Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 215 of 373
Found at i:73297508 original size:43 final size:43
Alignment explanation
Indices: 73297447--73297533 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
73297437 CAATTAACTT
73297447 AGTCTTTGAATTGCAAAGTTTTTTAGCACACATGGCCAGGCAC
1 AGTCTTTGAATTGCAAAGTTTTTTAGCACACATGGCCAGGCAC
73297490 AGTCTTTGAATTGCAAAGTTTTTTAGCACACATGGCCAGGCAC
1 AGTCTTTGAATTGCAAAGTTTTTTAGCACACATGGCCAGGCAC
73297533 A
1 A
73297534 CGGGCGTGCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
AGTCTTTGAATTGCAAAGTTTTTTAGCACACATGGCCAGGCAC
Found at i:73298204 original size:18 final size:19
Alignment explanation
Indices: 73298168--73298206 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
73298158 CTCTCCACGT
73298168 CACACACCCGTGCTGACCAC
1 CACACACCCGTGC-GACCAC
*
73298188 CACACGCCCGTGC-ACCAC
1 CACACACCCGTGCGACCAC
73298206 C
1 C
73298207 TTACAACAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.23, C:0.54, G:0.15, T:0.08
Consensus pattern (19 bp):
CACACACCCGTGCGACCAC
Found at i:73299725 original size:6 final size:6
Alignment explanation
Indices: 73299709--73299776 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 6
73299699 CCTTTTTTTA
* * *
73299709 TTTATT CTTATT TTTA-T TTTAGTT TATT-TT ATTTATG TTTATT TTTCTT
1 TTTATT TTTATT TTTATT TTTA-TT T-TTATT -TTTATT TTTATT TTTATT
* *
73299758 TTGATT TTTATC TTTATT T
1 TTTATT TTTATT TTTATT T
73299777 CAATTTTATT
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
5 5 0.11
6 36 0.77
7 4 0.09
8 2 0.04
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:73299795 original size:5 final size:5
Alignment explanation
Indices: 73299704--73299796 Score: 59
Period size: 5 Copynumber: 17.8 Consensus size: 5
73299694 ATCCTCCTTT
*
73299704 TTTTA -TTTA TTCTTA TTTTTA TTTTA GTTTA TTTTA -TTTA TGTTTA
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA
* *
73299750 TTTTTC TTTTGA TTTTTA TCTTTA TTTCAA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA T-TTTA TTT-TA TTTTA TTTTA TTTTA TTTT
73299797 GAAAGACATA
Statistics
Matches: 70, Mismatches: 6, Indels: 24
0.70 0.06 0.24
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 29 0.41
6 23 0.33
7 7 0.10
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:73302684 original size:13 final size:13
Alignment explanation
Indices: 73302668--73302700 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73302658 TTTAATTAAA
*
73302668 TTAGTTAATTAGT
1 TTAGATAATTAGT
73302681 TTAGATAATTAGT
1 TTAGATAATTAGT
73302694 TTA-ATAA
1 TTAGATAA
73302701 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:73309367 original size:48 final size:48
Alignment explanation
Indices: 73309292--73309518 Score: 323
Period size: 48 Copynumber: 4.7 Consensus size: 48
73309282 AACTAAATAA
* * * *
73309292 ATCACCAATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATACC
1 ATCACCGATGCCATGTCCCAGACATGGTCTTACACTAGCA--CACATATC
* *
73309340 ATCACCGATGCCATGTCCCTGAAATGGTCTTACACTAGCACACATATC
1 ATCACCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
* *
73309388 ATCACCGATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATC
1 ATCACCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
*
73309436 ATCACCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATC
1 ATCACCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
* *
73309484 ATCGCCGATGCCATGTCTCAGACATGGTCTTACAC
1 ATCACCGATGCCATGTCCCAGACATGGTCTTACAC
73309519 ATCGTCAATG
Statistics
Matches: 163, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
48 160 0.98
49 1 0.01
50 2 0.01
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (48 bp):
ATCACCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
Found at i:73319633 original size:27 final size:27
Alignment explanation
Indices: 73319603--73319780 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73319593 ATATTGAGTC
* * * *
73319603 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73319630 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73319657 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73319685 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73319712 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73319739 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73319766 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73319781 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73319742 original size:82 final size:81
Alignment explanation
Indices: 73319624--73319779 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73319614 TGCTATATAA
* *
73319624 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73319689 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73319706 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73319770 CACTTAGTGC
65 CACTTAGTGC
73319780 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73322363 original size:28 final size:28
Alignment explanation
Indices: 73322321--73322405 Score: 98
Period size: 29 Copynumber: 3.0 Consensus size: 28
73322311 TACCTGTATC
* * *
73322321 TGGCCTATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
73322349 TGGCCCATTAGGCCCAAATGACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
73322378 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
73322406 ATCATGCTCA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 23 0.49
29 24 0.51
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:73325532 original size:17 final size:18
Alignment explanation
Indices: 73325510--73325544 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73325500 TTACATTGAA
73325510 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
73325527 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
73325545 TTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:73326632 original size:28 final size:29
Alignment explanation
Indices: 73326592--73326705 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
73326582 TACATGTATC
*
73326592 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
*
73326620 TGGCCCATTAAGCCCAAATCACCTGT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
* * * *
73326649 TGGCCCAGTAGGCCCAAATCATATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
73326678 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
73326706 ATCATGCTCA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 26 0.36
29 46 0.63
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:73326649 original size:29 final size:29
Alignment explanation
Indices: 73326585--73326693 Score: 132
Period size: 29 Copynumber: 3.8 Consensus size: 29
73326575 TTTCACATAC
*
73326585 ATGTATCTGGCCCATTAAGCCC-AATCAT
1 ATGTATATGGCCCATTAAGCCCAAATCAT
*
73326613 AT-TCATATGGCCCATTAAGCCCAAATCAC
1 ATGT-ATATGGCCCATTAAGCCCAAATCAT
* * *
73326642 CTGTATATGGCCCAGTAGGCCCAAATCAT
1 ATGTATATGGCCCATTAAGCCCAAATCAT
* *
73326671 ATTTATATGGCCCATTAGGCCCA
1 ATGTATATGGCCCATTAAGCCCA
73326694 GTCACATTCA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 19 0.28
29 48 0.70
30 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (29 bp):
ATGTATATGGCCCATTAAGCCCAAATCAT
Found at i:73328727 original size:28 final size:28
Alignment explanation
Indices: 73328687--73328742 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
73328677 ATACATAGTG
73328687 CGCGGAGCAGGATTTTGATTAACAGCAA
1 CGCGGAGCAGGATTTTGATTAACAGCAA
* *
73328715 CGCGGAGTAGGATTTTGATTAGCAGCAA
1 CGCGGAGCAGGATTTTGATTAACAGCAA
73328743 TTGCAGGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (28 bp):
CGCGGAGCAGGATTTTGATTAACAGCAA
Found at i:73352367 original size:43 final size:43
Alignment explanation
Indices: 73352306--73352546 Score: 419
Period size: 43 Copynumber: 5.6 Consensus size: 43
73352296 CTAGCATTAC
*
73352306 GCCTGCGAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
73352349 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
73352392 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
73352435 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
73352478 GCCTGTTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
73352521 TCCTACTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
73352547 TAATACCAGC
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 187 1.00
ACGTcount: A:0.32, C:0.34, G:0.24, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:73352595 original size:38 final size:38
Alignment explanation
Indices: 73352539--73352662 Score: 133
Period size: 38 Copynumber: 3.2 Consensus size: 38
73352529 GGCACGAAGG
* *
73352539 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACTAGGCCTGCGGGATTTAA
* *
73352577 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACTAGGCCTGCGGGATTTAA
* ** * *
73352615 CCCAGATATTTTACCAGCA-TGGAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACTAG-GCCTGCGGG-ATTTAA
73352654 GCCCGGATA
1 -CCCGGATA
73352663 CACATCAAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
38 59 0.83
39 5 0.07
40 7 0.10
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAGGCCTGCGGGATTTAA
Found at i:73355626 original size:44 final size:45
Alignment explanation
Indices: 73355578--73355666 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 45
73355568 CATGAATTAT
* *
73355578 TCCTGTCTCCAATGCCATA-TATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATAGCTCAA
*
73355622 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATAGCTCA
1 TCCTGTCTCCAAAGCCATA-TTATAATATGGACTTACATAGCTCA
73355667 TTTCTGTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
46 22 0.55
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (45 bp):
TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATAGCTCAA
Found at i:73360465 original size:27 final size:27
Alignment explanation
Indices: 73360427--73360479 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
73360417 ACGTCTGCTA
73360427 GGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
73360454 GGCACGAAGGCCCGAATACACATCAC
1 GGCACGAAGGCCCGAATACACATCAC
73360480 GCCTGAATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.36, G:0.23, T:0.08
Consensus pattern (27 bp):
