCCATACAA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
19 3 0.05
20 55 0.92
21 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.32, T:0.10
Consensus pattern (20 bp):
ACCGAAGTGCAAACAGAGGA
Found at i:72949004 original size:40 final size:40
Alignment explanation
Indices: 72948933--72949024 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
72948923 CATAATAGGA
* *
72948933 GCACCGAAGTGCTGACAGGGGAACCGTAGTGCAAACAG-G
1 GCACCGAAGTGCTGACAGAGGAACCGAAGTGCAAACAGAG
*
72948972 GACACCGAAGTG-TGTACAGAGGCACCGAAGTGCAAACAGAG
1 G-CACCGAAGTGCTG-ACAGAGGAACCGAAGTGCAAACAGAG
72949013 GCACCGAAGTGC
1 GCACCGAAGTGC
72949025 AAATCCCATA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
39 3 0.07
40 41 0.89
41 2 0.04
ACGTcount: A:0.33, C:0.24, G:0.34, T:0.10
Consensus pattern (40 bp):
GCACCGAAGTGCTGACAGAGGAACCGAAGTGCAAACAGAG
Found at i:72953893 original size:16 final size:16
Alignment explanation
Indices: 72953872--72953906 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
72953862 ACTAAAATTT
72953872 CAACTAAATACCATTA
1 CAACTAAATACCATTA
72953888 CAACTAAATACCATTA
1 CAACTAAATACCATTA
72953904 CAA
1 CAA
72953907 ATCCACCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (16 bp):
CAACTAAATACCATTA
Found at i:72956000 original size:35 final size:35
Alignment explanation
Indices: 72955960--72956113 Score: 172
Period size: 35 Copynumber: 4.4 Consensus size: 35
72955950 TAGCTGATTA
*
72955960 GCATGTTAACCATG-CAATTATACTGATTCTAATTC
1 GCATGTTAAGCATGTC-ATTATACTGATTCTAATTC
* *
72955995 GCATGTTAAGCATGTCATTATACTGATTCTGATTT
1 GCATGTTAAGCATGTCATTATACTGATTCTAATTC
** *
72956030 GCATGTTAAGTGTGTCATTATACTGATTCTTATTC
1 GCATGTTAAGCATGTCATTATACTGATTCTAATTC
*
72956065 GCATGTTAAGCATG-C-TGCTATACTGATTCTGA-TC
1 GCATGTTAAGCATGTCAT--TATACTGATTCTAATTC
*
72956099 TGCATGTAAAGCATG
1 -GCATGTTAAGCATG
72956114 CCTACTAAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
33 1 0.01
34 3 0.03
35 99 0.95
36 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (35 bp):
GCATGTTAAGCATGTCATTATACTGATTCTAATTC
Found at i:72956034 original size:70 final size:68
Alignment explanation
Indices: 72955953--72956114 Score: 209
Period size: 70 Copynumber: 2.3 Consensus size: 68
72955943 TTCTGATTAG
* *
72955953 CTGATTAGCATGTTAACCATGCAATTATACTGATTCTAATTCGCATGTTAAGCATG-TCATTATA
1 CTGATTTGCATGTTAAGCATGC-ATTATACTGATTCTAATTCGCATGTTAAGCATGCTC--TATA
72956017 CTGATT
63 CTGATT
** *
72956023 CTGATTTGCATGTTAAGTGTGTCATTATACTGATTCTTATTCGCATGTTAAGCATGCTGCTATAC
1 CTGATTTGCATGTTAAGCATG-CATTATACTGATTCTAATTCGCATGTTAAGCATGCT-CTATAC
72956088 TGATT
64 TGATT
* *
72956093 CTGATCTGCATGTAAAGCATGC
1 CTGATTTGCATGTTAAGCATGC
72956115 CTACTAAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
69 1 0.01
70 76 0.95
71 2 0.03
72 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (68 bp):
CTGATTTGCATGTTAAGCATGCATTATACTGATTCTAATTCGCATGTTAAGCATGCTCTATACTG
ATT
Found at i:72957487 original size:15 final size:15
Alignment explanation