GGCACGAAGGCCCGAATACACATCACC
Found at i:73360538 original size:43 final size:43
Alignment explanation
Indices: 73360421--73360738 Score: 455
Period size: 43 Copynumber: 7.4 Consensus size: 43
73360411 GGCATTACGT
73360421 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA-GC
* * * *
73360465 CCGAATA--CAC-ATCACGCCTGAATACA-ATCACCGGCACGAAGC
1 CTG-CTAGGCACGA--AGGCCCGAATACACATCACCGGCACGAAGC
73360507 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
73360550 CTTCTAGGCACAAAGGCCCGAATACACATCACCGGCATGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
73360593 CTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
73360636 CTGCTAGGCACGAAGGCCCGATTACACATCACTGACACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
73360679 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
73360722 CTGCTAGGTACGAAGGC
1 CTGCTAGGCACGAAGGC
73360739 GCAAATATAA
Statistics
Matches: 243, Mismatches: 24, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
41 2 0.01
42 16 0.07
43 209 0.86
44 14 0.06
45 2 0.01
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
Found at i:73360786 original size:38 final size:38
Alignment explanation
Indices: 73360743--73360861 Score: 130
Period size: 38 Copynumber: 3.1 Consensus size: 38
73360733 GAAGGCGCAA
* * * *
73360743 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGAGATTTAACCCGG
73360781 ATATAATACCAGCACGAAGCCTGCGAGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGAGATTTAACCCGG
** * * * *
73360819 ATATTTTACCAGTATGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGAG-ATTTAA-CCCGG
73360859 ATA
1 ATA
73360862 CACATCAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
38 56 0.81
39 5 0.07
40 8 0.12
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGAGATTTAACCCGG
Found at i:73366333 original size:25 final size:24
Alignment explanation
Indices: 73366292--73366357 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
73366282 TCCTATACAT
* *
73366292 GTATGCTCATACAAGCTCTGAATTG
1 GTATGCTCATACGAGCTAT-AATTG
*
73366317 GTATGCTCTTACGAGCTATAATTG
1 GTATGCTCATACGAGCTATAATTG
* *
73366341 GTAAGTTCATACGAGCT
1 GTATGCTCATACGAGCT
73366358 GAATATCAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
24 19 0.54
25 16 0.46
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (24 bp):
GTATGCTCATACGAGCTATAATTG
Found at i:73371697 original size:53 final size:53
Alignment explanation
Indices: 73371626--73371834 Score: 220
Period size: 53 Copynumber: 3.9 Consensus size: 53
73371616 CTTTCCTTTT
* *
73371626 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * * *
73371679 TGAACTTATCATTTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 TAAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
** * * * * * * *
73371732 TCATAGTTTATCAATACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTG
1 T-A-AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
73371787 TAAAACTTACCATTGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 T-AAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
73371835 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.37
54 35 0.28
55 42 0.34
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (53 bp):
TAAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:73371767 original size:55 final size:53
Alignment explanation
Indices: 73371640--73371834 Score: 174
Period size: 55 Copynumber: 3.6 Consensus size: 53
73371630 CTTACCATTG
* * * * *
73371640 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTTATCATTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCAACTTATCAATA
* * * *
73371693 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCATAGTTTATCAATA
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCA-A-CTTATCAATA
*** * * * * *
73371748 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-CAACTTATCAATA
* * * *
73371802 CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
73371835 AAACCCTAAT
Statistics
Matches: 113, Mismatches: 26, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
53 36 0.32
54 35 0.31
55 41 0.36
56 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.39
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCAACTTATCAATA
Found at i:73380084 original size:68 final size:68
Alignment explanation
Indices: 73379941--73380097 Score: 176
Period size: 68 Copynumber: 2.3 Consensus size: 68
73379931 TTAACTGTGA
* * * * *
73379941 AATC-AACAGATTCGGATAGCTACATTTACTAAATAAAACAACATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAGTGCATCGAACA
73380005 ATG
66 ATG
* * *
73380008 AA-CTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGAT-GATGCTTTGAA
1 AATC-TAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAG-TGCATCGAA
* *
73380071 TAGTG
64 CAATG
*
73380076 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
73380098 TAATTTTAAG
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
66 1 0.01
67 3 0.04
68 70 0.93
69 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAGTGCATCGAACA
ATG
Found at i:73383574 original size:44 final size:43
Alignment explanation
Indices: 73383509--73383635 Score: 137
Period size: 44 Copynumber: 2.9 Consensus size: 43
73383499 CATATATCGT
* * * *
73383509 ATCCATAATGAACTTGAACCAACTCAACAAGCTCGGATGCTCAC
1 ATCCATAACGAACTCGGACCAACTCAACAAGTTCGGATGC-CAC
* **
73383553 ATCCATAACGAACTCGGACCAACTCAATAAGTTCGGATGCCTT
1 ATCCATAACGAACTCGGACCAACTCAACAAGTTCGGATGCCAC
* * *
73383596 ATACATATCACGAACCCGGACCAACTCAACGAGTTCGGAT
1 ATCCATA--ACGAACTCGGACCAACTCAACAAGTTCGGAT
73383636 TTCTAAATTC
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 7 0.10
44 35 0.50
45 28 0.40
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (43 bp):
ATCCATAACGAACTCGGACCAACTCAACAAGTTCGGATGCCAC
Found at i:73383623 original size:45 final size:44
Alignment explanation
Indices: 73383526--73383635 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 44
73383516 ATGAACTTGA
* * *
73383526 ACCAACTCAACAAGCTCGGATGCTCACATCCATAACGAACTCGG
1 ACCAACTCAACAAGTTCGGATGCTCACATACATAACGAACCCGG
* **
73383570 ACCAACTCAATAAGTTCGGATGC-CTTATACATATCACGAACCCGG
1 ACCAACTCAACAAGTTCGGATGCTCACATACATA--ACGAACCCGG
*
73383615 ACCAACTCAACGAGTTCGGAT
1 ACCAACTCAACAAGTTCGGAT
73383636 TTCTAAATTC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 7 0.12
44 21 0.38
45 28 0.50
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (44 bp):
ACCAACTCAACAAGTTCGGATGCTCACATACATAACGAACCCGG
Found at i:73386207 original size:15 final size:15
Alignment explanation
Indices: 73386169--73386231 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
73386159 GTTTATAATA
* *
73386169 TATAGTGTTCGCAATC
1 TATAGT-TTCACAGTC
* *
73386185 TAAAGTTTCATAGTC
1 TATAGTTTCACAGTC
*
73386200 TATTGTTTCACAGTC
1 TATAGTTTCACAGTC
*
73386215 TATAGTTTCACAATC
1 TATAGTTTCACAGTC
73386230 TA
1 TA
73386232 GAATTTCAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
15 33 0.87
16 5 0.13
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (15 bp):
TATAGTTTCACAGTC
Found at i:73387621 original size:35 final size:35
Alignment explanation
Indices: 73387582--73387743 Score: 147
Period size: 35 Copynumber: 4.6 Consensus size: 35
73387572 TTTTTAGTAG
*
73387582 GCATGCTTTACATGC-AGATCAGAATCAGTATAGCA
1 GCATGCTTAACATGCGA-ATCAGAATCAGTATAGCA
*
73387617 GCATGCTTAACATGCGAATAAGAATCAGTATAATGACA
1 GCATGCTTAACATGCGAATCAGAATCAGTAT-A-G-CA
*
73387655 -CA--CTTAACATGCAAATCAGAATCAGTATA--A
1 GCATGCTTAACATGCGAATCAGAATCAGTATAGCA
* ***
73387685 TGACATGCTTAACATGCGAATTAGAATCAGTATAATT
1 -G-CATGCTTAACATGCGAATCAGAATCAGTATAGCA
* *
73387722 GCATGGTTAACATGCTAATCAG
1 GCATGCTTAACATGCGAATCAG
73387744 CTAATCAGAA
Statistics
Matches: 106, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
30 1 0.01
33 2 0.02
34 1 0.01
35 94 0.89
36 3 0.03
37 3 0.03
38 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCAGAATCAGTATAGCA
Found at i:73387732 original size:70 final size:69
Alignment explanation
Indices: 73387582--73387743 Score: 211
Period size: 70 Copynumber: 2.3 Consensus size: 69
73387572 TTTTTAGTAG
* *
73387582 GCATGCTTTACATGCAGATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
1 GCATGCTTAACATGCAAATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
73387647 TAAT
66 TAAT
** *
73387651 GACACACTTAACATGCAAATCAGAATCAGTATA--ATGACATGCTTAACATGCGAATTAGAATCA
1 G-CATGCTTAACATGCAAATCAGAATCAGTATAGCA-G-CATGCTTAACATGCGAATAAGAATCA
73387714 GTATAATT
63 GTATAA-T
* *
73387722 GCATGGTTAACATGCTAATCAG
1 GCATGCTTAACATGCAAATCAG
73387744 CTAATCAGAA
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
68 1 0.01
69 2 0.03
70 75 0.94
71 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (69 bp):
GCATGCTTAACATGCAAATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
TAAT
Found at i:73388407 original size:13 final size:13
Alignment explanation
Indices: 73388389--73388413 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73388379 TGAAGATAGG
73388389 GCTAGGTTTGGCA
1 GCTAGGTTTGGCA
73388402 GCTAGGTTTGGC
1 GCTAGGTTTGGC
73388414 CAAGCTTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.40, T:0.32
Consensus pattern (13 bp):
GCTAGGTTTGGCA
Found at i:73389813 original size:16 final size:16
Alignment explanation
Indices: 73389792--73389826 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
73389782 ATAGGTGGAT
73389792 TTGTAATGGTATTTAG
1 TTGTAATGGTATTTAG
73389808 TTGTAATGGTATTTAG
1 TTGTAATGGTATTTAG
73389824 TTG
1 TTG
73389827 AAATTTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (16 bp):
TTGTAATGGTATTTAG
Found at i:73394569 original size:20 final size:20
Alignment explanation
Indices: 73394544--73394638 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
73394534 TTGTATGGGA
73394544 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
73394564 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
***
73394584 TACACACTTCGGTGTCC-CT-
1 TTTGCACTTCGGTG-CCTCTG
* * *
73394603 TGTTGCACTACGGTTCCCCTG
1 T-TTGCACTTCGGTGCCTCTG
**
73394624 TCAGCACTTCGGTGC
1 TTTGCACTTCGGTGC
73394639 TCCTATTATG
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
19 3 0.05
20 53 0.90
21 3 0.05
ACGTcount: A:0.09, C:0.33, G:0.23, T:0.35
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:73394593 original size:40 final size:39
Alignment explanation
Indices: 73394547--73394638 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 39
73394537 TATGGGATTT
* *
73394547 GCACTTCGGTG-CCTCTGTTTGCACTTCGGTGCCTCTGTACA
1 GCACTTCGGTGCCCT-TG-TTGCACTACGGTGCCCCTGT-CA
*
73394588 -CACTTCGGTGTCCCTTGTTGCACTACGGTTCCCCTGTCA
1 GCACTTCGGTG-CCCTTGTTGCACTACGGTGCCCCTGTCA
73394627 GCACTTCGGTGC
1 GCACTTCGGTGC
73394639 TCCTATTATG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
39 3 0.07
40 37 0.82
41 2 0.04
42 3 0.07
ACGTcount: A:0.10, C:0.34, G:0.24, T:0.33
Consensus pattern (39 bp):
GCACTTCGGTGCCCTTGTTGCACTACGGTGCCCCTGTCA
Found at i:73413718 original size:53 final size:53
Alignment explanation
Indices: 73413539--73413793 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
73413529 ATTAGGGTTT
* *
73413539 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * * *
73413594 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGCTAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
73413649 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
73413702 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAA-TT-TTCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
73413751 AAGGATATCATGTGAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
73413794 GTACCCGCGT
Statistics
Matches: 168, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 10 0.06
53 41 0.24
54 8 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:73428488 original size:27 final size:27
Alignment explanation
Indices: 73428378--73428477 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
73428368 TGGATAAGTT
* * *
73428378 GTAGAATTATTGAAATACCCCTATAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
73428405 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
73428432 ATAGAATTA-CTGAAATACCCCTGTAGG
1 GTAGAATTATC-GAAATACCCCTGTAGG
*
73428459 GTAGAATTATCGAGATACC
1 GTAGAATTATCGAAATACC
73428478 ATTGTGGGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.97
28 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:73429190 original size:27 final size:26
Alignment explanation
Indices: 73429146--73429197 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73429136 CTCGCTGCAA
*
73429146 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73429173 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
73429198 GCGACTTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:73429203 original size:21 final size:21
Alignment explanation
Indices: 73429173--73429220 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
73429163 ATATATCTGT
*
73429173 TCTGGTGACTTCGTCACAATA
1 TCTGGCGACTTCGTCACAATA
73429194 TCTGGCGACTTCGTCACAATA
1 TCTGGCGACTTCGTCACAATA
73429215 TCTGGC
1 TCTGGC
73429221 AGCCTCGCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (21 bp):
TCTGGCGACTTCGTCACAATA
Found at i:73429315 original size:27 final size:26
Alignment explanation
Indices: 73429263--73429321 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
73429253 ATATATATAT
*
73429263 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
73429289 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
73429316 ATATCT
1 ATATCT
73429322 AGCACCCTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:73438946 original size:45 final size:45
Alignment explanation
Indices: 73438896--73438983 Score: 176
Period size: 45 Copynumber: 2.0 Consensus size: 45
73438886 AGGGTGATAG
73438896 TTCCTTATTGTTAAAATACGAGCTTACTAAGCTATATAGCTTAAT
1 TTCCTTATTGTTAAAATACGAGCTTACTAAGCTATATAGCTTAAT
73438941 TTCCTTATTGTTAAAATACGAGCTTACTAAGCTATATAGCTTA
1 TTCCTTATTGTTAAAATACGAGCTTACTAAGCTATATAGCTTA
73438984 CTTTGTTTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (45 bp):
TTCCTTATTGTTAAAATACGAGCTTACTAAGCTATATAGCTTAAT
Found at i:73448487 original size:40 final size:40
Alignment explanation
Indices: 73448432--73448698 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
73448422 AGCATTGGAT
73448432 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
73448472 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
73448512 TATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
73448552 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
73448592 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
73448632 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
73448672 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
73448699 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:73456970 original size:40 final size:40
Alignment explanation
Indices: 73456915--73457182 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
73456905 AGCATTGGAT
73456915 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
73456955 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
73456995 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
73457035 TGATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 T-ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
73457076 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
73457116 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
73457156 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
73457183 ATGTGTTTGG
Statistics
Matches: 217, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 178 0.82
41 39 0.18
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:73457130 original size:121 final size:120
Alignment explanation
Indices: 73456915--73457182 Score: 473
Period size: 121 Copynumber: 2.2 Consensus size: 120
73456905 AGCATTGGAT
*
73456915 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
*
73456980 AATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66 AATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
**
73457035 TGATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGATATATCCGGGCTGTGACCCGAAGG
1 T-ATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
73457100 CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
65 CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
73457156 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
73457183 ATGTGTTTGG
Statistics
Matches: 141, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 25 0.18
121 116 0.82
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (120 bp):
TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
AATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:73459807 original size:10 final size:10
Alignment explanation
Indices: 73459792--73459817 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
73459782 ATCCATCTCA
73459792 AAAAAAAAAG
1 AAAAAAAAAG
73459802 AAAAAAAAAG
1 AAAAAAAAAG
73459812 AAAAAA
1 AAAAAA
73459818 GATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:73472324 original size:55 final size:56
Alignment explanation
Indices: 73472259--73472373 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
73472249 AGCATGGCTG
* * *
73472259 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
73472315 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
73472370 CCAG
1 CCAG
73472374 GACGTTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:73472370 original size:28 final size:27
Alignment explanation
Indices: 73472284--73472373 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
73472274 GTGACAGAGT
*
73472284 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
73472313 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
73472340 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
73472368 CACCAG
1 CACCAG
73472374 GACGTTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:73472535 original size:28 final size:28
Alignment explanation
Indices: 73472494--73472597 Score: 190
Period size: 28 Copynumber: 3.7 Consensus size: 28
73472484 GTATAGAGTC
73472494 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
*
73472522 ATTTTGCATGCATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
*
73472550 CTTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
73472578 ATTTTGCATACATAGGGGTA
1 ATTTTGCATACATAGGGGTA
73472598 CTCTAGTACA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.36
Consensus pattern (28 bp):
ATTTTGCATACATAGGGGTATAATGGTA
Found at i:73473684 original size:12 final size:13
Alignment explanation
Indices: 73473665--73473697 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73473655 GGGTTCAGCT
73473665 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
73473678 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
73473690 ATGGAGAA
1 ATGGAGAA
73473698 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:73476341 original size:65 final size:66
Alignment explanation
Indices: 73476265--73476405 Score: 162
Period size: 65 Copynumber: 2.2 Consensus size: 66
73476255 ATGGTCGAGG
* * *
73476265 ACACGCTCGTGTGCCAGG-CAGTGTGAAAACTGGA-GGGTATACCGACTTAT-GCACACGGCCAA
1 ACACGCCCGTGTGCCAGGCCA-TGTGAAAA-TGAAGGGGTATACCGACTTATACCACACGGCCAA
73476327 GTC
64 GTC
* ** * * *
73476330 ACACGCCCGTGTGCTAGGCCATGTGCCAATTAAGGGGTATACTGACTTGTACCACACGGCCAAGT
1 ACACGCCCGTGTGCCAGGCCATGTGAAAATGAAGGGGTATACCGACTTATACCACACGGCCAAGT
73476395 C
66 C
73476396 ACACGCCCGT
1 ACACGCCCGT
73476406 ATGGAGCATA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
64 2 0.03
65 36 0.56
66 26 0.41
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (66 bp):
ACACGCCCGTGTGCCAGGCCATGTGAAAATGAAGGGGTATACCGACTTATACCACACGGCCAAGT
C
Found at i:73477338 original size:28 final size:28
Alignment explanation
Indices: 73477307--73477403 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
73477297 CAATGCCTCG
73477307 CACACTAAGTGCCATACTCGATATCTCA
1 CACACTAAGTGCCATACTCGATATCTCA
* *
73477335 CACACTAAGTGTCACT-CTC-AGTATCTCG
1 CACACTAAGTGCCA-TACTCGA-TATCTCA
*
73477363 CACACTAAGTGCCACACTCGATATCTCA
1 CACACTAAGTGCCATACTCGATATCTCA
*
73477391 CGCACTAAGTGCC
1 CACACTAAGTGCC
73477404 GTATATAGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.02
28 56 0.95
29 2 0.03
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.24