Indices: 72957469--72957531 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
72957459 ATTGAAATTC
*
72957469 TAGATTGTGAAACTA
1 TAGACTGTGAAACTA
*
72957484 TAGACTGTGAAACAA
1 TAGACTGTGAAACTA
* *
72957499 TAGACTATGAAACTT
1 TAGACTGTGAAACTA
* *
72957514 TAGATTGCGAACACTA
1 TAGACTGTGAA-ACTA
72957530 TA
1 TA
72957532 TATTATAAAC
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
15 33 0.87
16 5 0.13
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (15 bp):
TAGACTGTGAAACTA
Found at i:72960084 original size:45 final size:44
Alignment explanation
Indices: 72960020--72960147 Score: 141
Period size: 44 Copynumber: 2.9 Consensus size: 44
72960010 GAATTTAGAA
* * *
72960020 ATCCGAACTCGTTGAGTTGGTCCGGGTTCGTGATATGTATAAG-GC
1 ATCCGAACTTGTTGAGTTGGTCCGAGTTCGT--TATGGATAAGAGC
* **
72960065 ATCCGAACTTATTGAGTTGGTCCGAGTTCGTTATGGATGTGAGC
1 ATCCGAACTTGTTGAGTTGGTCCGAGTTCGTTATGGATAAGAGC
* * * *
72960109 ATCCGAGCTTGTTGAGTTGGTTCAAGTTCATTATGGATA
1 ATCCGAACTTGTTGAGTTGGTCCGAGTTCGTTATGGATA
72960148 CGATATATGT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 7 0.10
44 35 0.50
45 28 0.40
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (44 bp):
ATCCGAACTTGTTGAGTTGGTCCGAGTTCGTTATGGATAAGAGC
Found at i:72979694 original size:44 final size:43
Alignment explanation
Indices: 72979629--72979755 Score: 137
Period size: 44 Copynumber: 2.9 Consensus size: 43
72979619 CATATATCGT
* * * *
72979629 ATCCATAATGAACTTGAACCAACTCAACAAGCTCGGATGCTCAC
1 ATCCATAACGAACTCGGACCAACTCAACAAGTTCGGATGC-CAC
* **
72979673 ATCCATAACGAACTCGGACCAACTCAATAAGTTCGGATGCCTT
1 ATCCATAACGAACTCGGACCAACTCAACAAGTTCGGATGCCAC
* * *
72979716 ATACATATCACGAACCCGGACCAACTCAACGAGTTCGGAT
1 ATCCATA--ACGAACTCGGACCAACTCAACAAGTTCGGAT
72979756 TTCTAAATTC
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 7 0.10
44 35 0.50
45 28 0.40
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (43 bp):
ATCCATAACGAACTCGGACCAACTCAACAAGTTCGGATGCCAC
Found at i:72979743 original size:45 final size:44
Alignment explanation
Indices: 72979646--72979755 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 44
72979636 ATGAACTTGA
* * *
72979646 ACCAACTCAACAAGCTCGGATGCTCACATCCATAACGAACTCGG
1 ACCAACTCAACAAGTTCGGATGCTCACATACATAACGAACCCGG
* **
72979690 ACCAACTCAATAAGTTCGGATGC-CTTATACATATCACGAACCCGG
1 ACCAACTCAACAAGTTCGGATGCTCACATACATA--ACGAACCCGG
*
72979735 ACCAACTCAACGAGTTCGGAT
1 ACCAACTCAACAAGTTCGGAT
72979756 TTCTAAATTC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 7 0.12
44 21 0.38
45 28 0.50
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (44 bp):
ACCAACTCAACAAGTTCGGATGCTCACATACATAACGAACCCGG
Found at i:72982328 original size:15 final size:15
Alignment explanation
Indices: 72982290--72982352 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
72982280 GTTTATAATA
* *
72982290 TATAGTGTTCGCAATC
1 TATAGT-TTCACAGTC
* *
72982306 TAAAGTTTCATAGTC
1 TATAGTTTCACAGTC
*
72982321 TATTGTTTCACAGTC
1 TATAGTTTCACAGTC
*
72982336 TATAGTTTCACAATC