Consensus pattern (28 bp):
CACACTAAGTGCCATACTCGATATCTCA
Found at i:73477452 original size:40 final size:40
Alignment explanation
Indices: 73477393--73477495 Score: 143
Period size: 40 Copynumber: 2.6 Consensus size: 40
73477383 ATATCTCACG
* * * *
73477393 CACTAAGTGCCGTATATAGCCGAAGCTATCTCAAATTGCA
1 CACTAAGTGCCATAAATAGCCGAAGCTATATCAAATCGCA
* *
73477433 CACTAAGTGCCATAGATAGCCGAAGCTATATCTAATCGCA
1 CACTAAGTGCCATAAATAGCCGAAGCTATATCAAATCGCA
*
73477473 CACTAAGTGCCACAAATAGCCGA
1 CACTAAGTGCCATAAATAGCCGA
73477496 TTTGTCGTTG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (40 bp):
CACTAAGTGCCATAAATAGCCGAAGCTATATCAAATCGCA
Found at i:73488360 original size:13 final size:13
Alignment explanation
Indices: 73488342--73488369 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73488332 TGAATCAAGC
73488342 AACCATGAAATGT
1 AACCATGAAATGT
73488355 AACCATGAAATGT
1 AACCATGAAATGT
73488368 AA
1 AA
73488370 GGTTAATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (13 bp):
AACCATGAAATGT
Found at i:73492251 original size:26 final size:26
Alignment explanation
Indices: 73492222--73492312 Score: 67
Period size: 26 Copynumber: 3.3 Consensus size: 26
73492212 TCATAAAACC
73492222 ATTCAAATATTAATTTAAATGTCAAT
1 ATTCAAATATTAATTTAAATGTCAAT
* * * *
73492248 ATTCAATCAAAATAA-TTAACATCATTAATT
1 ATTCAA--ATATTAATTTAA-AT-GTCAA-T
* *
73492278 CATTCAATTATTAATTTAAATGACAAT
1 -ATTCAAATATTAATTTAAATGTCAAT
73492305 ATTCAAAT
1 ATTCAAAT
73492313 CTATATTCCA
Statistics
Matches: 47, Mismatches: 11, Indels: 14
0.65 0.15 0.19
Matches are distributed among these distances:
26 13 0.28
27 5 0.11
28 9 0.19
29 9 0.19
30 5 0.11
31 6 0.13
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (26 bp):
ATTCAAATATTAATTTAAATGTCAAT
Found at i:73500605 original size:14 final size:13
Alignment explanation
Indices: 73500577--73500613 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
73500567 ATCCTGGAAT
73500577 ATTAA-AACAATA
1 ATTAAGAACAATA
73500589 ATTAAGAACACATA
1 ATTAAGAACA-ATA
73500603 ATTAAGAACAA
1 ATTAAGAACAA
73500614 GTTAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:73503394 original size:23 final size:23
Alignment explanation
Indices: 73503368--73503411 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
73503358 ATTTGTCTAA
73503368 ATTAAGATT-AAT-TAGGTGAAAGG
1 ATTAA-ATTGAATATAGG-GAAAGG
73503391 ATTAAATTGAATATAGGGAAA
1 ATTAAATTGAATATAGGGAAA
73503412 ATGATGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.16
23 12 0.63
24 4 0.21
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.30
Consensus pattern (23 bp):
ATTAAATTGAATATAGGGAAAGG
Found at i:73503538 original size:14 final size:14
Alignment explanation
Indices: 73503519--73503551 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73503509 TAATTACATA
73503519 TATTTCTTAATTAT
1 TATTTCTTAATTAT
*
73503533 TATTTCTTACTTAT
1 TATTTCTTAATTAT
73503547 TATTT
1 TATTT
73503552 TAAGTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTTCTTAATTAT
Found at i:73503675 original size:41 final size:42
Alignment explanation
Indices: 73503609--73503689 Score: 119
Period size: 41 Copynumber: 1.9 Consensus size: 42
73503599 AACATAACAT
* * *
73503609 AAATAAATAAAGAATTGAAATAAAAAGAAA-AGAAAGAATCA
1 AAATAAAGAAAGAATAGAAAGAAAAAGAAAGAGAAAGAATCA
73503650 AAATAAAGAAAGAATAGAAAGAAAAAGAAAGGAGAAAGAA
1 AAATAAAGAAAGAATAGAAAGAAAAAGAAA-GAGAAAGAA
73503690 AAGAAGGAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 27 0.77
43 8 0.23
ACGTcount: A:0.72, C:0.01, G:0.17, T:0.10
Consensus pattern (42 bp):
AAATAAAGAAAGAATAGAAAGAAAAAGAAAGAGAAAGAATCA
Found at i:73503696 original size:15 final size:17
Alignment explanation
Indices: 73503665--73503700 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
73503655 AAGAAAGAAT
73503665 AGAAAGAAAAAGAAAGG
1 AGAAAGAAAAAGAAAGG
73503682 AGAAAG-AAAAG-AAGG
1 AGAAAGAAAAAGAAAGG
73503697 AGAA
1 AGAA
73503701 TTAGGGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 5 0.26
17 6 0.32
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (17 bp):
AGAAAGAAAAAGAAAGG
Found at i:73509092 original size:16 final size:16
Alignment explanation
Indices: 73509071--73509103 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
73509061 TAAAGAAAGA
73509071 TGAAAACCTAATGTGG
1 TGAAAACCTAATGTGG
*
73509087 TGAAAACCTGATGTGG
1 TGAAAACCTAATGTGG
73509103 T
1 T
73509104 CGATTAGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (16 bp):
TGAAAACCTAATGTGG
Found at i:73515146 original size:19 final size:19
Alignment explanation
Indices: 73515122--73515158 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
73515112 AAAGGAAATA
73515122 TAGGGCTTGGTAAGAGCAT
1 TAGGGCTTGGTAAGAGCAT
73515141 TAGGGCTTGGTAAGAGCA
1 TAGGGCTTGGTAAGAGCA
73515159 GTAGTGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.38, T:0.24
Consensus pattern (19 bp):
TAGGGCTTGGTAAGAGCAT
Found at i:73517211 original size:11 final size:11
Alignment explanation
Indices: 73517195--73517220 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73517185 TTTATTTGGA
73517195 TATGAAAAATG
1 TATGAAAAATG
73517206 TATGAAAAATG
1 TATGAAAAATG
73517217 TATG
1 TATG
73517221 TTTGTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (11 bp):
TATGAAAAATG
Found at i:73519210 original size:50 final size:50
Alignment explanation
Indices: 73519111--73519402 Score: 302
Period size: 50 Copynumber: 5.8 Consensus size: 50
73519101 TGAGAACACA
* *** * * *
73519111 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGTCACG
*
73519163 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
* * * * *
73519213 TGTGTAGTACTAAGTGTAGGCTACTAT-TCGTACCCGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGT-GTACCAGA-TAGTT-AGGTCACG
* * * *
73519264 TGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
* ** * * *
73519314 TGTGTAGTACTAAGTGCAGACTACTACCTGTACCAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
*
73519363 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
73519403 CTTCGATTAC
Statistics
Matches: 200, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
49 42 0.21
50 85 0.43
51 37 0.19
52 36 0.18
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
Found at i:73528242 original size:40 final size:40
Alignment explanation
Indices: 73528181--73528402 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
73528171 AACCCAAGTA
* *
73528181 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
73528220 CCTTCGGGTCTTATCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
73528260 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
73528300 CCTTCGGGACTTAGCCCTGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73528340 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73528380 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73528403 CATTCGAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 11 0.07
40 157 0.93
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:73539216 original size:40 final size:40
Alignment explanation
Indices: 73539142--73539323 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
73539132 AACCCAAGTA
* *
73539142 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
73539181 CCTTTGGGTCTTATCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
73539221 CCTTCGGGACTTGGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
73539261 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
73539301 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73539324 CATTCGAATA
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 10 0.08
40 115 0.90
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:73547226 original size:40 final size:40
Alignment explanation
Indices: 73547152--73547333 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
73547142 AACCCAAGTA
* * *
73547152 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
73547191 CCTTTGGGTCTTATCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
73547231 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
73547271 CCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
73547311 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73547334 CATTCGAATA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 10 0.08
40 113 0.90
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:73552165 original size:52 final size:50
Alignment explanation
Indices: 73552107--73552244 Score: 167
Period size: 46 Copynumber: 2.8 Consensus size: 50
73552097 ATAAATAACC
* *
73552107 GAAGCTATATTGATCTCGCACACTAAGTGCCAATATATATATTTATATAGCT
1 GAAGCTATCTCGATCTCGCACACTAAGTGCCAATATATATA--TATATAGCT
* * *
73552159 GGAGCTATCTCAATCACGCACACTAAGTGCC---A-ATATATATATAGCT
1 GAAGCTATCTCGATCTCGCACACTAAGTGCCAATATATATATATATAGCT
* *
73552205 GAAGCTATCTCGGTCTCGCACACTATGTGCCAATATATAT
1 GAAGCTATCTCGATCTCGCACACTAAGTGCCAATATATAT
73552245 CCGAAATTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
46 35 0.49
48 5 0.07
49 2 0.03
50 4 0.06
52 26 0.36
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (50 bp):
GAAGCTATCTCGATCTCGCACACTAAGTGCCAATATATATATATATAGCT
Found at i:73563474 original size:68 final size:67
Alignment explanation
Indices: 73563402--73563548 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 67
73563392 CATCATGTGT
* * * *
73563402 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73563464 ATGTAG
62 ATGTAG
** * *
73563470 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73563535 AG
66 AG
73563537 ACAAGAGAGCTA
1 ACAAGAGAGCTA
73563549 TGAGATAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 24 0.35
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73563507 original size:64 final size:64
Alignment explanation
Indices: 73563426--73563609 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
73563416 AGACATTATG
* *
73563426 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
73563490 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73563555 AA
63 AA
* * * *
73563557 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73563610 CGAACTACAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73569014 original size:46 final size:46
Alignment explanation
Indices: 73568947--73569075 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
73568937 TGTAACCCGC
* * *
73568947 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
73568993 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73569039 TCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73569076 TGCCCAAATA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73576745 original size:16 final size:16
Alignment explanation
Indices: 73576724--73576756 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
73576714 TTGTAATACC
73576724 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
73576740 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
73576756 C
1 C
73576757 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.27, G:0.06, T:0.18
Consensus pattern (16 bp):
CCAAAAATCCTGAAAT
Found at i:73588456 original size:46 final size:46
Alignment explanation
Indices: 73588406--73588581 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
73588396 TGGTTGAGCA
73588406 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
73588452 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
73588497 CATTCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
73588545 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73588582 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 61 0.57
47 27 0.25
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:73588567 original size:93 final size:93
Alignment explanation
Indices: 73588403--73588573 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73588393 GGATGGTTGA
* *
73588403 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
73588468 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
73588496 GCATTCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
73588561 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73588574 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73599226 original size:14 final size:14
Alignment explanation
Indices: 73599207--73599237 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73599197 TTCGAGATAA
73599207 AGCCAAATAGTTGT
1 AGCCAAATAGTTGT
73599221 AGCCAAATAGTTGT
1 AGCCAAATAGTTGT
73599235 AGC
1 AGC
73599238 TTCAGAAGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (14 bp):
AGCCAAATAGTTGT
Found at i:73612989 original size:40 final size:40
Alignment explanation
Indices: 73612933--73613148 Score: 287
Period size: 40 Copynumber: 5.4 Consensus size: 40
73612923 GATGATAACG
* * * *
73612933 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATTAC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
73612973 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
73613013 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
73613053 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
73613093 GGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
73613133 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
73613149 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 146 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:73616382 original size:27 final size:27
Alignment explanation
Indices: 73616350--73616670 Score: 349
Period size: 27 Copynumber: 12.0 Consensus size: 27
73616340 ACCCTTAATT
* * * *
73616350 GGTAAAATGACTATTTTGCACTAATGG
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
73616377 GGTAAAATGATTGTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
73616404 TGTAAAATGACTGTTTTGCCCTTATGG
1 GGTAAAATGACTGTTTTGCCCTTATGA
*
73616431 GGTAAAATGACTATTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
*
73616458 GGTAAAATGATTG-TTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* * * *
73616484 GGTAAAAAGATTGTTTTGCCTTTATGG
1 GGTAAAATGACTGTTTTGCCCTTATGA
* * *
73616511 GGTGAAATGATTG-TTTGCCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGA
** *
73616537 GGTAAAATGGTTGTTTTGCCCTTATGG
1 GGTAAAATGACTGTTTTGCCCTTATGA
*
73616564 GGTAAAATGACTGTTTTGCCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
73616591 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGA
* * * **
73616618 GGTAAAATGACTATTTTGCCTTTTTCT
1 GGTAAAATGACTGTTTTGCCCTTATGA
* * *
73616645 GGTAAGATGACTGTTTTACCCCTATG
1 GGTAAAATGACTGTTTTGCCCTTATG
73616671 TGATGTATGT
Statistics
Matches: 248, Mismatches: 44, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 46 0.19
27 202 0.81
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGA
Found at i:73617005 original size:18 final size:18
Alignment explanation
Indices: 73616982--73617071 Score: 94
Period size: 18 Copynumber: 5.1 Consensus size: 18
73616972 GGAATTGCAT
* *
73616982 ACTGTTCACTGTTACTGC
1 ACTGTTTACTATTACTGC
* *
73617000 ACTGTTTATTATTACTGT
1 ACTGTTTACTATTACTGC
*
73617018 AATGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
* *
73617036 A-T-TATTATTGTTACTGC
1 ACTGT-TTACTATTACTGC
73617053 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
73617071 A
1 A
73617072 ATGGGACAAG
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
16 1 0.02
17 13 0.22
18 43 0.74
19 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:73617050 original size:35 final size:35
Alignment explanation
Indices: 73617005--73617071 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
73616995 ACTGCACTGT
*
73617005 TTATTATTACTGTAATGTTTACTATTACTGCATTA
1 TTATTATTACTGCAATGTTTACTATTACTGCATTA
* *
73617040 TTATTGTTACTGCACTGTTTACTATTACTGCA
1 TTATTATTACTGCAATGTTTACTATTACTGCA
73617072 ATGGGACAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.49
Consensus pattern (35 bp):
TTATTATTACTGCAATGTTTACTATTACTGCATTA
Found at i:73618740 original size:40 final size:40
Alignment explanation
Indices: 73618696--73618771 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
73618686 TAGTGCCTCA
*
73618696 TATAGCCAAAGCTA-TTTCAATTCGCACACTTAGTGCTATT
1 TATAGCCAAAGCTATTTTCAA-ACGCACACTTAGTGCTATT
* *
73618736 TATAGCCGAAGCTATTTTTAAACGCACACTTAGTGC
1 TATAGCCAAAGCTATTTTCAAACGCACACTTAGTGC
73618772 CAAACATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.33
Consensus pattern (40 bp):
TATAGCCAAAGCTATTTTCAAACGCACACTTAGTGCTATT
Found at i:73624130 original size:26 final size:26
Alignment explanation
Indices: 73624055--73624130 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
73624045 CATGTACTAA
* * *
73624055 TACTGGCAGCTTTGCTGCATTACTGT
1 TACTGGCAGCTTTGCTGCGTTATTAT
* * *
73624081 TACTAGCAGCTTTGCCGCGATATTAT
1 TACTGGCAGCTTTGCTGCGTTATTAT
73624107 TACTGGCAGCTTTGCTGCGTTATT
1 TACTGGCAGCTTTGCTGCGTTATT
73624131 GGTGTGTTGG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGTTATTAT
Found at i:73628414 original size:37 final size:37
Alignment explanation
Indices: 73628364--73628479 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
73628354 TTATTACGAA
73628364 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
73628401 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
* * * *
73628438 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
73628475 GTCTT
1 GTCTT
73628480 TAGAGCTCGA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
Found at i:73628675 original size:47 final size:47
Alignment explanation
Indices: 73628597--73629033 Score: 667
Period size: 47 Copynumber: 9.2 Consensus size: 47
73628587 CCCTTCGGGA
* * * * **
73628597 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
73628644 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
73628691 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
73628738 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
73628787 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
73628834 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
73628883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
73628930 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
73628978 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
73629025 CTTATCACA
1 CTTATCACA
73629034 ATTTAGAATT
Statistics
Matches: 358, Mismatches: 27, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
47 226 0.63
48 45 0.13
49 87 0.24
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:73628792 original size:96 final size:95
Alignment explanation
Indices: 73628597--73629035 Score: 675
Period size: 96 Copynumber: 4.6 Consensus size: 95
73628587 CCCTTCGGGA
** * * * * * *
73628597 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
73628661 CTTTCACATTCATCACATCGGCCATTAAGC
66 CTTTCACATTCATCACATCGGCCATTAAGC
* *
73628691 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
73628756 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
73628787 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
73628852 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
73628883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC-ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACAATATATAC
73628947 ACTTTCACATTCATCACATCGGCCATTAAGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
*
73628978 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
73629036 TTAGAATTCA
Statistics
Matches: 320, Mismatches: 21, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
94 49 0.15
95 90 0.28
96 177 0.55
97 4 0.01
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAAGC
Found at i:73628809 original size:143 final size:143
Alignment explanation
Indices: 73628597--73629033 Score: 711
Period size: 143 Copynumber: 3.1 Consensus size: 143
73628587 CCCTTCGGGA
* * * * *
73628597 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
**
73628660 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
*
73628725 TCGGCCATTAAGC
131 TCGGCCATTAGGC
* * * *
73628738 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
73628803 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATACACTTTCACATTCATCA
73628868 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
73628883 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA-TCACATATATA
73628946 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCAC
73629011 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
73629025 CTTATCACA
1 CTTATCACA