1 TATAGTTTCACAGTC
72982351 TA
1 TA
72982353 GAATTTCAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
15 33 0.87
16 5 0.13
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (15 bp):
TATAGTTTCACAGTC
Found at i:72983752 original size:35 final size:35
Alignment explanation
Indices: 72983713--72983874 Score: 147
Period size: 35 Copynumber: 4.6 Consensus size: 35
72983703 TTTTTAGTAG
*
72983713 GCATGCTTTACATGC-AGATCAGAATCAGTATAGCA
1 GCATGCTTAACATGCGA-ATCAGAATCAGTATAGCA
*
72983748 GCATGCTTAACATGCGAATAAGAATCAGTATAATGACA
1 GCATGCTTAACATGCGAATCAGAATCAGTAT-A-G-CA
*
72983786 -CA--CTTAACATGCAAATCAGAATCAGTATA--A
1 GCATGCTTAACATGCGAATCAGAATCAGTATAGCA
* ***
72983816 TGACATGCTTAACATGCGAATTAGAATCAGTATAATT
1 -G-CATGCTTAACATGCGAATCAGAATCAGTATAGCA
* *
72983853 GCATGGTTAACATGCTAATCAG
1 GCATGCTTAACATGCGAATCAG
72983875 CTAATCAGAA
Statistics
Matches: 106, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
30 1 0.01
33 2 0.02
34 1 0.01
35 94 0.89
36 3 0.03
37 3 0.03
38 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCAGAATCAGTATAGCA
Found at i:72983863 original size:70 final size:69
Alignment explanation
Indices: 72983713--72983874 Score: 211
Period size: 70 Copynumber: 2.3 Consensus size: 69
72983703 TTTTTAGTAG
* *
72983713 GCATGCTTTACATGCAGATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
1 GCATGCTTAACATGCAAATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
72983778 TAAT
66 TAAT
** *
72983782 GACACACTTAACATGCAAATCAGAATCAGTATA--ATGACATGCTTAACATGCGAATTAGAATCA
1 G-CATGCTTAACATGCAAATCAGAATCAGTATAGCA-G-CATGCTTAACATGCGAATAAGAATCA
72983845 GTATAATT
63 GTATAA-T
* *
72983853 GCATGGTTAACATGCTAATCAG
1 GCATGCTTAACATGCAAATCAG
72983875 CTAATCAGAA
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
68 1 0.01
69 2 0.03
70 75 0.94
71 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (69 bp):
GCATGCTTAACATGCAAATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
TAAT
Found at i:72984537 original size:13 final size:13
Alignment explanation
Indices: 72984519--72984543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72984509 TGAAGATAGG
72984519 GCTAGGTTTGGCA
1 GCTAGGTTTGGCA
72984532 GCTAGGTTTGGC
1 GCTAGGTTTGGC
72984544 CAAGCTTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.40, T:0.32
Consensus pattern (13 bp):
GCTAGGTTTGGCA
Found at i:72985952 original size:16 final size:16
Alignment explanation
Indices: 72985931--72985965 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
72985921 ATAGGTGGAT
72985931 TTGTAATGGTATTTAG
1 TTGTAATGGTATTTAG
72985947 TTGTAATGGTATTTAG
1 TTGTAATGGTATTTAG
72985963 TTG
1 TTG
72985966 AAATTTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (16 bp):
TTGTAATGGTATTTAG
Found at i:72990850 original size:20 final size:20
Alignment explanation
Indices: 72990825--72990919 Score: 102
Period size: 20 Copynumber: 4.8 Consensus size: 20
72990815 TTGTATGGGA
72990825 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