73629034 ATTTAGAATT
Statistics
Matches: 274, Mismatches: 16, Indels: 10
0.91 0.05 0.03
Matches are distributed among these distances:
141 10 0.04
142 48 0.18
143 123 0.45
144 49 0.18
145 44 0.16
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:73632062 original size:87 final size:87
Alignment explanation
Indices: 73631916--73632092 Score: 354
Period size: 87 Copynumber: 2.0 Consensus size: 87
73631906 ACAAGATTAA
73631916 CAAAATAGTGTCCATTCAGCAATAGCACATATAACTCTTACAATGCCATATCCTAGATATGGTCT
1 CAAAATAGTGTCCATTCAGCAATAGCACATATAACTCTTACAATGCCATATCCTAGATATGGTCT
73631981 TACATATTCTCACATATCGAGT
66 TACATATTCTCACATATCGAGT
73632003 CAAAATAGTGTCCATTCAGCAATAGCACATATAACTCTTACAATGCCATATCCTAGATATGGTCT
1 CAAAATAGTGTCCATTCAGCAATAGCACATATAACTCTTACAATGCCATATCCTAGATATGGTCT
73632068 TACATATTCTCACATATCGAGT
66 TACATATTCTCACATATCGAGT
73632090 CAA
1 CAA
73632093 TGCCATGTCC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 90 1.00
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (87 bp):
CAAAATAGTGTCCATTCAGCAATAGCACATATAACTCTTACAATGCCATATCCTAGATATGGTCT
TACATATTCTCACATATCGAGT
Found at i:73632493 original size:40 final size:40
Alignment explanation
Indices: 73632449--73632564 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
73632439 GAATACATGT
* * *
73632449 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
73632489 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
73632529 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
73632565 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:73632589 original size:40 final size:40
Alignment explanation
Indices: 73632465--73632726 Score: 225
Period size: 40 Copynumber: 6.5 Consensus size: 40
73632455 CATGATTGCT
* * * *
73632465 CTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTC-GCACCAATGC
** * ** * *
73632504 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
73632544 TCTTCGGAAT-TTAGCCCGGATTTAGT-AACTCGCACCAATGC
1 -CTTCGG-GTCTTAGCCCGGATATA-TCAACTCGCACCAATGC
*
73632585 CTTCGGGTCTTAGCCCGGATATATCAACTTGCA-CAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAA-TGC
* *
73632625 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
73632665 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGC-TCAATTGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACCAA-TGC
*
73632705 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
73632727 CATTCAAATG
Statistics
Matches: 187, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
39 7 0.04
40 161 0.86
41 19 0.10
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
Found at i:73632597 original size:80 final size:78
Alignment explanation
Indices: 73632475--73632726 Score: 251
Period size: 80 Copynumber: 3.2 Consensus size: 78
73632465 CTTCGGGACC
* * ** * **
73632475 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCAC
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATAAATCACTAGCAC
73632538 GAA-TGCTCTTCGGAATT
64 -AATTGC-CTTCGG-ATT
* * * *
73632555 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCAC
*
73632619 AATTGCCTTCGGGTCT
64 AATTGCCTTCGGAT-T
* *
73632635 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCTCA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AATCACTAGCACA
*
73632700 ATTGCCTTCGGGACT
65 ATTGCCTTC-GGATT
73632715 TAGCCCGGATAT
1 TAGCCCGGATAT
73632727 CATTCAAATG
Statistics
Matches: 145, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
79 2 0.01
80 116 0.80
81 26 0.18
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (78 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCACAA
TTGCCTTCGGATT
Found at i:73633052 original size:29 final size:29
Alignment explanation
Indices: 73633013--73633092 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
73633003 CTTAATAATC
*
73633013 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73633043 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73633072 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
73633093 CTCACAATCG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73633177 original size:43 final size:43
Alignment explanation
Indices: 73633073--73633294 Score: 284
Period size: 43 Copynumber: 5.4 Consensus size: 43
73633063 TGCATTTCAA
* * * *
73633073 GCCCGCACACTTAGTGC-CATCTCACAATCGTG-ATACTTA--
1 GCCCGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
73633112 GCCCG--CACTTA-TGC--ATC-CGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
*
73633149 GCCTGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
* * *
73633192 GCCTGTACACTTAGTGCGAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
* *
73633235 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
73633278 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
73633295 TGAAAACCAA
Statistics
Matches: 163, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
34 8 0.05
35 9 0.06
36 3 0.02
37 10 0.06
39 11 0.07
40 3 0.02
42 3 0.02
43 116 0.71
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCGAATCTCGCAACCGTGAACACTTATT
Found at i:73647794 original size:6 final size:6
Alignment explanation
Indices: 73647780--73647825 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
73647770 TCCTCCAATC
* *
73647780 TTTTCA TTTTTA TTTTTA TTTTTA TTTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTT
73647826 CAATTTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:73647802 original size:13 final size:13
Alignment explanation
Indices: 73647780--73647820 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
73647770 TCCTCCAATC
*
73647780 TTTTCATTTTTA-
1 TTTTTATTTTTAT
73647792 TTTTTATTTTTAT
1 TTTTTATTTTTAT
73647805 TTTTTATTTTTAT
1 TTTTTATTTTTAT
73647818 TTT
1 TTT
73647821 CATTTCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:73647808 original size:19 final size:19
Alignment explanation
Indices: 73647780--73647825 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
73647770 TCCTCCAATC
73647780 TTTTCA-TTTTTATTTTTA
1 TTTTCATTTTTTATTTTTA
*
73647798 TTTTTATTTTTTATTTTTA
1 TTTTCATTTTTTATTTTTA
73647817 TTTTCATTT
1 TTTTCATTT
73647826 CAATTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTCATTTTTTATTTTTA
Found at i:73650754 original size:13 final size:13
Alignment explanation
Indices: 73650736--73650764 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73650726 TTTAGTTTAA
73650736 TTAGTTAATTAGT
1 TTAGTTAATTAGT
73650749 TTAGTTAATTAGT
1 TTAGTTAATTAGT
73650762 TTA
1 TTA
73650765 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:73653468 original size:43 final size:43
Alignment explanation
Indices: 73653407--73653699 Score: 367
Period size: 43 Copynumber: 6.8 Consensus size: 43
73653397 TAGAATTTTT
* * *
73653407 GATATGTGATTTCGTGTAAGACCCTATTTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
73653450 GATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC
1 GATATGTGATTACGTGTAAGACC-CTGTCTGGGACAG-TGGCATC
* *
73653493 GATATGTGATTACGTGTAAGAACCTGTCTGGGACTGTGGCATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * *
73653536 GATATGTGATTACGTGTGAGACCCTCTCTGGGATAGTGGCATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
* *
73653579 GATATGTGATTACGTGTAAGACCCTGTTTGGGACAGTGACATC
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * * * ** *
73653622 AATATGTGATTACGTGTATGACTAC-ATCTAAGACAATGGCATC
1 GATATGTGATTACGTGTAAGAC-CCTGTCTGGGACAGTGGCATC
* *
73653665 GATATGTGATTACGTGTAAGACCATGTGTGGGACA
1 GATATGTGATTACGTGTAAGACCCTGTCTGGGACA
73653700 TCGATGTAAG
Statistics
Matches: 213, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.01
43 208 0.98
44 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC
Found at i:73653707 original size:25 final size:25
Alignment explanation
Indices: 73653679--73653728 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
73653669 TGTGATTACG
*
73653679 TGTAAGACCATGTGTGGGACATCGA
1 TGTAAGACCATGTCTGGGACATCGA
73653704 TGTAAGACCATGTCTGGGACATCGA
1 TGTAAGACCATGTCTGGGACATCGA
73653729 CATTGTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (25 bp):
TGTAAGACCATGTCTGGGACATCGA
Found at i:73653760 original size:41 final size:43
Alignment explanation
Indices: 73653703--73653797 Score: 124
Period size: 41 Copynumber: 2.3 Consensus size: 43
73653693 TGGGACATCG
* *
73653703 ATGTAAGACCATGTCTGGGACA-TCGACATTG-TATTTGATT-C
1 ATGTAAGACCATGTCTGGGACAGT-GACATCGATATGTGATTAC
* *
73653744 ATGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTAC
1 ATGTAAGACCATGTCTGGGACAGTGACATCGATATGTGATTAC
73653787 ATGTAAGACCA
1 ATGTAAGACCA
73653798 CATCTTGGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 26 0.57
42 9 0.20
43 11 0.24
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACAGTGACATCGATATGTGATTAC
Found at i:73661158 original size:28 final size:29
Alignment explanation
Indices: 73661125--73661225 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
73661115 TATAGTAAGT
* * *
73661125 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
73661153 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
73661182 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
73661211 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73661226 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:73664119 original size:43 final size:45
Alignment explanation
Indices: 73664057--73664140 Score: 120
Period size: 43 Copynumber: 1.9 Consensus size: 45
73664047 GTTTAGGGAG
*
73664057 ATAAGATCTTCAACCTTCAATCTGCT-TCCTTGCTACCTCAGGAAC
1 ATAAGATCTTCAACCTTCAACCTGCTCT-CTTGCTACCTCAGGAAC
*
73664102 ATAAGA-C-TCAACTTTCAACCTGCTCTCTTGCTACCTCAG
1 ATAAGATCTTCAACCTTCAACCTGCTCTCTTGCTACCTCAG
73664141 AGAGATACGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 28 0.78
44 2 0.06
45 6 0.17
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.31
Consensus pattern (45 bp):
ATAAGATCTTCAACCTTCAACCTGCTCTCTTGCTACCTCAGGAAC
Found at i:73664274 original size:176 final size:176
Alignment explanation
Indices: 73663967--73664920 Score: 1389
Period size: 176 Copynumber: 5.4 Consensus size: 176
73663957 ATGTGATGAA
* * * *
73663967 AGATAAGGCTGGTGGCTTAAATTTTCTCCATTGCCGATACATAGAGATAAGATTCGCCTCTTCCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
* *
73664032 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCA
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
*
73664097 GGAACATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
131 GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * * * *
73664143 AGATACGGCTGGTAGTTTGAATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCCTCTTTCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
* ** *
73664208 ATCGGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTGCCTCA
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
* * * * * * *
73664273 GGAAGAGAAGACTTAATTTTTAGCCTGCTCTCTTACAACCTCAGAG
131 GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
* *
73664319 AGATAAGGCT-ATGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
*
73664383 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCT
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC-
* *
73664448 A-GAAGATAAGACTCAACTTTCAACCTGCTCTCTTCCTACCTCAGAA
130 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
* * *
73664494 AGATAAGACTGGTGGCTTAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGTCATC-TTC
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCG-CCTCTTTC
* * * ** *
73664558 GATCTACTCCGCTGCAACTTCAGGGAGACAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCT
65 GATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCT
*
73664623 CAGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTTAGAG
129 CAGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
*
73664671 AGATAAGGCTGGTAGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTC-
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
* * * * *
73664735 AGTCTGCTCCACTACTGCTTAGGAAGATAAGGTCTTCAATCTTCAGTCTGCTTCCTTGTTGCCTC
66 A-TCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
*
73664800 AGGAAGATAGGACTCAA-TATTCAACCTGCTCTCTTGCTACCTCAGAG
130 AGGAAGATAAGACTCAACT-TTCAACCTGCTCTCTTGCTACCTCAGAG
73664847 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTC
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC-TCTTTC
*
73664911 GATCTACTCC
65 GATCTGCTCC
73664921 GCTGCAACTT
Statistics
Matches: 689, Mismatches: 79, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
175 153 0.22
176 375 0.54
177 161 0.23
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (176 bp):
AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAG
Found at i:73664457 original size:45 final size:43
Alignment explanation
Indices: 73664406--73664853 Score: 165
Period size: 43 Copynumber: 10.2 Consensus size: 43
73664396 CTGTTTAGGG
73664406 AGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCTA-GA
1 AGATAAGA-CTTCAATCTTCAATCTGC-TCCTTGCTACCTC-AGGA
* * *
73664451 AGATAAGAC-TCAA-CTTTCAACCTGCTCTCTTCCTACCTCAGAA
1 AGATAAGACTTCAATC-TTCAATCTGCTC-CTTGCTACCTCAGGA
***** * * *
73664494 AGATAAGACTGGTGGCTTAAATCTGCTCCATTGCCA-ATACATGG-
1 AGATAAGACTTCAATCTTCAATCTGCTCC-TTGCTACCT-CA-GGA
* * * * * * *
73664538 AGATAAGA-TTCGTCATCTTCGATCTACTCCGCTGCAACTTCAGGG
1 AGATAAGACTTC--AATCTTCAATCTGCTCC-TTGCTACCTCAGGA
*
73664583 AGACAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGA
1 AGATAAGA-CTTCAATCTTCAATCTGC-TCCTTGCTACCTCAGGA
* *
73664628 AGATAAGAC-TCAA-CTTTCAACCTGCTCTCTTGCTACCTTA-GA
1 AGATAAGACTTCAATC-TTCAATCTGCTC-CTTGCTACCTCAGGA
* *** * * *
73664670 GAGATAAGGCTGGTAGCTTAAATCTGCTCCATTGC--CGATACATGG-
1 -AGATAAGACTTCAATCTTCAATCTGCTCC-TTGCTAC-CT-CA-GGA
** * * *
73664715 AGATAAGA-TTCGCCTCTTTCAGTCTGCTCC--ACTACTGCTTAGGA
1 AGATAAGACTTC-AATC-TTCAATCTGCTCCTTGCTAC--CTCAGGA
* * * *
73664759 AGATAAGGTCTTCAATCTTCAGTCTGCTTCCTTGTTGCCTCAGGA
1 AGATAA-GACTTCAATCTTCAATCTGC-TCCTTGCTACCTCAGGA
* * *
73664804 AGATAGGAC-TCAATATTCAACCTGCTCTCTTGCTACCTCA-GA
1 AGATAAGACTTCAATCTTCAATCTGCTC-CTTGCTACCTCAGGA
73664846 GAGATAAG
1 -AGATAAG
73664854 GCTGGTGGCT
Statistics
Matches: 295, Mismatches: 70, Indels: 78
0.67 0.16 0.18
Matches are distributed among these distances:
42 15 0.05
43 102 0.35
44 72 0.24
45 93 0.32
46 8 0.03
47 5 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
AGATAAGACTTCAATCTTCAATCTGCTCCTTGCTACCTCAGGA
Found at i:73664808 original size:353 final size:352
Alignment explanation
Indices: 73663967--73664946 Score: 1475
Period size: 353 Copynumber: 2.8 Consensus size: 352
73663957 ATGTGATGAA
* * *
73663967 AGATAAGGCTGGTGGCTTAAATTTTCTCCATTGCCGATACATAGAGATAAGATTCGCCTCTTCCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCG
*
73664032 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCA
66 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
* * * * *
73664097 GGAACATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATACGGCTGGTAGTTTG
131 GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTA
* * * ** * * **
73664162 AATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCCTCTTTCGATCGGCTCCACTACTGCTT
196 AATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCATC-TTCGATCTACTCCGCTGCAACTT
* * * * *
73664227 -AGGGAGATAAGATCTTCAATCTTCAGCCTGCTTCCTTGCTGCCTCAGGAAGAGAAGACTTAATT
260 CAGGGAGACAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGGAAGAGAAGACTCAACT
* *
73664291 TTTAGCCTGCTCTCTTACAACCTCAGAG
325 TTCAACCTGCTCTCTTACAACCTCAGAG
*
73664319 AGATAAGGCT-ATGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCG
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCG
73664383 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCT
66 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC-
* * *
73664448 A-GAAGATAAGACTCAACTTTCAACCTGCTCTCTTCCTACCTCAGAAAGATAAGACTGGTGGCTT
130 AGGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTT
*
73664512 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGTCATCTTCGATCTACTCCGCTGCAACT
195 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCG-CATCTTCGATCTACTCCGCTGCAACT
* *
73664577 TCAGGGAGACAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAAC
259 TCAGGGAGACAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGGAAGAGAAGACTCAAC
* * *
73664642 TTTCAACCTGCTCTCTTGCTACCTTAGAG
324 TTTCAACCTGCTCTCTTACAACCTCAGAG
* *
73664671 AGATAAGGCTGGTAGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTC-
1 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCG
* * * * * *
73664735 AGTCTGCTCCACTACTGCTTAGGAAGATAAGGTCTTCAATCTTCAGTCTGCTTCCTTGTTGCCTC
66 A-TCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTC
*
73664800 AGGAAGATAGGACTCAA-TATTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
130 AGGAAGATAAGACTCAACT-TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
73664864 TAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCGCTGCAAC
194 TAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCG-CATCTTCGATCTACTCCGCTGCAAC
73664929 TTCAGGGAGACAAGATCT
258 TTCAGGGAGACAAGATCT
73664947 GACTTCACCA
Statistics
Matches: 571, Mismatches: 50, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
351 220 0.39
352 107 0.19
353 244 0.43
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (352 bp):
AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTCCG
ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTCAACTTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTA
AATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCATCTTCGATCTACTCCGCTGCAACTTC
AGGGAGACAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGGAAGAGAAGACTCAACTT
TCAACCTGCTCTCTTACAACCTCAGAG
Found at i:73671914 original size:135 final size:135
Alignment explanation
Indices: 73671737--73672008 Score: 517
Period size: 135 Copynumber: 2.0 Consensus size: 135
73671727 TTGGACATTT
*
73671737 ATCAAGGTATAGTTGTACCCTTAAACTGTAATATCCTGAATTAGGGCCTAATCGGAATAGTGGTT
1 ATCAAGGTATAGTTGTACCCTTAAACTGTAATATCCTAAATTAGGGCCTAATCGGAATAGTGGTT
*
73671802 TTGGGACCAAAAATACGAGATAGAAATAATTATTTTATTATCATTTTAAGGTCTATGGCATGATT
66 TCGGGACCAAAAATACGAGATAGAAATAATTATTTTATTATCATTTTAAGGTCTATGGCATGATT
73671867 TCATG
131 TCATG
*
73671872 ATCAAGGTATAGTTGTACCCTTAAATTGTAATATCCTAAATTAGGGCCTAATCGGAATAGTGGTT
1 ATCAAGGTATAGTTGTACCCTTAAACTGTAATATCCTAAATTAGGGCCTAATCGGAATAGTGGTT
73671937 TCGGGACCAAAAATACGAGATAGAAATAATTATTTTATTATCATTTTAAGGTCTATGGCATGATT
66 TCGGGACCAAAAATACGAGATAGAAATAATTATTTTATTATCATTTTAAGGTCTATGGCATGATT
73672002 TCATG
131 TCATG
73672007 AT
1 AT
73672009 TGTGTGAAAA
Statistics
Matches: 134, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 134 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (135 bp):
ATCAAGGTATAGTTGTACCCTTAAACTGTAATATCCTAAATTAGGGCCTAATCGGAATAGTGGTT
TCGGGACCAAAAATACGAGATAGAAATAATTATTTTATTATCATTTTAAGGTCTATGGCATGATT
TCATG
Found at i:73679312 original size:22 final size:22
Alignment explanation
Indices: 73679282--73679337 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
73679272 TAATAAACTA
*
73679282 CATCAGTATCT-AGTCTGTTCTG
1 CATCTGTATCTGA-TCTGTTCTG
*
73679304 CATCTGTATCTGATCTGTTTTG
1 CATCTGTATCTGATCTGTTCTG
73679326 CATCT-TATCTGA
1 CATCTGTATCTGA
73679338 ATTGTTATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 7 0.23
22 23 0.74
23 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.45
Consensus pattern (22 bp):
CATCTGTATCTGATCTGTTCTG
Found at i:73679751 original size:29 final size:28
Alignment explanation
Indices: 73679709--73679817 Score: 96
Period size: 28 Copynumber: 3.8 Consensus size: 28
73679699 ATGGGGTGTT
*
73679709 ACATATATATTATATATAATAAAACCCAC
1 ACATATATATTATACAT-ATAAAACCCAC
*
73679738 ACATATATATTATACATATAACACCCATGC
1 ACATATATATTATACATATAAAACCCA--C
*
73679768 ACCCA-ATATA-TATTACATATAACACCCAC
1 A--CATATATATTA-TACATATAAAACCCAC
* * *
73679797 TCACATATATTATATATATAA
1 ACATATATATTATACATATAA
73679818 CATTAAAACC
Statistics
Matches: 69, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
27 2 0.03
28 22 0.32
29 19 0.28
30 4 0.06
31 20 0.29
32 2 0.03
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (28 bp):
ACATATATATTATACATATAAAACCCAC
Found at i:73682070 original size:13 final size:13
Alignment explanation
Indices: 73682029--73682071 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
73682019 AATACCATAC
73682029 ATAGTTATACTGAAA
1 ATAGTTATAC--AAA