72990845 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
***
72990865 TACACACTTCGGTGTCC-CTG
1 TTTGCACTTCGGTG-CCTCTG
* * *
72990885 TTTGCACTACGGTTCCCCTG
1 TTTGCACTTCGGTGCCTCTG
**
72990905 TCAGCACTTCGGTGC
1 TTTGCACTTCGGTGC
72990920 TCCTATTATG
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 57 0.93
21 2 0.03
ACGTcount: A:0.09, C:0.33, G:0.23, T:0.35
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:72990874 original size:40 final size:39
Alignment explanation
Indices: 72990828--72990919 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 39
72990818 TATGGGATTT
* *
72990828 GCACTTCGGTGCCTCTGTTTGCACTTCGGTGCCTCTGTACA
1 GCACTTCGGTGCC-CTGTTTGCACTACGGTGCCCCTGT-CA
*
72990869 -CACTTCGGTGTCCCTGTTTGCACTACGGTTCCCCTGTCA
1 GCACTTCGGTG-CCCTGTTTGCACTACGGTGCCCCTGTCA
72990908 GCACTTCGGTGC
1 GCACTTCGGTGC
72990920 TCCTATTATG
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
39 3 0.07
40 41 0.89
41 2 0.04
ACGTcount: A:0.10, C:0.34, G:0.24, T:0.33
Consensus pattern (39 bp):
GCACTTCGGTGCCCTGTTTGCACTACGGTGCCCCTGTCA
Found at i:73006512 original size:39 final size:39
Alignment explanation
Indices: 73006468--73006575 Score: 162
Period size: 39 Copynumber: 2.8 Consensus size: 39
73006458 TATGAGATTG
* *
73006468 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGATAGA
*
73006507 AAAATATCCGGACATGAGACCCGCAGGCTATATGATAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGATAGA
* * *
73006546 AATATATCCGGACTTGAGGTCCGCAGGCTA
1 AAAATATCCGGACATGAGATCCGCAGGCTA
73006576 CGTGTTGGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGATAGA
Found at i:73006635 original size:38 final size:39
Alignment explanation
Indices: 73006566--73006661 Score: 126
Period size: 38 Copynumber: 2.5 Consensus size: 39
73006556 GACTTGAGGT
* *
73006566 CCGCAGGCTACGTGTTGG-AATTATACTCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTAATTATACTCGGGTTAAATC
73006604 CCGCAGGCTTCGTGCTGGTAA-TATA-TCCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTAATTATACT-CGGGTTAAATC
* *
73006642 CCGCAGGCCTAGTGCTGGTA
1 CCGCAGGCTTCGTGCTGGTA
73006662 TTGTATCTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
37 1 0.02
38 49 0.94
39 2 0.04
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGCAGGCTTCGTGCTGGTAATTATACTCGGGTTAAATC
Found at i:73008222 original size:27 final size:27
Alignment explanation
Indices: 73008192--73008325 Score: 133
Period size: 27 Copynumber: 5.0 Consensus size: 27
73008182 CCTTAATCGA
* *
73008192 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATAACTATTTTGCCCTTATGTGG
* * * *
73008219 TAAAATGATTGTTTTGCTCTTATGTGG
1 TAAAATAACTATTTTGCCCTTATGTGG
* *
73008246 TAAAATAACTGTTTTGCCTTTATGTGG
1 TAAAATAACTATTTTGCCCTTATGTGG
* *
73008273 TAAAATAACTATTTTGCCCTTTTATGG
1 TAAAATAACTATTTTGCCCTTATGTGG
* * * * *
73008300 TAAGATGACTGTTTTACCCCTATGTG
1 TAAAATAACTATTTTGCCCTTATGTG
73008326 ATGTATGTTT
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATAACTATTTTGCCCTTATGTGG
Done.