*
73682044 ATAGTAAT-CAAA
1 ATAGTTATACAAA
73682056 ATAGTTATACAAA
1 ATAGTTATACAAA
73682069 ATA
1 ATA
73682072 TGTGGAGCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 10 0.40
13 7 0.28
14 1 0.04
15 7 0.28
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.30
Consensus pattern (13 bp):
ATAGTTATACAAA
Found at i:73687917 original size:11 final size:11
Alignment explanation
Indices: 73687901--73687931 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
73687891 TGCCTCCCTT
73687901 ATTTATTTTTG
1 ATTTATTTTTG
73687912 ATTTATTTTTG
1 ATTTATTTTTG
*
73687923 AATTATTTT
1 ATTTATTTT
73687932 AATATTGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (11 bp):
ATTTATTTTTG
Found at i:73688409 original size:14 final size:13
Alignment explanation
Indices: 73688390--73688423 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
73688380 TGTATCAAAC
73688390 AAATTTTATAATTT
1 AAATTTTAT-ATTT
*
73688404 AAATTTAATATTT
1 AAATTTTATATTT
73688417 AAATTTT
1 AAATTTT
73688424 CAACACTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AAATTTTATATTT
Found at i:73688490 original size:15 final size:15
Alignment explanation
Indices: 73688451--73688508 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
73688441 TTGATAAACT
73688451 AAAAAATTAAGTGCTG
1 AAAAAA-TAAGTGCTG
*
73688467 AAGAAATAAGTG-TG
1 AAAAAATAAGTGCTG
* *
73688481 AAAAACATAATTACTG
1 AAAAA-ATAAGTGCTG
*
73688497 AAAAATTAAGTG
1 AAAAAATAAGTG
73688509 TCGAATTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
14 6 0.18
15 15 0.45
16 12 0.36
ACGTcount: A:0.53, C:0.05, G:0.17, T:0.24
Consensus pattern (15 bp):
AAAAAATAAGTGCTG
Found at i:73690231 original size:13 final size:13
Alignment explanation
Indices: 73690195--73690225 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
73690185 ATTTTTATCA
73690195 TTTT-ATGTATAT
1 TTTTCATGTATAT
73690207 TTTTCATGTATAT
1 TTTTCATGTATAT
73690220 TTTTCA
1 TTTTCA
73690226 CTTATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (13 bp):
TTTTCATGTATAT
Found at i:73690241 original size:25 final size:25
Alignment explanation
Indices: 73690213--73690266 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
73690203 ATATTTTTCA
*
73690213 TGTATAT-TTTTCACTTATAAATTTG
1 TGTATATAATTTCACTTAT-AATTTG
* *
73690238 TGTATATAATTTCATTTGTAATTTG
1 TGTATATAATTTCACTTATAATTTG
73690263 TGTA
1 TGTA
73690267 CAATTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (25 bp):
TGTATATAATTTCACTTATAATTTG
Found at i:73694951 original size:40 final size:39
Alignment explanation
Indices: 73694894--73694993 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 39
73694884 TATTATATAC
73694894 TCTGTCTAGTGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTAGTGT-TTTCGGTTGGATTAGCTCTTATGAGCT
* *
73694934 TCTGTCTGGTGTATTTCGGTTTGATTAGCTCTTATGAGCT
1 TCTGTCTAGTGT-TTTCGGTTGGATTAGCTCTTATGAGCT
* *
73694974 TTTGTCTAGTGTGTTCGGTT
1 TCTGTCTAGTGTTTTCGGTT
73694994 AATCTGATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
39 7 0.13
40 47 0.87
ACGTcount: A:0.11, C:0.14, G:0.27, T:0.48
Consensus pattern (39 bp):
TCTGTCTAGTGTTTTCGGTTGGATTAGCTCTTATGAGCT
Found at i:73698612 original size:45 final size:45
Alignment explanation
Indices: 73698527--73698631 Score: 108
Period size: 45 Copynumber: 2.4 Consensus size: 45
73698517 AAATGAATAG
* * * *
73698527 AAATAGAGAAATGGAAAGCATTCAGAAATGATTATGATTTTCTCTA
1 AAATGGAGAAATGGAAAGCATTCAGAAATAAATATAATTTTCTC-A
* ** *
73698573 AAATGGAGAAAT-GAAATCATTTGGAAATAAATATAATTTTTTCA
1 AAATGGAGAAATGGAAAGCATTCAGAAATAAATATAATTTTCTCA
73698617 AAAT-G-GAAATGGAAA
1 AAATGGAGAAATGGAAA
73698632 TGAAAATGAG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 5 0.10
43 5 0.10
44 5 0.10
45 24 0.48
46 11 0.22
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.30
Consensus pattern (45 bp):
AAATGGAGAAATGGAAAGCATTCAGAAATAAATATAATTTTCTCA
Found at i:73702148 original size:93 final size:93
Alignment explanation
Indices: 73702041--73702211 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
73702031 GCCCCTAAGT
* *
73702041 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73702106 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
73702134 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73702199 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73702212 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73702208 original size:46 final size:46
Alignment explanation
Indices: 73702036--73702208 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
73702026 AACCCGCCCC
* * * *
73702036 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
73702082 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
73702130 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
73702175 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73702209 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:73707973 original size:93 final size:93
Alignment explanation
Indices: 73707842--73708012 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73707832 GCCCCTAAGT
* * *
73707842 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73707907 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
73707935 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73708000 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73708013 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73708009 original size:46 final size:46
Alignment explanation
Indices: 73707837--73708009 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73707827 AACCCGCCCC
* * * * *
73707837 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
73707883 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
73707931 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
73707976 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73708010 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:73710875 original size:43 final size:43
Alignment explanation
Indices: 73710826--73710982 Score: 151
Period size: 43 Copynumber: 3.6 Consensus size: 43
73710816 TCGGCATTTC
** * *
73710826 GCCTGCTAGGCTTGAAGCTCGATATCATTTCACC-GACATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCAG-CATTATA
* *
73710869 GCCTGCTAAGCCCGAAGCCCGATATTATCTCACCAGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCAGCATTATA
* *
73710912 GCCTGCTAGGCCCGAAGCCCGATAAT-ATTATTCACCAGC-TTAAA
1 GCCTGCTAGGCCCGAAGCCCGAT-ATCA-T-CTCACCAGCATTATA
* *
73710956 GCTTGCTAGG-CCGAGGCCCGAATATCA
1 GCCTGCTAGGCCCGAAGCCCG-ATATCA
73710983 CATTTCGATA
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
43 69 0.71
44 20 0.21
45 8 0.08
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
GCCTGCTAGGCCCGAAGCCCGATATCATCTCACCAGCATTATA
Found at i:73711562 original size:80 final size:81
Alignment explanation
Indices: 73711426--73711584 Score: 198
Period size: 80 Copynumber: 2.0 Consensus size: 81
73711416 CCTTGTCTCA
* * *
73711426 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTTATTTATTCAAACACACATGC
1 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCC
73711491 AGCACATTATATTTCT
66 AGCACATTATATTTCT
* * * * *
73711507 ATGTCTATTTCGAATT-AATAA-TTTAGCCACATTCGGCTCTAA-TCATTTCTCCAAACATATAT
1 ATGTCTATTTC-AATTCAAAAAGTATAGCCACATTCGGCTC-AATTCATTTATCCAAACACACAT
*
73711569 CCATCACATTATATTT
64 CCAGCACATTATATTT
73711585 ATACATCTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
80 46 0.69
81 17 0.25
82 4 0.06
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (81 bp):
ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCC
AGCACATTATATTTCT
Found at i:73712670 original size:14 final size:15
Alignment explanation
Indices: 73712641--73712670 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73712631 AAAAATTTAG
73712641 ACATGATACTTTCAC
1 ACATGATACTTTCAC
73712656 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
73712670 A
1 A
73712671 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:73714384 original size:32 final size:32
Alignment explanation
Indices: 73714347--73714411 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
73714337 AGATCGAAGG
73714347 TCCAACAGACTCCCATTGACTCTGATAGAATA
1 TCCAACAGACTCCCATTGACTCTGATAGAATA
73714379 TCCAACAGACTCCCATTGACTCTGATAGAATA
1 TCCAACAGACTCCCATTGACTCTGATAGAATA
73714411 T
1 T
73714412 AGTGTGTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (32 bp):
TCCAACAGACTCCCATTGACTCTGATAGAATA
Found at i:73719916 original size:25 final size:25
Alignment explanation
Indices: 73719882--73719957 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
73719872 ACTTGCAGGA
*
73719882 AAGGCTTTCCAAATAACTTCGCCACT
1 AAGGC-TTCCAAATAACTTCGCCACC
73719908 AAGGCTTCCTAAATAA-TAT-GCCACC
1 AAGGCTTCC-AAATAACT-TCGCCACC
*
73719933 ATAGGCCTTTCAAATAAC-TCGCCAC
1 A-AGG-CTTCCAAATAACTTCGCCAC
73719958 AAAGCCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
25 12 0.29
26 26 0.62
27 4 0.10
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (25 bp):
AAGGCTTCCAAATAACTTCGCCACC
Found at i:73720006 original size:50 final size:50
Alignment explanation
Indices: 73719894--73720166 Score: 345
Period size: 50 Copynumber: 5.4 Consensus size: 50
73719884 GGCTTTCCAA
* *
73719894 ATAACTTCGCCACTAAGGC-TTCCTAAATAATATGCCACCATAGGCCTTTCAA
1 ATAAC-TCGCCACAAAGGCTTTCC-AAATAATATGCCA-CATAGGCCTTTCAG
* * * *
73719946 ATAACTCGCCACAAAGCCTTTTCAGATAATATGCCACATATGCCTTTCAG
1 ATAACTCGCCACAAAGGCTTTCCAAATAATATGCCACATAGGCCTTTCAG
*
73719996 ATAACTCGCCACAAAGGCTTTCCAGATAATATGCCACATAGGCCTCTT-AG
1 ATAACTCGCCACAAAGGCTTTCCAAATAATATGCCACATAGGCCT-TTCAG
* *
73720046 ATAACTCACCACAAAGGCTTTCCAAATAATATGTCACATAGGCCTTTCAG
1 ATAACTCGCCACAAAGGCTTTCCAAATAATATGCCACATAGGCCTTTCAG
* * * *
73720096 ATAACTTGCCACAAATGCTTTCTAAATAATATGGCACATAGGCCTCTT-AG
1 ATAACTCGCCACAAAGGCTTTCCAAATAATATGCCACATAGGCCT-TTCAG
* *
73720146 AGAACTCACCACAAAGGCTTT
1 ATAACTCGCCACAAAGGCTTT
73720167 GTTTGATTAG
Statistics
Matches: 196, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
49 2 0.01
50 159 0.81
51 27 0.14
52 8 0.04
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (50 bp):
ATAACTCGCCACAAAGGCTTTCCAAATAATATGCCACATAGGCCTTTCAG
Done.